Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585630 | XP_003604281.1 | 92.281 | 285 | 19 | 2 | 1 | 283 | 1 | 284 | 0.0 | 538 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585630 | sp|Q9LVD0|RID2_ARATH | 65.744 | 289 | 93 | 2 | 1 | 283 | 1 | 289 | 1.57e-137 | 392 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0357900 | Msa0585630 | 0.808241 | 3.411595e-50 | -8.615850e-47 |
| Msa0492890 | Msa0585630 | 0.800826 | 1.201181e-48 | -8.615850e-47 |
| Msa0529270 | Msa0585630 | 0.878694 | 2.283066e-69 | -8.615850e-47 |
| Msa0585630 | Msa0585660 | 0.911887 | 3.654676e-83 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585630 | MtrunA17_Chr4g0001521 | 92.281 | 285 | 19 | 2 | 1 | 283 | 1 | 284 | 0.0 | 538 |
| Msa0585630 | MtrunA17_Chr4g0072031 | 72.165 | 291 | 73 | 3 | 1 | 283 | 1 | 291 | 1.85e-148 | 417 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585630 | AT5G57280.1 | 65.744 | 289 | 93 | 2 | 1 | 283 | 1 | 289 | 1.60e-138 | 392 |
Find 81 sgRNAs with CRISPR-Local
Find 312 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAACATTTCTTGCGTTTC+TGG | 0.060479 | 4_2:-6684588 | Msa0585630:three_prime_UTR |
| TATCTTTGATTTCAGGGTTT+AGG | 0.182180 | 4_2:-6687509 | Msa0585630:intron |
| ATCTTTGATTTCAGGGTTTA+GGG | 0.182277 | 4_2:-6687508 | Msa0585630:intron |
| AATTTAATTGTTACATTTCA+TGG | 0.202021 | 4_2:-6684504 | Msa0585630:three_prime_UTR |
| TTCCCGTAACATTGAAATTC+AGG | 0.224195 | 4_2:-6688776 | Msa0585630:intron |
| GTTTGTATACTAATATTCTA+TGG | 0.282409 | 4_2:-6684442 | Msa0585630:three_prime_UTR |
| GCAATGAAAGCTGGATTTAC+TGG | 0.283729 | 4_2:-6686900 | Msa0585630:CDS |
| GTAAATCCAGCTTTCATTGC+AGG | 0.296762 | 4_2:+6686903 | None:intergenic |
| ATTTGTCAAGCATTTGTATA+AGG | 0.304310 | 4_2:+6686989 | None:intergenic |
| CATCGGTATATCTGCCATTC+AGG | 0.313191 | 4_2:-6687459 | Msa0585630:intron |
| GCAAGAAATGTTCAACATTA+AGG | 0.324321 | 4_2:+6684596 | None:intergenic |
| CGACCAGTGTACTTGGTATC+TGG | 0.329329 | 4_2:+6684657 | None:intergenic |
| TTCAATGTTACGGGAATTAG+AGG | 0.341768 | 4_2:+6688783 | None:intergenic |
| CCGTTTCCGACCAGTGTACT+TGG | 0.346432 | 4_2:+6684650 | None:intergenic |
| GGGATATAGTGGTGGATTAT+CGG | 0.357209 | 4_2:-6686878 | Msa0585630:CDS |
| GACCCATGTCACCGAGTAAA+AGG | 0.358459 | 4_2:+6688174 | None:intergenic |
| AAACCTGAATTTCAATGTTA+CGG | 0.373267 | 4_2:+6688773 | None:intergenic |
| CAGGGTTTAGGGCTTCGTTT+TGG | 0.382986 | 4_2:-6687497 | Msa0585630:CDS |
| AACCTGAATTTCAATGTTAC+GGG | 0.383633 | 4_2:+6688774 | None:intergenic |
| CGCATTGGAGCGTGAGGTTG+AGG | 0.393884 | 4_2:-6688201 | Msa0585630:CDS |
| GGATATAGTGGTGGATTATC+GGG | 0.407688 | 4_2:-6686877 | Msa0585630:CDS |
| TAACTTAGGAACACCGTCAT+TGG | 0.426115 | 4_2:+6688638 | None:intergenic |
| TTATATTTCTGTTTCTTCCA+AGG | 0.434075 | 4_2:+6684753 | None:intergenic |
| TCCGGTGGAGCTACCGCCTC+TGG | 0.440839 | 4_2:+6688841 | None:intergenic |
| AGGGAAGGGAATGGATAAAG+AGG | 0.451166 | 4_2:-6684719 | Msa0585630:CDS |
| GAAATATAATAAGAACGAAA+AGG | 0.457776 | 4_2:-6684739 | Msa0585630:CDS |
| TTTAAGTTATTTAATTGTAT+CGG | 0.459049 | 4_2:-6684396 | Msa0585630:three_prime_UTR |
| AGCAGTATTTCAAGTGTATC+CGG | 0.461795 | 4_2:-6686958 | Msa0585630:CDS |
| CAATGAAAGCTGGATTTACT+GGG | 0.464031 | 4_2:-6686899 | Msa0585630:CDS |
| TTCAATGACTGAGCGAGCAC+TGG | 0.469446 | 4_2:-6688676 | Msa0585630:CDS |
| TGGATTTACTGGGGATATAG+TGG | 0.471114 | 4_2:-6686889 | Msa0585630:CDS |
| CACAGAGAGTGGACACCATT+GGG | 0.471845 | 4_2:-6688361 | Msa0585630:CDS |
| TTTACTCGGTGACATGGGTC+AGG | 0.486959 | 4_2:-6688171 | Msa0585630:intron |
| AAGGAGCAGATGAGAAGAAG+AGG | 0.488596 | 4_2:-6684693 | Msa0585630:CDS |
| TTATACAAATGCTTGACAAA+TGG | 0.490254 | 4_2:-6686987 | Msa0585630:CDS |
| CTTGCAACATATTTGACTGA+TGG | 0.493604 | 4_2:+6684539 | None:intergenic |
| ACCAGAGGCGGTAGCTCCAC+CGG | 0.499290 | 4_2:-6688842 | Msa0585630:CDS |
| GACATTGCACCCTCAATGCT+TGG | 0.507243 | 4_2:-6688330 | Msa0585630:intron |
| AAATATAATAAGAACGAAAA+GGG | 0.511948 | 4_2:-6684738 | Msa0585630:CDS |
| AACTTAGGAACACCGTCATT+GGG | 0.512998 | 4_2:+6688639 | None:intergenic |
| TTGAGTCCTGCAATGAAAGC+TGG | 0.520754 | 4_2:-6686909 | Msa0585630:CDS |
| CCAAGTACACTGGTCGGAAA+CGG | 0.520993 | 4_2:-6684650 | Msa0585630:CDS |
| CCAATGTCAAGGAGTAACTT+AGG | 0.523073 | 4_2:+6688624 | None:intergenic |
| TCACAGAGAGTGGACACCAT+TGG | 0.529338 | 4_2:-6688362 | Msa0585630:CDS |
| GCATTGGAGCGTGAGGTTGA+GGG | 0.531379 | 4_2:-6688200 | Msa0585630:CDS |
| AGAACGAAAAGGGAAGGGAA+TGG | 0.533720 | 4_2:-6684728 | Msa0585630:CDS |
| ACTAGCATACCAAGCATTGA+GGG | 0.538511 | 4_2:+6688321 | None:intergenic |
| TTAACTTGTAGATATCGCAT+TGG | 0.541703 | 4_2:-6688216 | Msa0585630:intron |
