Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529270 | XP_003604281.1 | 92.281 | 285 | 19 | 2 | 1 | 283 | 1 | 284 | 0.0 | 538 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529270 | sp|Q9LVD0|RID2_ARATH | 65.744 | 289 | 93 | 2 | 1 | 283 | 1 | 289 | 1.57e-137 | 392 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529270 | G7JEI8 | 92.281 | 285 | 19 | 2 | 1 | 283 | 1 | 284 | 0.0 | 538 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0529270 | Msa0585630 | 0.878694 | 2.283066e-69 | -8.615850e-47 |
| Msa0529270 | Msa0585660 | 0.855275 | 7.038628e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529270 | MtrunA17_Chr4g0001521 | 92.281 | 285 | 19 | 2 | 1 | 283 | 1 | 284 | 0.0 | 538 |
| Msa0529270 | MtrunA17_Chr4g0072031 | 72.165 | 291 | 73 | 3 | 1 | 283 | 1 | 291 | 1.85e-148 | 417 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529270 | AT5G57280.1 | 65.744 | 289 | 93 | 2 | 1 | 283 | 1 | 289 | 1.60e-138 | 392 |
Find 81 sgRNAs with CRISPR-Local
Find 312 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAACATTTCTTGCGTTTC+TGG | 0.060479 | 4_1:+2725910 | Msa0529270:three_prime_UTR |
| TATCTTTGATTTCAGGGTTT+AGG | 0.182180 | 4_1:+2722987 | Msa0529270:intron |
| ATCTTTGATTTCAGGGTTTA+GGG | 0.182277 | 4_1:+2722988 | Msa0529270:intron |
| AATTTAATTGTTACATTTCA+TGG | 0.202021 | 4_1:+2725994 | Msa0529270:three_prime_UTR |
| TTCCCGTAACATTGAAATTC+AGG | 0.224195 | 4_1:+2721721 | Msa0529270:CDS |
| GTTTGTATACTAATATTCTA+TGG | 0.282409 | 4_1:+2726056 | Msa0529270:three_prime_UTR |
| GCAATGAAAGCTGGATTTAC+TGG | 0.283729 | 4_1:+2723595 | Msa0529270:CDS |
| GTAAATCCAGCTTTCATTGC+AGG | 0.296762 | 4_1:-2723592 | None:intergenic |
| ATTTGTCAAGCATTTGTATA+AGG | 0.304310 | 4_1:-2723506 | None:intergenic |
| CATCGGTATATCTGCCATTC+AGG | 0.313191 | 4_1:+2723037 | Msa0529270:CDS |
| GCAAGAAATGTTCAACATTA+AGG | 0.324321 | 4_1:-2725902 | None:intergenic |
| CGACCAGTGTACTTGGTATC+TGG | 0.329329 | 4_1:-2725841 | None:intergenic |
| TTCAATGTTACGGGAATTAG+AGG | 0.341768 | 4_1:-2721714 | None:intergenic |
| CCGTTTCCGACCAGTGTACT+TGG | 0.346432 | 4_1:-2725848 | None:intergenic |
| GGGATATAGTGGTGGATTAT+CGG | 0.357209 | 4_1:+2723617 | Msa0529270:CDS |
| GACCCATGTCACCGAGTAAA+AGG | 0.358459 | 4_1:-2722322 | None:intergenic |
| AAACCTGAATTTCAATGTTA+CGG | 0.373267 | 4_1:-2721724 | None:intergenic |
| CAGGGTTTAGGGCTTCGTTT+TGG | 0.382986 | 4_1:+2722999 | Msa0529270:intron |
| AACCTGAATTTCAATGTTAC+GGG | 0.383633 | 4_1:-2721723 | None:intergenic |
| CGCATTGGAGCGTGAGGTTG+AGG | 0.393884 | 4_1:+2722295 | Msa0529270:CDS |
| GGATATAGTGGTGGATTATC+GGG | 0.407688 | 4_1:+2723618 | Msa0529270:CDS |
| ACCAGAGGCGGTTGCTCCAC+CGG | 0.415792 | 4_1:+2721655 | Msa0529270:CDS |
| TCCGGTGGAGCAACCGCCTC+TGG | 0.421136 | 4_1:-2721656 | None:intergenic |
| TAACTTAGGAACACCGTCAT+TGG | 0.426115 | 4_1:-2721859 | None:intergenic |
| TTATATTTCTGTTTCTTCCA+AGG | 0.434075 | 4_1:-2725745 | None:intergenic |
| AGGGAAGGGAATGGATAAAG+AGG | 0.451166 | 4_1:+2725779 | Msa0529270:CDS |
| GAAATATAATAAGAACGAAA+AGG | 0.457776 | 4_1:+2725759 | Msa0529270:CDS |
| TTTAAGTTATTTAATTGTAT+CGG | 0.459049 | 4_1:+2726102 | Msa0529270:three_prime_UTR |
| AGCAGTATTTCAAGTGTATC+CGG | 0.461795 | 4_1:+2723537 | Msa0529270:CDS |
| CAATGAAAGCTGGATTTACT+GGG | 0.464031 | 4_1:+2723596 | Msa0529270:CDS |
| TTCAATGACTGAGCGAGCAC+TGG | 0.469446 | 4_1:+2721821 | Msa0529270:CDS |
| TGGATTTACTGGGGATATAG+TGG | 0.471114 | 4_1:+2723606 | Msa0529270:CDS |
| CACAGAGAGTGGACACCATT+GGG | 0.471845 | 4_1:+2722135 | Msa0529270:CDS |
| TTTACTCGGTGACATGGGTC+AGG | 0.486959 | 4_1:+2722325 | Msa0529270:CDS |
| AAGGAGCAGATGAGAAGAAG+AGG | 0.488596 | 4_1:+2725805 | Msa0529270:CDS |
| TTATACAAATGCTTGACAAA+TGG | 0.490254 | 4_1:+2723508 | Msa0529270:CDS |
| CTTGCAACATATTTGACTGA+TGG | 0.493604 | 4_1:-2725959 | None:intergenic |
| GACATTGCACCCTCAATGCT+TGG | 0.507243 | 4_1:+2722166 | Msa0529270:CDS |
| AAATATAATAAGAACGAAAA+GGG | 0.511948 | 4_1:+2725760 | Msa0529270:CDS |
| AACTTAGGAACACCGTCATT+GGG | 0.512998 | 4_1:-2721858 | None:intergenic |
| TTGAGTCCTGCAATGAAAGC+TGG | 0.520754 | 4_1:+2723586 | Msa0529270:CDS |
| CCAAGTACACTGGTCGGAAA+CGG | 0.520993 | 4_1:+2725848 | Msa0529270:CDS |
| CCAATGTCAAGGAGTAACTT+AGG | 0.523073 | 4_1:-2721873 | None:intergenic |
| TCACAGAGAGTGGACACCAT+TGG | 0.529338 | 4_1:+2722134 | Msa0529270:CDS |
| GCATTGGAGCGTGAGGTTGA+GGG | 0.531379 | 4_1:+2722296 | Msa0529270:CDS |
| AGAACGAAAAGGGAAGGGAA+TGG | 0.533720 | 4_1:+2725770 | Msa0529270:CDS |
| ACTAGCATACCAAGCATTGA+GGG | 0.538511 | 4_1:-2722175 | None:intergenic |
| TTAACTTGTAGATATCGCAT+TGG | 0.541703 | 4_1:+2722280 | Msa0529270:intron |
| TTATCTAAAGCAAACCTGAA+TGG | 0.544627 | 4_1:-2723051 | None:intergenic |
