AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1265300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1265300 MtrunA17_Chr4g0072601 95.167 269 8 1 1 264 21 289 0.0 530
Msa1265300 MtrunA17_Chr4g0072611 74.242 264 63 1 2 260 19 282 2.50e-152 426
Msa1265300 MtrunA17_Chr7g0258911 74.621 264 62 1 2 260 18 281 1.35e-146 411
Msa1265300 MtrunA17_Chr4g0072671 72.388 268 65 2 1 259 19 286 7.56e-142 399
Msa1265300 MtrunA17_Chr4g0071341 69.466 262 74 2 5 260 22 283 2.79e-132 375
Msa1265300 MtrunA17_Chr8g0377841 64.906 265 82 3 1 259 23 282 1.61e-126 360
Msa1265300 MtrunA17_Chr2g0299061 63.433 268 88 2 1 258 19 286 2.03e-125 358
Msa1265300 MtrunA17_Chr3g0122031 65.637 259 78 2 5 258 25 277 2.04e-122 350
Msa1265300 MtrunA17_Chr3g0122021 65.637 259 78 2 5 258 25 277 2.09e-122 350
Msa1265300 MtrunA17_Chr4g0072681 63.786 243 75 3 29 258 1 243 6.73e-111 319
Msa1265300 MtrunA17_Chr8g0389641 55.985 259 67 3 5 258 26 242 3.69e-102 297
Msa1265300 MtrunA17_Chr6g0486581 52.239 268 115 5 1 258 19 283 1.57e-93 277
Msa1265300 MtrunA17_Chr5g0443391 47.744 266 129 2 2 262 22 282 3.10e-89 266
Msa1265300 MtrunA17_Chr6g0461761 52.964 253 108 4 15 259 39 288 3.93e-89 266
Msa1265300 MtrunA17_Chr6g0461731 52.174 253 110 4 15 259 62 311 1.34e-88 265
Msa1265300 MtrunA17_Chr4g0054431 48.450 258 120 5 10 258 34 287 1.40e-87 262
Msa1265300 MtrunA17_Chr4g0054451 48.450 258 120 5 10 258 36 289 1.96e-87 261
Msa1265300 MtrunA17_Chr7g0252601 51.600 250 114 3 15 258 39 287 6.00e-86 258
Msa1265300 MtrunA17_Chr7g0252631 49.248 266 118 5 2 258 30 287 6.13e-86 258
Msa1265300 MtrunA17_Chr3g0096651 49.194 248 118 2 16 258 38 282 1.26e-85 257
Msa1265300 MtrunA17_Chr7g0252621 49.248 266 118 5 2 258 30 287 1.30e-85 257
Msa1265300 MtrunA17_Chr1g0206681 46.617 266 135 2 2 260 28 293 3.94e-85 256
Msa1265300 MtrunA17_Chr2g0323161 49.004 251 113 4 23 259 38 287 2.81e-84 253
Msa1265300 MtrunA17_Chr4g0023961 47.860 257 119 4 22 264 39 294 1.13e-82 249
Msa1265300 MtrunA17_Chr8g0390201 52.857 210 92 4 55 258 1 209 3.44e-76 230
Msa1265300 MtrunA17_Chr1g0206081 42.910 268 136 4 6 260 33 296 8.60e-75 229
Msa1265300 MtrunA17_Chr8g0340001 45.923 233 118 4 32 258 1 231 1.18e-63 199
Msa1265300 MtrunA17_Chr4g0072641 67.176 131 29 1 130 260 34 150 6.34e-61 189
Msa1265300 MtrunA17_Chr4g0028221 42.149 242 120 6 30 258 70 304 1.28e-57 186
Msa1265300 MtrunA17_Chr7g0264731 39.474 266 139 7 7 259 36 292 7.09e-56 181
Msa1265300 MtrunA17_Chr2g0327411 38.462 247 132 6 16 249 62 301 1.61e-54 178
Msa1265300 MtrunA17_Chr8g0375981 36.471 255 151 4 16 260 39 292 6.62e-54 177
Msa1265300 MtrunA17_Chr1g0180451 38.760 258 132 8 16 258 48 294 1.59e-53 175
Msa1265300 MtrunA17_Chr1g0161951 38.168 262 142 8 16 263 41 296 2.25e-51 171
Msa1265300 MtrunA17_Chr2g0303861 39.600 250 135 6 16 258 37 277 2.88e-51 169
Msa1265300 MtrunA17_Chr8g0365231 36.923 260 146 8 15 258 53 310 1.86e-49 165
Msa1265300 MtrunA17_Chr2g0303721 38.367 245 140 8 16 256 38 275 4.48e-49 163
Msa1265300 MtrunA17_Chr5g0410621 37.692 260 145 6 16 260 50 307 4.56e-49 165
Msa1265300 MtrunA17_Chr7g0235541 39.908 218 112 6 55 261 1 210 3.59e-44 148
Msa1265300 MtrunA17_Chr8g0382041 33.829 269 156 9 13 264 37 300 2.69e-42 147
Msa1265300 MtrunA17_Chr8g0374231 43.925 107 51 3 159 260 1 103 2.10e-24 94.4
Msa1265300 MtrunA17_Chr4g0072631 72.549 51 14 0 5 55 28 78 2.18e-20 83.6
Msa1265300 MtrunA17_Chr8g0350711 33.333 174 103 6 30 196 54 221 1.28e-13 68.6
Msa1265300 MtrunA17_Chr8g0390181 44.615 65 34 1 6 70 26 88 4.59e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1265300 AT4G25810.1 69.811 265 73 2 1 258 19 283 8.23e-141 397
