Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585660 | XP_003604281.1 | 71.304 | 345 | 38 | 5 | 1 | 345 | 1 | 284 | 6.24e-162 | 464 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585660 | sp|Q9LVD0|RID2_ARATH | 68.246 | 211 | 63 | 1 | 1 | 207 | 1 | 211 | 7.35e-102 | 304 |
| Msa0585660 | sp|Q9LVD0|RID2_ARATH | 56.061 | 66 | 29 | 0 | 280 | 345 | 224 | 289 | 4.71e-16 | 80.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0529270 | Msa0585660 | 0.855275 | 7.038628e-62 | -8.615850e-47 |
| Msa0585630 | Msa0585660 | 0.911887 | 3.654676e-83 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585660 | MtrunA17_Chr4g0001521 | 71.304 | 345 | 38 | 5 | 1 | 345 | 1 | 284 | 5.74e-166 | 464 |
| Msa0585660 | MtrunA17_Chr4g0072031 | 76.382 | 199 | 43 | 1 | 1 | 195 | 1 | 199 | 3.50e-109 | 320 |
| Msa0585660 | MtrunA17_Chr4g0072031 | 57.471 | 87 | 32 | 2 | 264 | 345 | 205 | 291 | 1.47e-19 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585660 | AT5G57280.1 | 68.246 | 211 | 63 | 1 | 1 | 207 | 1 | 211 | 7.47e-103 | 304 |
| Msa0585660 | AT5G57280.1 | 56.061 | 66 | 29 | 0 | 280 | 345 | 224 | 289 | 4.79e-17 | 80.9 |
Find 107 sgRNAs with CRISPR-Local
Find 313 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAACATTTCTTGCGTTTC+TGG | 0.060479 | 4_2:-6698196 | Msa0585660:three_prime_UTR |
| TATCTTTGATTTCAGGGTTT+AGG | 0.182180 | 4_2:-6701101 | Msa0585660:intron |
| ATCTTTGATTTCAGGGTTTA+GGG | 0.182277 | 4_2:-6701100 | Msa0585660:intron |
| AATTTAATTGTTACATTTCA+TGG | 0.202021 | 4_2:-6698112 | Msa0585660:three_prime_UTR |
| TTCCCGTAACATTGAAATTC+AGG | 0.224195 | 4_2:-6702390 | Msa0585660:intron |
| GTTTGTATACTAATATTCTA+TGG | 0.282409 | 4_2:-6698050 | Msa0585660:three_prime_UTR |
| ATTTGTCAAGCATTTGTATA+AGG | 0.304310 | 4_2:+6700582 | None:intergenic |
| CATCGGTATATCTGCCATTC+AGG | 0.313191 | 4_2:-6701051 | Msa0585660:intron |
| GCAAGAAATGTTCAACATTA+AGG | 0.324321 | 4_2:+6698204 | None:intergenic |
| CGACCAGTGTACTTGGTATC+TGG | 0.329329 | 4_2:+6698265 | None:intergenic |
| GTAAATCCAGCTTTCATTGC+AGG | 0.331794 | 4_2:+6700496 | None:intergenic |
| GCAATGAAAGCTGGATTTAC+CGG | 0.334439 | 4_2:-6700493 | Msa0585660:CDS |
| TGATGGCGGCTGGCGATGGC+AGG | 0.339670 | 4_2:+6699722 | None:intergenic |
| TTCAATGTTACGGGAATTAG+AGG | 0.341768 | 4_2:+6702397 | None:intergenic |
| CCGTTTCCGACCAGTGTACT+TGG | 0.346432 | 4_2:+6698258 | None:intergenic |
| GACCCATGTCACCGAGTAAA+AGG | 0.358459 | 4_2:+6701770 | None:intergenic |
| GGGATATAGTGGTGGATTAT+CGG | 0.359648 | 4_2:-6700471 | Msa0585660:CDS |
| AAACCTGAATTTCAATGTTA+CGG | 0.373267 | 4_2:+6702387 | None:intergenic |
| CAGGGTTTAGGGCTTCGTTT+TGG | 0.382986 | 4_2:-6701089 | Msa0585660:CDS |
| AACCTGAATTTCAATGTTAC+GGG | 0.383633 | 4_2:+6702388 | None:intergenic |
| AACTAGGCTAAGAGTGGGTC+TGG | 0.384370 | 4_2:+6699674 | None:intergenic |
| CGCATTGGAGCGTGAGGTTG+AGG | 0.393884 | 4_2:-6701797 | Msa0585660:CDS |
| GGATATAGTGGTGGATTATC+GGG | 0.394115 | 4_2:-6700470 | Msa0585660:CDS |
| AATTTGTTCTCCTCGTTCCC+TGG | 0.421223 | 4_2:-6699765 | Msa0585660:CDS |
| ATGGCGGCTGGCGATGGCAG+GGG | 0.423688 | 4_2:+6699724 | None:intergenic |
| TAACTTAGGAACACCGTCAT+TGG | 0.426115 | 4_2:+6702248 | None:intergenic |
| TTATATTTCTGTTTCTTCCA+AGG | 0.434075 | 4_2:+6698361 | None:intergenic |
| TCCGGTGGAGCTACCGCCTC+TGG | 0.440839 | 4_2:+6702455 | None:intergenic |
| AGGGAAGGGAATGGATAAAG+AGG | 0.451166 | 4_2:-6698327 | Msa0585660:CDS |
| ATGGAACGCCGGTGGCAACC+AGG | 0.452065 | 4_2:+6699747 | None:intergenic |
| AGGTTGATGGCGGCTGGCGA+TGG | 0.456303 | 4_2:+6699718 | None:intergenic |
| GATGGCGGCTGGCGATGGCA+GGG | 0.456712 | 4_2:+6699723 | None:intergenic |
| GAAATATAATAAGAACGAAA+AGG | 0.457776 | 4_2:-6698347 | Msa0585660:CDS |
| TTTAAGTTATTTAATTGTAT+CGG | 0.459049 | 4_2:-6698004 | Msa0585660:three_prime_UTR |
| CGGCTGGCGATGGCAGGGGA+TGG | 0.460944 | 4_2:+6699728 | None:intergenic |
| AGCAGTATTTCAAGTGTATC+CGG | 0.461795 | 4_2:-6700551 | Msa0585660:CDS |
| TTCAATGACTGAGCGAGCAC+TGG | 0.469446 | 4_2:-6702286 | Msa0585660:CDS |
| CACAGAGAGTGGACACCATT+GGG | 0.471845 | 4_2:-6701952 | Msa0585660:CDS |
| TGGATTTACCGGGGATATAG+TGG | 0.472614 | 4_2:-6700482 | Msa0585660:CDS |
| GAAGAGCATTGCGCTGCTAC+AGG | 0.473139 | 4_2:-6699793 | Msa0585660:CDS |
| TTGACAAAGGTAGAGGTTGA+TGG | 0.483960 | 4_2:+6699705 | None:intergenic |
| TTTACTCGGTGACATGGGTC+AGG | 0.486959 | 4_2:-6701767 | Msa0585660:intron |
| AAGGAGCAGATGAGAAGAAG+AGG | 0.488596 | 4_2:-6698301 | Msa0585660:CDS |
| AAAAGCCCTGCAAGAAAACT+AGG | 0.489871 | 4_2:+6699658 | None:intergenic |
| TTATACAAATGCTTGACAAA+TGG | 0.490254 | 4_2:-6700580 | Msa0585660:CDS |
| CTTGCAACATATTTGACTGA+TGG | 0.493604 | 4_2:+6698147 | None:intergenic |
| ACCAGAGGCGGTAGCTCCAC+CGG | 0.499290 | 4_2:-6702456 | Msa0585660:CDS |
| GACATTGCACCCTCAATGCT+TGG | 0.507243 | 4_2:-6701921 | Msa0585660:intron |
| CAATGAAAGCTGGATTTACC+GGG | 0.507942 | 4_2:-6700492 | Msa0585660:CDS |
| AAATATAATAAGAACGAAAA+GGG | 0.511948 | 4_2:-6698346 | Msa0585660:CDS |