| TTATCTAAAGCAAACCTGAA+TGG | 0.544627 | 4_2:+6687445 | None:intergenic |
| GGAATGTTTGATGGGGCCAT+CGG | 0.547297 | 4_2:-6687476 | Msa0585630:CDS |
| ATAATAAGAACGAAAAGGGA+AGG | 0.547716 | 4_2:-6684734 | Msa0585630:CDS |
| TACTAGCATACCAAGCATTG+AGG | 0.548542 | 4_2:+6688320 | None:intergenic |
| CCTAAGTTACTCCTTGACAT+TGG | 0.548757 | 4_2:-6688624 | Msa0585630:intron |
| GGTTGTGGATCGGGACTTAG+CGG | 0.566307 | 4_2:-6688393 | Msa0585630:CDS |
| GCATACTTCAATCTTAGATG+AGG | 0.569225 | 4_2:+6687134 | None:intergenic |
| TAGTGGTGGATTATCGGGAC+AGG | 0.569371 | 4_2:-6686872 | Msa0585630:intron |
| TCATCGTCGTAAAATATCTC+CGG | 0.571583 | 4_2:+6688823 | None:intergenic |
| CATACTTCAATCTTAGATGA+GGG | 0.573227 | 4_2:+6687135 | None:intergenic |
| GACAGAATACATCTAGCTTG+TGG | 0.593682 | 4_2:-6684420 | Msa0585630:three_prime_UTR |
| GAAATAACATACCAATGTCA+AGG | 0.594135 | 4_2:+6688613 | None:intergenic |
| TAATAAGAACGAAAAGGGAA+GGG | 0.599558 | 4_2:-6684733 | Msa0585630:CDS |
| CTTCTCAATTTACCCAATGA+CGG | 0.600645 | 4_2:-6688651 | Msa0585630:CDS |
| GGAATGGATAAAGAGGAAGA+AGG | 0.613907 | 4_2:-6684712 | Msa0585630:CDS |
| CAGATACCAAGTACACTGGT+CGG | 0.615749 | 4_2:-6684656 | Msa0585630:CDS |
| ATTTACTGGGGATATAGTGG+TGG | 0.619275 | 4_2:-6686886 | Msa0585630:CDS |
| TCGTCGTAAAATATCTCCGG+TGG | 0.621804 | 4_2:+6688826 | None:intergenic |
| GTTAGGTAATGGTCATGTAG+CGG | 0.624903 | 4_2:-6684472 | Msa0585630:three_prime_UTR |
| GAGAGTGGACACCATTGGGT+TGG | 0.626926 | 4_2:-6688357 | Msa0585630:CDS |
| CAATGTCGAGACCAACCCAA+TGG | 0.632121 | 4_2:+6688346 | None:intergenic |
| AGATATCGCATTGGAGCGTG+AGG | 0.647913 | 4_2:-6688207 | Msa0585630:CDS |
| GATGGGTTCAAGACCAGAGG+CGG | 0.648096 | 4_2:-6688854 | Msa0585630:CDS |
| TCTTAGATGAGGGTTGTGAG+AGG | 0.653129 | 4_2:+6687145 | None:intergenic |
| CAAGAAGTACCCTTGCCCGA+AGG | 0.653794 | 4_2:-6685228 | Msa0585630:CDS |
| CGGGATGGGTTCAAGACCAG+AGG | 0.654002 | 4_2:-6688857 | None:intergenic |
| CCTCCAGATACCAAGTACAC+TGG | 0.661149 | 4_2:-6684660 | Msa0585630:CDS |
| CCAGTGTACTTGGTATCTGG+AGG | 0.664844 | 4_2:+6684660 | None:intergenic |
| CTGAATGGCAGATATACCGA+TGG | 0.676516 | 4_2:+6687460 | None:intergenic |
| GGTGAGGTAATCACAGAGAG+TGG | 0.681616 | 4_2:-6688372 | Msa0585630:CDS |
| TTTACGACGATGATACAGCA+CGG | 0.708740 | 4_2:-6688813 | Msa0585630:CDS |
| AATGAAAGCTGGATTTACTG+GGG | 0.727081 | 4_2:-6686898 | Msa0585630:CDS |
| TGGATCGGGACTTAGCGGTG+AGG | 0.729748 | 4_2:-6688388 | Msa0585630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAGAATAATTTTACTATT+TGG | - | chr4_2:6686463-6686482 | Msa0585630:intron | 10.0% |
| !!! | AAAGAATAATTTTACTATTT+GGG | - | chr4_2:6686464-6686483 | Msa0585630:intron | 10.0% |
| !!! | TTTAAGTTATTTAATTGTAT+CGG | - | chr4_2:6688813-6688832 | Msa0585630:CDS | 10.0% |
| !!! | ATAACTTTAAAAAAAATCAT+CGG | - | chr4_2:6688851-6688870 | Msa0585630:CDS | 10.0% |
| !! | TTATATTAGTGTTTATGTAT+AGG | - | chr4_2:6685155-6685174 | Msa0585630:intron | 15.0% |
| !! | TAATAGAAATAAGCTAAATT+TGG | - | chr4_2:6685261-6685280 | Msa0585630:CDS | 15.0% |
| !! | ACTAATGTTTATCAATAAAA+TGG | + | chr4_2:6685438-6685457 | None:intergenic | 15.0% |
| !!! | TAGCATATTATTTTTATCAA+GGG | + | chr4_2:6685486-6685505 | None:intergenic | 15.0% |
| !! | AAATATAGTAGTTTAAATGA+AGG | - | chr4_2:6685567-6685586 | Msa0585630:intron | 15.0% |
| !! | AAATGAAGGATAAATATAAT+TGG | - | chr4_2:6685581-6685600 | Msa0585630:intron | 15.0% |
| !! | TATAACCTAAATATATAAAG+GGG | + | chr4_2:6685634-6685653 | None:intergenic | 15.0% |
| !! | CTATAACCTAAATATATAAA+GGG | + | chr4_2:6685635-6685654 | None:intergenic | 15.0% |
| !! | TCTATAACCTAAATATATAA+AGG | + | chr4_2:6685636-6685655 | None:intergenic | 15.0% |
| !! | GTCAAAAAAAAAAAAAATCA+GGG | + | chr4_2:6686010-6686029 | None:intergenic | 15.0% |
| !! | AGTCAAAAAAAAAAAAAATC+AGG | + | chr4_2:6686011-6686030 | None:intergenic | 15.0% |
| !!! | AAAAAAAAGTATGATAGATA+AGG | + | chr4_2:6686107-6686126 | None:intergenic | 15.0% |
| !! | CAAATTAAGAAATGTAATAA+CGG | - | chr4_2:6686666-6686685 | Msa0585630:intron | 15.0% |
| !!! | ATATTTTTTATATTGGTGTA+AGG | - | chr4_2:6686820-6686839 | Msa0585630:intron | 15.0% |
| !!! | TATTTTTTATATTGGTGTAA+GGG | - | chr4_2:6686821-6686840 | Msa0585630:intron | 15.0% |
| !! | AAATATAATAAGAACGAAAA+GGG | - | chr4_2:6688471-6688490 | Msa0585630:intron | 15.0% |
| !! | AATTTAATTGTTACATTTCA+TGG | - | chr4_2:6688705-6688724 | Msa0585630:intron | 15.0% |
| !!! | TAACTTTAAAAAAAATCATC+GGG | - | chr4_2:6688852-6688871 | Msa0585630:CDS | 15.0% |
| !! | GTTTATCAATAAAATGGAAA+AGG | + | chr4_2:6685432-6685451 | None:intergenic | 20.0% |
| !!! | ATATTATTTTTATCAAGGGA+TGG | + | chr4_2:6685482-6685501 | None:intergenic | 20.0% |