Msa1265300 AT5G57560.1 67.803 264 77 2 3 258 18 281 6.59e-138 390
Msa1265300 AT5G57550.1 68.582 261 74 2 3 258 25 282 5.03e-136 385
Msa1265300 AT4G30270.1 66.160 263 70 2 5 262 21 269 7.74e-131 371
Msa1265300 AT2G18800.1 63.475 282 85 5 1 264 21 302 7.15e-129 367
Msa1265300 AT5G48070.1 64.259 263 84 3 3 259 24 282 2.51e-127 363
Msa1265300 AT4G30280.1 64.151 265 85 3 1 259 22 282 8.33e-122 349
Msa1265300 AT3G23730.1 60.150 266 97 2 2 258 21 286 2.53e-121 348
Msa1265300 AT5G57530.1 61.154 260 96 1 6 260 25 284 9.60e-121 346
Msa1265300 AT4G14130.1 60.687 262 97 2 3 258 23 284 4.14e-120 345
Msa1265300 AT1G65310.2 63.118 263 87 3 3 259 46 304 8.46e-119 342
Msa1265300 AT1G65310.1 63.118 263 87 3 3 259 24 282 9.04e-119 341
Msa1265300 AT4G30290.1 62.642 265 89 3 1 259 17 277 2.45e-118 340
Msa1265300 AT5G57540.1 59.004 261 102 1 5 260 23 283 2.68e-118 340
Msa1265300 AT4G25820.1 58.868 265 104 1 1 260 23 287 6.83e-115 332
Msa1265300 AT5G65730.1 46.792 265 128 5 3 258 30 290 1.91e-87 262
Msa1265300 AT4G03210.1 51.852 243 108 3 24 258 43 284 1.28e-85 257
Msa1265300 AT5G13870.2 51.779 253 109 4 15 258 39 287 2.07e-85 257
Msa1265300 AT5G13870.1 51.779 253 109 4 15 258 39 287 2.07e-85 257
Msa1265300 AT5G13870.3 51.779 253 109 4 15 258 39 287 2.07e-85 257
Msa1265300 AT4G37800.1 47.692 260 123 5 10 260 36 291 2.12e-84 254
Msa1265300 AT4G28850.1 47.287 258 124 4 14 261 35 290 6.60e-84 253
Msa1265300 AT2G06850.1 49.802 253 114 4 15 258 42 290 2.37e-81 246
Msa1265300 AT4G03210.2 51.477 237 103 4 30 258 24 256 3.45e-81 245
Msa1265300 AT2G14620.1 45.318 267 137 4 2 260 31 296 6.39e-78 238
Msa1265300 AT2G06850.2 50.870 230 100 4 38 258 5 230 5.66e-77 233
Msa1265300 AT1G11545.1 44.030 268 127 6 10 260 40 301 5.09e-76 233
Msa1265300 AT4G13090.1 46.245 253 126 4 14 258 38 288 2.31e-72 223
Msa1265300 AT2G14620.2 47.391 230 112 4 39 260 18 246 1.07e-70 218
Msa1265300 AT2G14620.3 47.768 224 108 4 45 260 13 235 4.93e-69 213
Msa1265300 AT3G25050.1 43.874 253 130 5 14 258 41 289 2.82e-68 213
Msa1265300 AT4G13080.1 44.800 250 130 4 14 258 45 291 8.79e-68 212
Msa1265300 AT2G36870.1 40.000 265 137 6 7 258 42 297 4.61e-57 184
Msa1265300 AT1G14720.1 37.743 257 145 7 16 260 39 292 2.12e-52 174
Msa1265300 AT1G32170.1 36.981 265 150 7 10 260 34 295 7.11e-52 172
Msa1265300 AT3G44990.1 39.837 246 122 8 29 258 58 293 6.68e-51 169
Msa1265300 AT2G01850.1 35.798 257 150 7 16 260 39 292 1.13e-48 164
Msa1265300 AT1G10550.1 35.632 261 144 7 19 258 52 309 6.04e-48 161
Msa1265300 AT4G18990.1 33.452 281 159 8 8 262 38 316 1.76e-44 154
Msa1265300 AT3G48580.1 36.364 264 141 10 1 258 31 273 7.38e-42 145
Msa1265300 AT4G18990.2 35.455 220 120 6 63 262 25 242 3.77e-39 138
Msa1265300 AT3G48580.3 37.004 227 121 8 38 258 4 214 1.20e-36 129
Msa1265300 AT2G36870.2 42.446 139 65 3 7 132 42 178 9.24e-27 102
Msa1265300 AT3G48580.2 31.439 264 134 11 1 258 31 253 2.22e-25 101

Find 71 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAATAATCAATATCTTTA+TGG 0.128432 8_2:+69507146 Msa1265300:CDS
GAGAACAACAATTCTATTTA+TGG 0.140855 8_2:+69507441 Msa1265300:CDS
AATCTCATTGGCTGCTTCTT+TGG 0.175421 8_2:-69508181 None:intergenic
TCCATAAAGATATTGATTAT+TGG 0.219272 8_2:-69507147 None:intergenic
ATTGGCTGCTTCTTTGGATA+TGG 0.238008 8_2:-69508175 None:intergenic
TGAAATAGACTTTGAATTCT+TGG 0.240382 8_2:+69507355 Msa1265300:CDS
GACCCTGAGGGAATCGTTTA+AGG 0.250841 8_2:-69508459 None:intergenic
TATTGATGGCAGACCAATTA+GGG 0.305687 8_2:+69508123 Msa1265300:CDS
AAGTTCTTGAATTCCCTAAT+TGG 0.320227 8_2:-69508136 None:intergenic
TTCCTAAAAGAAGCAGTAAA+TGG 0.325310 8_2:-69508277 None:intergenic