| AACTTAGGAACACCGTCATT+GGG | 0.512998 | 4_2:+6702249 | None:intergenic |
| AGGTAGAGGTTGATGGCGGC+TGG | 0.518582 | 4_2:+6699712 | None:intergenic |
| TTGAGTCCTGCAATGAAAGC+TGG | 0.520754 | 4_2:-6700502 | Msa0585660:CDS |
| CCAAGTACACTGGTCGGAAA+CGG | 0.520993 | 4_2:-6698258 | Msa0585660:CDS |
| CCAATGTCAAGGAGTAACTT+AGG | 0.523073 | 4_2:+6702234 | None:intergenic |
| GATGGCAGGGGATGGAACGC+CGG | 0.523546 | 4_2:+6699736 | None:intergenic |
| CCTCGTTCCCTGGTTGCCAC+CGG | 0.525134 | 4_2:-6699755 | Msa0585660:CDS |
| TCACAGAGAGTGGACACCAT+TGG | 0.529338 | 4_2:-6701953 | Msa0585660:CDS |
| GCATTGGAGCGTGAGGTTGA+GGG | 0.531379 | 4_2:-6701796 | Msa0585660:CDS |
| TAAGAGTGGGTCTGGGACGG+AGG | 0.532260 | 4_2:+6699682 | None:intergenic |
| AGAACGAAAAGGGAAGGGAA+TGG | 0.533720 | 4_2:-6698336 | Msa0585660:CDS |
| ACTAGCATACCAAGCATTGA+GGG | 0.538511 | 4_2:+6701912 | None:intergenic |
| TTAACTTGTAGATATCGCAT+TGG | 0.541703 | 4_2:-6701812 | Msa0585660:intron |
| TTATCTAAAGCAAACCTGAA+TGG | 0.544627 | 4_2:+6701037 | None:intergenic |
| GGAATGTTTGATGGGGCCAT+CGG | 0.547297 | 4_2:-6701068 | Msa0585660:CDS |
| ATAATAAGAACGAAAAGGGA+AGG | 0.547716 | 4_2:-6698342 | Msa0585660:CDS |
| TACTAGCATACCAAGCATTG+AGG | 0.548542 | 4_2:+6701911 | None:intergenic |
| CCTAAGTTACTCCTTGACAT+TGG | 0.548757 | 4_2:-6702234 | Msa0585660:intron |
| TGGAACGCCGGTGGCAACCA+GGG | 0.549655 | 4_2:+6699748 | None:intergenic |
| GGCTAAGAGTGGGTCTGGGA+CGG | 0.558026 | 4_2:+6699679 | None:intergenic |
| GGTTGTGGATCGGGACTTAG+CGG | 0.566307 | 4_2:-6701984 | Msa0585660:CDS |
| GCATACTTCAATCTTAGATG+AGG | 0.569225 | 4_2:+6700727 | None:intergenic |
| TAGTGGTGGATTATCGGGAC+AGG | 0.569371 | 4_2:-6700465 | Msa0585660:intron |
| TCATCGTCGTAAAATATCTC+CGG | 0.571583 | 4_2:+6702437 | None:intergenic |
| CATACTTCAATCTTAGATGA+GGG | 0.573227 | 4_2:+6700728 | None:intergenic |
| CAAGAAAACTAGGCTAAGAG+TGG | 0.579391 | 4_2:+6699668 | None:intergenic |
| ACGGAGGTTGACAAAGGTAG+AGG | 0.580410 | 4_2:+6699698 | None:intergenic |
| GGCAGGGGATGGAACGCCGG+TGG | 0.586208 | 4_2:+6699739 | None:intergenic |
| ACTAGGCTAAGAGTGGGTCT+GGG | 0.588748 | 4_2:+6699675 | None:intergenic |
| GACAGAATACATCTAGCTTG+TGG | 0.593682 | 4_2:-6698028 | Msa0585660:three_prime_UTR |
| GAAATAACATACCAATGTCA+AGG | 0.594135 | 4_2:+6702223 | None:intergenic |
| TAATAAGAACGAAAAGGGAA+GGG | 0.599558 | 4_2:-6698341 | Msa0585660:CDS |
| CTTCTCAATTTACCCAATGA+CGG | 0.600645 | 4_2:-6702261 | Msa0585660:CDS |
| ATAATCCACCACTATATCCC+CGG | 0.601215 | 4_2:+6700474 | None:intergenic |
| CCGGTGGCAACCAGGGAACG+AGG | 0.606424 | 4_2:+6699755 | None:intergenic |
| GGAATGGATAAAGAGGAAGA+AGG | 0.613907 | 4_2:-6698320 | Msa0585660:CDS |
| CAGATACCAAGTACACTGGT+CGG | 0.615749 | 4_2:-6698264 | Msa0585660:CDS |
| TCGTCGTAAAATATCTCCGG+TGG | 0.621804 | 4_2:+6702440 | None:intergenic |
| GTTAGGTAATGGTCATGTAG+CGG | 0.624903 | 4_2:-6698080 | Msa0585660:three_prime_UTR |
| GAGAGTGGACACCATTGGGT+TGG | 0.626926 | 4_2:-6701948 | Msa0585660:CDS |
| CAATGTCGAGACCAACCCAA+TGG | 0.632121 | 4_2:+6701937 | None:intergenic |
| TCTGGGACGGAGGTTGACAA+AGG | 0.644851 | 4_2:+6699692 | None:intergenic |
| AGATATCGCATTGGAGCGTG+AGG | 0.647913 | 4_2:-6701803 | Msa0585660:CDS |
| GATGGGTTCAAGACCAGAGG+CGG | 0.648096 | 4_2:-6702468 | Msa0585660:CDS |
| ATTTACCGGGGATATAGTGG+TGG | 0.648138 | 4_2:-6700479 | Msa0585660:CDS |
| TCTTAGATGAGGGTTGTGAG+AGG | 0.653129 | 4_2:+6700738 | None:intergenic |
| CAAGAAGTACCCTTGCCCGA+AGG | 0.653794 | 4_2:-6698838 | Msa0585660:intron |
| CGGGATGGGTTCAAGACCAG+AGG | 0.654002 | 4_2:-6702471 | None:intergenic |
| CCTCCAGATACCAAGTACAC+TGG | 0.661149 | 4_2:-6698268 | Msa0585660:CDS |
| CCAGTGTACTTGGTATCTGG+AGG | 0.664844 | 4_2:+6698268 | None:intergenic |
| CTGAATGGCAGATATACCGA+TGG | 0.676516 | 4_2:+6701052 | None:intergenic |
| AAGAAAACTAGGCTAAGAGT+GGG | 0.676691 | 4_2:+6699669 | None:intergenic |
| GGTGAGGTAATCACAGAGAG+TGG | 0.681616 | 4_2:-6701963 | Msa0585660:CDS |
| TTTACGACGATGATACAGGA+CGG | 0.708526 | 4_2:-6702427 | Msa0585660:CDS |
| ACAAAGGTAGAGGTTGATGG+CGG | 0.719446 | 4_2:+6699708 | None:intergenic |
| TGGATCGGGACTTAGCGGTG+AGG | 0.729748 | 4_2:-6701979 | Msa0585660:CDS |
| AATGAAAGCTGGATTTACCG+GGG | 0.731549 | 4_2:-6700491 | Msa0585660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAGAATAATTTTACTATT+TGG | - | chr4_2:6700079-6700098 | Msa0585660:intron | 10.0% |
| !!! | AAAGAATAATTTTACTATTT+GGG | - | chr4_2:6700080-6700099 | Msa0585660:intron | 10.0% |
| !!! | TTTAAGTTATTTAATTGTAT+CGG | - | chr4_2:6702427-6702446 | Msa0585660:CDS | 10.0% |
| !!! | ATAACTTTAAAAAAAATCAT+CGG | - | chr4_2:6702465-6702484 | Msa0585660:CDS | 10.0% |
| !! | TCGATAAACAAAAAAAAAAA+AGG | + | chr4_2:6698097-6698116 | None:intergenic | 15.0% |
| !! | TTATATTAGTGTTTATGTAT+AGG | - | chr4_2:6698785-6698804 | Msa0585660:intron | 15.0% |
| !! | TAATAGAAATAAGCTAAATT+TGG | - | chr4_2:6698891-6698910 | Msa0585660:intron | 15.0% |
| !! | ACTAATGTTTATCAATAAAA+TGG | + | chr4_2:6699068-6699087 | None:intergenic | 15.0% |
