AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0529960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0529960 MtrunA17_Chr4g0001321 98.148 162 3 0 1 162 1 162 1.18e-115 330
Msa0529960 MtrunA17_Chr2g0333781 81.290 155 27 1 8 162 13 165 3.62e-88 261
Msa0529960 MtrunA17_Chr4g0002661 55.484 155 64 2 13 162 9 163 1.91e-54 174
Msa0529960 MtrunA17_Chr4g0002961 56.129 155 63 2 13 162 9 163 1.46e-49 162
Msa0529960 MtrunA17_Chr4g0039321 53.125 160 68 5 11 163 3 162 5.04e-48 158
Msa0529960 MtrunA17_Chr8g0364051 52.174 161 70 4 10 163 1 161 1.30e-47 157
Msa0529960 MtrunA17_Chr3g0077221 51.852 162 71 4 9 163 2 163 2.18e-47 156
Msa0529960 MtrunA17_Chr4g0039311 52.500 160 69 4 11 163 5 164 7.52e-47 155
Msa0529960 MtrunA17_Chr3g0077231 53.691 149 62 4 17 158 6 154 1.37e-46 154
Msa0529960 MtrunA17_Chr8g0363831 50.932 161 72 4 10 163 2 162 2.37e-45 151
Msa0529960 MtrunA17_Chr5g0431311 48.387 155 74 2 15 163 3 157 6.44e-43 144
Msa0529960 MtrunA17_Chr3g0106111 47.742 155 75 2 15 163 3 157 3.93e-42 142
Msa0529960 MtrunA17_Chr1g0155411 48.387 155 72 4 15 163 6 158 1.66e-41 141
Msa0529960 MtrunA17_Chr1g0155431 47.097 155 74 4 15 163 6 158 6.17e-40 137
Msa0529960 MtrunA17_Chr2g0291541 44.516 155 75 4 14 159 7 159 1.22e-35 126
Msa0529960 MtrunA17_Chr5g0423551 45.946 148 74 3 18 159 5 152 1.30e-34 123
Msa0529960 MtrunA17_Chr2g0331211 45.513 156 78 3 14 162 2 157 3.31e-34 122
Msa0529960 MtrunA17_Chr7g0245641 41.558 154 80 5 17 162 45 196 1.76e-29 110
Msa0529960 MtrunA17_Chr7g0245741 40.690 145 77 4 17 154 8 150 1.15e-28 107
Msa0529960 MtrunA17_Chr7g0245671 41.558 154 79 6 17 162 8 158 1.22e-28 107
Msa0529960 MtrunA17_Chr7g0245731 41.379 145 76 4 17 154 58 200 1.86e-28 108
Msa0529960 MtrunA17_Chr4g0010991 40.764 157 81 6 16 163 7 160 3.09e-28 106
Msa0529960 MtrunA17_Chr7g0245691 38.312 154 85 6 17 162 8 159 2.91e-26 101
Msa0529960 MtrunA17_Chr4g0042101 41.781 146 70 4 18 150 25 168 5.78e-26 101
Msa0529960 MtrunA17_Chr7g0245631 38.562 153 85 5 17 162 8 158 2.13e-25 99.0
Msa0529960 MtrunA17_Chr4g0048961 36.810 163 96 4 6 162 3 164 1.82e-24 97.1
Msa0529960 MtrunA17_Chr2g0282011 33.784 148 90 4 17 156 8 155 1.01e-20 87.0
Msa0529960 MtrunA17_Chr2g0281991 34.211 152 86 5 17 157 8 156 7.58e-20 84.3
Msa0529960 MtrunA17_Chr2g0282001 33.108 148 91 4 17 156 7 154 2.16e-19 83.2
Msa0529960 MtrunA17_Chr7g0275521 32.215 149 89 5 17 155 7 153 1.39e-18 80.9