CTATTGATGGCAGACCAATT+AGG 0.330217 8_2:+69508122 Msa1265300:CDS
CAAATCAGAAAAGGCTCAAA+TGG 0.340400 8_2:+69508398 Msa1265300:CDS
CTGTCTTTAGACAGAACTTC+TGG 0.361469 8_2:+69507110 Msa1265300:CDS
ATGCAAATTAAACTTGTTCC+TGG 0.361969 8_2:+69507179 Msa1265300:CDS
GAAATAGACTTTGAATTCTT+GGG 0.378927 8_2:+69507356 Msa1265300:CDS
ATTCCCTCAGGGTCTCCCTT+TGG 0.410581 8_2:+69508468 Msa1265300:CDS
TTAGACAGAACTTCTGGCTC+TGG 0.415840 8_2:+69507116 Msa1265300:CDS
GTTCTCTGTCCCCTTTGCCT+AGG 0.418397 8_2:-69507424 None:intergenic
TTCTCTGTCCCCTTTGCCTA+GGG 0.435604 8_2:-69507423 None:intergenic
GTCTGTGGAATGCTGATGAT+TGG 0.441709 8_2:+69508212 Msa1265300:CDS
ACTCTTCTTCAGACAATGCT+TGG 0.460725 8_2:+69508353 Msa1265300:CDS
ATGTGTACACCCTAGGCAAA+GGG 0.461356 8_2:+69507414 Msa1265300:CDS
TAGGTATGAAAATCTGTAGT+TGG 0.461780 8_2:-69507470 None:intergenic
TCCTCTTAATTCTCATGACT+TGG 0.468978 8_2:-69508506 None:intergenic
AATTAGGGAATTCAAGAACT+TGG 0.476768 8_2:+69508138 Msa1265300:CDS
ACCAAGTCATGAGAATTAAG+AGG 0.478850 8_2:+69508505 Msa1265300:exon
ATGAAGATGTTGGTATCACT+TGG 0.481063 8_2:+69507042 Msa1265300:CDS
AGACTTGAATATAATCTCAT+TGG 0.482257 8_2:-69508193 None:intergenic
AATGATAAGCAAACGAAAGA+TGG 0.487788 8_2:-69508581 None:intergenic
ATTGGACAAAACACAACCAT+TGG 0.488431 8_2:-69508308 None:intergenic
GTTGGTATCACTTGGGGAGA+TGG 0.496124 8_2:+69507050 Msa1265300:CDS
CTTGTTCCTGGAAATTCAGC+TGG 0.496538 8_2:+69507191 Msa1265300:CDS
TAGATTCTACAAATCAGAAA+AGG 0.498615 8_2:+69508389 Msa1265300:CDS
TGACCTTAAACGATTCCCTC+AGG 0.499561 8_2:+69508456 Msa1265300:CDS
TTTGCAAGAAGAAATTCCAT+TGG 0.499781 8_2:-69508326 None:intergenic
ACATTGGTATGAACTATGTA+AGG 0.504779 8_2:-69507395 None:intergenic
AGCATTGTCTGAAGAAGAGT+TGG 0.506803 8_2:-69508350 None:intergenic
AGGAGTCCAGAGAAAAGAAT+AGG 0.508310 8_2:-69507489 None:intergenic
TTGGTATCACTTGGGGAGAT+GGG 0.509808 8_2:+69507051 Msa1265300:CDS
GAAACTTACACAACATGTGC+AGG 0.510005 8_2:-69507509 None:intergenic
ACCGTGCCAGCTGAATTTCC+AGG 0.514387 8_2:-69507197 None:intergenic
TTTAGGAACTTCAAAGCCAA+TGG 0.515491 8_2:+69508292 Msa1265300:CDS
ACGTTCAGAAGGGTCATTGT+GGG 0.534482 8_2:+69507331 Msa1265300:CDS
AAATCAGAAAAGGCTCAAAT+GGG 0.537276 8_2:+69508399 Msa1265300:CDS
TTAATTCTCATGACTTGGTA+CGG 0.539231 8_2:-69508501 None:intergenic
TCTGTGGAATGCTGATGATT+GGG 0.547719 8_2:+69508213 Msa1265300:CDS
TCCTGGAAATTCAGCTGGCA+CGG 0.548180 8_2:+69507196 Msa1265300:CDS
GCATTGCAGTTACGTTCAGA+AGG 0.549452 8_2:+69507320 Msa1265300:intron
ATCACTTGGGGAGATGGGAG+AGG 0.549542 8_2:+69507056 Msa1265300:CDS
TGAAGATGTTGGTATCACTT+GGG 0.555970 8_2:+69507043 Msa1265300:CDS
TTTGCCTAGGGTGTACACAT+TGG 0.559431 8_2:-69507411 None:intergenic
GTGGACTTGTGAAAACAGAT+TGG 0.561998 8_2:+69508245 Msa1265300:CDS
TACGGACAGTGCATTCCAAA+GGG 0.563184 8_2:-69508483 None:intergenic
AATGTGTACACCCTAGGCAA+AGG 0.565362 8_2:+69507413 Msa1265300:CDS
TGAGATTATATTCAAGTCTG+TGG 0.566225 8_2:+69508197 Msa1265300:CDS
TACAAGTAATAAACTACTAG+AGG 0.585236 8_2:-69508535 None:intergenic
GTACGGACAGTGCATTCCAA+AGG 0.598915 8_2:-69508484 None:intergenic
CATACCAATGTGTACACCCT+AGG 0.600781 8_2:+69507407 Msa1265300:CDS
GAAGATGTTGGTATCACTTG+GGG 0.602744 8_2:+69507044 Msa1265300:CDS
GACCTTAAACGATTCCCTCA+GGG 0.603618 8_2:+69508457 Msa1265300:CDS
GATGATTGGGCAACAAGAGG+TGG 0.606066 8_2:+69508226 Msa1265300:CDS
TTCAAGAACTTGGAGAGTGA+AGG 0.610761 8_2:+69508148 Msa1265300:CDS
GAATTCTTGGGAAATTTGAG+TGG 0.630242 8_2:+69507368 Msa1265300:CDS
GGAAACTTATATGAAGATGT+TGG 0.631816 8_2:+69507032 Msa1265300:CDS
CATTGCAGTTACGTTCAGAA+GGG 0.632405 8_2:+69507321 Msa1265300:intron
TACGTTCAGAAGGGTCATTG+TGG 0.637977 8_2:+69507330 Msa1265300:CDS
ATTCCAAAGGGAGACCCTGA+GGG 0.664464 8_2:-69508471 None:intergenic