| !!! | TAGCATATTATTTTTATCAA+GGG | + | chr4_2:6699116-6699135 | None:intergenic | 15.0% |
| !! | AAATATAGTAGTTTAAATGA+AGG | - | chr4_2:6699197-6699216 | Msa0585660:intron | 15.0% |
| !! | AAATGAAGGATAAATATAAT+TGG | - | chr4_2:6699211-6699230 | Msa0585660:intron | 15.0% |
| !! | TATAACCTAAATATATAAAG+GGG | + | chr4_2:6699264-6699283 | None:intergenic | 15.0% |
| !! | CTATAACCTAAATATATAAA+GGG | + | chr4_2:6699265-6699284 | None:intergenic | 15.0% |
| !! | TCTATAACCTAAATATATAA+AGG | + | chr4_2:6699266-6699285 | None:intergenic | 15.0% |
| !! | AGTCAAAAAAAAAAAAATCA+GGG | + | chr4_2:6699640-6699659 | None:intergenic | 15.0% |
| !! | AAGTCAAAAAAAAAAAAATC+AGG | + | chr4_2:6699641-6699660 | None:intergenic | 15.0% |
| !!! | AAAAAAAAGTATGATAGATA+AGG | + | chr4_2:6699736-6699755 | None:intergenic | 15.0% |
| !! | CAAATTAAGAAATGTAATAA+CGG | - | chr4_2:6700283-6700302 | Msa0585660:intron | 15.0% |
| !!! | ATATTTTTTATATTGGTGTA+AGG | - | chr4_2:6700437-6700456 | Msa0585660:intron | 15.0% |
| !!! | TATTTTTTATATTGGTGTAA+GGG | - | chr4_2:6700438-6700457 | Msa0585660:intron | 15.0% |
| !! | AAATATAATAAGAACGAAAA+GGG | - | chr4_2:6702085-6702104 | Msa0585660:intron | 15.0% |
| !! | AATTTAATTGTTACATTTCA+TGG | - | chr4_2:6702319-6702338 | Msa0585660:intron | 15.0% |
| !!! | TAACTTTAAAAAAAATCATC+GGG | - | chr4_2:6702466-6702485 | Msa0585660:CDS | 15.0% |
| !!! | TATGAATGTTTGTTTTGTTT+AGG | - | chr4_2:6698426-6698445 | Msa0585660:intron | 20.0% |
| !! | GTTTATCAATAAAATGGAAA+AGG | + | chr4_2:6699062-6699081 | None:intergenic | 20.0% |
| !!! | ATATTATTTTTATCAAGGGA+TGG | + | chr4_2:6699112-6699131 | None:intergenic | 20.0% |
| !!! | GTAGCATATTATTTTTATCA+AGG | + | chr4_2:6699117-6699136 | None:intergenic | 20.0% |
| !! | GTATTTGATAAAGTAAACAA+TGG | - | chr4_2:6699165-6699184 | Msa0585660:intron | 20.0% |
| !! | AATATCCCCTTTATATATTT+AGG | - | chr4_2:6699256-6699275 | Msa0585660:intron | 20.0% |
| !! | AAACTACAAAAATTAATGCA+TGG | - | chr4_2:6699428-6699447 | Msa0585660:intron | 20.0% |
| !! | TTAATTGAGTTTCATTTCAT+CGG | + | chr4_2:6699485-6699504 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTGTTCCTTTGTA+GGG | - | chr4_2:6699814-6699833 | Msa0585660:CDS | 20.0% |
| !! | ACTATATAGTATTAGAAAAC+AGG | - | chr4_2:6700350-6700369 | Msa0585660:intron | 20.0% |
| !! | CTATATAGTATTAGAAAACA+GGG | - | chr4_2:6700351-6700370 | Msa0585660:intron | 20.0% |
| !! | TAAAGATAGTTGTAAAGAAT+AGG | + | chr4_2:6701040-6701059 | None:intergenic | 20.0% |
| !!! | ACAACTATCTTTAATTTAAG+TGG | - | chr4_2:6701047-6701066 | Msa0585660:intron | 20.0% |
| !!! | TTAAAAGGTGTTACTTTTTT+TGG | + | chr4_2:6701087-6701106 | None:intergenic | 20.0% |
| !! | AACACAAAACTTTATAAAAG+GGG | + | chr4_2:6701116-6701135 | None:intergenic | 20.0% |
| !! | CAACACAAAACTTTATAAAA+GGG | + | chr4_2:6701117-6701136 | None:intergenic | 20.0% |
| !! | ACAACACAAAACTTTATAAA+AGG | + | chr4_2:6701118-6701137 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTTTCACTAACTA+TGG | - | chr4_2:6701517-6701536 | Msa0585660:intron | 20.0% |
| !! | GAAATATAATAAGAACGAAA+AGG | - | chr4_2:6702084-6702103 | Msa0585660:intron | 20.0% |
| !! | GTTTGTATACTAATATTCTA+TGG | - | chr4_2:6702381-6702400 | Msa0585660:intron | 20.0% |
| ! | AAACCTGAATTTCAATGTTA+CGG | + | chr4_2:6698047-6698066 | None:intergenic | 25.0% |
| ! | TAAGAAGAATAAGAAGAAGA+GGG | + | chr4_2:6698071-6698090 | None:intergenic | 25.0% |
| ! | TTAAGAAGAATAAGAAGAAG+AGG | + | chr4_2:6698072-6698091 | None:intergenic | 25.0% |
| !!! | GTTAGCTTACTTGTTTTTAT+AGG | - | chr4_2:6698237-6698256 | Msa0585660:exon | 25.0% |
| !!! | CTTATTTCTATTAGTTCTCA+AGG | + | chr4_2:6698884-6698903 | None:intergenic | 25.0% |
| !! | TTGTTGTTATGCTCTAATAA+AGG | - | chr4_2:6699026-6699045 | Msa0585660:intron | 25.0% |
| !! | ATAAAGGGGATATTAAGTTT+TGG | + | chr4_2:6699250-6699269 | None:intergenic | 25.0% |
| !! | ACTACTTTATCTTTGATTTC+AGG | - | chr4_2:6699323-6699342 | Msa0585660:intron | 25.0% |
| !! | CTACTTTATCTTTGATTTCA+GGG | - | chr4_2:6699324-6699343 | Msa0585660:intron | 25.0% |
| ! | TGAGTATATTCTTCTTAACA+CGG | + | chr4_2:6699457-6699476 | None:intergenic | 25.0% |
| !!! | CTTTTTTTTTGTTCCTTTGT+AGG | - | chr4_2:6699813-6699832 | Msa0585660:CDS | 25.0% |
| ! | ATTTGTCAAGCATTTGTATA+AGG | + | chr4_2:6699852-6699871 | None:intergenic | 25.0% |
| ! | TTATACAAATGCTTGACAAA+TGG | - | chr4_2:6699851-6699870 | Msa0585660:intron | 25.0% |
| !! | TAATTTTACTATTTGGGCTT+AGG | - | chr4_2:6700086-6700105 | Msa0585660:intron | 25.0% |
| !! | AATTTTACTATTTGGGCTTA+GGG | - | chr4_2:6700087-6700106 | Msa0585660:intron | 25.0% |
| ! | AAAAAAAAAACAGTGATAGG+CGG | + | chr4_2:6700156-6700175 | None:intergenic | 25.0% |
| ! | AGCAAAAAAAAAACAGTGAT+AGG | + | chr4_2:6700159-6700178 | None:intergenic | 25.0% |
| ! | TGTAAATACTTTAGCGATAT+GGG | + | chr4_2:6700219-6700238 | None:intergenic | 25.0% |
| !! | CCTTAAACAACATTTTGAAT+CGG | + | chr4_2:6700253-6700272 | None:intergenic | 25.0% |