Msa0529960 MtrunA17_Chr5g0411071 32.738 168 97 7 2 163 3 160 3.11e-18 79.3
Msa0529960 MtrunA17_Chr6g0450211 32.278 158 94 5 17 163 55 210 1.98e-14 69.3
Msa0529960 MtrunA17_Chr7g0245711 35.577 104 60 3 56 154 11 112 3.04e-13 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0529960 AT1G80820.2 70.946 148 43 0 15 162 6 153 4.30e-77 231
Msa0529960 AT1G15950.6 69.737 152 46 0 11 162 7 158 8.48e-77 230
Msa0529960 AT1G15950.5 69.737 152 46 0 11 162 7 158 1.37e-76 230
Msa0529960 AT1G80820.1 70.946 148 43 0 15 162 6 153 2.65e-76 231
Msa0529960 AT1G15950.4 67.949 156 50 0 7 162 3 158 3.15e-76 229
Msa0529960 AT1G15950.3 69.281 153 47 0 10 162 6 158 3.99e-76 231
Msa0529960 AT1G15950.1 69.281 153 47 0 10 162 6 158 3.99e-76 231
Msa0529960 AT1G15950.2 69.281 153 47 0 10 162 6 158 6.66e-76 230
Msa0529960 AT2G33590.1 52.980 151 66 2 17 162 9 159 3.87e-50 164
Msa0529960 AT5G19440.1 53.750 160 67 4 11 163 4 163 4.21e-48 158
Msa0529960 AT1G51410.1 50.932 161 70 5 11 163 3 162 1.21e-45 152
Msa0529960 AT1G66800.1 54.902 153 58 5 10 155 1 149 6.41e-44 147
Msa0529960 AT1G09480.2 48.750 160 75 4 10 162 1 160 2.84e-42 143
Msa0529960 AT1G09510.1 49.359 156 72 4 15 163 6 161 2.87e-42 143
Msa0529960 AT2G33600.1 51.656 151 68 2 17 162 9 159 5.93e-42 142
Msa0529960 AT1G09480.1 48.750 160 75 4 10 162 48 207 6.44e-42 144
Msa0529960 AT1G76470.1 54.054 148 63 1 15 157 5 152 1.17e-41 142
Msa0529960 AT1G09490.1 49.032 155 72 4 15 162 6 160 4.54e-41 140
Msa0529960 AT2G02400.1 45.513 156 77 3 13 162 2 155 4.91e-40 137
Msa0529960 AT4G35420.1 50.327 153 70 4 17 163 8 160 9.46e-40 137
Msa0529960 AT1G09500.3 49.045 157 70 5 15 162 6 161 9.59e-40 135
Msa0529960 AT1G09500.1 51.007 149 63 5 15 154 6 153 1.96e-39 136
Msa0529960 AT5G58490.1 46.711 152 75 2 15 160 7 158 3.23e-39 135
Msa0529960 AT5G42800.1 48.387 155 72 4 15 163 6 158 2.13e-36 129
Msa0529960 AT1G68540.1 42.953 149 77 3 19 159 6 154 4.17e-30 112
Msa0529960 AT2G45400.4 42.581 155 80 5 17 162 40 194 8.18e-30 109
Msa0529960 AT2G45400.2 42.581 155 80 5 17 162 40 194 2.44e-29 109
Msa0529960 AT2G45400.1 42.581 155 80 5 17 162 40 194 4.02e-29 110
Msa0529960 AT4G27250.2 39.130 161 82 4 16 162 12 170 1.28e-26 103
Msa0529960 AT4G27250.1 39.130 161 82 4 16 162 12 170 1.43e-26 103
Msa0529960 AT1G25460.1 39.073 151 86 2 19 163 6 156 2.02e-26 102
Msa0529960 AT1G61720.1 36.364 154 91 5 15 162 11 163 4.00e-25 99.0