| GGAATGTTTGATGGGGCCAT+CGG | 0.547297 | 4_1:+2723020 | Msa0529270:CDS |
| ATAATAAGAACGAAAAGGGA+AGG | 0.547716 | 4_1:+2725764 | Msa0529270:CDS |
| TACTAGCATACCAAGCATTG+AGG | 0.548542 | 4_1:-2722176 | None:intergenic |
| CCTAAGTTACTCCTTGACAT+TGG | 0.548757 | 4_1:+2721873 | Msa0529270:CDS |
| GGTTGTGGATCGGGACTTAG+CGG | 0.566307 | 4_1:+2722103 | Msa0529270:intron |
| GCATACTTCAATCTTAGATG+AGG | 0.569225 | 4_1:-2723361 | None:intergenic |
| TAGTGGTGGATTATCGGGAC+AGG | 0.569371 | 4_1:+2723623 | Msa0529270:CDS |
| TCATCGTCGTAAAATATCTC+CGG | 0.571583 | 4_1:-2721674 | None:intergenic |
| CATACTTCAATCTTAGATGA+GGG | 0.573227 | 4_1:-2723360 | None:intergenic |
| GACAGAATACATCTAGCTTG+TGG | 0.593682 | 4_1:+2726078 | Msa0529270:three_prime_UTR |
| GAAATAACATACCAATGTCA+AGG | 0.594135 | 4_1:-2721884 | None:intergenic |
| TAATAAGAACGAAAAGGGAA+GGG | 0.599558 | 4_1:+2725765 | Msa0529270:CDS |
| CTTCTCAATTTACCCAATGA+CGG | 0.600645 | 4_1:+2721846 | Msa0529270:CDS |
| GGAATGGATAAAGAGGAAGA+AGG | 0.613907 | 4_1:+2725786 | Msa0529270:CDS |
| CAGATACCAAGTACACTGGT+CGG | 0.615749 | 4_1:+2725842 | Msa0529270:CDS |
| ATTTACTGGGGATATAGTGG+TGG | 0.619275 | 4_1:+2723609 | Msa0529270:CDS |
| TCGTCGTAAAATATCTCCGG+TGG | 0.621804 | 4_1:-2721671 | None:intergenic |
| GTTAGGTAATGGTCATGTAG+CGG | 0.624903 | 4_1:+2726026 | Msa0529270:three_prime_UTR |
| GAGAGTGGACACCATTGGGT+TGG | 0.626926 | 4_1:+2722139 | Msa0529270:CDS |
| CAATGTCGAGACCAACCCAA+TGG | 0.632121 | 4_1:-2722150 | None:intergenic |
| GATGGGTTCAAGACCAGAGG+CGG | 0.641338 | 4_1:+2721643 | None:intergenic |
| AGATATCGCATTGGAGCGTG+AGG | 0.647913 | 4_1:+2722289 | Msa0529270:intron |
| TCTTAGATGAGGGTTGTGAG+AGG | 0.653129 | 4_1:-2723350 | None:intergenic |
| CAAGAAGTACCCTTGCCCGA+AGG | 0.653794 | 4_1:+2725269 | Msa0529270:CDS |
| CGGGATGGGTTCAAGACCAG+AGG | 0.654002 | 4_1:+2721640 | None:intergenic |
| CCTCCAGATACCAAGTACAC+TGG | 0.661149 | 4_1:+2725838 | Msa0529270:CDS |
| CCAGTGTACTTGGTATCTGG+AGG | 0.664844 | 4_1:-2725838 | None:intergenic |
| CTGAATGGCAGATATACCGA+TGG | 0.676516 | 4_1:-2723036 | None:intergenic |
| GGTGAGGTAATCACAGAGAG+TGG | 0.681616 | 4_1:+2722124 | Msa0529270:CDS |
| TTTACGACGATGATACAGCA+CGG | 0.708740 | 4_1:+2721684 | Msa0529270:CDS |
| AATGAAAGCTGGATTTACTG+GGG | 0.727081 | 4_1:+2723597 | Msa0529270:CDS |
| TGGATCGGGACTTAGCGGTG+AGG | 0.729748 | 4_1:+2722108 | Msa0529270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAGAATAATTTTACTATT+TGG | + | chr4_1:2723750-2723769 | Msa0529270:intron | 10.0% |
| !!! | AAAGAATAATTTTACTATTT+GGG | + | chr4_1:2723751-2723770 | Msa0529270:intron | 10.0% |
| !!! | TTTAAGTTATTTAATTGTAT+CGG | + | chr4_1:2726102-2726121 | Msa0529270:three_prime_UTR | 10.0% |
| !!! | ATAACTTTAAAAAAAATCAT+CGG | + | chr4_1:2726140-2726159 | Msa0529270:three_prime_UTR | 10.0% |
| !! | TTATATTAGTGTTTATGTAT+AGG | + | chr4_1:2722442-2722461 | Msa0529270:intron | 15.0% |
| !! | TAATAGAAATAAGCTAAATT+TGG | + | chr4_1:2722548-2722567 | Msa0529270:intron | 15.0% |
| !! | ACTAATGTTTATCAATAAAA+TGG | - | chr4_1:2722725-2722744 | None:intergenic | 15.0% |
| !!! | TAGCATATTATTTTTATCAA+GGG | - | chr4_1:2722773-2722792 | None:intergenic | 15.0% |
| !! | AAATATAGTAGTTTAAATGA+AGG | + | chr4_1:2722854-2722873 | Msa0529270:intron | 15.0% |
| !! | AAATGAAGGATAAATATAAT+TGG | + | chr4_1:2722868-2722887 | Msa0529270:intron | 15.0% |
| !! | TATAACCTAAATATATAAAG+GGG | - | chr4_1:2722921-2722940 | None:intergenic | 15.0% |
| !! | CTATAACCTAAATATATAAA+GGG | - | chr4_1:2722922-2722941 | None:intergenic | 15.0% |
| !! | TCTATAACCTAAATATATAA+AGG | - | chr4_1:2722923-2722942 | None:intergenic | 15.0% |
| !! | AGTCAAAAAAAAAAAAATCA+GGG | - | chr4_1:2723297-2723316 | None:intergenic | 15.0% |
| !! | AAGTCAAAAAAAAAAAAATC+AGG | - | chr4_1:2723298-2723317 | None:intergenic | 15.0% |
| !!! | AAAAAAAAGTATGATAGATA+AGG | - | chr4_1:2723393-2723412 | None:intergenic | 15.0% |
| !! | CAAATTAAGAAATGTAATAA+CGG | + | chr4_1:2723954-2723973 | Msa0529270:intron | 15.0% |
| !!! | ATATTTTTTATATTGGTGTA+AGG | + | chr4_1:2724108-2724127 | Msa0529270:intron | 15.0% |
| !!! | TATTTTTTATATTGGTGTAA+GGG | + | chr4_1:2724109-2724128 | Msa0529270:intron | 15.0% |
| !! | AAATATAATAAGAACGAAAA+GGG | + | chr4_1:2725760-2725779 | Msa0529270:CDS | 15.0% |
| !! | AATTTAATTGTTACATTTCA+TGG | + | chr4_1:2725994-2726013 | Msa0529270:three_prime_UTR | 15.0% |
| !!! | TAACTTTAAAAAAAATCATC+GGG | + | chr4_1:2726141-2726160 | Msa0529270:three_prime_UTR | 15.0% |
| !! | GTTTATCAATAAAATGGAAA+AGG | - | chr4_1:2722719-2722738 | None:intergenic | 20.0% |
| !!! | ATATTATTTTTATCAAGGGA+TGG | - | chr4_1:2722769-2722788 | None:intergenic | 20.0% |