| ! | AAAGCTAGTAGCAAATAAAT+AGG | + | chr4_2:6700976-6700995 | None:intergenic | 25.0% |
| !!! | ACTAGCTTTTTCCTAAAAAA+AGG | - | chr4_2:6700987-6701006 | Msa0585660:intron | 25.0% |
| !!! | CTAGCTTTTTCCTAAAAAAA+GGG | - | chr4_2:6700988-6701007 | Msa0585660:intron | 25.0% |
| ! | TTTCCTAAAAAAAGGGATAA+TGG | - | chr4_2:6700995-6701014 | Msa0585660:intron | 25.0% |
| ! | TTCCTAAAAAAAGGGATAAT+GGG | - | chr4_2:6700996-6701015 | Msa0585660:intron | 25.0% |
| ! | TAAAAGGGGAAACAATTAAA+AGG | + | chr4_2:6701102-6701121 | None:intergenic | 25.0% |
| ! | TGTGTATTTGATTCATATTC+AGG | - | chr4_2:6701682-6701701 | Msa0585660:intron | 25.0% |
| ! | TTCTTCATAAAGTATGACTT+TGG | - | chr4_2:6701744-6701763 | Msa0585660:intron | 25.0% |
| ! | ATGCACATGTATTAAAATCA+TGG | - | chr4_2:6701918-6701937 | Msa0585660:intron | 25.0% |
| !! | TTATATTTCTGTTTCTTCCA+AGG | + | chr4_2:6702073-6702092 | None:intergenic | 25.0% |
| ! | ATATTTTACGACGATGATAC+AGG | - | chr4_2:6698000-6698019 | Msa0585660:three_prime_UTR | 30.0% |
| AACCTGAATTTCAATGTTAC+GGG | + | chr4_2:6698046-6698065 | None:intergenic | 30.0% | |
| GAAATAACATACCAATGTCA+AGG | + | chr4_2:6698211-6698230 | None:intergenic | 30.0% | |
| !!! | TGTTTGTTTTGTTTAGGTTG+TGG | - | chr4_2:6698432-6698451 | Msa0585660:intron | 30.0% |
| !! | TTAACTTGTAGATATCGCAT+TGG | - | chr4_2:6698619-6698638 | Msa0585660:intron | 30.0% |
| ! | GTTGTCAATCATAGATTTTG+TGG | - | chr4_2:6698720-6698739 | Msa0585660:intron | 30.0% |
| ! | ATAACAACAAAGCATTTGGT+TGG | + | chr4_2:6699016-6699035 | None:intergenic | 30.0% |
| ! | TATCTTTGATTTCAGGGTTT+AGG | - | chr4_2:6699330-6699349 | Msa0585660:intron | 30.0% |
| ! | ATCTTTGATTTCAGGGTTTA+GGG | - | chr4_2:6699331-6699350 | Msa0585660:intron | 30.0% |
| !!! | TTCGTTTTGGAATGTTTGAT+GGG | - | chr4_2:6699355-6699374 | Msa0585660:intron | 30.0% |
| ! | TTATCTAAAGCAAACCTGAA+TGG | + | chr4_2:6699397-6699416 | None:intergenic | 30.0% |
| ACATGTAAACCAAGAAAACT+TGG | + | chr4_2:6699606-6699625 | None:intergenic | 30.0% | |
| !!! | TTTTTGACTTGATAATGCAG+TGG | - | chr4_2:6699651-6699670 | Msa0585660:CDS | 30.0% |
| CATACTTCAATCTTAGATGA+GGG | + | chr4_2:6699706-6699725 | None:intergenic | 30.0% | |
| TCCAATGTATGTAAAGCATA+TGG | - | chr4_2:6699757-6699776 | Msa0585660:CDS | 30.0% | |
| TCCATATGCTTTACATACAT+TGG | + | chr4_2:6699761-6699780 | None:intergenic | 30.0% | |
| AAAAAAGTTGTAAAGAAGCG+AGG | + | chr4_2:6699800-6699819 | None:intergenic | 30.0% | |
| ATGTAAAAAAAGCCCTACAA+AGG | + | chr4_2:6699829-6699848 | None:intergenic | 30.0% | |
| ATTACTCTTGATGAAACGAA+TGG | + | chr4_2:6700012-6700031 | None:intergenic | 30.0% | |
| GTGTAAATACTTTAGCGATA+TGG | + | chr4_2:6700220-6700239 | None:intergenic | 30.0% | |
| ! | AACAACATTTTGAATCGGTA+TGG | + | chr4_2:6700248-6700267 | None:intergenic | 30.0% |
| ! | CCGATTCAAAATGTTGTTTA+AGG | - | chr4_2:6700250-6700269 | Msa0585660:intron | 30.0% |
| ! | CTTGACAAACAAAAGTTTTG+TGG | - | chr4_2:6701251-6701270 | Msa0585660:intron | 30.0% |
| ATGATATATGTTGACAGTCT+CGG | + | chr4_2:6701468-6701487 | None:intergenic | 30.0% | |
| TGAATCAAATACACAGATGT+GGG | + | chr4_2:6701677-6701696 | None:intergenic | 30.0% | |
| ATGAATCAAATACACAGATG+TGG | + | chr4_2:6701678-6701697 | None:intergenic | 30.0% | |
| ! | TAGAAGCATAAATCAATACC+AGG | + | chr4_2:6701780-6701799 | None:intergenic | 30.0% |
| GCTATAACCAATTTATGAAC+AGG | + | chr4_2:6701818-6701837 | None:intergenic | 30.0% | |
| TAAGATCTCTCTATCATTGA+TGG | - | chr4_2:6701874-6701893 | Msa0585660:intron | 30.0% | |
| CTTGCGAAAAATGTTAAAAG+AGG | + | chr4_2:6701982-6702001 | None:intergenic | 30.0% | |
| TGAACAAACAAAAATACTGC+AGG | - | chr4_2:6702024-6702043 | Msa0585660:intron | 30.0% | |
| ! | TTTTAGACAGAAATAGACCT+TGG | - | chr4_2:6702053-6702072 | Msa0585660:intron | 30.0% |
| ATAATAAGAACGAAAAGGGA+AGG | - | chr4_2:6702089-6702108 | Msa0585660:intron | 30.0% | |
| TAATAAGAACGAAAAGGGAA+GGG | - | chr4_2:6702090-6702109 | Msa0585660:intron | 30.0% | |
| !!! | GGAAAAATCGCTTTTGATTT+TGG | - | chr4_2:6702194-6702213 | Msa0585660:intron | 30.0% |
| GCAAGAAATGTTCAACATTA+AGG | + | chr4_2:6702230-6702249 | None:intergenic | 30.0% | |
| !!! | TTTCATGGCTTTTTTGTGTT+AGG | - | chr4_2:6702334-6702353 | Msa0585660:intron | 30.0% |
| TCATCGTCGTAAAATATCTC+CGG | + | chr4_2:6697997-6698016 | None:intergenic | 35.0% | |
| TTCAATGTTACGGGAATTAG+AGG | + | chr4_2:6698037-6698056 | None:intergenic | 35.0% | |
| TTCCCGTAACATTGAAATTC+AGG | - | chr4_2:6698041-6698060 | Msa0585660:three_prime_UTR | 35.0% | |
| CTTCTCAATTTACCCAATGA+CGG | - | chr4_2:6698170-6698189 | Msa0585660:three_prime_UTR | 35.0% | |
| ! | TTTTTATAGGTCACAGACAC+CGG | - | chr4_2:6698250-6698269 | Msa0585660:CDS | 35.0% |
| ATATGCACCTTCGATCATAA+GGG | - | chr4_2:6698354-6698373 | Msa0585660:CDS | 35.0% | |
| !!! | GTTTTGTTTAGGTTGTGGAT+CGG | - | chr4_2:6698437-6698456 | Msa0585660:intron | 35.0% |
| !!! | TTTTGTTTAGGTTGTGGATC+GGG | - | chr4_2:6698438-6698457 | Msa0585660:intron | 35.0% |
| !! | GACAACAATTTGCTGAAATC+AGG | + | chr4_2:6698706-6698725 | None:intergenic | 35.0% |