Msa0529960 AT1G15950.7 73.333 60 16 0 103 162 1 60 9.68e-23 90.9
Msa0529960 AT1G09490.2 42.735 117 61 3 52 162 13 129 7.32e-22 89.4
Msa0529960 AT1G09500.2 46.154 117 53 5 47 154 4 119 4.50e-21 87.4
Msa0529960 AT2G23910.3 33.333 153 91 4 18 163 11 159 1.02e-20 86.3
Msa0529960 AT2G23910.2 33.333 153 91 4 18 163 11 159 1.04e-20 86.3
Msa0529960 AT2G23910.1 33.333 153 91 4 18 163 11 159 1.90e-20 85.9
Msa0529960 AT4G30470.1 31.373 153 103 2 13 163 6 158 3.42e-16 74.3
Msa0529960 AT2G45400.3 35.965 114 67 3 55 162 24 137 1.20e-12 64.7
Msa0529960 AT2G23910.4 31.897 116 69 3 54 163 14 125 3.53e-11 60.1
Msa0529960 AT4G33360.2 33.333 123 70 4 14 132 12 126 5.85e-11 59.7
Msa0529960 AT4G33360.1 33.333 123 70 4 14 132 12 126 6.24e-11 59.7
Msa0529960 AT4G33360.3 34.167 120 67 4 17 132 3 114 8.14e-11 59.3

Find 134 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAACATCTCTACTCGTATT+TGG 0.148678 4_1:-3830727 None:intergenic
TGTAATTATGTAAGCTCTTT+TGG 0.158652 4_1:+3832487 Msa0529960:three_prime_UTR
TTCTAGATTTGGCAATATTT+TGG 0.164008 4_1:+3833064 Msa0529960:three_prime_UTR
TATGAAGAAATAAATTAATT+TGG 0.185887 4_1:-3829945 None:intergenic
CTGGCGGGTTTATAGCTTCT+TGG 0.222359 4_1:+3830043 Msa0529960:CDS
TCTAAATTCCGTCGGTGTTC+AGG 0.241555 4_1:-3830856 None:intergenic
CACAGCTTTGAATTCCTCTT+TGG 0.261128 4_1:-3831518 None:intergenic
GCCTGAACGATTGTTTAATT+TGG 0.269511 4_1:-3831159 None:intergenic
TCTTTCAAGTGATCATTCTT+TGG 0.278143 4_1:-3830351 None:intergenic
TTGCTTCTTCTAAATGGATT+AGG 0.285224 4_1:-3831544 None:intergenic
TTCGCTAAAGATTCGCTTGC+AGG 0.292270 4_1:-3831303 None:intergenic
TCTATTCAATCTGTTGTTCA+TGG 0.292368 4_1:+3830432 Msa0529960:CDS
CGCTTGCAGGGGTATGATTC+CGG 0.293323 4_1:-3831290 None:intergenic
TATTCTTTAGTATACTCTTT+TGG 0.302036 4_1:-3831659 None:intergenic
ATCGATTGGAACGGTCTATA+TGG 0.308610 4_1:+3830702 Msa0529960:CDS
CTTAAGGTTAGGGTTCATTT+GGG 0.310144 4_1:-3831227 None:intergenic
GGAGAGCTTCGTGTTGTTGA+TGG 0.321565 4_1:-3831269 None:intergenic
GAATGATCACTTGAAAGAAT+TGG 0.322640 4_1:+3830356 Msa0529960:CDS
TTGGCTTGTCAAACTTCTCT+TGG 0.330178 4_1:+3830062 Msa0529960:CDS
TCCATTTAGAAGAAGCAAAA+AGG 0.330756 4_1:+3831549 Msa0529960:three_prime_UTR
GTGTAGTGAACGCTTCATTT+TGG 0.331353 4_1:-3831137 None:intergenic
AGCGAATCTTTAGCGAATAT+TGG 0.337148 4_1:+3831309 Msa0529960:three_prime_UTR
ACTTAAGGTTAGGGTTCATT+TGG 0.343647 4_1:-3831228 None:intergenic
ATAATGTGATAACTCAAATA+TGG 0.343716 4_1:-3829858 None:intergenic