| !!! | GTAGCATATTATTTTTATCA+AGG | - | chr4_1:2722774-2722793 | None:intergenic | 20.0% |
| !! | AATATCCCCTTTATATATTT+AGG | + | chr4_1:2722913-2722932 | Msa0529270:intron | 20.0% |
| !! | AAACTACAAAAATTAATGCA+TGG | + | chr4_1:2723085-2723104 | Msa0529270:intron | 20.0% |
| !! | TTAATTGAGTTTCATTTCAT+CGG | - | chr4_1:2723142-2723161 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTGTTCCTTTGTA+GGG | + | chr4_1:2723471-2723490 | Msa0529270:intron | 20.0% |
| !! | ACTATATAGTATTAGAAAAC+AGG | + | chr4_1:2724021-2724040 | Msa0529270:intron | 20.0% |
| !! | CTATATAGTATTAGAAAACA+GGG | + | chr4_1:2724022-2724041 | Msa0529270:intron | 20.0% |
| !! | TAAAGATAGTTGTAAAGAAT+AGG | - | chr4_1:2724711-2724730 | None:intergenic | 20.0% |
| !!! | ACAACTATCTTTAATTTAAG+TGG | + | chr4_1:2724718-2724737 | Msa0529270:intron | 20.0% |
| !!! | TTAAAAGGTGTTACTTTTTT+TGG | - | chr4_1:2724758-2724777 | None:intergenic | 20.0% |
| !! | AACACAAAACTTTATAAAAG+GGG | - | chr4_1:2724787-2724806 | None:intergenic | 20.0% |
| !! | CAACACAAAACTTTATAAAA+GGG | - | chr4_1:2724788-2724807 | None:intergenic | 20.0% |
| !! | ACAACACAAAACTTTATAAA+AGG | - | chr4_1:2724789-2724808 | None:intergenic | 20.0% |
| !! | GAAATATAATAAGAACGAAA+AGG | + | chr4_1:2725759-2725778 | Msa0529270:CDS | 20.0% |
| !! | GTTTGTATACTAATATTCTA+TGG | + | chr4_1:2726056-2726075 | Msa0529270:three_prime_UTR | 20.0% |
| ! | AAACCTGAATTTCAATGTTA+CGG | - | chr4_1:2721727-2721746 | None:intergenic | 25.0% |
| ! | TAAAAAGAAGAAGAAGAAGA+GGG | - | chr4_1:2721751-2721770 | None:intergenic | 25.0% |
| ! | TTAAAAAGAAGAAGAAGAAG+AGG | - | chr4_1:2721752-2721771 | None:intergenic | 25.0% |
| ! | AAACACAACAAATCAGAAAT+CGG | - | chr4_1:2721792-2721811 | None:intergenic | 25.0% |
| !!! | GTTAGCTTAGTTGTTTTTAT+CGG | + | chr4_1:2721913-2721932 | Msa0529270:intron | 25.0% |
| !!! | TGTGAATGTTTGTTTTGTTT+AGG | + | chr4_1:2722082-2722101 | Msa0529270:intron | 25.0% |
| !!! | CTTATTTCTATTAGTTCTCA+AGG | - | chr4_1:2722541-2722560 | None:intergenic | 25.0% |
| !! | TTGTTGTTATGCTCTAATAA+AGG | + | chr4_1:2722683-2722702 | Msa0529270:intron | 25.0% |
| ! | GTATTTGATCAAGTAAACAA+TGG | + | chr4_1:2722822-2722841 | Msa0529270:intron | 25.0% |
| !! | ATAAAGGGGATATTAAGTTT+TGG | - | chr4_1:2722907-2722926 | None:intergenic | 25.0% |
| !! | ACTACTTTATCTTTGATTTC+AGG | + | chr4_1:2722980-2722999 | Msa0529270:intron | 25.0% |
| !! | CTACTTTATCTTTGATTTCA+GGG | + | chr4_1:2722981-2723000 | Msa0529270:intron | 25.0% |
| ! | TGAGTATATTCTTCTTAACA+CGG | - | chr4_1:2723114-2723133 | None:intergenic | 25.0% |
| !!! | CTTTTTTTTTGTTCCTTTGT+AGG | + | chr4_1:2723470-2723489 | Msa0529270:intron | 25.0% |
| ! | ATTTGTCAAGCATTTGTATA+AGG | - | chr4_1:2723509-2723528 | None:intergenic | 25.0% |
| ! | TTATACAAATGCTTGACAAA+TGG | + | chr4_1:2723508-2723527 | Msa0529270:CDS | 25.0% |
| !! | TAATTTTACTATTTGGGCTT+AGG | + | chr4_1:2723757-2723776 | Msa0529270:intron | 25.0% |
| !! | AATTTTACTATTTGGGCTTA+GGG | + | chr4_1:2723758-2723777 | Msa0529270:intron | 25.0% |
| ! | AAAAAAAAAACAGTGATAGG+CGG | - | chr4_1:2723827-2723846 | None:intergenic | 25.0% |
| ! | AGCAAAAAAAAAACAGTGAT+AGG | - | chr4_1:2723830-2723849 | None:intergenic | 25.0% |
| ! | AAAGCTAGTAGCAAATAAAT+AGG | - | chr4_1:2724647-2724666 | None:intergenic | 25.0% |
| !!! | ACTAGCTTTTTCCTAAAAAA+AGG | + | chr4_1:2724658-2724677 | Msa0529270:intron | 25.0% |
| !!! | CTAGCTTTTTCCTAAAAAAA+GGG | + | chr4_1:2724659-2724678 | Msa0529270:intron | 25.0% |
| ! | TTTCCTAAAAAAAGGGATAA+TGG | + | chr4_1:2724666-2724685 | Msa0529270:intron | 25.0% |
| ! | TTCCTAAAAAAAGGGATAAT+GGG | + | chr4_1:2724667-2724686 | Msa0529270:intron | 25.0% |
| ! | TAAAAGGGGAAACAATTAAA+AGG | - | chr4_1:2724773-2724792 | None:intergenic | 25.0% |
| !!! | TTTTTCTTTTTCACCAACTA+TGG | + | chr4_1:2725184-2725203 | Msa0529270:intron | 25.0% |
| ! | TGTGTATTTGATTCATATTC+AGG | + | chr4_1:2725358-2725377 | Msa0529270:intron | 25.0% |
| ! | TTCTTCATAAAGTATGACTT+TGG | + | chr4_1:2725419-2725438 | Msa0529270:intron | 25.0% |
| ! | ATGCACATGTATTAAAATCA+TGG | + | chr4_1:2725593-2725612 | Msa0529270:intron | 25.0% |
| !! | TTATATTTCTGTTTCTTCCA+AGG | - | chr4_1:2725748-2725767 | None:intergenic | 25.0% |
| AACCTGAATTTCAATGTTAC+GGG | - | chr4_1:2721726-2721745 | None:intergenic | 30.0% | |
| GAAATAACATACCAATGTCA+AGG | - | chr4_1:2721887-2721906 | None:intergenic | 30.0% | |
| !!! | TGTTTGTTTTGTTTAGGTTG+TGG | + | chr4_1:2722088-2722107 | Msa0529270:intron | 30.0% |
| !! | TTAACTTGTAGATATCGCAT+TGG | + | chr4_1:2722280-2722299 | Msa0529270:intron | 30.0% |
| ! | GTTGTCAATCATAGATTTTG+TGG | + | chr4_1:2722377-2722396 | Msa0529270:intron | 30.0% |