CATTCCAAAGGGAGACCCTG+AGG 0.667653 8_2:-69508472 None:intergenic
AGAGGTAAGATTGTGAACAA+TGG 0.680526 8_2:+69507074 Msa1265300:CDS
GCTGATGATTGGGCAACAAG+AGG 0.682230 8_2:+69508223 Msa1265300:CDS
TGTGTACACCCTAGGCAAAG+GGG 0.687067 8_2:+69507415 Msa1265300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACATTAAACATATTAATA+AGG - chr8_2:69507256-69507275 None:intergenic 10.0%
!!! TAATATGTTTAATGTTTTTT+AGG + chr8_2:69507259-69507278 Msa1265300:intron 10.0%
!!! AATATGTTTAATGTTTTTTA+GGG + chr8_2:69507260-69507279 Msa1265300:intron 10.0%
!!! TACATATTTTCAAAAATTTA+AGG - chr8_2:69507719-69507738 None:intergenic 10.0%
!!! TTAAATTTTTGAAAATATGT+AGG + chr8_2:69507718-69507737 Msa1265300:intron 10.0%
!!! TAAATTTTTGAAAATATGTA+GGG + chr8_2:69507719-69507738 Msa1265300:intron 10.0%
!! AAACATTAAACATATTAATA+AGG - chr8_2:69507256-69507275 None:intergenic 10.0%
!!! TAATATGTTTAATGTTTTTT+AGG + chr8_2:69507259-69507278 Msa1265300:intron 10.0%
!!! AATATGTTTAATGTTTTTTA+GGG + chr8_2:69507260-69507279 Msa1265300:intron 10.0%
!!! TACATATTTTCAAAAATTTA+AGG - chr8_2:69507719-69507738 None:intergenic 10.0%
!!! TTAAATTTTTGAAAATATGT+AGG + chr8_2:69507718-69507737 Msa1265300:intron 10.0%
!!! TAAATTTTTGAAAATATGTA+GGG + chr8_2:69507719-69507738 Msa1265300:intron 10.0%
!!! TTATTTTCAAATTCTTTGTT+TGG + chr8_2:69507547-69507566 Msa1265300:intron 15.0%
!! ATTTAAATATAATAAGAGAG+TGG + chr8_2:69507656-69507675 Msa1265300:intron 15.0%
!! TATTTATCAAAATTAAGGAT+TGG - chr8_2:69507746-69507765 None:intergenic 15.0%
!!! TAAGAATTGTAATTTTTTTG+TGG + chr8_2:69507953-69507972 Msa1265300:intron 15.0%
!!! GATCATGTAAATTTTTATTT+TGG - chr8_2:69508046-69508065 None:intergenic 15.0%
!!! TTATTTTCAAATTCTTTGTT+TGG + chr8_2:69507547-69507566 Msa1265300:intron 15.0%
!! ATTTAAATATAATAAGAGAG+TGG + chr8_2:69507656-69507675 Msa1265300:intron 15.0%
!! TATTTATCAAAATTAAGGAT+TGG - chr8_2:69507746-69507765 None:intergenic 15.0%
!!! TAAGAATTGTAATTTTTTTG+TGG + chr8_2:69507953-69507972 Msa1265300:intron 15.0%
!!! GATCATGTAAATTTTTATTT+TGG - chr8_2:69508046-69508065 None:intergenic 15.0%
!! TCCAATAATCAATATCTTTA+TGG + chr8_2:69507146-69507165 Msa1265300:CDS 20.0%
!!! TCCATAAAGATATTGATTAT+TGG - chr8_2:69507150-69507169 None:intergenic 20.0%
!!! GGATCAAATTTCAAATTTTA+AGG + chr8_2:69507677-69507696 Msa1265300:intron 20.0%
!! AACAAATTATATGTACCAAT+TGG + chr8_2:69507927-69507946 Msa1265300:intron 20.0%
!! TCCAATAATCAATATCTTTA+TGG + chr8_2:69507146-69507165 Msa1265300:CDS 20.0%
!!! TCCATAAAGATATTGATTAT+TGG - chr8_2:69507150-69507169 None:intergenic 20.0%
!!! GGATCAAATTTCAAATTTTA+AGG + chr8_2:69507677-69507696 Msa1265300:intron 20.0%
!! AACAAATTATATGTACCAAT+TGG + chr8_2:69507927-69507946 Msa1265300:intron 20.0%
! TGAAATAGACTTTGAATTCT+TGG + chr8_2:69507355-69507374 Msa1265300:CDS 25.0%
! GAAATAGACTTTGAATTCTT+GGG + chr8_2:69507356-69507375 Msa1265300:CDS 25.0%
! GAGAACAACAATTCTATTTA+TGG + chr8_2:69507441-69507460 Msa1265300:CDS 25.0%
!!! TTCAAATTTTAAGGAAGTTG+AGG + chr8_2:69507686-69507705 Msa1265300:intron 25.0%
!!! TCAAATTTTAAGGAAGTTGA+GGG + chr8_2:69507687-69507706 Msa1265300:intron 25.0%
!!! TTGTGTACACAGTATTTTTT+TGG + chr8_2:69507808-69507827 Msa1265300:intron 25.0%
! GACAATGCATAATATATACA+AGG - chr8_2:69507859-69507878 None:intergenic 25.0%
! TTACAATTCTTATGTCCAAT+TGG - chr8_2:69507945-69507964 None:intergenic 25.0%
!! GTTTTCAGATTTTCTATTGA+TGG + chr8_2:69508109-69508128 Msa1265300:intron 25.0%
! AGACTTGAATATAATCTCAT+TGG - chr8_2:69508196-69508215 None:intergenic 25.0%
! TAGATTCTACAAATCAGAAA+AGG + chr8_2:69508389-69508408 Msa1265300:CDS 25.0%
! TACAAGTAATAAACTACTAG+AGG - chr8_2:69508538-69508557 None:intergenic 25.0%