TTCTTTGTTCCATTCACTGC+TGG 0.346517 4_1:-3830628 None:intergenic
AATTAGAGATGGAATATAAT+TGG 0.356010 4_1:+3830911 Msa0529960:three_prime_UTR
CTGAAACAAGGGAACTCATT+TGG 0.359058 4_1:+3831629 Msa0529960:three_prime_UTR
GAAAGAGGTTACACTGTTAG+AGG 0.367164 4_1:+3830084 Msa0529960:CDS
AGACGGATTAATTCAGTCTC+TGG 0.368956 4_1:-3831072 None:intergenic
AAATTTGCATACCTGGGTTT+CGG 0.371860 4_1:-3830113 None:intergenic
AGTTCCTGTTTCTTCGTCAA+TGG 0.372308 4_1:-3831584 None:intergenic
CAACATCTCTACTCGTATTT+GGG 0.380185 4_1:-3830726 None:intergenic
ATAGAGAAGGACTTAAGGTT+AGG 0.381153 4_1:-3831238 None:intergenic
CACTAGCAATCACCCTTTGC+TGG 0.383551 4_1:-3832885 None:intergenic
TGAACCAAGTTAATCTCAAA+AGG 0.387927 4_1:-3832604 None:intergenic
CAGCTAGAATACCCGTTTGC+TGG 0.389100 4_1:-3833118 None:intergenic
ACCTAGTTATTGTTACTAAT+AGG 0.389526 4_1:-3832953 None:intergenic
TGAACCTAGTTAATCTCAAA+AGG 0.397778 4_1:-3832656 None:intergenic
GTTCCTGTTTCTTCGTCAAT+GGG 0.403348 4_1:-3831583 None:intergenic
TTATTCTTTGCTATCTCCAT+TGG 0.403938 4_1:+3829877 Msa0529960:five_prime_UTR
ACCGTGTGTGTCACCGGTGC+TGG 0.421366 4_1:+3830024 Msa0529960:CDS
AAACGGGTATTCTAGCTGAT+TGG 0.426153 4_1:+3833123 Msa0529960:three_prime_UTR
AGATGAAGAGTGAATGCCTT+GGG 0.435029 4_1:+3832823 Msa0529960:three_prime_UTR
GGAAGATAGATGCTTCTTGT+TGG 0.442890 4_1:-3829837 None:intergenic
TTGCAATAGAGAAGGACTTA+AGG 0.443707 4_1:-3831243 None:intergenic
AACGGGTATTCTAGCTGATT+GGG 0.446621 4_1:+3833124 Msa0529960:three_prime_UTR
TAGTTTACTTTAAACTGTGA+TGG 0.448066 4_1:+3832716 Msa0529960:three_prime_UTR
ACACCCATTGACGAAGAAAC+AGG 0.453337 4_1:+3831580 Msa0529960:three_prime_UTR
TAACTAGGTCAGTAAGGAAA+TGG 0.454261 4_1:-3832419 None:intergenic
CTTACAGGGTTGTCGGTGAC+AGG 0.466203 4_1:-3830483 None:intergenic
GTCAAACTTCTCTTGGAAAG+AGG 0.467940 4_1:+3830069 Msa0529960:CDS
AGCTAGAATACCCGTTTGCT+GGG 0.470005 4_1:-3833117 None:intergenic
AGTTTACTTTAAACTGTGAT+GGG 0.470733 4_1:+3832717 Msa0529960:three_prime_UTR
AGAGAGGCTAACTTTGCATA+AGG 0.471199 4_1:+3830389 Msa0529960:CDS
CACCGGTGACACACACGGTT+TGG 0.477611 4_1:-3830020 None:intergenic
TCTCTAAATTCTGTCTCTAA+AGG 0.479209 4_1:-3830957 None:intergenic
AAAATTCCTTACAGGGTTGT+CGG 0.489586 4_1:-3830490 None:intergenic
TCAGTAAGGAAATGGTAACT+TGG 0.490987 4_1:-3832411 None:intergenic
GAAGAAGAGATCTGAAACAA+GGG 0.491917 4_1:+3831618 Msa0529960:three_prime_UTR
TCAGCAAATTGCCCAGCAAA+CGG 0.491996 4_1:+3833106 Msa0529960:three_prime_UTR