| !!! | GTAGCATATTATTTTTATCA+AGG | + | chr4_2:6685487-6685506 | None:intergenic | 20.0% |
| !! | AATATCCCCTTTATATATTT+AGG | - | chr4_2:6685626-6685645 | Msa0585630:intron | 20.0% |
| !! | AAACTACAAAAATTAATGCA+TGG | - | chr4_2:6685798-6685817 | Msa0585630:intron | 20.0% |
| !! | TTAATTGAGTTTCATTTCAT+CGG | + | chr4_2:6685855-6685874 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTGTTCCTTTGTA+GGG | - | chr4_2:6686185-6686204 | Msa0585630:intron | 20.0% |
| !! | ACTATATAGTATTAGAAAAC+AGG | - | chr4_2:6686733-6686752 | Msa0585630:intron | 20.0% |
| !! | CTATATAGTATTAGAAAACA+GGG | - | chr4_2:6686734-6686753 | Msa0585630:intron | 20.0% |
| !! | TAAAGATAGTTGTAAAGAAT+AGG | + | chr4_2:6687423-6687442 | None:intergenic | 20.0% |
| !!! | ACAACTATCTTTAATTTAAG+TGG | - | chr4_2:6687430-6687449 | Msa0585630:intron | 20.0% |
| !!! | TTAAAAGGTGTTACTTTTTT+TGG | + | chr4_2:6687470-6687489 | None:intergenic | 20.0% |
| !! | AACACAAAACTTTATAAAAG+GGG | + | chr4_2:6687499-6687518 | None:intergenic | 20.0% |
| !! | CAACACAAAACTTTATAAAA+GGG | + | chr4_2:6687500-6687519 | None:intergenic | 20.0% |
| !! | ACAACACAAAACTTTATAAA+AGG | + | chr4_2:6687501-6687520 | None:intergenic | 20.0% |
| !! | GAAATATAATAAGAACGAAA+AGG | - | chr4_2:6688470-6688489 | Msa0585630:intron | 20.0% |
| !! | GTTTGTATACTAATATTCTA+TGG | - | chr4_2:6688767-6688786 | Msa0585630:intron | 20.0% |
| ! | AAACCTGAATTTCAATGTTA+CGG | + | chr4_2:6684439-6684458 | None:intergenic | 25.0% |
| ! | TAAAAAGAAGAAGAAGAAGA+GGG | + | chr4_2:6684463-6684482 | None:intergenic | 25.0% |
| ! | TTAAAAAGAAGAAGAAGAAG+AGG | + | chr4_2:6684464-6684483 | None:intergenic | 25.0% |
| ! | AAACACAACAAATCAGAAAT+CGG | + | chr4_2:6684504-6684523 | None:intergenic | 25.0% |
| !!! | GTTAGCTTAGTTGTTTTTAT+CGG | - | chr4_2:6684625-6684644 | Msa0585630:exon | 25.0% |
| !!! | TGTGAATGTTTGTTTTGTTT+AGG | - | chr4_2:6684795-6684814 | Msa0585630:intron | 25.0% |
| !!! | CTTATTTCTATTAGTTCTCA+AGG | + | chr4_2:6685254-6685273 | None:intergenic | 25.0% |
| !! | TTGTTGTTATGCTCTAATAA+AGG | - | chr4_2:6685396-6685415 | Msa0585630:intron | 25.0% |
| ! | GTATTTGATCAAGTAAACAA+TGG | - | chr4_2:6685535-6685554 | Msa0585630:intron | 25.0% |
| !! | ATAAAGGGGATATTAAGTTT+TGG | + | chr4_2:6685620-6685639 | None:intergenic | 25.0% |
| !! | ACTACTTTATCTTTGATTTC+AGG | - | chr4_2:6685693-6685712 | Msa0585630:intron | 25.0% |
| !! | CTACTTTATCTTTGATTTCA+GGG | - | chr4_2:6685694-6685713 | Msa0585630:intron | 25.0% |
| ! | TGAGTATATTCTTCTTAACA+CGG | + | chr4_2:6685827-6685846 | None:intergenic | 25.0% |
| !!! | CTTTTTTTTTGTTCCTTTGT+AGG | - | chr4_2:6686184-6686203 | Msa0585630:intron | 25.0% |
| ! | ATTTGTCAAGCATTTGTATA+AGG | + | chr4_2:6686223-6686242 | None:intergenic | 25.0% |
| ! | TTATACAAATGCTTGACAAA+TGG | - | chr4_2:6686222-6686241 | Msa0585630:intron | 25.0% |
| ! | ATTACTCTTGATGAAACAAA+TGG | + | chr4_2:6686383-6686402 | None:intergenic | 25.0% |
| !! | TAATTTTACTATTTGGGCTT+AGG | - | chr4_2:6686470-6686489 | Msa0585630:intron | 25.0% |
| !! | AATTTTACTATTTGGGCTTA+GGG | - | chr4_2:6686471-6686490 | Msa0585630:intron | 25.0% |
| ! | AAAGCTAGTAGCAAATAAAT+AGG | + | chr4_2:6687359-6687378 | None:intergenic | 25.0% |
| !!! | ACTAGCTTTTTCCTAAAAAA+AGG | - | chr4_2:6687370-6687389 | Msa0585630:intron | 25.0% |
| !!! | CTAGCTTTTTCCTAAAAAAA+GGG | - | chr4_2:6687371-6687390 | Msa0585630:intron | 25.0% |
| ! | TTTCCTAAAAAAAGGGATAA+TGG | - | chr4_2:6687378-6687397 | Msa0585630:intron | 25.0% |
| ! | TTCCTAAAAAAAGGGATAAT+GGG | - | chr4_2:6687379-6687398 | Msa0585630:intron | 25.0% |
| ! | TAAAAGGGGAAACAATTAAA+AGG | + | chr4_2:6687485-6687504 | None:intergenic | 25.0% |
| !!! | TTTTTCTTTTTCACCAACTA+TGG | - | chr4_2:6687896-6687915 | Msa0585630:intron | 25.0% |
| ! | TGTGTATTTGATTCATATTC+AGG | - | chr4_2:6688070-6688089 | Msa0585630:intron | 25.0% |
| ! | TTCTTCATAAAGTATGACTT+TGG | - | chr4_2:6688131-6688150 | Msa0585630:intron | 25.0% |
| ! | ATGCACATGTATTAAAATCA+TGG | - | chr4_2:6688305-6688324 | Msa0585630:intron | 25.0% |
| !! | TTATATTTCTGTTTCTTCCA+AGG | + | chr4_2:6688459-6688478 | None:intergenic | 25.0% |
| AACCTGAATTTCAATGTTAC+GGG | + | chr4_2:6684438-6684457 | None:intergenic | 30.0% | |
| GAAATAACATACCAATGTCA+AGG | + | chr4_2:6684599-6684618 | None:intergenic | 30.0% | |
| !!! | TGTTTGTTTTGTTTAGGTTG+TGG | - | chr4_2:6684801-6684820 | Msa0585630:intron | 30.0% |
| !! | TTAACTTGTAGATATCGCAT+TGG | - | chr4_2:6684993-6685012 | Msa0585630:intron | 30.0% |
| ! | GTTGTCAATCATAGATTTTG+TGG | - | chr4_2:6685090-6685109 | Msa0585630:intron | 30.0% |
| ! | ATAACAACAAAGCATTTGGT+TGG | + | chr4_2:6685386-6685405 | None:intergenic | 30.0% |