| ! | ATAACAACAAAGCATTTGGT+TGG | - | chr4_1:2722673-2722692 | None:intergenic | 30.0% |
| ! | TATCTTTGATTTCAGGGTTT+AGG | + | chr4_1:2722987-2723006 | Msa0529270:intron | 30.0% |
| ! | ATCTTTGATTTCAGGGTTTA+GGG | + | chr4_1:2722988-2723007 | Msa0529270:intron | 30.0% |
| !!! | TTCGTTTTGGAATGTTTGAT+GGG | + | chr4_1:2723012-2723031 | Msa0529270:CDS | 30.0% |
| ! | TTATCTAAAGCAAACCTGAA+TGG | - | chr4_1:2723054-2723073 | None:intergenic | 30.0% |
| ACATGTAAACCAAGAAAACT+TGG | - | chr4_1:2723263-2723282 | None:intergenic | 30.0% | |
| !!! | TTTTTGACTTGATAATGCAG+TGG | + | chr4_1:2723308-2723327 | Msa0529270:intron | 30.0% |
| CATACTTCAATCTTAGATGA+GGG | - | chr4_1:2723363-2723382 | None:intergenic | 30.0% | |
| TCCAATGTATGTAAAGCATA+TGG | + | chr4_1:2723414-2723433 | Msa0529270:intron | 30.0% | |
| TCCATATGCTTTACATACAT+TGG | - | chr4_1:2723418-2723437 | None:intergenic | 30.0% | |
| AAAAAAGTTGTAAAGAAGCG+AGG | - | chr4_1:2723457-2723476 | None:intergenic | 30.0% | |
| ATGTAAAAAAAGCCCTACAA+AGG | - | chr4_1:2723486-2723505 | None:intergenic | 30.0% | |
| ATTACTCTTGATGAAACGAA+TGG | - | chr4_1:2723669-2723688 | None:intergenic | 30.0% | |
| TGCAAATACTTTAGCGATAT+GGG | - | chr4_1:2723890-2723909 | None:intergenic | 30.0% | |
| ! | CCTTAAACGACATTTTGAAT+CGG | - | chr4_1:2723924-2723943 | None:intergenic | 30.0% |
| ! | CTTGACAAACAAAAGTTTTG+TGG | + | chr4_1:2724922-2724941 | Msa0529270:intron | 30.0% |
| ATGATATATGTTGACAGTCT+CGG | - | chr4_1:2725135-2725154 | None:intergenic | 30.0% | |
| ! | AGATACTCTTTTCTCTTCTT+AGG | - | chr4_1:2725233-2725252 | None:intergenic | 30.0% |
| TGAATCAAATACACAGATGT+GGG | - | chr4_1:2725353-2725372 | None:intergenic | 30.0% | |
| ATGAATCAAATACACAGATG+TGG | - | chr4_1:2725354-2725373 | None:intergenic | 30.0% | |
| ! | TAGAAGCATAAATCAATACC+AGG | - | chr4_1:2725455-2725474 | None:intergenic | 30.0% |
| GCTATAACCAATTTATGAAC+AGG | - | chr4_1:2725493-2725512 | None:intergenic | 30.0% | |
| TAAGATCTCTCTATCATTGA+TGG | + | chr4_1:2725549-2725568 | Msa0529270:intron | 30.0% | |
| CTTGCGAAAAATGTTAAAAG+AGG | - | chr4_1:2725657-2725676 | None:intergenic | 30.0% | |
| TGAACAAACAAAAATACTGC+AGG | + | chr4_1:2725699-2725718 | Msa0529270:intron | 30.0% | |
| ! | TTTTAGACAGAAATAGACCT+TGG | + | chr4_1:2725728-2725747 | Msa0529270:CDS | 30.0% |
| ATAATAAGAACGAAAAGGGA+AGG | + | chr4_1:2725764-2725783 | Msa0529270:CDS | 30.0% | |
| TAATAAGAACGAAAAGGGAA+GGG | + | chr4_1:2725765-2725784 | Msa0529270:CDS | 30.0% | |
| !!! | GGAAAAATCGCTTTTGATTT+TGG | + | chr4_1:2725869-2725888 | Msa0529270:exon | 30.0% |
| GCAAGAAATGTTCAACATTA+AGG | - | chr4_1:2725905-2725924 | None:intergenic | 30.0% | |
| !!! | TTTCATGGCTTTTTTGTGTT+AGG | + | chr4_1:2726009-2726028 | Msa0529270:three_prime_UTR | 30.0% |
| TCATCGTCGTAAAATATCTC+CGG | - | chr4_1:2721677-2721696 | None:intergenic | 35.0% | |
| TTCAATGTTACGGGAATTAG+AGG | - | chr4_1:2721717-2721736 | None:intergenic | 35.0% | |
| TTCCCGTAACATTGAAATTC+AGG | + | chr4_1:2721721-2721740 | Msa0529270:CDS | 35.0% | |
| CTTCTCAATTTACCCAATGA+CGG | + | chr4_1:2721846-2721865 | Msa0529270:CDS | 35.0% | |
| !!! | GTTTTGTTTAGGTTGTGGAT+CGG | + | chr4_1:2722093-2722112 | Msa0529270:intron | 35.0% |
| !!! | TTTTGTTTAGGTTGTGGATC+GGG | + | chr4_1:2722094-2722113 | Msa0529270:intron | 35.0% |
| !! | GACAACAATTTGCTGAAATC+AGG | - | chr4_1:2722363-2722382 | None:intergenic | 35.0% |
| TGTGGAAAATAGCAGTTTGT+AGG | + | chr4_1:2722395-2722414 | Msa0529270:intron | 35.0% | |
| GTAGGAATTCTGTTATGCTA+TGG | + | chr4_1:2722413-2722432 | Msa0529270:intron | 35.0% | |
| ! | GAGCATAACAACAAAGCATT+TGG | - | chr4_1:2722677-2722696 | None:intergenic | 35.0% |
| ! | ATTTTTATCAAGGGATGGAC+AGG | - | chr4_1:2722764-2722783 | None:intergenic | 35.0% |
| !!! | CTTCGTTTTGGAATGTTTGA+TGG | + | chr4_1:2723011-2723030 | Msa0529270:CDS | 35.0% |
| !!! | TCGTTTTGGAATGTTTGATG+GGG | + | chr4_1:2723013-2723032 | Msa0529270:CDS | 35.0% |
| ACTTATCCCAGATCAAAATG+GGG | - | chr4_1:2723228-2723247 | None:intergenic | 35.0% | |
| GACTTATCCCAGATCAAAAT+GGG | - | chr4_1:2723229-2723248 | None:intergenic | 35.0% | |
| TGACTTATCCCAGATCAAAA+TGG | - | chr4_1:2723230-2723249 | None:intergenic | 35.0% | |
| CCAAGAAAACTTGGTAGAAA+AGG | - | chr4_1:2723254-2723273 | None:intergenic | 35.0% | |
| ! | CCTTTTCTACCAAGTTTTCT+TGG | + | chr4_1:2723251-2723270 | Msa0529270:intron | 35.0% |
| GCATACTTCAATCTTAGATG+AGG | - | chr4_1:2723364-2723383 | None:intergenic | 35.0% | |
| ! | AGCAGTATTTCAAGTGTATC+CGG | + | chr4_1:2723537-2723556 | Msa0529270:CDS | 35.0% |
| CAATGAAAGCTGGATTTACT+GGG | + | chr4_1:2723596-2723615 | Msa0529270:CDS | 35.0% | |
| AATGAAAGCTGGATTTACTG+GGG | + | chr4_1:2723597-2723616 | Msa0529270:CDS | 35.0% | |