GACTGATGAAATGTTATCAT+AGG 0.492521 4_1:-3829986 None:intergenic
AGTGAATGCCTTGGGGACAT+TGG 0.494384 4_1:+3832831 Msa0529960:three_prime_UTR
CAGCAAATTGCCCAGCAAAC+GGG 0.500846 4_1:+3833107 Msa0529960:three_prime_UTR
CATATAATAGGATGAGATGT+TGG 0.502572 4_1:+3830603 Msa0529960:intron
GACCAAACCGTGTGTGTCAC+CGG 0.504509 4_1:+3830018 Msa0529960:CDS
TAGAGAAGGACTTAAGGTTA+GGG 0.504626 4_1:-3831237 None:intergenic
CTTTCAGTGTTTATCGATGG+TGG 0.504986 4_1:-3831191 None:intergenic
GTTGTGTTCACTTCATCGAT+TGG 0.505971 4_1:+3830688 Msa0529960:CDS
AGCTATAAACCCGCCAGCAC+CGG 0.506486 4_1:-3830037 None:intergenic
GATGAAATGTTATCATAGGC+AGG 0.507059 4_1:-3829982 None:intergenic
TTAAAGTAACTAGGTCAGTA+AGG 0.508787 4_1:-3832425 None:intergenic
ACCAAATTAAACAATCGTTC+AGG 0.511844 4_1:+3831158 Msa0529960:three_prime_UTR
ATCAACAACACGAAGCTCTC+CGG 0.517903 4_1:+3831271 Msa0529960:three_prime_UTR
TTGTAGTTGATGAATCGTAT+TGG 0.525667 4_1:+3830746 Msa0529960:CDS
TAAATTATATTTGTCAGAGA+CGG 0.530417 4_1:-3831017 None:intergenic
GAACCTAGTTAATCTCAAAA+GGG 0.530822 4_1:-3832655 None:intergenic
TCGCTAAAGATTCGCTTGCA+GGG 0.533424 4_1:-3831302 None:intergenic
ATGTTGGAGCCAGCAGTGAA+TGG 0.533675 4_1:+3830619 Msa0529960:CDS
GACGGATTAATTCAGTCTCT+GGG 0.535839 4_1:-3831071 None:intergenic
GGAAATGGTAACTTGGGTTG+TGG 0.536660 4_1:-3832404 None:intergenic
GAGCTTTCAGTGTTTATCGA+TGG 0.543964 4_1:-3831194 None:intergenic
TGGAATATAATTGGCTGAGA+CGG 0.544378 4_1:+3830920 Msa0529960:three_prime_UTR
TGTTCTATCTCTATTAGAGA+CGG 0.545775 4_1:+3830888 Msa0529960:three_prime_UTR
CAACAAAGTCACTAAAGTTG+TGG 0.546822 4_1:-3833218 None:intergenic
GTTGGTAATTTAAAGTAACT+AGG 0.547762 4_1:-3832434 None:intergenic
TTAAAATAAATTAGTCCCGT+AGG 0.548619 4_1:+3831111 Msa0529960:three_prime_UTR
CGCTAAAGATTCGCTTGCAG+GGG 0.551801 4_1:-3831301 None:intergenic
TCTGTTGTTCATGGTTGCCA+TGG 0.552494 4_1:+3830441 Msa0529960:CDS
GTCAGAGACGGATTTAGAGA+CGG 0.554392 4_1:-3831005 None:intergenic
TGTGTGTCACCGGTGCTGGC+GGG 0.554567 4_1:+3830028 Msa0529960:CDS
GAACCAAGTTAATCTCAAAA+GGG 0.557739 4_1:-3832603 None:intergenic
GATAACATTTCATCAGTCTC+CGG 0.558657 4_1:+3829991 Msa0529960:CDS
GACAATACAAAGTCCAGCAA+AGG 0.562161 4_1:+3832872 Msa0529960:three_prime_UTR
TGTTTGTACAACAGCCAAAG+AGG 0.564205 4_1:+3831504 Msa0529960:intron
GTGTGTGTCACCGGTGCTGG+CGG 0.565567 4_1:+3830027 Msa0529960:CDS
TTAAGGTTAGGGTTCATTTG+GGG 0.567536 4_1:-3831226 None:intergenic