! TGAAATAGACTTTGAATTCT+TGG + chr8_2:69507355-69507374 Msa1265300:CDS 25.0%
! GAAATAGACTTTGAATTCTT+GGG + chr8_2:69507356-69507375 Msa1265300:CDS 25.0%
! GAGAACAACAATTCTATTTA+TGG + chr8_2:69507441-69507460 Msa1265300:CDS 25.0%
!!! TTCAAATTTTAAGGAAGTTG+AGG + chr8_2:69507686-69507705 Msa1265300:intron 25.0%
!!! TCAAATTTTAAGGAAGTTGA+GGG + chr8_2:69507687-69507706 Msa1265300:intron 25.0%
!!! TTGTGTACACAGTATTTTTT+TGG + chr8_2:69507808-69507827 Msa1265300:intron 25.0%
! GACAATGCATAATATATACA+AGG - chr8_2:69507859-69507878 None:intergenic 25.0%
! TTACAATTCTTATGTCCAAT+TGG - chr8_2:69507945-69507964 None:intergenic 25.0%
!! GTTTTCAGATTTTCTATTGA+TGG + chr8_2:69508109-69508128 Msa1265300:intron 25.0%
! AGACTTGAATATAATCTCAT+TGG - chr8_2:69508196-69508215 None:intergenic 25.0%
! TAGATTCTACAAATCAGAAA+AGG + chr8_2:69508389-69508408 Msa1265300:CDS 25.0%
! TACAAGTAATAAACTACTAG+AGG - chr8_2:69508538-69508557 None:intergenic 25.0%
GGAAACTTATATGAAGATGT+TGG + chr8_2:69507032-69507051 Msa1265300:CDS 30.0%
! ATGCAAATTAAACTTGTTCC+TGG + chr8_2:69507179-69507198 Msa1265300:CDS 30.0%
ACATTGGTATGAACTATGTA+AGG - chr8_2:69507398-69507417 None:intergenic 30.0%
TAGGTATGAAAATCTGTAGT+TGG - chr8_2:69507473-69507492 None:intergenic 30.0%
! TTCATACCTATTCTTTTCTC+TGG + chr8_2:69507483-69507502 Msa1265300:CDS 30.0%
!!! TGTACACAGTATTTTTTTGG+TGG + chr8_2:69507811-69507830 Msa1265300:intron 30.0%
CATAATATATACAAGGTCTG+AGG - chr8_2:69507852-69507871 None:intergenic 30.0%
! TGACTTATGTGATTTGTCTT+TGG + chr8_2:69508087-69508106 Msa1265300:intron 30.0%
AAGTTCTTGAATTCCCTAAT+TGG - chr8_2:69508139-69508158 None:intergenic 30.0%
AATTAGGGAATTCAAGAACT+TGG + chr8_2:69508138-69508157 Msa1265300:CDS 30.0%
TGAGATTATATTCAAGTCTG+TGG + chr8_2:69508197-69508216 Msa1265300:CDS 30.0%
TTCCTAAAAGAAGCAGTAAA+TGG - chr8_2:69508280-69508299 None:intergenic 30.0%
TTTGCAAGAAGAAATTCCAT+TGG - chr8_2:69508329-69508348 None:intergenic 30.0%
AAATCAGAAAAGGCTCAAAT+GGG + chr8_2:69508399-69508418 Msa1265300:CDS 30.0%
!! TTAATTCTCATGACTTGGTA+CGG - chr8_2:69508504-69508523 None:intergenic 30.0%
AATGATAAGCAAACGAAAGA+TGG - chr8_2:69508584-69508603 None:intergenic 30.0%
GGAAACTTATATGAAGATGT+TGG + chr8_2:69507032-69507051 Msa1265300:CDS 30.0%
! ATGCAAATTAAACTTGTTCC+TGG + chr8_2:69507179-69507198 Msa1265300:CDS 30.0%
ACATTGGTATGAACTATGTA+AGG - chr8_2:69507398-69507417 None:intergenic 30.0%
TAGGTATGAAAATCTGTAGT+TGG - chr8_2:69507473-69507492 None:intergenic 30.0%
! TTCATACCTATTCTTTTCTC+TGG + chr8_2:69507483-69507502 Msa1265300:CDS 30.0%
!!! TGTACACAGTATTTTTTTGG+TGG + chr8_2:69507811-69507830 Msa1265300:intron 30.0%
CATAATATATACAAGGTCTG+AGG - chr8_2:69507852-69507871 None:intergenic 30.0%
! TGACTTATGTGATTTGTCTT+TGG + chr8_2:69508087-69508106 Msa1265300:intron 30.0%
AAGTTCTTGAATTCCCTAAT+TGG - chr8_2:69508139-69508158 None:intergenic 30.0%
AATTAGGGAATTCAAGAACT+TGG + chr8_2:69508138-69508157 Msa1265300:CDS 30.0%
TGAGATTATATTCAAGTCTG+TGG + chr8_2:69508197-69508216 Msa1265300:CDS 30.0%
TTCCTAAAAGAAGCAGTAAA+TGG - chr8_2:69508280-69508299 None:intergenic 30.0%
TTTGCAAGAAGAAATTCCAT+TGG - chr8_2:69508329-69508348 None:intergenic 30.0%
AAATCAGAAAAGGCTCAAAT+GGG + chr8_2:69508399-69508418 Msa1265300:CDS 30.0%
!! TTAATTCTCATGACTTGGTA+CGG - chr8_2:69508504-69508523 None:intergenic 30.0%
AATGATAAGCAAACGAAAGA+TGG - chr8_2:69508584-69508603 None:intergenic 30.0%
ATGAAGATGTTGGTATCACT+TGG + chr8_2:69507042-69507061 Msa1265300:CDS 35.0%
TGAAGATGTTGGTATCACTT+GGG + chr8_2:69507043-69507062 Msa1265300:CDS 35.0%
AGAGGTAAGATTGTGAACAA+TGG + chr8_2:69507074-69507093 Msa1265300:CDS 35.0%