| TGTGGAAAATAGCAGTTTGT+AGG | - | chr4_2:6698738-6698757 | Msa0585660:intron | 35.0% | |
| GTAGGAATTCTGTTATGCTA+TGG | - | chr4_2:6698756-6698775 | Msa0585660:intron | 35.0% | |
| ! | GAGCATAACAACAAAGCATT+TGG | + | chr4_2:6699020-6699039 | None:intergenic | 35.0% |
| ! | ATTTTTATCAAGGGATGGAC+AGG | + | chr4_2:6699107-6699126 | None:intergenic | 35.0% |
| !!! | CTTCGTTTTGGAATGTTTGA+TGG | - | chr4_2:6699354-6699373 | Msa0585660:intron | 35.0% |
| !!! | TCGTTTTGGAATGTTTGATG+GGG | - | chr4_2:6699356-6699375 | Msa0585660:intron | 35.0% |
| ACTTATCCCAGATCAAAATG+GGG | + | chr4_2:6699571-6699590 | None:intergenic | 35.0% | |
| GACTTATCCCAGATCAAAAT+GGG | + | chr4_2:6699572-6699591 | None:intergenic | 35.0% | |
| TGACTTATCCCAGATCAAAA+TGG | + | chr4_2:6699573-6699592 | None:intergenic | 35.0% | |
| CCAAGAAAACTTGGTAGAAA+AGG | + | chr4_2:6699597-6699616 | None:intergenic | 35.0% | |
| ! | CCTTTTCTACCAAGTTTTCT+TGG | - | chr4_2:6699594-6699613 | Msa0585660:intron | 35.0% |
| GCATACTTCAATCTTAGATG+AGG | + | chr4_2:6699707-6699726 | None:intergenic | 35.0% | |
| ! | AGCAGTATTTCAAGTGTATC+CGG | - | chr4_2:6699880-6699899 | Msa0585660:intron | 35.0% |
| ATTCTTGTGAGAACTGATGA+AGG | - | chr4_2:6700184-6700203 | Msa0585660:intron | 35.0% | |
| AAGAAAACTAGGCTAAGAGT+GGG | + | chr4_2:6700765-6700784 | None:intergenic | 35.0% | |
| TTGGGTTCTGTTTAGAAGTT+AGG | - | chr4_2:6700828-6700847 | Msa0585660:intron | 35.0% | |
| TGGGTTCTGTTTAGAAGTTA+GGG | - | chr4_2:6700829-6700848 | Msa0585660:intron | 35.0% | |
| !!! | AGCCCATTATCCCTTTTTTT+AGG | + | chr4_2:6701001-6701020 | None:intergenic | 35.0% |
| !! | TAAAAAAAGGGATAATGGGC+TGG | - | chr4_2:6701000-6701019 | Msa0585660:intron | 35.0% |
| !! | AAAAAAAGGGATAATGGGCT+GGG | - | chr4_2:6701001-6701020 | Msa0585660:intron | 35.0% |
| !!! | CTTTTTTTGGTCAACTGAAC+AGG | + | chr4_2:6701074-6701093 | None:intergenic | 35.0% |
| !! | CTTTTAAGTGTGGAGAATCT+GGG | + | chr4_2:6701207-6701226 | None:intergenic | 35.0% |
| !! | ACTTTTAAGTGTGGAGAATC+TGG | + | chr4_2:6701208-6701227 | None:intergenic | 35.0% |
| !! | GATTCACACACTTTTAAGTG+TGG | + | chr4_2:6701217-6701236 | None:intergenic | 35.0% |
| ! | GAGTATCTTTTTCTCGTATG+TGG | - | chr4_2:6701569-6701588 | Msa0585660:intron | 35.0% |
| AATCAAATACACAGATGTGG+GGG | + | chr4_2:6701675-6701694 | None:intergenic | 35.0% | |
| GAATCAAATACACAGATGTG+GGG | + | chr4_2:6701676-6701695 | None:intergenic | 35.0% | |
| TTGAACATTTCTTGCGTTTC+TGG | - | chr4_2:6702235-6702254 | Msa0585660:CDS | 35.0% | |
| CTTGCAACATATTTGACTGA+TGG | + | chr4_2:6702287-6702306 | None:intergenic | 35.0% | |
| !!! | GGCTTTTTTGTGTTAGGTAA+TGG | - | chr4_2:6702340-6702359 | Msa0585660:intron | 35.0% |
| TTTACGACGATGATACAGGA+CGG | - | chr4_2:6698004-6698023 | Msa0585660:three_prime_UTR | 40.0% | |
| AACTTAGGAACACCGTCATT+GGG | + | chr4_2:6698185-6698204 | None:intergenic | 40.0% | |
| TAACTTAGGAACACCGTCAT+TGG | + | chr4_2:6698186-6698205 | None:intergenic | 40.0% | |
| CCAATGTCAAGGAGTAACTT+AGG | + | chr4_2:6698200-6698219 | None:intergenic | 40.0% | |
| CCTAAGTTACTCCTTGACAT+TGG | - | chr4_2:6698197-6698216 | Msa0585660:three_prime_UTR | 40.0% | |
| CATACGTGTGAGTGTCATAT+CGG | - | chr4_2:6698309-6698328 | Msa0585660:CDS | 40.0% | |
| CATATGCACCTTCGATCATA+AGG | - | chr4_2:6698353-6698372 | Msa0585660:CDS | 40.0% | |
| !! | ACTAGCATACCAAGCATTGA+GGG | + | chr4_2:6698522-6698541 | None:intergenic | 40.0% |
| ! | TACTAGCATACCAAGCATTG+AGG | + | chr4_2:6698523-6698542 | None:intergenic | 40.0% |
| TAAGTGCTTGTGAGACTGTT+TGG | + | chr4_2:6698964-6698983 | None:intergenic | 40.0% | |
| !! | CAACATCCCCATTTTGATCT+GGG | - | chr4_2:6699562-6699581 | Msa0585660:intron | 40.0% |
| ! | ACACGTTGATCATCGTTTTC+CGG | + | chr4_2:6699902-6699921 | None:intergenic | 40.0% |
| GTAAATCCAGCTTTCATTGC+AGG | + | chr4_2:6699938-6699957 | None:intergenic | 40.0% | |
| GCAATGAAAGCTGGATTTAC+CGG | - | chr4_2:6699938-6699957 | Msa0585660:intron | 40.0% | |
| CAATGAAAGCTGGATTTACC+GGG | - | chr4_2:6699939-6699958 | Msa0585660:intron | 40.0% | |
| AATGAAAGCTGGATTTACCG+GGG | - | chr4_2:6699940-6699959 | Msa0585660:intron | 40.0% | |
| ATAATCCACCACTATATCCC+CGG | + | chr4_2:6699960-6699979 | None:intergenic | 40.0% | |
| !! | GGGATATAGTGGTGGATTAT+CGG | - | chr4_2:6699960-6699979 | Msa0585660:intron | 40.0% |
| !! | GGATATAGTGGTGGATTATC+GGG | - | chr4_2:6699961-6699980 | Msa0585660:intron | 40.0% |
| !! | AAAGAGTGCCTATAAGCCAT+GGG | + | chr4_2:6700131-6700150 | None:intergenic | 40.0% |
| TGCTATTGACAGCATAGATC+GGG | + | chr4_2:6700494-6700513 | None:intergenic | 40.0% | |
| CTGCTATTGACAGCATAGAT+CGG | + | chr4_2:6700495-6700514 | None:intergenic | 40.0% | |
| TTGACAAAGGTAGAGGTTGA+TGG | + | chr4_2:6700729-6700748 | None:intergenic | 40.0% | |
| CAAGAAAACTAGGCTAAGAG+TGG | + | chr4_2:6700766-6700785 | None:intergenic | 40.0% | |
| !! | TCTTAGCCTAGTTTTCTTGC+AGG | - | chr4_2:6700767-6700786 | Msa0585660:intron | 40.0% |