| ! | TATCTTTGATTTCAGGGTTT+AGG | - | chr4_2:6685700-6685719 | Msa0585630:intron | 30.0% |
| ! | ATCTTTGATTTCAGGGTTTA+GGG | - | chr4_2:6685701-6685720 | Msa0585630:intron | 30.0% |
| !!! | TTCGTTTTGGAATGTTTGAT+GGG | - | chr4_2:6685725-6685744 | Msa0585630:intron | 30.0% |
| ! | TTATCTAAAGCAAACCTGAA+TGG | + | chr4_2:6685767-6685786 | None:intergenic | 30.0% |
| ACATGTAAACCAAGAAAACT+TGG | + | chr4_2:6685976-6685995 | None:intergenic | 30.0% | |
| !!! | TTTTTGACTTGATAATGCAG+TGG | - | chr4_2:6686022-6686041 | Msa0585630:intron | 30.0% |
| CATACTTCAATCTTAGATGA+GGG | + | chr4_2:6686077-6686096 | None:intergenic | 30.0% | |
| TCCAATGTATGTAAAGCATA+TGG | - | chr4_2:6686128-6686147 | Msa0585630:intron | 30.0% | |
| TCCATATGCTTTACATACAT+TGG | + | chr4_2:6686132-6686151 | None:intergenic | 30.0% | |
| AAAAAAGTTGTAAAGAAGCG+AGG | + | chr4_2:6686171-6686190 | None:intergenic | 30.0% | |
| ATGTAAAAAAAGCCCTACAA+AGG | + | chr4_2:6686200-6686219 | None:intergenic | 30.0% | |
| CAAAAAAAAACAGTGATAGG+CGG | + | chr4_2:6686540-6686559 | None:intergenic | 30.0% | |
| GAGCAAAAAAAAACAGTGAT+AGG | + | chr4_2:6686543-6686562 | None:intergenic | 30.0% | |
| TGCAAATACTTTAGCGATAT+GGG | + | chr4_2:6686602-6686621 | None:intergenic | 30.0% | |
| ! | CCTTAAACGACATTTTGAAT+CGG | + | chr4_2:6686636-6686655 | None:intergenic | 30.0% |
| ! | CTTGACAAACAAAAGTTTTG+TGG | - | chr4_2:6687634-6687653 | Msa0585630:intron | 30.0% |
| ATGATATATGTTGACAGTCT+CGG | + | chr4_2:6687847-6687866 | None:intergenic | 30.0% | |
| ! | AGATACTCTTTTCTCTTCTT+AGG | + | chr4_2:6687945-6687964 | None:intergenic | 30.0% |
| TGAATCAAATACACAGATGT+GGG | + | chr4_2:6688065-6688084 | None:intergenic | 30.0% | |
| ATGAATCAAATACACAGATG+TGG | + | chr4_2:6688066-6688085 | None:intergenic | 30.0% | |
| ! | TAGAAGCATAAATCAATACC+AGG | + | chr4_2:6688167-6688186 | None:intergenic | 30.0% |
| GCTATAACCAATTTATGAAC+AGG | + | chr4_2:6688205-6688224 | None:intergenic | 30.0% | |
| TAAGATCTCTCTATCATTGA+TGG | - | chr4_2:6688261-6688280 | Msa0585630:intron | 30.0% | |
| CTTGCGAAAAATGTTAAAAG+AGG | + | chr4_2:6688368-6688387 | None:intergenic | 30.0% | |
| TGAACAAACAAAAATACTGC+AGG | - | chr4_2:6688410-6688429 | Msa0585630:intron | 30.0% | |
| ! | TTTTAGACAGAAATAGACCT+TGG | - | chr4_2:6688439-6688458 | Msa0585630:intron | 30.0% |
| ATAATAAGAACGAAAAGGGA+AGG | - | chr4_2:6688475-6688494 | Msa0585630:intron | 30.0% | |
| TAATAAGAACGAAAAGGGAA+GGG | - | chr4_2:6688476-6688495 | Msa0585630:intron | 30.0% | |
| GCAAGAAATGTTCAACATTA+AGG | + | chr4_2:6688616-6688635 | None:intergenic | 30.0% | |
| !!! | TTTCATGGCTTTTTTGTGTT+AGG | - | chr4_2:6688720-6688739 | Msa0585630:intron | 30.0% |
| TCATCGTCGTAAAATATCTC+CGG | + | chr4_2:6684389-6684408 | None:intergenic | 35.0% | |
| TTCAATGTTACGGGAATTAG+AGG | + | chr4_2:6684429-6684448 | None:intergenic | 35.0% | |
| TTCCCGTAACATTGAAATTC+AGG | - | chr4_2:6684433-6684452 | Msa0585630:three_prime_UTR | 35.0% | |
| CTTCTCAATTTACCCAATGA+CGG | - | chr4_2:6684558-6684577 | Msa0585630:three_prime_UTR | 35.0% | |
| !!! | GTTTTGTTTAGGTTGTGGAT+CGG | - | chr4_2:6684806-6684825 | Msa0585630:intron | 35.0% |
| !!! | TTTTGTTTAGGTTGTGGATC+GGG | - | chr4_2:6684807-6684826 | Msa0585630:intron | 35.0% |
| !! | GACAACAATTTGCTGAAATC+AGG | + | chr4_2:6685076-6685095 | None:intergenic | 35.0% |
| TGTGGAAAATAGCAGTTTGT+AGG | - | chr4_2:6685108-6685127 | Msa0585630:intron | 35.0% | |
| GTAGGAATTCTGTTATGCTA+TGG | - | chr4_2:6685126-6685145 | Msa0585630:intron | 35.0% | |
| ! | GAGCATAACAACAAAGCATT+TGG | + | chr4_2:6685390-6685409 | None:intergenic | 35.0% |
| ! | ATTTTTATCAAGGGATGGAC+AGG | + | chr4_2:6685477-6685496 | None:intergenic | 35.0% |
| !!! | CTTCGTTTTGGAATGTTTGA+TGG | - | chr4_2:6685724-6685743 | Msa0585630:intron | 35.0% |
| !!! | TCGTTTTGGAATGTTTGATG+GGG | - | chr4_2:6685726-6685745 | Msa0585630:intron | 35.0% |
| ACTTATCCCAGATCAAAATG+GGG | + | chr4_2:6685941-6685960 | None:intergenic | 35.0% | |
| GACTTATCCCAGATCAAAAT+GGG | + | chr4_2:6685942-6685961 | None:intergenic | 35.0% | |
| TGACTTATCCCAGATCAAAA+TGG | + | chr4_2:6685943-6685962 | None:intergenic | 35.0% | |
| CCAAGAAAACTTGGTAGAAA+AGG | + | chr4_2:6685967-6685986 | None:intergenic | 35.0% | |
| ! | CCTTTTCTACCAAGTTTTCT+TGG | - | chr4_2:6685964-6685983 | Msa0585630:intron | 35.0% |
| GCATACTTCAATCTTAGATG+AGG | + | chr4_2:6686078-6686097 | None:intergenic | 35.0% | |
| ! | AGCAGTATTTCAAGTGTATC+CGG | - | chr4_2:6686251-6686270 | Msa0585630:intron | 35.0% |
| CAATGAAAGCTGGATTTACT+GGG | - | chr4_2:6686310-6686329 | Msa0585630:intron | 35.0% | |
| AATGAAAGCTGGATTTACTG+GGG | - | chr4_2:6686311-6686330 | Msa0585630:intron | 35.0% | |
| ATTCTTGTGAGAACTGATGA+AGG | - | chr4_2:6686567-6686586 | Msa0585630:intron | 35.0% | |