GAATTCTTGGGAAATTTGAG+TGG + chr8_2:69507368-69507387 Msa1265300:CDS 35.0%
!!! ACACAGTATTTTTTTGGTGG+TGG + chr8_2:69507814-69507833 Msa1265300:intron 35.0%
!! CATAAGTCAAGTTGATCAAG+AGG - chr8_2:69508076-69508095 None:intergenic 35.0%
! TATTGATGGCAGACCAATTA+GGG + chr8_2:69508123-69508142 Msa1265300:CDS 35.0%
! CTCCATTTACTGCTTCTTTT+AGG + chr8_2:69508275-69508294 Msa1265300:CDS 35.0%
TTTAGGAACTTCAAAGCCAA+TGG + chr8_2:69508292-69508311 Msa1265300:CDS 35.0%
ATTGGACAAAACACAACCAT+TGG - chr8_2:69508311-69508330 None:intergenic 35.0%
! AATGGTTGTGTTTTGTCCAA+TGG + chr8_2:69508310-69508329 Msa1265300:CDS 35.0%
CAAATCAGAAAAGGCTCAAA+TGG + chr8_2:69508398-69508417 Msa1265300:CDS 35.0%
ACCAAGTCATGAGAATTAAG+AGG + chr8_2:69508505-69508524 Msa1265300:exon 35.0%
TCCTCTTAATTCTCATGACT+TGG - chr8_2:69508509-69508528 None:intergenic 35.0%
ATGAAGATGTTGGTATCACT+TGG + chr8_2:69507042-69507061 Msa1265300:CDS 35.0%
TGAAGATGTTGGTATCACTT+GGG + chr8_2:69507043-69507062 Msa1265300:CDS 35.0%
AGAGGTAAGATTGTGAACAA+TGG + chr8_2:69507074-69507093 Msa1265300:CDS 35.0%
GAATTCTTGGGAAATTTGAG+TGG + chr8_2:69507368-69507387 Msa1265300:CDS 35.0%
!!! ACACAGTATTTTTTTGGTGG+TGG + chr8_2:69507814-69507833 Msa1265300:intron 35.0%
!! CATAAGTCAAGTTGATCAAG+AGG - chr8_2:69508076-69508095 None:intergenic 35.0%
! TATTGATGGCAGACCAATTA+GGG + chr8_2:69508123-69508142 Msa1265300:CDS 35.0%
! CTCCATTTACTGCTTCTTTT+AGG + chr8_2:69508275-69508294 Msa1265300:CDS 35.0%
TTTAGGAACTTCAAAGCCAA+TGG + chr8_2:69508292-69508311 Msa1265300:CDS 35.0%
ATTGGACAAAACACAACCAT+TGG - chr8_2:69508311-69508330 None:intergenic 35.0%
! AATGGTTGTGTTTTGTCCAA+TGG + chr8_2:69508310-69508329 Msa1265300:CDS 35.0%
CAAATCAGAAAAGGCTCAAA+TGG + chr8_2:69508398-69508417 Msa1265300:CDS 35.0%
ACCAAGTCATGAGAATTAAG+AGG + chr8_2:69508505-69508524 Msa1265300:exon 35.0%
TCCTCTTAATTCTCATGACT+TGG - chr8_2:69508509-69508528 None:intergenic 35.0%
GAAGATGTTGGTATCACTTG+GGG + chr8_2:69507044-69507063 Msa1265300:CDS 40.0%
CTGTCTTTAGACAGAACTTC+TGG + chr8_2:69507110-69507129 Msa1265300:CDS 40.0%
CATTGCAGTTACGTTCAGAA+GGG + chr8_2:69507321-69507340 Msa1265300:intron 40.0%
AGGAGTCCAGAGAAAAGAAT+AGG - chr8_2:69507492-69507511 None:intergenic 40.0%
GAAACTTACACAACATGTGC+AGG - chr8_2:69507512-69507531 None:intergenic 40.0%
!!! AGTATTTTTTTGGTGGTGGC+AGG + chr8_2:69507818-69507837 Msa1265300:intron 40.0%
TGTCGATATCAACTGAGCTA+AGG + chr8_2:69507875-69507894 Msa1265300:intron 40.0%
TATCAACTGAGCTAAGGTCA+CGG + chr8_2:69507881-69507900 Msa1265300:intron 40.0%
! CTATTGATGGCAGACCAATT+AGG + chr8_2:69508122-69508141 Msa1265300:CDS 40.0%
TTCAAGAACTTGGAGAGTGA+AGG + chr8_2:69508148-69508167 Msa1265300:CDS 40.0%
ATTGGCTGCTTCTTTGGATA+TGG - chr8_2:69508178-69508197 None:intergenic 40.0%
! AATCTCATTGGCTGCTTCTT+TGG - chr8_2:69508184-69508203 None:intergenic 40.0%
TCTGTGGAATGCTGATGATT+GGG + chr8_2:69508213-69508232 Msa1265300:CDS 40.0%
GTGGACTTGTGAAAACAGAT+TGG + chr8_2:69508245-69508264 Msa1265300:CDS 40.0%
AGCATTGTCTGAAGAAGAGT+TGG - chr8_2:69508353-69508372 None:intergenic 40.0%
ACTCTTCTTCAGACAATGCT+TGG + chr8_2:69508353-69508372 Msa1265300:CDS 40.0%
GAAGATGTTGGTATCACTTG+GGG + chr8_2:69507044-69507063 Msa1265300:CDS 40.0%
CTGTCTTTAGACAGAACTTC+TGG + chr8_2:69507110-69507129 Msa1265300:CDS 40.0%
CATTGCAGTTACGTTCAGAA+GGG + chr8_2:69507321-69507340 Msa1265300:intron 40.0%
AGGAGTCCAGAGAAAAGAAT+AGG - chr8_2:69507492-69507511 None:intergenic 40.0%
GAAACTTACACAACATGTGC+AGG - chr8_2:69507512-69507531 None:intergenic 40.0%
!!! AGTATTTTTTTGGTGGTGGC+AGG + chr8_2:69507818-69507837 Msa1265300:intron 40.0%
TGTCGATATCAACTGAGCTA+AGG + chr8_2:69507875-69507894 Msa1265300:intron 40.0%