| ATTCTTGTGAGAACTGATGA+AGG | + | chr4_1:2723855-2723874 | Msa0529270:intron | 35.0% | |
| GTGCAAATACTTTAGCGATA+TGG | - | chr4_1:2723891-2723910 | None:intergenic | 35.0% | |
| ! | AACGACATTTTGAATCGGTA+TGG | - | chr4_1:2723919-2723938 | None:intergenic | 35.0% |
| ! | CCGATTCAAAATGTCGTTTA+AGG | + | chr4_1:2723921-2723940 | Msa0529270:intron | 35.0% |
| AAGAAAACTAGGCTAAGAGT+GGG | - | chr4_1:2724436-2724455 | None:intergenic | 35.0% | |
| TTGGGTTCTGTTTAGAAGTT+AGG | + | chr4_1:2724499-2724518 | Msa0529270:intron | 35.0% | |
| TGGGTTCTGTTTAGAAGTTA+GGG | + | chr4_1:2724500-2724519 | Msa0529270:intron | 35.0% | |
| !!! | AGCCCATTATCCCTTTTTTT+AGG | - | chr4_1:2724672-2724691 | None:intergenic | 35.0% |
| !! | TAAAAAAAGGGATAATGGGC+TGG | + | chr4_1:2724671-2724690 | Msa0529270:intron | 35.0% |
| !! | AAAAAAAGGGATAATGGGCT+GGG | + | chr4_1:2724672-2724691 | Msa0529270:intron | 35.0% |
| !!! | CTTTTTTTGGTCAACTGAAC+AGG | - | chr4_1:2724745-2724764 | None:intergenic | 35.0% |
| !! | CTTTTAAGTGTGGAGAATCT+GGG | - | chr4_1:2724878-2724897 | None:intergenic | 35.0% |
| !! | ACTTTTAAGTGTGGAGAATC+TGG | - | chr4_1:2724879-2724898 | None:intergenic | 35.0% |
| !! | GATTCACACACTTTTAAGTG+TGG | - | chr4_1:2724888-2724907 | None:intergenic | 35.0% |
| GACAACAATTGTTCCATAGT+TGG | - | chr4_1:2725200-2725219 | None:intergenic | 35.0% | |
| ! | GAGTATCTTTTTCTCGTATG+TGG | + | chr4_1:2725245-2725264 | Msa0529270:CDS | 35.0% |
| AATCAAATACACAGATGTGG+GGG | - | chr4_1:2725351-2725370 | None:intergenic | 35.0% | |
| GAATCAAATACACAGATGTG+GGG | - | chr4_1:2725352-2725371 | None:intergenic | 35.0% | |
| TTGAACATTTCTTGCGTTTC+TGG | + | chr4_1:2725910-2725929 | Msa0529270:three_prime_UTR | 35.0% | |
| CTTGCAACATATTTGACTGA+TGG | - | chr4_1:2725962-2725981 | None:intergenic | 35.0% | |
| !!! | GGCTTTTTTGTGTTAGGTAA+TGG | + | chr4_1:2726015-2726034 | Msa0529270:three_prime_UTR | 35.0% |
| TTTACGACGATGATACAGCA+CGG | + | chr4_1:2721684-2721703 | Msa0529270:CDS | 40.0% | |
| AACTTAGGAACACCGTCATT+GGG | - | chr4_1:2721861-2721880 | None:intergenic | 40.0% | |
| TAACTTAGGAACACCGTCAT+TGG | - | chr4_1:2721862-2721881 | None:intergenic | 40.0% | |
| CCAATGTCAAGGAGTAACTT+AGG | - | chr4_1:2721876-2721895 | None:intergenic | 40.0% | |
| CCTAAGTTACTCCTTGACAT+TGG | + | chr4_1:2721873-2721892 | Msa0529270:CDS | 40.0% | |
| ! | TTTTTATCGGTCACAGACAC+CGG | + | chr4_1:2721926-2721945 | Msa0529270:intron | 40.0% |
| CATATGTGTGAGTGTCCTAT+CGG | + | chr4_1:2721985-2722004 | Msa0529270:intron | 40.0% | |
| ATGGACATGTGGCAATCATA+AGG | + | chr4_1:2722010-2722029 | Msa0529270:intron | 40.0% | |
| TGGACATGTGGCAATCATAA+GGG | + | chr4_1:2722011-2722030 | Msa0529270:intron | 40.0% | |
| AATCATAAGGGTCGTGATTC+AGG | + | chr4_1:2722023-2722042 | Msa0529270:intron | 40.0% | |
| ATCATAAGGGTCGTGATTCA+GGG | + | chr4_1:2722024-2722043 | Msa0529270:intron | 40.0% | |
| !! | ACTAGCATACCAAGCATTGA+GGG | - | chr4_1:2722178-2722197 | None:intergenic | 40.0% |
| ! | TACTAGCATACCAAGCATTG+AGG | - | chr4_1:2722179-2722198 | None:intergenic | 40.0% |
| TAAGTGCTTGTGAGACTGTT+TGG | - | chr4_1:2722621-2722640 | None:intergenic | 40.0% | |
| !! | CAACATCCCCATTTTGATCT+GGG | + | chr4_1:2723219-2723238 | Msa0529270:intron | 40.0% |
| ! | ACACGTTGATCATCGTTTTC+CGG | - | chr4_1:2723559-2723578 | None:intergenic | 40.0% |
| GTAAATCCAGCTTTCATTGC+AGG | - | chr4_1:2723595-2723614 | None:intergenic | 40.0% | |
| GCAATGAAAGCTGGATTTAC+TGG | + | chr4_1:2723595-2723614 | Msa0529270:CDS | 40.0% | |
| TGGATTTACTGGGGATATAG+TGG | + | chr4_1:2723606-2723625 | Msa0529270:CDS | 40.0% | |
| ATTTACTGGGGATATAGTGG+TGG | + | chr4_1:2723609-2723628 | Msa0529270:CDS | 40.0% | |
| !! | GGGATATAGTGGTGGATTAT+CGG | + | chr4_1:2723617-2723636 | Msa0529270:CDS | 40.0% |
| !! | GGATATAGTGGTGGATTATC+GGG | + | chr4_1:2723618-2723637 | Msa0529270:CDS | 40.0% |
| !! | AAAGAGTGCCTATAAGCCAT+GGG | - | chr4_1:2723802-2723821 | None:intergenic | 40.0% |
| TGCTATTGACAGCATAGATC+GGG | - | chr4_1:2724165-2724184 | None:intergenic | 40.0% | |
| CTGCTATTGACAGCATAGAT+CGG | - | chr4_1:2724166-2724185 | None:intergenic | 40.0% | |
| TTGACAAAGGTAGAGGTTGA+TGG | - | chr4_1:2724400-2724419 | None:intergenic | 40.0% | |
| CAAGAAAACTAGGCTAAGAG+TGG | - | chr4_1:2724437-2724456 | None:intergenic | 40.0% | |
| !! | TCTTAGCCTAGTTTTCTTGC+AGG | + | chr4_1:2724438-2724457 | Msa0529270:intron | 40.0% |
| !! | CTTAGCCTAGTTTTCTTGCA+GGG | + | chr4_1:2724439-2724458 | Msa0529270:intron | 40.0% |
| AAAAGCCCTGCAAGAAAACT+AGG | - | chr4_1:2724447-2724466 | None:intergenic | 40.0% | |
| !! | AGGGCTTTTCTTTAGCTCAA+GGG | + | chr4_1:2724458-2724477 | Msa0529270:intron | 40.0% |