| GTGCAAATACTTTAGCGATA+TGG | + | chr4_2:6686603-6686622 | None:intergenic | 35.0% | |
| ! | AACGACATTTTGAATCGGTA+TGG | + | chr4_2:6686631-6686650 | None:intergenic | 35.0% |
| ! | CCGATTCAAAATGTCGTTTA+AGG | - | chr4_2:6686633-6686652 | Msa0585630:intron | 35.0% |
| AAGAAAACTAGGCTAAGAGT+GGG | + | chr4_2:6687148-6687167 | None:intergenic | 35.0% | |
| TTGGGTTCTGTTTAGAAGTT+AGG | - | chr4_2:6687211-6687230 | Msa0585630:intron | 35.0% | |
| TGGGTTCTGTTTAGAAGTTA+GGG | - | chr4_2:6687212-6687231 | Msa0585630:intron | 35.0% | |
| !!! | AGCCCATTATCCCTTTTTTT+AGG | + | chr4_2:6687384-6687403 | None:intergenic | 35.0% |
| !! | TAAAAAAAGGGATAATGGGC+TGG | - | chr4_2:6687383-6687402 | Msa0585630:intron | 35.0% |
| !! | AAAAAAAGGGATAATGGGCT+GGG | - | chr4_2:6687384-6687403 | Msa0585630:intron | 35.0% |
| !!! | CTTTTTTTGGTCAACTGAAC+AGG | + | chr4_2:6687457-6687476 | None:intergenic | 35.0% |
| !! | CTTTTAAGTGTGGAGAATCT+GGG | + | chr4_2:6687590-6687609 | None:intergenic | 35.0% |
| !! | ACTTTTAAGTGTGGAGAATC+TGG | + | chr4_2:6687591-6687610 | None:intergenic | 35.0% |
| !! | GATTCACACACTTTTAAGTG+TGG | + | chr4_2:6687600-6687619 | None:intergenic | 35.0% |
| GACAACAATTGTTCCATAGT+TGG | + | chr4_2:6687912-6687931 | None:intergenic | 35.0% | |
| ! | GAGTATCTTTTTCTCGTATG+TGG | - | chr4_2:6687957-6687976 | Msa0585630:intron | 35.0% |
| AATCAAATACACAGATGTGG+GGG | + | chr4_2:6688063-6688082 | None:intergenic | 35.0% | |
| GAATCAAATACACAGATGTG+GGG | + | chr4_2:6688064-6688083 | None:intergenic | 35.0% | |
| TTGAACATTTCTTGCGTTTC+TGG | - | chr4_2:6688621-6688640 | Msa0585630:intron | 35.0% | |
| CTTGCAACATATTTGACTGA+TGG | + | chr4_2:6688673-6688692 | None:intergenic | 35.0% | |
| !!! | GGCTTTTTTGTGTTAGGTAA+TGG | - | chr4_2:6688726-6688745 | Msa0585630:intron | 35.0% |
| TTTACGACGATGATACAGCA+CGG | - | chr4_2:6684396-6684415 | Msa0585630:three_prime_UTR | 40.0% | |
| AACTTAGGAACACCGTCATT+GGG | + | chr4_2:6684573-6684592 | None:intergenic | 40.0% | |
| TAACTTAGGAACACCGTCAT+TGG | + | chr4_2:6684574-6684593 | None:intergenic | 40.0% | |
| CCAATGTCAAGGAGTAACTT+AGG | + | chr4_2:6684588-6684607 | None:intergenic | 40.0% | |
| CCTAAGTTACTCCTTGACAT+TGG | - | chr4_2:6684585-6684604 | Msa0585630:three_prime_UTR | 40.0% | |
| ! | TTTTTATCGGTCACAGACAC+CGG | - | chr4_2:6684638-6684657 | Msa0585630:CDS | 40.0% |
| CATATGTGTGAGTGTCCTAT+CGG | - | chr4_2:6684697-6684716 | Msa0585630:CDS | 40.0% | |
| ATGGACATGTGGCAATCATA+AGG | - | chr4_2:6684722-6684741 | Msa0585630:CDS | 40.0% | |
| TGGACATGTGGCAATCATAA+GGG | - | chr4_2:6684723-6684742 | Msa0585630:CDS | 40.0% | |
| !! | ACTAGCATACCAAGCATTGA+GGG | + | chr4_2:6684891-6684910 | None:intergenic | 40.0% |
| ! | TACTAGCATACCAAGCATTG+AGG | + | chr4_2:6684892-6684911 | None:intergenic | 40.0% |
| TAAGTGCTTGTGAGACTGTT+TGG | + | chr4_2:6685334-6685353 | None:intergenic | 40.0% | |
| !! | CAACATCCCCATTTTGATCT+GGG | - | chr4_2:6685932-6685951 | Msa0585630:intron | 40.0% |
| ! | ACACGTTGATCATCGTTTTC+CGG | + | chr4_2:6686273-6686292 | None:intergenic | 40.0% |
| GTAAATCCAGCTTTCATTGC+AGG | + | chr4_2:6686309-6686328 | None:intergenic | 40.0% | |
| GCAATGAAAGCTGGATTTAC+TGG | - | chr4_2:6686309-6686328 | Msa0585630:intron | 40.0% | |
| TGGATTTACTGGGGATATAG+TGG | - | chr4_2:6686320-6686339 | Msa0585630:intron | 40.0% | |
| ATTTACTGGGGATATAGTGG+TGG | - | chr4_2:6686323-6686342 | Msa0585630:intron | 40.0% | |
| !! | GGGATATAGTGGTGGATTAT+CGG | - | chr4_2:6686331-6686350 | Msa0585630:intron | 40.0% |
| !! | GGATATAGTGGTGGATTATC+GGG | - | chr4_2:6686332-6686351 | Msa0585630:intron | 40.0% |
| !! | AAAGAGTGCCTATAAGCCAT+GGG | + | chr4_2:6686515-6686534 | None:intergenic | 40.0% |
| TGCTATTGACAGCATAGATC+GGG | + | chr4_2:6686877-6686896 | None:intergenic | 40.0% | |
| CTGCTATTGACAGCATAGAT+CGG | + | chr4_2:6686878-6686897 | None:intergenic | 40.0% | |
| TTGACAAAGGTAGAGGTTGA+TGG | + | chr4_2:6687112-6687131 | None:intergenic | 40.0% | |
| CAAGAAAACTAGGCTAAGAG+TGG | + | chr4_2:6687149-6687168 | None:intergenic | 40.0% | |
| !! | TCTTAGCCTAGTTTTCTTGC+AGG | - | chr4_2:6687150-6687169 | Msa0585630:CDS | 40.0% |
| !! | CTTAGCCTAGTTTTCTTGCA+GGG | - | chr4_2:6687151-6687170 | Msa0585630:CDS | 40.0% |
| AAAAGCCCTGCAAGAAAACT+AGG | + | chr4_2:6687159-6687178 | None:intergenic | 40.0% | |
| !! | AGGGCTTTTCTTTAGCTCAA+GGG | - | chr4_2:6687170-6687189 | Msa0585630:CDS | 40.0% |
| !! | TCTTTAGCTCAAGGGTTTTC+TGG | - | chr4_2:6687178-6687197 | Msa0585630:intron | 40.0% |
| !! | TTTTCTGGCAGTTGGGTTTT+GGG | - | chr4_2:6687193-6687212 | Msa0585630:intron | 40.0% |
| GTCTGTAAGTGTAGATCAGT+TGG | - | chr4_2:6687523-6687542 | Msa0585630:intron | 40.0% | |