TATCAACTGAGCTAAGGTCA+CGG + chr8_2:69507881-69507900 Msa1265300:intron 40.0%
! CTATTGATGGCAGACCAATT+AGG + chr8_2:69508122-69508141 Msa1265300:CDS 40.0%
TTCAAGAACTTGGAGAGTGA+AGG + chr8_2:69508148-69508167 Msa1265300:CDS 40.0%
ATTGGCTGCTTCTTTGGATA+TGG - chr8_2:69508178-69508197 None:intergenic 40.0%
! AATCTCATTGGCTGCTTCTT+TGG - chr8_2:69508184-69508203 None:intergenic 40.0%
TCTGTGGAATGCTGATGATT+GGG + chr8_2:69508213-69508232 Msa1265300:CDS 40.0%
GTGGACTTGTGAAAACAGAT+TGG + chr8_2:69508245-69508264 Msa1265300:CDS 40.0%
AGCATTGTCTGAAGAAGAGT+TGG - chr8_2:69508353-69508372 None:intergenic 40.0%
ACTCTTCTTCAGACAATGCT+TGG + chr8_2:69508353-69508372 Msa1265300:CDS 40.0%
TTGGTATCACTTGGGGAGAT+GGG + chr8_2:69507051-69507070 Msa1265300:CDS 45.0%
!! TTAGACAGAACTTCTGGCTC+TGG + chr8_2:69507116-69507135 Msa1265300:CDS 45.0%
CTTGTTCCTGGAAATTCAGC+TGG + chr8_2:69507191-69507210 Msa1265300:CDS 45.0%
GCATTGCAGTTACGTTCAGA+AGG + chr8_2:69507320-69507339 Msa1265300:intron 45.0%
TACGTTCAGAAGGGTCATTG+TGG + chr8_2:69507330-69507349 Msa1265300:CDS 45.0%
ACGTTCAGAAGGGTCATTGT+GGG + chr8_2:69507331-69507350 Msa1265300:CDS 45.0%
CATACCAATGTGTACACCCT+AGG + chr8_2:69507407-69507426 Msa1265300:CDS 45.0%
TTTGCCTAGGGTGTACACAT+TGG - chr8_2:69507414-69507433 None:intergenic 45.0%
AATGTGTACACCCTAGGCAA+AGG + chr8_2:69507413-69507432 Msa1265300:CDS 45.0%
ATGTGTACACCCTAGGCAAA+GGG + chr8_2:69507414-69507433 Msa1265300:CDS 45.0%
GTCTGTGGAATGCTGATGAT+TGG + chr8_2:69508212-69508231 Msa1265300:CDS 45.0%
TGACCTTAAACGATTCCCTC+AGG + chr8_2:69508456-69508475 Msa1265300:CDS 45.0%
GACCTTAAACGATTCCCTCA+GGG + chr8_2:69508457-69508476 Msa1265300:CDS 45.0%
TACGGACAGTGCATTCCAAA+GGG - chr8_2:69508486-69508505 None:intergenic 45.0%
TTGGTATCACTTGGGGAGAT+GGG + chr8_2:69507051-69507070 Msa1265300:CDS 45.0%
!! TTAGACAGAACTTCTGGCTC+TGG + chr8_2:69507116-69507135 Msa1265300:CDS 45.0%
CTTGTTCCTGGAAATTCAGC+TGG + chr8_2:69507191-69507210 Msa1265300:CDS 45.0%
GCATTGCAGTTACGTTCAGA+AGG + chr8_2:69507320-69507339 Msa1265300:intron 45.0%
TACGTTCAGAAGGGTCATTG+TGG + chr8_2:69507330-69507349 Msa1265300:CDS 45.0%
ACGTTCAGAAGGGTCATTGT+GGG + chr8_2:69507331-69507350 Msa1265300:CDS 45.0%
CATACCAATGTGTACACCCT+AGG + chr8_2:69507407-69507426 Msa1265300:CDS 45.0%
TTTGCCTAGGGTGTACACAT+TGG - chr8_2:69507414-69507433 None:intergenic 45.0%
AATGTGTACACCCTAGGCAA+AGG + chr8_2:69507413-69507432 Msa1265300:CDS 45.0%
ATGTGTACACCCTAGGCAAA+GGG + chr8_2:69507414-69507433 Msa1265300:CDS 45.0%
GTCTGTGGAATGCTGATGAT+TGG + chr8_2:69508212-69508231 Msa1265300:CDS 45.0%
TGACCTTAAACGATTCCCTC+AGG + chr8_2:69508456-69508475 Msa1265300:CDS 45.0%
GACCTTAAACGATTCCCTCA+GGG + chr8_2:69508457-69508476 Msa1265300:CDS 45.0%
TACGGACAGTGCATTCCAAA+GGG - chr8_2:69508486-69508505 None:intergenic 45.0%
!!! ATTTTTGAAATTTATAAAAA+TGG - chr8_2:69507624-69507643 None:intergenic 5.0%
!! ATATTTATTTATCAAAATTA+AGG - chr8_2:69507751-69507770 None:intergenic 5.0%
!!! ATTTTTGAAATTTATAAAAA+TGG - chr8_2:69507624-69507643 None:intergenic 5.0%
!! ATATTTATTTATCAAAATTA+AGG - chr8_2:69507751-69507770 None:intergenic 5.0%
GTTGGTATCACTTGGGGAGA+TGG + chr8_2:69507050-69507069 Msa1265300:CDS 50.0%
TCCTGGAAATTCAGCTGGCA+CGG + chr8_2:69507196-69507215 Msa1265300:CDS 50.0%
TGTGTACACCCTAGGCAAAG+GGG + chr8_2:69507415-69507434 Msa1265300:CDS 50.0%
TTCTCTGTCCCCTTTGCCTA+GGG - chr8_2:69507426-69507445 None:intergenic 50.0%
GCTGATGATTGGGCAACAAG+AGG + chr8_2:69508223-69508242 Msa1265300:CDS 50.0%
GATGATTGGGCAACAAGAGG+TGG + chr8_2:69508226-69508245 Msa1265300:CDS 50.0%
GACCCTGAGGGAATCGTTTA+AGG - chr8_2:69508462-69508481 None:intergenic 50.0%