| !! | TCTTTAGCTCAAGGGTTTTC+TGG | + | chr4_1:2724466-2724485 | Msa0529270:intron | 40.0% |
| !! | TTTTCTGGCAGTTGGGTTTT+GGG | + | chr4_1:2724481-2724500 | Msa0529270:intron | 40.0% |
| GTCTGTAAGTGTAGATCAGT+TGG | + | chr4_1:2724811-2724830 | Msa0529270:intron | 40.0% | |
| AGTGTGTGAATCTAACCACT+AGG | + | chr4_1:2724896-2724915 | Msa0529270:intron | 40.0% | |
| TTGTTTGTCAAGTAGCCTAG+TGG | - | chr4_1:2724914-2724933 | None:intergenic | 40.0% | |
| ! | TCGTCTTCAGTTTTACCTTC+GGG | - | chr4_1:2725287-2725306 | None:intergenic | 40.0% |
| ! | GTCGTCTTCAGTTTTACCTT+CGG | - | chr4_1:2725288-2725307 | None:intergenic | 40.0% |
| ATCAAATACACAGATGTGGG+GGG | - | chr4_1:2725350-2725369 | None:intergenic | 40.0% | |
| CCAATTTATGAACAGGTGCT+TGG | - | chr4_1:2725486-2725505 | None:intergenic | 40.0% | |
| CCAAGCACCTGTTCATAAAT+TGG | + | chr4_1:2725483-2725502 | Msa0529270:intron | 40.0% | |
| GGAATGGATAAAGAGGAAGA+AGG | + | chr4_1:2725786-2725805 | Msa0529270:CDS | 40.0% | |
| ! | GCACGAGATGCAATTTTCAA+TGG | - | chr4_1:2725936-2725955 | None:intergenic | 40.0% |
| ! | GTTAGGTAATGGTCATGTAG+CGG | + | chr4_1:2726026-2726045 | Msa0529270:three_prime_UTR | 40.0% |
| ! | GACAGAATACATCTAGCTTG+TGG | + | chr4_1:2726078-2726097 | Msa0529270:three_prime_UTR | 40.0% |
| TCGTCGTAAAATATCTCCGG+TGG | - | chr4_1:2721674-2721693 | None:intergenic | 45.0% | |
| !! | GACCTTTTACTCGGTGACAT+GGG | + | chr4_1:2722320-2722339 | Msa0529270:CDS | 45.0% |
| CTGAATGGCAGATATACCGA+TGG | - | chr4_1:2723039-2723058 | None:intergenic | 45.0% | |
| CATCGGTATATCTGCCATTC+AGG | + | chr4_1:2723037-2723056 | Msa0529270:CDS | 45.0% | |
| CCAGATCAAAATGGGGATGT+TGG | - | chr4_1:2723221-2723240 | None:intergenic | 45.0% | |
| !! | CCAACATCCCCATTTTGATC+TGG | + | chr4_1:2723218-2723237 | Msa0529270:intron | 45.0% |
| TCTTAGATGAGGGTTGTGAG+AGG | - | chr4_1:2723353-2723372 | None:intergenic | 45.0% | |
| TTGAGTCCTGCAATGAAAGC+TGG | + | chr4_1:2723586-2723605 | Msa0529270:CDS | 45.0% | |
| GAGGATTTCCCATGGCTTAT+AGG | + | chr4_1:2723791-2723810 | Msa0529270:intron | 45.0% | |
| !! | CAAAGAGTGCCTATAAGCCA+TGG | - | chr4_1:2723803-2723822 | None:intergenic | 45.0% |
| TATGCTGTCAATAGCAGCTG+TGG | + | chr4_1:2724169-2724188 | Msa0529270:intron | 45.0% | |
| ATGCTGTCAATAGCAGCTGT+GGG | + | chr4_1:2724170-2724189 | Msa0529270:intron | 45.0% | |
| ! | AATTTGTTCTCCTCGTTCCC+TGG | + | chr4_1:2724337-2724356 | Msa0529270:intron | 45.0% |
| !! | ACAAAGGTAGAGGTTGATGG+CGG | - | chr4_1:2724397-2724416 | None:intergenic | 45.0% |
| !! | CAGGGCTTTTCTTTAGCTCA+AGG | + | chr4_1:2724457-2724476 | Msa0529270:intron | 45.0% |
| !! | TCAAGGGTTTTCTGGCAGTT+GGG | + | chr4_1:2724474-2724493 | Msa0529270:intron | 45.0% |
| !! | GTTTTCTGGCAGTTGGGTTT+TGG | + | chr4_1:2724480-2724499 | Msa0529270:intron | 45.0% |
| ACCCTTCTGGTAGCTAATGA+GGG | + | chr4_1:2724604-2724623 | Msa0529270:intron | 45.0% | |
| TCCCTCATTAGCTACCAGAA+GGG | - | chr4_1:2724608-2724627 | None:intergenic | 45.0% | |
| !! | TAGATCAGTTGGTAGCTACC+AGG | + | chr4_1:2724822-2724841 | Msa0529270:intron | 45.0% |
| !! | AGATCAGTTGGTAGCTACCA+GGG | + | chr4_1:2724823-2724842 | Msa0529270:intron | 45.0% |
| TACCAGGGACATCAGTTGTA+GGG | + | chr4_1:2724838-2724857 | Msa0529270:intron | 45.0% | |
| ATGTTGACAGTCTCGGATAG+AGG | - | chr4_1:2725128-2725147 | None:intergenic | 45.0% | |
| ! | TCAGTTTTACCTTCGGGCAA+GGG | - | chr4_1:2725281-2725300 | None:intergenic | 45.0% |
| ! | TTCAGTTTTACCTTCGGGCA+AGG | - | chr4_1:2725282-2725301 | None:intergenic | 45.0% |
| ! | ATGAACAGGTGCTTGGTGAT+GGG | - | chr4_1:2725479-2725498 | None:intergenic | 45.0% |
| ! | TATGAACAGGTGCTTGGTGA+TGG | - | chr4_1:2725480-2725499 | None:intergenic | 45.0% |
| AGAACGAAAAGGGAAGGGAA+TGG | + | chr4_1:2725770-2725789 | Msa0529270:CDS | 45.0% | |
| AGGGAAGGGAATGGATAAAG+AGG | + | chr4_1:2725779-2725798 | Msa0529270:CDS | 45.0% | |
| AAGGAGCAGATGAGAAGAAG+AGG | + | chr4_1:2725805-2725824 | Msa0529270:CDS | 45.0% | |
| CAGATACCAAGTACACTGGT+CGG | + | chr4_1:2725842-2725861 | Msa0529270:CDS | 45.0% | |
| !!! | AAGTAATATATTTTTTATAT+TGG | + | chr4_1:2724101-2724120 | Msa0529270:intron | 5.0% |
| !! | ATTAAATATTAATAAAATAG+TGG | + | chr4_1:2725097-2725116 | Msa0529270:intron | 5.0% |
| TTCAATGACTGAGCGAGCAC+TGG | + | chr4_1:2721821-2721840 | Msa0529270:CDS | 50.0% | |
| CAATGTGTCAGTGTCGTGTC+CGG | - | chr4_1:2721948-2721967 | None:intergenic | 50.0% | |
| TGTGAGTGTCCTATCGGACA+TGG | + | chr4_1:2721991-2722010 | Msa0529270:intron | 50.0% | |
| TCCTATCGGACATGGACATG+TGG | + | chr4_1:2721999-2722018 | Msa0529270:intron | 50.0% | |
| GGTGAGGTAATCACAGAGAG+TGG | + | chr4_1:2722124-2722143 | Msa0529270:CDS | 50.0% | |