| !! | CTTAGCCTAGTTTTCTTGCA+GGG | - | chr4_2:6700768-6700787 | Msa0585660:intron | 40.0% |
| AAAAGCCCTGCAAGAAAACT+AGG | + | chr4_2:6700776-6700795 | None:intergenic | 40.0% | |
| !! | AGGGCTTTTCTTTAGCTCAA+GGG | - | chr4_2:6700787-6700806 | Msa0585660:intron | 40.0% |
| !! | TCTTTAGCTCAAGGGTTTTC+TGG | - | chr4_2:6700795-6700814 | Msa0585660:intron | 40.0% |
| !! | TTTTCTGGCAGTTGGGTTTT+GGG | - | chr4_2:6700810-6700829 | Msa0585660:intron | 40.0% |
| GTCTGTAAGTGTAGATCAGT+TGG | - | chr4_2:6701140-6701159 | Msa0585660:intron | 40.0% | |
| AGTGTGTGAATCTAACCACT+AGG | - | chr4_2:6701225-6701244 | Msa0585660:intron | 40.0% | |
| TTGTTTGTCAAGTAGCCTAG+TGG | + | chr4_2:6701243-6701262 | None:intergenic | 40.0% | |
| ! | TCGTCTTCAGTTTTACCTTC+GGG | + | chr4_2:6701611-6701630 | None:intergenic | 40.0% |
| ! | GTCGTCTTCAGTTTTACCTT+CGG | + | chr4_2:6701612-6701631 | None:intergenic | 40.0% |
| ATCAAATACACAGATGTGGG+GGG | + | chr4_2:6701674-6701693 | None:intergenic | 40.0% | |
| CCAATTTATGAACAGGTGCT+TGG | + | chr4_2:6701811-6701830 | None:intergenic | 40.0% | |
| CCAAGCACCTGTTCATAAAT+TGG | - | chr4_2:6701808-6701827 | Msa0585660:intron | 40.0% | |
| GGAATGGATAAAGAGGAAGA+AGG | - | chr4_2:6702111-6702130 | Msa0585660:intron | 40.0% | |
| ! | GCACGAGATGCAATTTTCAA+TGG | + | chr4_2:6702261-6702280 | None:intergenic | 40.0% |
| ! | GTTAGGTAATGGTCATGTAG+CGG | - | chr4_2:6702351-6702370 | Msa0585660:intron | 40.0% |
| ! | GACAGAATACATCTAGCTTG+TGG | - | chr4_2:6702403-6702422 | Msa0585660:CDS | 40.0% |
| TCGTCGTAAAATATCTCCGG+TGG | + | chr4_2:6697994-6698013 | None:intergenic | 45.0% | |
| CAATGTGTCAGTGTCGTATC+CGG | + | chr4_2:6698272-6698291 | None:intergenic | 45.0% | |
| TGTGAGTGTCATATCGGACA+TGG | - | chr4_2:6698315-6698334 | Msa0585660:CDS | 45.0% | |
| TCATATCGGACATGGACATG+TGG | - | chr4_2:6698323-6698342 | Msa0585660:CDS | 45.0% | |
| ATCATAAGGGTCGGTGATTC+AGG | - | chr4_2:6698367-6698386 | Msa0585660:CDS | 45.0% | |
| TCATAAGGGTCGGTGATTCA+GGG | - | chr4_2:6698368-6698387 | Msa0585660:CDS | 45.0% | |
| !! | GACCTTTTACTCGGTGACAT+GGG | - | chr4_2:6698659-6698678 | Msa0585660:intron | 45.0% |
| CTGAATGGCAGATATACCGA+TGG | + | chr4_2:6699382-6699401 | None:intergenic | 45.0% | |
| CATCGGTATATCTGCCATTC+AGG | - | chr4_2:6699380-6699399 | Msa0585660:intron | 45.0% | |
| CCAGATCAAAATGGGGATGT+TGG | + | chr4_2:6699564-6699583 | None:intergenic | 45.0% | |
| !! | CCAACATCCCCATTTTGATC+TGG | - | chr4_2:6699561-6699580 | Msa0585660:intron | 45.0% |
| TCTTAGATGAGGGTTGTGAG+AGG | + | chr4_2:6699696-6699715 | None:intergenic | 45.0% | |
| TTGAGTCCTGCAATGAAAGC+TGG | - | chr4_2:6699929-6699948 | Msa0585660:intron | 45.0% | |
| TGGATTTACCGGGGATATAG+TGG | - | chr4_2:6699949-6699968 | Msa0585660:intron | 45.0% | |
| ATTTACCGGGGATATAGTGG+TGG | - | chr4_2:6699952-6699971 | Msa0585660:intron | 45.0% | |
| ATGGGAAATCCTCCCAAGTT+AGG | + | chr4_2:6700113-6700132 | None:intergenic | 45.0% | |
| TAACTTGGGAGGATTTCCCA+TGG | - | chr4_2:6700112-6700131 | Msa0585660:intron | 45.0% | |
| GAGGATTTCCCATGGCTTAT+AGG | - | chr4_2:6700120-6700139 | Msa0585660:intron | 45.0% | |
| !! | CAAAGAGTGCCTATAAGCCA+TGG | + | chr4_2:6700132-6700151 | None:intergenic | 45.0% |
| TATGCTGTCAATAGCAGCTG+TGG | - | chr4_2:6700498-6700517 | Msa0585660:CDS | 45.0% | |
| ATGCTGTCAATAGCAGCTGT+GGG | - | chr4_2:6700499-6700518 | Msa0585660:CDS | 45.0% | |
| ! | AATTTGTTCTCCTCGTTCCC+TGG | - | chr4_2:6700666-6700685 | Msa0585660:intron | 45.0% |
| !! | ACAAAGGTAGAGGTTGATGG+CGG | + | chr4_2:6700726-6700745 | None:intergenic | 45.0% |
| !! | CAGGGCTTTTCTTTAGCTCA+AGG | - | chr4_2:6700786-6700805 | Msa0585660:intron | 45.0% |
| !! | TCAAGGGTTTTCTGGCAGTT+GGG | - | chr4_2:6700803-6700822 | Msa0585660:intron | 45.0% |
| !! | GTTTTCTGGCAGTTGGGTTT+TGG | - | chr4_2:6700809-6700828 | Msa0585660:intron | 45.0% |
| ACCCTTCTGGTAGCTAATGA+GGG | - | chr4_2:6700933-6700952 | Msa0585660:intron | 45.0% | |
| TCCCTCATTAGCTACCAGAA+GGG | + | chr4_2:6700937-6700956 | None:intergenic | 45.0% | |
| !! | TAGATCAGTTGGTAGCTACC+AGG | - | chr4_2:6701151-6701170 | Msa0585660:intron | 45.0% |
| !! | AGATCAGTTGGTAGCTACCA+GGG | - | chr4_2:6701152-6701171 | Msa0585660:intron | 45.0% |
| TACCAGGGACATCAGTTGTA+GGG | - | chr4_2:6701167-6701186 | Msa0585660:intron | 45.0% | |
| ATGTTGACAGTCTCGGATAG+AGG | + | chr4_2:6701461-6701480 | None:intergenic | 45.0% | |
| ! | TCAGTTTTACCTTCGGGCAA+GGG | + | chr4_2:6701605-6701624 | None:intergenic | 45.0% |
| ! | TTCAGTTTTACCTTCGGGCA+AGG | + | chr4_2:6701606-6701625 | None:intergenic | 45.0% |
| ! | ATGAACAGGTGCTTGGTGAT+GGG | + | chr4_2:6701804-6701823 | None:intergenic | 45.0% |
| ! | TATGAACAGGTGCTTGGTGA+TGG | + | chr4_2:6701805-6701824 | None:intergenic | 45.0% |
| AGAACGAAAAGGGAAGGGAA+TGG | - | chr4_2:6702095-6702114 | Msa0585660:intron | 45.0% | |
| AGGGAAGGGAATGGATAAAG+AGG | - | chr4_2:6702104-6702123 | Msa0585660:intron | 45.0% | |
| AAGGAGCAGATGAGAAGAAG+AGG | - | chr4_2:6702130-6702149 | Msa0585660:intron | 45.0% | |