| AGTGTGTGAATCTAACCACT+AGG | - | chr4_2:6687608-6687627 | Msa0585630:intron | 40.0% | |
| TTGTTTGTCAAGTAGCCTAG+TGG | + | chr4_2:6687626-6687645 | None:intergenic | 40.0% | |
| ! | TCGTCTTCAGTTTTACCTTC+GGG | + | chr4_2:6687999-6688018 | None:intergenic | 40.0% |
| ! | GTCGTCTTCAGTTTTACCTT+CGG | + | chr4_2:6688000-6688019 | None:intergenic | 40.0% |
| ATCAAATACACAGATGTGGG+GGG | + | chr4_2:6688062-6688081 | None:intergenic | 40.0% | |
| CCAATTTATGAACAGGTGCT+TGG | + | chr4_2:6688198-6688217 | None:intergenic | 40.0% | |
| CCAAGCACCTGTTCATAAAT+TGG | - | chr4_2:6688195-6688214 | Msa0585630:CDS | 40.0% | |
| GGAATGGATAAAGAGGAAGA+AGG | - | chr4_2:6688497-6688516 | Msa0585630:intron | 40.0% | |
| ! | GCACGAGATGCAATTTTCAA+TGG | + | chr4_2:6688647-6688666 | None:intergenic | 40.0% |
| ! | GTTAGGTAATGGTCATGTAG+CGG | - | chr4_2:6688737-6688756 | Msa0585630:intron | 40.0% |
| ! | GACAGAATACATCTAGCTTG+TGG | - | chr4_2:6688789-6688808 | Msa0585630:CDS | 40.0% |
| TCGTCGTAAAATATCTCCGG+TGG | + | chr4_2:6684386-6684405 | None:intergenic | 45.0% | |
| CATGTGGCAATCATAAGGGT+CGG | - | chr4_2:6684727-6684746 | Msa0585630:CDS | 45.0% | |
| ATCATAAGGGTCGGTGATTC+AGG | - | chr4_2:6684736-6684755 | Msa0585630:CDS | 45.0% | |
| TCATAAGGGTCGGTGATTCA+GGG | - | chr4_2:6684737-6684756 | Msa0585630:CDS | 45.0% | |
| !! | GACCTTTTACTCGGTGACAT+GGG | - | chr4_2:6685033-6685052 | Msa0585630:intron | 45.0% |
| CTGAATGGCAGATATACCGA+TGG | + | chr4_2:6685752-6685771 | None:intergenic | 45.0% | |
| CATCGGTATATCTGCCATTC+AGG | - | chr4_2:6685750-6685769 | Msa0585630:intron | 45.0% | |
| CCAGATCAAAATGGGGATGT+TGG | + | chr4_2:6685934-6685953 | None:intergenic | 45.0% | |
| !! | CCAACATCCCCATTTTGATC+TGG | - | chr4_2:6685931-6685950 | Msa0585630:intron | 45.0% |
| TCTTAGATGAGGGTTGTGAG+AGG | + | chr4_2:6686067-6686086 | None:intergenic | 45.0% | |
| TTGAGTCCTGCAATGAAAGC+TGG | - | chr4_2:6686300-6686319 | Msa0585630:intron | 45.0% | |
| GAGGATTTCCCATGGCTTAT+AGG | - | chr4_2:6686504-6686523 | Msa0585630:intron | 45.0% | |
| !! | CAAAGAGTGCCTATAAGCCA+TGG | + | chr4_2:6686516-6686535 | None:intergenic | 45.0% |
| TATGCTGTCAATAGCAGCTG+TGG | - | chr4_2:6686881-6686900 | Msa0585630:CDS | 45.0% | |
| ATGCTGTCAATAGCAGCTGT+GGG | - | chr4_2:6686882-6686901 | Msa0585630:CDS | 45.0% | |
| ! | AATTTGTTCTCCTCGTTCCC+TGG | - | chr4_2:6687049-6687068 | Msa0585630:intron | 45.0% |
| !! | ACAAAGGTAGAGGTTGATGG+CGG | + | chr4_2:6687109-6687128 | None:intergenic | 45.0% |
| !! | CAGGGCTTTTCTTTAGCTCA+AGG | - | chr4_2:6687169-6687188 | Msa0585630:CDS | 45.0% |
| !! | TCAAGGGTTTTCTGGCAGTT+GGG | - | chr4_2:6687186-6687205 | Msa0585630:intron | 45.0% |
| !! | GTTTTCTGGCAGTTGGGTTT+TGG | - | chr4_2:6687192-6687211 | Msa0585630:intron | 45.0% |
| ACCCTTCTGGTAGCTAATGA+GGG | - | chr4_2:6687316-6687335 | Msa0585630:intron | 45.0% | |
| TCCCTCATTAGCTACCAGAA+GGG | + | chr4_2:6687320-6687339 | None:intergenic | 45.0% | |
| !! | TAGATCAGTTGGTAGCTACC+AGG | - | chr4_2:6687534-6687553 | Msa0585630:intron | 45.0% |
| !! | AGATCAGTTGGTAGCTACCA+GGG | - | chr4_2:6687535-6687554 | Msa0585630:intron | 45.0% |
| TACCAGGGACATCAGTTGTA+GGG | - | chr4_2:6687550-6687569 | Msa0585630:intron | 45.0% | |
| ATGTTGACAGTCTCGGATAG+AGG | + | chr4_2:6687840-6687859 | None:intergenic | 45.0% | |
| ! | TCAGTTTTACCTTCGGGCAA+GGG | + | chr4_2:6687993-6688012 | None:intergenic | 45.0% |
| ! | TTCAGTTTTACCTTCGGGCA+AGG | + | chr4_2:6687994-6688013 | None:intergenic | 45.0% |
| ! | ATGAACAGGTGCTTGGTGAT+GGG | + | chr4_2:6688191-6688210 | None:intergenic | 45.0% |
| ! | TATGAACAGGTGCTTGGTGA+TGG | + | chr4_2:6688192-6688211 | None:intergenic | 45.0% |
| AGAACGAAAAGGGAAGGGAA+TGG | - | chr4_2:6688481-6688500 | Msa0585630:intron | 45.0% | |
| AGGGAAGGGAATGGATAAAG+AGG | - | chr4_2:6688490-6688509 | Msa0585630:intron | 45.0% | |
| AAGGAGCAGATGAGAAGAAG+AGG | - | chr4_2:6688516-6688535 | Msa0585630:intron | 45.0% | |
| CAGATACCAAGTACACTGGT+CGG | - | chr4_2:6688553-6688572 | Msa0585630:intron | 45.0% | |
| !!! | AAGTAATATATTTTTTATAT+TGG | - | chr4_2:6686813-6686832 | Msa0585630:intron | 5.0% |
| !! | ATTAAATATTAATAAAATAG+TGG | - | chr4_2:6687809-6687828 | Msa0585630:intron | 5.0% |
| TTCAATGACTGAGCGAGCAC+TGG | - | chr4_2:6684533-6684552 | Msa0585630:three_prime_UTR | 50.0% | |
| CAATGTGTCAGTGTCGTGTC+CGG | + | chr4_2:6684660-6684679 | None:intergenic | 50.0% | |
| TGTGAGTGTCCTATCGGACA+TGG | - | chr4_2:6684703-6684722 | Msa0585630:CDS | 50.0% | |
| TCCTATCGGACATGGACATG+TGG | - | chr4_2:6684711-6684730 | Msa0585630:CDS | 50.0% | |
| GGTGAGGTAATCACAGAGAG+TGG | - | chr4_2:6684837-6684856 | Msa0585630:intron | 50.0% | |
| TCACAGAGAGTGGACACCAT+TGG | - | chr4_2:6684847-6684866 | Msa0585630:intron | 50.0% | |