ATTCCAAAGGGAGACCCTGA+GGG - chr8_2:69508474-69508493 None:intergenic 50.0%
GTACGGACAGTGCATTCCAA+AGG - chr8_2:69508487-69508506 None:intergenic 50.0%
GTTGGTATCACTTGGGGAGA+TGG + chr8_2:69507050-69507069 Msa1265300:CDS 50.0%
TCCTGGAAATTCAGCTGGCA+CGG + chr8_2:69507196-69507215 Msa1265300:CDS 50.0%
TGTGTACACCCTAGGCAAAG+GGG + chr8_2:69507415-69507434 Msa1265300:CDS 50.0%
TTCTCTGTCCCCTTTGCCTA+GGG - chr8_2:69507426-69507445 None:intergenic 50.0%
GCTGATGATTGGGCAACAAG+AGG + chr8_2:69508223-69508242 Msa1265300:CDS 50.0%
GATGATTGGGCAACAAGAGG+TGG + chr8_2:69508226-69508245 Msa1265300:CDS 50.0%
GACCCTGAGGGAATCGTTTA+AGG - chr8_2:69508462-69508481 None:intergenic 50.0%
ATTCCAAAGGGAGACCCTGA+GGG - chr8_2:69508474-69508493 None:intergenic 50.0%
GTACGGACAGTGCATTCCAA+AGG - chr8_2:69508487-69508506 None:intergenic 50.0%
ATCACTTGGGGAGATGGGAG+AGG + chr8_2:69507056-69507075 Msa1265300:CDS 55.0%
ACCGTGCCAGCTGAATTTCC+AGG - chr8_2:69507200-69507219 None:intergenic 55.0%
GTTCTCTGTCCCCTTTGCCT+AGG - chr8_2:69507427-69507446 None:intergenic 55.0%
ATTCCCTCAGGGTCTCCCTT+TGG + chr8_2:69508468-69508487 Msa1265300:CDS 55.0%
CATTCCAAAGGGAGACCCTG+AGG - chr8_2:69508475-69508494 None:intergenic 55.0%
ATCACTTGGGGAGATGGGAG+AGG + chr8_2:69507056-69507075 Msa1265300:CDS 55.0%
ACCGTGCCAGCTGAATTTCC+AGG - chr8_2:69507200-69507219 None:intergenic 55.0%
GTTCTCTGTCCCCTTTGCCT+AGG - chr8_2:69507427-69507446 None:intergenic 55.0%
ATTCCCTCAGGGTCTCCCTT+TGG + chr8_2:69508468-69508487 Msa1265300:CDS 55.0%
CATTCCAAAGGGAGACCCTG+AGG - chr8_2:69508475-69508494 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 69507017 69508643 69507017 ID=Msa1265300;Name=Msa1265300
chr8_2 mRNA 69507017 69508643 69507017 ID=Msa1265300-mRNA-1;Parent=Msa1265300;Name=Msa1265300-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.5|0.66|1|1|1|3|127|264
chr8_2 exon 69507017 69507217 69507017 ID=Msa1265300-mRNA-1:exon:22985;Parent=Msa1265300-mRNA-1
chr8_2 exon 69507329 69507522 69507329 ID=Msa1265300-mRNA-1:exon:22986;Parent=Msa1265300-mRNA-1
chr8_2 exon 69508117 69508643 69508117 ID=Msa1265300-mRNA-1:exon:22987;Parent=Msa1265300-mRNA-1
chr8_2 CDS 69507017 69507217 69507017 ID=Msa1265300-mRNA-1:cds;Parent=Msa1265300-mRNA-1
chr8_2 CDS 69507329 69507522 69507329 ID=Msa1265300-mRNA-1:cds;Parent=Msa1265300-mRNA-1
chr8_2 CDS 69508117 69508516 69508117 ID=Msa1265300-mRNA-1:cds;Parent=Msa1265300-mRNA-1
chr8_2 three_prime_UTR 69508517 69508643 69508517 ID=Msa1265300-mRNA-1:three_prime_utr;Parent=Msa1265300-mRNA-1
Gene Sequence

>Msa1265300

ATGGTAGCTTTTGCTGGAAACTTATATGAAGATGTTGGTATCACTTGGGGAGATGGGAGAGGTAAGATTGTGAACAATGGTCAGCTTCTTACTCTGTCTTTAGACAGAACTTCTGGCTCTGGCTTTCAATCCAATAATCAATATCTTTATGGAAAGATTGACATGCAAATTAAACTTGTTCCTGGAAATTCAGCTGGCACGTTACGTTCAGAAGGGTCATTGTGGGATGAAATAGACTTTGAATTCTTGGGAAATTTGAGTGGTGATCCTTACATAGTTCATACCAATGTGTACACCCTAGGCAAAGGGGACAGAGAACAACAATTCTATTTATGGTTTGATCCAACTACAGATTTTCATACCTATTCTTTTCTCTGGACTCCTGCACATGTTGTATTTTCTATTGATGGCAGACCAATTAGGGAATTCAAGAACTTGGAGAGTGAAGGTGTTCCATATCCAAAGAAGCAGCCAATGAGATTATATTCAAGTCTGTGGAATGCTGATGATTGGGCAACAAGAGGTGGACTTGTGAAAACAGATTGGAGTCAAGCTCCATTTACTGCTTCTTTTAGGAACTTCAAAGCCAATGGTTGTGTTTTGTCCAATGGAATTTCTTCTTGCAAATCCAACTCTTCTTCAGACAATGCTTGGTTGTATCAACAGCTAGATTCTACAAATCAGAAAAGGCTCAAATGGGTGCAGAAGAATTACATGATTTACAATTACTGCAATGACCTTAAACGATTCCCTCAGGGTCTCCCTTTGGAATGCACTGTCCGTACCAAGTCATGA

Protein sequence

>Msa1265300

MVAFAGNLYEDVGITWGDGRGKIVNNGQLLTLSLDRTSGSGFQSNNQYLYGKIDMQIKLVPGNSAGTLRSEGSLWDEIDFEFLGNLSGDPYIVHTNVYTLGKGDREQQFYLWFDPTTDFHTYSFLWTPAHVVFSIDGRPIREFKNLESEGVPYPKKQPMRLYSSLWNADDWATRGGLVKTDWSQAPFTASFRNFKANGCVLSNGISSCKSNSSSDNAWLYQQLDSTNQKRLKWVQKNYMIYNYCNDLKRFPQGLPLECTVRTKS*