| CAGATACCAAGTACACTGGT+CGG | - | chr4_2:6702167-6702186 | Msa0585660:intron | 45.0% | |
| !!! | AAGTAATATATTTTTTATAT+TGG | - | chr4_2:6700430-6700449 | Msa0585660:intron | 5.0% |
| !! | ATTAAATATTAATAAAATAG+TGG | - | chr4_2:6701430-6701449 | Msa0585660:intron | 5.0% |
| TTCAATGACTGAGCGAGCAC+TGG | - | chr4_2:6698145-6698164 | Msa0585660:three_prime_UTR | 50.0% | |
| GCACCTTCGATCATAAGGGT+CGG | - | chr4_2:6698358-6698377 | Msa0585660:CDS | 50.0% | |
| TCACCGACCCTTATGATCGA+AGG | + | chr4_2:6698364-6698383 | None:intergenic | 50.0% | |
| GGTGAGGTAATCACAGAGAG+TGG | - | chr4_2:6698468-6698487 | Msa0585660:intron | 50.0% | |
| TCACAGAGAGTGGACACCAT+TGG | - | chr4_2:6698478-6698497 | Msa0585660:intron | 50.0% | |
| CACAGAGAGTGGACACCATT+GGG | - | chr4_2:6698479-6698498 | Msa0585660:intron | 50.0% | |
| CAATGTCGAGACCAACCCAA+TGG | + | chr4_2:6698497-6698516 | None:intergenic | 50.0% | |
| GACATTGCACCCTCAATGCT+TGG | - | chr4_2:6698510-6698529 | Msa0585660:intron | 50.0% | |
| AGATATCGCATTGGAGCGTG+AGG | - | chr4_2:6698628-6698647 | Msa0585660:intron | 50.0% | |
| ! | GTTGAGGGCGACCTTTTACT+CGG | - | chr4_2:6698650-6698669 | Msa0585660:intron | 50.0% |
| !! | CGACCTTTTACTCGGTGACA+TGG | - | chr4_2:6698658-6698677 | Msa0585660:intron | 50.0% |
| GACCCATGTCACCGAGTAAA+AGG | + | chr4_2:6698664-6698683 | None:intergenic | 50.0% | |
| ! | TTTACTCGGTGACATGGGTC+AGG | - | chr4_2:6698664-6698683 | Msa0585660:intron | 50.0% |
| !! | CAGGGTTTAGGGCTTCGTTT+TGG | - | chr4_2:6699342-6699361 | Msa0585660:intron | 50.0% |
| GGAATGTTTGATGGGGCCAT+CGG | - | chr4_2:6699363-6699382 | Msa0585660:intron | 50.0% | |
| !! | TAGTGGTGGATTATCGGGAC+AGG | - | chr4_2:6699966-6699985 | Msa0585660:intron | 50.0% |
| TTTGGGCTTAGGGCCTAACT+TGG | - | chr4_2:6700097-6700116 | Msa0585660:intron | 50.0% | |
| TTGGGCTTAGGGCCTAACTT+GGG | - | chr4_2:6700098-6700117 | Msa0585660:intron | 50.0% | |
| GTTGAAACTCTCTTCTGCGC+AGG | + | chr4_2:6700596-6700615 | None:intergenic | 50.0% | |
| ACGGAGGTTGACAAAGGTAG+AGG | + | chr4_2:6700736-6700755 | None:intergenic | 50.0% | |
| ACTAGGCTAAGAGTGGGTCT+GGG | + | chr4_2:6700759-6700778 | None:intergenic | 50.0% | |
| AACTAGGCTAAGAGTGGGTC+TGG | + | chr4_2:6700760-6700779 | None:intergenic | 50.0% | |
| !! | CTCAAGGGTTTTCTGGCAGT+TGG | - | chr4_2:6700802-6700821 | Msa0585660:intron | 50.0% |
| TCCACCCCTTGTATTCTCTG+AGG | - | chr4_2:6700885-6700904 | Msa0585660:intron | 50.0% | |
| CCACCCCTTGTATTCTCTGA+GGG | - | chr4_2:6700886-6700905 | Msa0585660:intron | 50.0% | |
| !! | CTTCCGGTGCTGTATATGAG+GGG | + | chr4_2:6700912-6700931 | None:intergenic | 50.0% |
| !! | CCTTCCGGTGCTGTATATGA+GGG | + | chr4_2:6700913-6700932 | None:intergenic | 50.0% |
| !! | TCCTTCCGGTGCTGTATATG+AGG | + | chr4_2:6700914-6700933 | None:intergenic | 50.0% |
| GACCCTTCTGGTAGCTAATG+AGG | - | chr4_2:6700932-6700951 | Msa0585660:intron | 50.0% | |
| GTCCCTCATTAGCTACCAGA+AGG | + | chr4_2:6700938-6700957 | None:intergenic | 50.0% | |
| CTACCAGGGACATCAGTTGT+AGG | - | chr4_2:6701166-6701185 | Msa0585660:intron | 50.0% | |
| ACCAGGGACATCAGTTGTAG+GGG | - | chr4_2:6701168-6701187 | Msa0585660:intron | 50.0% | |
| ! | GACTTTGGTCACAAAGCACC+TGG | - | chr4_2:6701759-6701778 | Msa0585660:intron | 50.0% |
| CCAGTGTACTTGGTATCTGG+AGG | + | chr4_2:6702166-6702185 | None:intergenic | 50.0% | |
| CCTCCAGATACCAAGTACAC+TGG | - | chr4_2:6702163-6702182 | Msa0585660:intron | 50.0% | |
| CGACCAGTGTACTTGGTATC+TGG | + | chr4_2:6702169-6702188 | None:intergenic | 50.0% | |
| CCAAGTACACTGGTCGGAAA+CGG | - | chr4_2:6702173-6702192 | Msa0585660:intron | 50.0% | |
| GGTTGTGGATCGGGACTTAG+CGG | - | chr4_2:6698447-6698466 | Msa0585660:intron | 55.0% | |
| GAGAGTGGACACCATTGGGT+TGG | - | chr4_2:6698483-6698502 | Msa0585660:intron | 55.0% | |
| GCATTGGAGCGTGAGGTTGA+GGG | - | chr4_2:6698635-6698654 | Msa0585660:intron | 55.0% | |
| AATAGCAGCTGTGGGCGATG+TGG | - | chr4_2:6700507-6700526 | Msa0585660:CDS | 55.0% | |
| !! | TGGCTAGTCTCTGCCACACA+CGG | - | chr4_2:6700535-6700554 | Msa0585660:CDS | 55.0% |
| !! | GAAGAGCATTGCGCTGCTAC+AGG | - | chr4_2:6700638-6700657 | Msa0585660:intron | 55.0% |
| ! | TCTGGGACGGAGGTTGACAA+AGG | + | chr4_2:6700742-6700761 | None:intergenic | 55.0% |
| CCCTCAGAGAATACAAGGGG+TGG | + | chr4_2:6700889-6700908 | None:intergenic | 55.0% | |
| GGGCCCTCAGAGAATACAAG+GGG | + | chr4_2:6700892-6700911 | None:intergenic | 55.0% | |
| GGGGCCCTCAGAGAATACAA+GGG | + | chr4_2:6700893-6700912 | None:intergenic | 55.0% | |
| AGGGGCCCTCAGAGAATACA+AGG | + | chr4_2:6700894-6700913 | None:intergenic | 55.0% | |
| ! | CCCTCATATACAGCACCGGA+AGG | - | chr4_2:6700910-6700929 | Msa0585660:intron | 55.0% |
| AGCTACCAGAAGGGTCCTTC+CGG | + | chr4_2:6700928-6700947 | None:intergenic | 55.0% | |
| !! | AAGGGATAATGGGCTGGGTC+TGG | - | chr4_2:6701006-6701025 | Msa0585660:intron | 55.0% |
| GACAGTCTCGGATAGAGGAG+TGG | + | chr4_2:6701456-6701475 | None:intergenic | 55.0% | |
| !! | CAAGAAGTACCCTTGCCCGA+AGG | - | chr4_2:6701593-6701612 | Msa0585660:intron | 55.0% |