| TCACAGAGAGTGGACACCAT+TGG | + | chr4_1:2722134-2722153 | Msa0529270:CDS | 50.0% | |
| CACAGAGAGTGGACACCATT+GGG | + | chr4_1:2722135-2722154 | Msa0529270:CDS | 50.0% | |
| CAATGTCGAGACCAACCCAA+TGG | - | chr4_1:2722153-2722172 | None:intergenic | 50.0% | |
| GACATTGCACCCTCAATGCT+TGG | + | chr4_1:2722166-2722185 | Msa0529270:CDS | 50.0% | |
| AGATATCGCATTGGAGCGTG+AGG | + | chr4_1:2722289-2722308 | Msa0529270:intron | 50.0% | |
| ! | GTTGAGGGCGACCTTTTACT+CGG | + | chr4_1:2722311-2722330 | Msa0529270:CDS | 50.0% |
| !! | CGACCTTTTACTCGGTGACA+TGG | + | chr4_1:2722319-2722338 | Msa0529270:CDS | 50.0% |
| GACCCATGTCACCGAGTAAA+AGG | - | chr4_1:2722325-2722344 | None:intergenic | 50.0% | |
| ! | TTTACTCGGTGACATGGGTC+AGG | + | chr4_1:2722325-2722344 | Msa0529270:CDS | 50.0% |
| !! | CAGGGTTTAGGGCTTCGTTT+TGG | + | chr4_1:2722999-2723018 | Msa0529270:intron | 50.0% |
| GGAATGTTTGATGGGGCCAT+CGG | + | chr4_1:2723020-2723039 | Msa0529270:CDS | 50.0% | |
| !! | TAGTGGTGGATTATCGGGAC+AGG | + | chr4_1:2723623-2723642 | Msa0529270:CDS | 50.0% |
| TTTGGGCTTAGGGCCTAACT+CGG | + | chr4_1:2723768-2723787 | Msa0529270:intron | 50.0% | |
| ATGGGAAATCCTCCCGAGTT+AGG | - | chr4_1:2723784-2723803 | None:intergenic | 50.0% | |
| TAACTCGGGAGGATTTCCCA+TGG | + | chr4_1:2723783-2723802 | Msa0529270:intron | 50.0% | |
| GTTGAAACTCTCTTCTGCGC+AGG | - | chr4_1:2724267-2724286 | None:intergenic | 50.0% | |
| ACGGAGGTTGACAAAGGTAG+AGG | - | chr4_1:2724407-2724426 | None:intergenic | 50.0% | |
| ACTAGGCTAAGAGTGGGTCT+GGG | - | chr4_1:2724430-2724449 | None:intergenic | 50.0% | |
| AACTAGGCTAAGAGTGGGTC+TGG | - | chr4_1:2724431-2724450 | None:intergenic | 50.0% | |
| !! | CTCAAGGGTTTTCTGGCAGT+TGG | + | chr4_1:2724473-2724492 | Msa0529270:intron | 50.0% |
| TCCACCCCTTGTATTCTCTG+AGG | + | chr4_1:2724556-2724575 | Msa0529270:intron | 50.0% | |
| CCACCCCTTGTATTCTCTGA+GGG | + | chr4_1:2724557-2724576 | Msa0529270:intron | 50.0% | |
| !! | CTTCCGGTGCTGTATATGAG+GGG | - | chr4_1:2724583-2724602 | None:intergenic | 50.0% |
| !! | CCTTCCGGTGCTGTATATGA+GGG | - | chr4_1:2724584-2724603 | None:intergenic | 50.0% |
| !! | TCCTTCCGGTGCTGTATATG+AGG | - | chr4_1:2724585-2724604 | None:intergenic | 50.0% |
| GACCCTTCTGGTAGCTAATG+AGG | + | chr4_1:2724603-2724622 | Msa0529270:intron | 50.0% | |
| GTCCCTCATTAGCTACCAGA+AGG | - | chr4_1:2724609-2724628 | None:intergenic | 50.0% | |
| CTACCAGGGACATCAGTTGT+AGG | + | chr4_1:2724837-2724856 | Msa0529270:intron | 50.0% | |
| ACCAGGGACATCAGTTGTAG+GGG | + | chr4_1:2724839-2724858 | Msa0529270:intron | 50.0% | |
| ! | GACTTTGGTCACAAAGCACC+TGG | + | chr4_1:2725434-2725453 | Msa0529270:intron | 50.0% |
| CCAGTGTACTTGGTATCTGG+AGG | - | chr4_1:2725841-2725860 | None:intergenic | 50.0% | |
| CCTCCAGATACCAAGTACAC+TGG | + | chr4_1:2725838-2725857 | Msa0529270:CDS | 50.0% | |
| CGACCAGTGTACTTGGTATC+TGG | - | chr4_1:2725844-2725863 | None:intergenic | 50.0% | |
| CCAAGTACACTGGTCGGAAA+CGG | + | chr4_1:2725848-2725867 | Msa0529270:CDS | 50.0% | |
| GCCACATGTCCATGTCCGAT+AGG | - | chr4_1:2722003-2722022 | None:intergenic | 55.0% | |
| GGTTGTGGATCGGGACTTAG+CGG | + | chr4_1:2722103-2722122 | Msa0529270:intron | 55.0% | |
| GAGAGTGGACACCATTGGGT+TGG | + | chr4_1:2722139-2722158 | Msa0529270:CDS | 55.0% | |
| GCATTGGAGCGTGAGGTTGA+GGG | + | chr4_1:2722296-2722315 | Msa0529270:CDS | 55.0% | |
| TTGGGCTTAGGGCCTAACTC+GGG | + | chr4_1:2723769-2723788 | Msa0529270:intron | 55.0% | |
| AATAGCAGCTGTGGGCGATG+TGG | + | chr4_1:2724178-2724197 | Msa0529270:intron | 55.0% | |
| !! | TGGCTAGTCTCTGCCACACA+CGG | + | chr4_1:2724206-2724225 | Msa0529270:intron | 55.0% |
| !! | GAAGAGCATTGCGCTGCTAC+AGG | + | chr4_1:2724309-2724328 | Msa0529270:intron | 55.0% |
| ! | TCTGGGACGGAGGTTGACAA+AGG | - | chr4_1:2724413-2724432 | None:intergenic | 55.0% |
| CCCTCAGAGAATACAAGGGG+TGG | - | chr4_1:2724560-2724579 | None:intergenic | 55.0% | |
| GGGCCCTCAGAGAATACAAG+GGG | - | chr4_1:2724563-2724582 | None:intergenic | 55.0% | |
| GGGGCCCTCAGAGAATACAA+GGG | - | chr4_1:2724564-2724583 | None:intergenic | 55.0% | |
| AGGGGCCCTCAGAGAATACA+AGG | - | chr4_1:2724565-2724584 | None:intergenic | 55.0% | |
| ! | CCCTCATATACAGCACCGGA+AGG | + | chr4_1:2724581-2724600 | Msa0529270:intron | 55.0% |
| AGCTACCAGAAGGGTCCTTC+CGG | - | chr4_1:2724599-2724618 | None:intergenic | 55.0% | |
| !! | AAGGGATAATGGGCTGGGTC+TGG | + | chr4_1:2724677-2724696 | Msa0529270:intron | 55.0% |
| GACAGTCTCGGATAGAGGAG+TGG | - | chr4_1:2725123-2725142 | None:intergenic | 55.0% | |
| !! | CAAGAAGTACCCTTGCCCGA+AGG | + | chr4_1:2725269-2725288 | Msa0529270:CDS | 55.0% |
| CCGTTTCCGACCAGTGTACT+TGG | - | chr4_1:2725851-2725870 | None:intergenic | 55.0% | |