| CACAGAGAGTGGACACCATT+GGG | - | chr4_2:6684848-6684867 | Msa0585630:intron | 50.0% | |
| CAATGTCGAGACCAACCCAA+TGG | + | chr4_2:6684866-6684885 | None:intergenic | 50.0% | |
| GACATTGCACCCTCAATGCT+TGG | - | chr4_2:6684879-6684898 | Msa0585630:intron | 50.0% | |
| AGATATCGCATTGGAGCGTG+AGG | - | chr4_2:6685002-6685021 | Msa0585630:intron | 50.0% | |
| ! | GTTGAGGGCGACCTTTTACT+CGG | - | chr4_2:6685024-6685043 | Msa0585630:intron | 50.0% |
| !! | CGACCTTTTACTCGGTGACA+TGG | - | chr4_2:6685032-6685051 | Msa0585630:intron | 50.0% |
| GACCCATGTCACCGAGTAAA+AGG | + | chr4_2:6685038-6685057 | None:intergenic | 50.0% | |
| ! | TTTACTCGGTGACATGGGTC+AGG | - | chr4_2:6685038-6685057 | Msa0585630:intron | 50.0% |
| !! | CAGGGTTTAGGGCTTCGTTT+TGG | - | chr4_2:6685712-6685731 | Msa0585630:intron | 50.0% |
| GGAATGTTTGATGGGGCCAT+CGG | - | chr4_2:6685733-6685752 | Msa0585630:intron | 50.0% | |
| !! | TAGTGGTGGATTATCGGGAC+AGG | - | chr4_2:6686337-6686356 | Msa0585630:intron | 50.0% |
| TTTGGGCTTAGGGCCTAACT+CGG | - | chr4_2:6686481-6686500 | Msa0585630:intron | 50.0% | |
| ATGGGAAATCCTCCCGAGTT+AGG | + | chr4_2:6686497-6686516 | None:intergenic | 50.0% | |
| TAACTCGGGAGGATTTCCCA+TGG | - | chr4_2:6686496-6686515 | Msa0585630:intron | 50.0% | |
| GTTGAAACTCTCTTCTGCGC+AGG | + | chr4_2:6686979-6686998 | None:intergenic | 50.0% | |
| ACGGAGGTTGACAAAGGTAG+AGG | + | chr4_2:6687119-6687138 | None:intergenic | 50.0% | |
| ACTAGGCTAAGAGTGGGTCT+GGG | + | chr4_2:6687142-6687161 | None:intergenic | 50.0% | |
| AACTAGGCTAAGAGTGGGTC+TGG | + | chr4_2:6687143-6687162 | None:intergenic | 50.0% | |
| !! | CTCAAGGGTTTTCTGGCAGT+TGG | - | chr4_2:6687185-6687204 | Msa0585630:intron | 50.0% |
| TCCACCCCTTGTATTCTCTG+AGG | - | chr4_2:6687268-6687287 | Msa0585630:intron | 50.0% | |
| CCACCCCTTGTATTCTCTGA+GGG | - | chr4_2:6687269-6687288 | Msa0585630:intron | 50.0% | |
| !! | CTTCCGGTGCTGTATATGAG+GGG | + | chr4_2:6687295-6687314 | None:intergenic | 50.0% |
| !! | CCTTCCGGTGCTGTATATGA+GGG | + | chr4_2:6687296-6687315 | None:intergenic | 50.0% |
| !! | TCCTTCCGGTGCTGTATATG+AGG | + | chr4_2:6687297-6687316 | None:intergenic | 50.0% |
| GACCCTTCTGGTAGCTAATG+AGG | - | chr4_2:6687315-6687334 | Msa0585630:intron | 50.0% | |
| GTCCCTCATTAGCTACCAGA+AGG | + | chr4_2:6687321-6687340 | None:intergenic | 50.0% | |
| CTACCAGGGACATCAGTTGT+AGG | - | chr4_2:6687549-6687568 | Msa0585630:intron | 50.0% | |
| ACCAGGGACATCAGTTGTAG+GGG | - | chr4_2:6687551-6687570 | Msa0585630:intron | 50.0% | |
| ! | GACTTTGGTCACAAAGCACC+TGG | - | chr4_2:6688146-6688165 | Msa0585630:intron | 50.0% |
| CCAGTGTACTTGGTATCTGG+AGG | + | chr4_2:6688552-6688571 | None:intergenic | 50.0% | |
| CCTCCAGATACCAAGTACAC+TGG | - | chr4_2:6688549-6688568 | Msa0585630:intron | 50.0% | |
| CGACCAGTGTACTTGGTATC+TGG | + | chr4_2:6688555-6688574 | None:intergenic | 50.0% | |
| CCAAGTACACTGGTCGGAAA+CGG | - | chr4_2:6688559-6688578 | Msa0585630:intron | 50.0% | |
| GCCACATGTCCATGTCCGAT+AGG | + | chr4_2:6684715-6684734 | None:intergenic | 55.0% | |
| GGTTGTGGATCGGGACTTAG+CGG | - | chr4_2:6684816-6684835 | Msa0585630:intron | 55.0% | |
| GAGAGTGGACACCATTGGGT+TGG | - | chr4_2:6684852-6684871 | Msa0585630:intron | 55.0% | |
| GCATTGGAGCGTGAGGTTGA+GGG | - | chr4_2:6685009-6685028 | Msa0585630:intron | 55.0% | |
| TTGGGCTTAGGGCCTAACTC+GGG | - | chr4_2:6686482-6686501 | Msa0585630:intron | 55.0% | |
| AATAGCAGCTGTGGGCGATG+TGG | - | chr4_2:6686890-6686909 | Msa0585630:CDS | 55.0% | |
| !! | TGGCTAGTCTCTGCCACACA+CGG | - | chr4_2:6686918-6686937 | Msa0585630:CDS | 55.0% |
| !! | GAAGAGCATTGCGCTGCTAC+AGG | - | chr4_2:6687021-6687040 | Msa0585630:intron | 55.0% |
| ! | TCTGGGACGGAGGTTGACAA+AGG | + | chr4_2:6687125-6687144 | None:intergenic | 55.0% |
| CCCTCAGAGAATACAAGGGG+TGG | + | chr4_2:6687272-6687291 | None:intergenic | 55.0% | |
| GGGCCCTCAGAGAATACAAG+GGG | + | chr4_2:6687275-6687294 | None:intergenic | 55.0% | |
| GGGGCCCTCAGAGAATACAA+GGG | + | chr4_2:6687276-6687295 | None:intergenic | 55.0% | |
| AGGGGCCCTCAGAGAATACA+AGG | + | chr4_2:6687277-6687296 | None:intergenic | 55.0% | |
| ! | CCCTCATATACAGCACCGGA+AGG | - | chr4_2:6687293-6687312 | Msa0585630:intron | 55.0% |
| AGCTACCAGAAGGGTCCTTC+CGG | + | chr4_2:6687311-6687330 | None:intergenic | 55.0% | |
| !! | AAGGGATAATGGGCTGGGTC+TGG | - | chr4_2:6687389-6687408 | Msa0585630:intron | 55.0% |
| GACAGTCTCGGATAGAGGAG+TGG | + | chr4_2:6687835-6687854 | None:intergenic | 55.0% | |
| !! | CAAGAAGTACCCTTGCCCGA+AGG | - | chr4_2:6687981-6688000 | Msa0585630:intron | 55.0% |
| CCGTTTCCGACCAGTGTACT+TGG | + | chr4_2:6688562-6688581 | None:intergenic | 55.0% | |