| CCGTTTCCGACCAGTGTACT+TGG | + | chr4_2:6702176-6702195 | None:intergenic | 55.0% | |
| TGGATCGGGACTTAGCGGTG+AGG | - | chr4_2:6698452-6698471 | Msa0585660:intron | 60.0% | |
| CGCATTGGAGCGTGAGGTTG+AGG | - | chr4_2:6698634-6698653 | Msa0585660:intron | 60.0% | |
| GGCTTAGGGCCTAACTTGGG+AGG | - | chr4_2:6700101-6700120 | Msa0585660:intron | 60.0% | |
| CTGTGGGCGATGTGGAACAG+TGG | - | chr4_2:6700515-6700534 | Msa0585660:CDS | 60.0% | |
| CTAGTCTCTGCCACACACGG+CGG | - | chr4_2:6700538-6700557 | Msa0585660:CDS | 60.0% | |
| !! | AGGTAGAGGTTGATGGCGGC+TGG | + | chr4_2:6700722-6700741 | None:intergenic | 60.0% |
| ! | TAAGAGTGGGTCTGGGACGG+AGG | + | chr4_2:6700752-6700771 | None:intergenic | 60.0% |
| GGCTAAGAGTGGGTCTGGGA+CGG | + | chr4_2:6700755-6700774 | None:intergenic | 60.0% | |
| GGGCCCCTCATATACAGCAC+CGG | - | chr4_2:6700906-6700925 | Msa0585660:intron | 60.0% | |
| GCCCCTACAACTGATGTCCC+TGG | + | chr4_2:6701172-6701191 | None:intergenic | 60.0% | |
| GAAGACGACGACGACGACAG+TGG | - | chr4_2:6701623-6701642 | Msa0585660:intron | 60.0% | |
| ACCAGAGGCGGTAGCTCCAC+CGG | - | chr4_2:6697975-6697994 | Msa0585660:three_prime_UTR | 65.0% | |
| TGCCACACACGGCGGAACAG+TGG | - | chr4_2:6700546-6700565 | Msa0585660:CDS | 65.0% | |
| AGCCACTGTTCCGCCGTGTG+TGG | + | chr4_2:6700551-6700570 | None:intergenic | 65.0% | |
| CCTCGTTCCCTGGTTGCCAC+CGG | - | chr4_2:6700676-6700695 | Msa0585660:intron | 65.0% | |
| TGGAACGCCGGTGGCAACCA+GGG | + | chr4_2:6700686-6700705 | None:intergenic | 65.0% | |
| ATGGAACGCCGGTGGCAACC+AGG | + | chr4_2:6700687-6700706 | None:intergenic | 65.0% | |
| GATGGCAGGGGATGGAACGC+CGG | + | chr4_2:6700698-6700717 | None:intergenic | 65.0% | |
| !! | AGGTTGATGGCGGCTGGCGA+TGG | + | chr4_2:6700716-6700735 | None:intergenic | 65.0% |
| ! | CAGCACCGGAAGGACCCTTC+TGG | - | chr4_2:6700920-6700939 | Msa0585660:intron | 65.0% |
| TCCGGTGGAGCTACCGCCTC+TGG | + | chr4_2:6697979-6697998 | None:intergenic | 70.0% | |
| CCGGTGGCAACCAGGGAACG+AGG | + | chr4_2:6700679-6700698 | None:intergenic | 70.0% | |
| ATGGCGGCTGGCGATGGCAG+GGG | + | chr4_2:6700710-6700729 | None:intergenic | 70.0% | |
| ! | GATGGCGGCTGGCGATGGCA+GGG | + | chr4_2:6700711-6700730 | None:intergenic | 70.0% |
| !! | TGATGGCGGCTGGCGATGGC+AGG | + | chr4_2:6700712-6700731 | None:intergenic | 70.0% |
| GGCAGGGGATGGAACGCCGG+TGG | + | chr4_2:6700695-6700714 | None:intergenic | 75.0% | |
| CGGCTGGCGATGGCAGGGGA+TGG | + | chr4_2:6700706-6700725 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 6697964 | 6702489 | 6697964 | ID=Msa0585660;Name=Msa0585660 |
| chr4_2 | mRNA | 6697964 | 6702489 | 6697964 | ID=Msa0585660-mRNA-1;Parent=Msa0585660;Name=Msa0585660-mRNA-1;_AED=0.49;_eAED=0.49;_QI=0|0.11|0.1|0.3|1|1|10|279|345 |
| chr4_2 | exon | 6697964 | 6698407 | 6697964 | ID=Msa0585660-mRNA-1:exon:1666;Parent=Msa0585660-mRNA-1 |
| chr4_2 | exon | 6698789 | 6698856 | 6698789 | ID=Msa0585660-mRNA-1:exon:1665;Parent=Msa0585660-mRNA-1 |
| chr4_2 | exon | 6699622 | 6699851 | 6699622 | ID=Msa0585660-mRNA-1:exon:1664;Parent=Msa0585660-mRNA-1 |
| chr4_2 | exon | 6700466 | 6700618 | 6700466 | ID=Msa0585660-mRNA-1:exon:1663;Parent=Msa0585660-mRNA-1 |
| chr4_2 | exon | 6700733 | 6700782 | 6700733 | ID=Msa0585660-mRNA-1:exon:1662;Parent=Msa0585660-mRNA-1 |
| chr4_2 | exon | 6701052 | 6701108 | 6701052 | ID=Msa0585660-mRNA-1:exon:1661;Parent=Msa0585660-mRNA-1 |
| chr4_2 | exon | 6701768 | 6701823 | 6701768 | ID=Msa0585660-mRNA-1:exon:1660;Parent=Msa0585660-mRNA-1 |
| chr4_2 | exon | 6701922 | 6702005 | 6701922 | ID=Msa0585660-mRNA-1:exon:1659;Parent=Msa0585660-mRNA-1 |
| chr4_2 | exon | 6702235 | 6702310 | 6702235 | ID=Msa0585660-mRNA-1:exon:1658;Parent=Msa0585660-mRNA-1 |
| chr4_2 | exon | 6702391 | 6702489 | 6702391 | ID=Msa0585660-mRNA-1:exon:1657;Parent=Msa0585660-mRNA-1 |
| chr4_2 | CDS | 6702391 | 6702489 | 6702391 | ID=Msa0585660-mRNA-1:cds;Parent=Msa0585660-mRNA-1 |
| chr4_2 | CDS | 6702235 | 6702310 | 6702235 | ID=Msa0585660-mRNA-1:cds;Parent=Msa0585660-mRNA-1 |
| chr4_2 | CDS | 6701922 | 6702005 | 6701922 | ID=Msa0585660-mRNA-1:cds;Parent=Msa0585660-mRNA-1 |
| chr4_2 | CDS | 6701768 | 6701823 | 6701768 | ID=Msa0585660-mRNA-1:cds;Parent=Msa0585660-mRNA-1 |
| chr4_2 | CDS | 6701052 | 6701108 | 6701052 | ID=Msa0585660-mRNA-1:cds;Parent=Msa0585660-mRNA-1 |
| chr4_2 | CDS | 6700733 | 6700782 | 6700733 | ID=Msa0585660-mRNA-1:cds;Parent=Msa0585660-mRNA-1 |
| chr4_2 | CDS | 6700466 | 6700618 | 6700466 | ID=Msa0585660-mRNA-1:cds;Parent=Msa0585660-mRNA-1 |
| chr4_2 | CDS | 6699622 | 6699851 | 6699622 | ID=Msa0585660-mRNA-1:cds;Parent=Msa0585660-mRNA-1 |
| chr4_2 | CDS | 6698789 | 6698856 | 6698789 | ID=Msa0585660-mRNA-1:cds;Parent=Msa0585660-mRNA-1 |
| chr4_2 | CDS | 6698243 | 6698407 | 6698243 | ID=Msa0585660-mRNA-1:cds;Parent=Msa0585660-mRNA-1 |
| chr4_2 | three_prime_UTR | 6697964 | 6698242 | 6697964 | ID=Msa0585660-mRNA-1:three_prime_utr;Parent=Msa0585660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