| TGGATCGGGACTTAGCGGTG+AGG | + | chr4_1:2722108-2722127 | Msa0529270:CDS | 60.0% | |
| CGCATTGGAGCGTGAGGTTG+AGG | + | chr4_1:2722295-2722314 | Msa0529270:CDS | 60.0% | |
| CTGTGGGCGATGTGGAACAG+TGG | + | chr4_1:2724186-2724205 | Msa0529270:intron | 60.0% | |
| CTAGTCTCTGCCACACACGG+CGG | + | chr4_1:2724209-2724228 | Msa0529270:intron | 60.0% | |
| !! | AGGTAGAGGTTGATGGCGGC+TGG | - | chr4_1:2724393-2724412 | None:intergenic | 60.0% |
| ! | TAAGAGTGGGTCTGGGACGG+AGG | - | chr4_1:2724423-2724442 | None:intergenic | 60.0% |
| GGCTAAGAGTGGGTCTGGGA+CGG | - | chr4_1:2724426-2724445 | None:intergenic | 60.0% | |
| GGGCCCCTCATATACAGCAC+CGG | + | chr4_1:2724577-2724596 | Msa0529270:intron | 60.0% | |
| GCCCCTACAACTGATGTCCC+TGG | - | chr4_1:2724843-2724862 | None:intergenic | 60.0% | |
| GAAGACGACGACGACGACAG+TGG | + | chr4_1:2725299-2725318 | Msa0529270:CDS | 60.0% | |
| ACCAGAGGCGGTTGCTCCAC+CGG | + | chr4_1:2721655-2721674 | Msa0529270:CDS | 65.0% | |
| GGCTTAGGGCCTAACTCGGG+AGG | + | chr4_1:2723772-2723791 | Msa0529270:intron | 65.0% | |
| TGCCACACACGGCGGAACAG+TGG | + | chr4_1:2724217-2724236 | Msa0529270:intron | 65.0% | |
| AGCCACTGTTCCGCCGTGTG+TGG | - | chr4_1:2724222-2724241 | None:intergenic | 65.0% | |
| CCTCGTTCCCTGGTTGCCAC+CGG | + | chr4_1:2724347-2724366 | Msa0529270:intron | 65.0% | |
| TGGAACGCCGGTGGCAACCA+GGG | - | chr4_1:2724357-2724376 | None:intergenic | 65.0% | |
| ATGGAACGCCGGTGGCAACC+AGG | - | chr4_1:2724358-2724377 | None:intergenic | 65.0% | |
| GATGGCAGGGGATGGAACGC+CGG | - | chr4_1:2724369-2724388 | None:intergenic | 65.0% | |
| !! | AGGTTGATGGCGGCTGGCGA+TGG | - | chr4_1:2724387-2724406 | None:intergenic | 65.0% |
| ! | CAGCACCGGAAGGACCCTTC+TGG | + | chr4_1:2724591-2724610 | Msa0529270:intron | 65.0% |
| TCCGGTGGAGCAACCGCCTC+TGG | - | chr4_1:2721659-2721678 | None:intergenic | 70.0% | |
| CCGGTGGCAACCAGGGAACG+AGG | - | chr4_1:2724350-2724369 | None:intergenic | 70.0% | |
| ATGGCGGCTGGCGATGGCAG+GGG | - | chr4_1:2724381-2724400 | None:intergenic | 70.0% | |
| ! | GATGGCGGCTGGCGATGGCA+GGG | - | chr4_1:2724382-2724401 | None:intergenic | 70.0% |
| !! | TGATGGCGGCTGGCGATGGC+AGG | - | chr4_1:2724383-2724402 | None:intergenic | 70.0% |
| GGCAGGGGATGGAACGCCGG+TGG | - | chr4_1:2724366-2724385 | None:intergenic | 75.0% | |
| CGGCTGGCGATGGCAGGGGA+TGG | - | chr4_1:2724377-2724396 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 2721644 | 2726164 | 2721644 | ID=Msa0529270;Name=Msa0529270 |
| chr4_1 | mRNA | 2721644 | 2726164 | 2721644 | ID=Msa0529270-mRNA-1;Parent=Msa0529270;Name=Msa0529270-mRNA-1;_AED=0.58;_eAED=0.58;_QI=0|0.12|0.11|0.22|1|1|9|279|283 |
| chr4_1 | exon | 2721644 | 2721742 | 2721644 | ID=Msa0529270-mRNA-1:exon:767;Parent=Msa0529270-mRNA-1 |
| chr4_1 | exon | 2721819 | 2721894 | 2721819 | ID=Msa0529270-mRNA-1:exon:768;Parent=Msa0529270-mRNA-1 |
| chr4_1 | exon | 2722104 | 2722187 | 2722104 | ID=Msa0529270-mRNA-1:exon:769;Parent=Msa0529270-mRNA-1 |
| chr4_1 | exon | 2722291 | 2722346 | 2722291 | ID=Msa0529270-mRNA-1:exon:770;Parent=Msa0529270-mRNA-1 |
| chr4_1 | exon | 2723002 | 2723058 | 2723002 | ID=Msa0529270-mRNA-1:exon:771;Parent=Msa0529270-mRNA-1 |
| chr4_1 | exon | 2723328 | 2723377 | 2723328 | ID=Msa0529270-mRNA-1:exon:772;Parent=Msa0529270-mRNA-1 |
| chr4_1 | exon | 2723492 | 2723644 | 2723492 | ID=Msa0529270-mRNA-1:exon:773;Parent=Msa0529270-mRNA-1 |
| chr4_1 | exon | 2725229 | 2725340 | 2725229 | ID=Msa0529270-mRNA-1:exon:774;Parent=Msa0529270-mRNA-1 |
| chr4_1 | exon | 2725721 | 2726164 | 2725721 | ID=Msa0529270-mRNA-1:exon:775;Parent=Msa0529270-mRNA-1 |
| chr4_1 | CDS | 2721644 | 2721742 | 2721644 | ID=Msa0529270-mRNA-1:cds;Parent=Msa0529270-mRNA-1 |
| chr4_1 | CDS | 2721819 | 2721894 | 2721819 | ID=Msa0529270-mRNA-1:cds;Parent=Msa0529270-mRNA-1 |
| chr4_1 | CDS | 2722104 | 2722187 | 2722104 | ID=Msa0529270-mRNA-1:cds;Parent=Msa0529270-mRNA-1 |
| chr4_1 | CDS | 2722291 | 2722346 | 2722291 | ID=Msa0529270-mRNA-1:cds;Parent=Msa0529270-mRNA-1 |
| chr4_1 | CDS | 2723002 | 2723058 | 2723002 | ID=Msa0529270-mRNA-1:cds;Parent=Msa0529270-mRNA-1 |
| chr4_1 | CDS | 2723328 | 2723377 | 2723328 | ID=Msa0529270-mRNA-1:cds;Parent=Msa0529270-mRNA-1 |
| chr4_1 | CDS | 2723492 | 2723644 | 2723492 | ID=Msa0529270-mRNA-1:cds;Parent=Msa0529270-mRNA-1 |
| chr4_1 | CDS | 2725229 | 2725340 | 2725229 | ID=Msa0529270-mRNA-1:cds;Parent=Msa0529270-mRNA-1 |
| chr4_1 | CDS | 2725721 | 2725885 | 2725721 | ID=Msa0529270-mRNA-1:cds;Parent=Msa0529270-mRNA-1 |
| chr4_1 | three_prime_UTR | 2725886 | 2726164 | 2725886 | ID=Msa0529270-mRNA-1:three_prime_utr;Parent=Msa0529270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