| TGGATCGGGACTTAGCGGTG+AGG | - | chr4_2:6684821-6684840 | Msa0585630:intron | 60.0% | |
| CGCATTGGAGCGTGAGGTTG+AGG | - | chr4_2:6685008-6685027 | Msa0585630:intron | 60.0% | |
| CTGTGGGCGATGTGGAACAG+TGG | - | chr4_2:6686898-6686917 | Msa0585630:CDS | 60.0% | |
| CTAGTCTCTGCCACACACGG+CGG | - | chr4_2:6686921-6686940 | Msa0585630:CDS | 60.0% | |
| !! | AGGTAGAGGTTGATGGCGGC+TGG | + | chr4_2:6687105-6687124 | None:intergenic | 60.0% |
| ! | TAAGAGTGGGTCTGGGACGG+AGG | + | chr4_2:6687135-6687154 | None:intergenic | 60.0% |
| GGCTAAGAGTGGGTCTGGGA+CGG | + | chr4_2:6687138-6687157 | None:intergenic | 60.0% | |
| GGGCCCCTCATATACAGCAC+CGG | - | chr4_2:6687289-6687308 | Msa0585630:intron | 60.0% | |
| GCCCCTACAACTGATGTCCC+TGG | + | chr4_2:6687555-6687574 | None:intergenic | 60.0% | |
| GAAGACGACGACGACGACAG+TGG | - | chr4_2:6688011-6688030 | Msa0585630:intron | 60.0% | |
| ACCAGAGGCGGTAGCTCCAC+CGG | - | chr4_2:6684367-6684386 | Msa0585630:three_prime_UTR | 65.0% | |
| GGCTTAGGGCCTAACTCGGG+AGG | - | chr4_2:6686485-6686504 | Msa0585630:intron | 65.0% | |
| TGCCACACACGGCGGAACAG+TGG | - | chr4_2:6686929-6686948 | Msa0585630:CDS | 65.0% | |
| AGCCACTGTTCCGCCGTGTG+TGG | + | chr4_2:6686934-6686953 | None:intergenic | 65.0% | |
| CCTCGTTCCCTGGTTGCCAC+CGG | - | chr4_2:6687059-6687078 | Msa0585630:intron | 65.0% | |
| TGGAACGCCGGTGGCAACCA+GGG | + | chr4_2:6687069-6687088 | None:intergenic | 65.0% | |
| ATGGAACGCCGGTGGCAACC+AGG | + | chr4_2:6687070-6687089 | None:intergenic | 65.0% | |
| GATGGCAGGGGATGGAACGC+CGG | + | chr4_2:6687081-6687100 | None:intergenic | 65.0% | |
| !! | AGGTTGATGGCGGCTGGCGA+TGG | + | chr4_2:6687099-6687118 | None:intergenic | 65.0% |
| ! | CAGCACCGGAAGGACCCTTC+TGG | - | chr4_2:6687303-6687322 | Msa0585630:intron | 65.0% |
| TCCGGTGGAGCTACCGCCTC+TGG | + | chr4_2:6684371-6684390 | None:intergenic | 70.0% | |
| CCGGTGGCAACCAGGGAACG+AGG | + | chr4_2:6687062-6687081 | None:intergenic | 70.0% | |
| ATGGCGGCTGGCGATGGCAG+GGG | + | chr4_2:6687093-6687112 | None:intergenic | 70.0% | |
| ! | GATGGCGGCTGGCGATGGCA+GGG | + | chr4_2:6687094-6687113 | None:intergenic | 70.0% |
| !! | TGATGGCGGCTGGCGATGGC+AGG | + | chr4_2:6687095-6687114 | None:intergenic | 70.0% |
| GGCAGGGGATGGAACGCCGG+TGG | + | chr4_2:6687078-6687097 | None:intergenic | 75.0% | |
| CGGCTGGCGATGGCAGGGGA+TGG | + | chr4_2:6687089-6687108 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 6684356 | 6688875 | 6684356 | ID=Msa0585630;Name=Msa0585630 |
| chr4_2 | mRNA | 6684356 | 6688875 | 6684356 | ID=Msa0585630-mRNA-1;Parent=Msa0585630;Name=Msa0585630-mRNA-1;_AED=0.58;_eAED=0.58;_QI=0|0.12|0.11|0.22|1|1|9|279|283 |
| chr4_2 | exon | 6684356 | 6684799 | 6684356 | ID=Msa0585630-mRNA-1:exon:1629;Parent=Msa0585630-mRNA-1 |
| chr4_2 | exon | 6685179 | 6685290 | 6685179 | ID=Msa0585630-mRNA-1:exon:1628;Parent=Msa0585630-mRNA-1 |
| chr4_2 | exon | 6686873 | 6687025 | 6686873 | ID=Msa0585630-mRNA-1:exon:1627;Parent=Msa0585630-mRNA-1 |
| chr4_2 | exon | 6687140 | 6687189 | 6687140 | ID=Msa0585630-mRNA-1:exon:1626;Parent=Msa0585630-mRNA-1 |
| chr4_2 | exon | 6687460 | 6687516 | 6687460 | ID=Msa0585630-mRNA-1:exon:1625;Parent=Msa0585630-mRNA-1 |
| chr4_2 | exon | 6688172 | 6688227 | 6688172 | ID=Msa0585630-mRNA-1:exon:1624;Parent=Msa0585630-mRNA-1 |
| chr4_2 | exon | 6688331 | 6688414 | 6688331 | ID=Msa0585630-mRNA-1:exon:1623;Parent=Msa0585630-mRNA-1 |
| chr4_2 | exon | 6688625 | 6688700 | 6688625 | ID=Msa0585630-mRNA-1:exon:1622;Parent=Msa0585630-mRNA-1 |
| chr4_2 | exon | 6688777 | 6688875 | 6688777 | ID=Msa0585630-mRNA-1:exon:1621;Parent=Msa0585630-mRNA-1 |
| chr4_2 | CDS | 6688777 | 6688875 | 6688777 | ID=Msa0585630-mRNA-1:cds;Parent=Msa0585630-mRNA-1 |
| chr4_2 | CDS | 6688625 | 6688700 | 6688625 | ID=Msa0585630-mRNA-1:cds;Parent=Msa0585630-mRNA-1 |
| chr4_2 | CDS | 6688331 | 6688414 | 6688331 | ID=Msa0585630-mRNA-1:cds;Parent=Msa0585630-mRNA-1 |
| chr4_2 | CDS | 6688172 | 6688227 | 6688172 | ID=Msa0585630-mRNA-1:cds;Parent=Msa0585630-mRNA-1 |
| chr4_2 | CDS | 6687460 | 6687516 | 6687460 | ID=Msa0585630-mRNA-1:cds;Parent=Msa0585630-mRNA-1 |
| chr4_2 | CDS | 6687140 | 6687189 | 6687140 | ID=Msa0585630-mRNA-1:cds;Parent=Msa0585630-mRNA-1 |
| chr4_2 | CDS | 6686873 | 6687025 | 6686873 | ID=Msa0585630-mRNA-1:cds;Parent=Msa0585630-mRNA-1 |
| chr4_2 | CDS | 6685179 | 6685290 | 6685179 | ID=Msa0585630-mRNA-1:cds;Parent=Msa0585630-mRNA-1 |
| chr4_2 | CDS | 6684635 | 6684799 | 6684635 | ID=Msa0585630-mRNA-1:cds;Parent=Msa0585630-mRNA-1 |
| chr4_2 | three_prime_UTR | 6684356 | 6684634 | 6684356 | ID=Msa0585630-mRNA-1:three_prime_utr;Parent=Msa0585630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