AAGATGATGAGTACGAGGTG+TGG 0.573803 4_1:+3832791 Msa0529960:three_prime_UTR
ATTAGAGACGGAATTAGAGA+TGG 0.575566 4_1:+3830900 Msa0529960:three_prime_UTR
GATCACTTGAAAGAATTGGA+AGG 0.576295 4_1:+3830360 Msa0529960:CDS
CAGTAAGGAAATGGTAACTT+GGG 0.578086 4_1:-3832410 None:intergenic
AGAAGAAGAGATCTGAAACA+AGG 0.580939 4_1:+3831617 Msa0529960:three_prime_UTR
ATCATCTTTAATCATCAAAG+TGG 0.582716 4_1:-3832776 None:intergenic
AGAGGGACTGTCCGAAACCC+AGG 0.583151 4_1:+3830102 Msa0529960:CDS
ACAATACAAAGTCCAGCAAA+GGG 0.589710 4_1:+3832873 Msa0529960:three_prime_UTR
GTTCACTTCATCGATTGGAA+CGG 0.592538 4_1:+3830693 Msa0529960:CDS
GAGACGGAAAATGTTACTGA+CGG 0.598264 4_1:-3830989 None:intergenic
ACACACGGTTTGGTCGCTAC+CGG 0.598639 4_1:-3830010 None:intergenic
AAGATGAAGAGTGAATGCCT+TGG 0.599162 4_1:+3832822 Msa0529960:three_prime_UTR
AAAGAGGTTACACTGTTAGA+GGG 0.599388 4_1:+3830085 Msa0529960:CDS
TAAGGTTAGGGTTCATTTGG+GGG 0.603608 4_1:-3831225 None:intergenic
CTGAACAACATCAACTGAGT+GGG 0.606703 4_1:+3831399 Msa0529960:three_prime_UTR
CACTGGAAAAGAAAGACCAA+TGG 0.607912 4_1:-3829893 None:intergenic
GTAGTGAATTAATCAAACCT+TGG 0.609523 4_1:-3830794 None:intergenic
GGTGGATGAGAAATTAACAC+TGG 0.612419 4_1:-3829910 None:intergenic
ACATTGGAGACATCTTAAGA+TGG 0.615605 4_1:+3832847 Msa0529960:three_prime_UTR
AGGGTTGTCGGTGACAGGAG+AGG 0.622915 4_1:-3830478 None:intergenic
AACACGGACACAGAGAGAGT+TGG 0.630809 4_1:-3832456 None:intergenic
CTTTAGCGAATATTGGCGAG+TGG 0.637201 4_1:+3831316 Msa0529960:three_prime_UTR
AGGCTGTGTGGAACACACCA+TGG 0.639078 4_1:-3830458 None:intergenic
TCCTATTAGTAACAATAACT+AGG 0.639706 4_1:+3832952 Msa0529960:three_prime_UTR
AGATGTCTCCAATGTCCCCA+AGG 0.642695 4_1:-3832839 None:intergenic
AATTGGAAGGAGCAAGAGAG+AGG 0.645670 4_1:+3830373 Msa0529960:CDS
ACACCGACGGAATTTAGAGA+CGG 0.660008 4_1:+3830861 Msa0529960:three_prime_UTR
GCCAGCACCGGTGACACACA+CGG 0.660755 4_1:-3830025 None:intergenic
TAATTACATTATGCTAAACA+CGG 0.660933 4_1:-3832472 None:intergenic
GAGTATACTAAAGAATACGA+TGG 0.665887 4_1:+3831665 Msa0529960:three_prime_UTR
AATCCGTCTCTAAATTCCGT+CGG 0.670953 4_1:-3830864 None:intergenic
CGGTGACAGGAGAGGCTGTG+TGG 0.679397 4_1:-3830470 None:intergenic
TATACTAAAGAATACGATGG+AGG 0.683347 4_1:+3831668 Msa0529960:three_prime_UTR
TCTGAACAACATCAACTGAG+TGG 0.687117 4_1:+3831398 Msa0529960:three_prime_UTR
GATGAAGAGTGAATGCCTTG+GGG 0.696957 4_1:+3832824 Msa0529960:three_prime_UTR
AGAGCATTGCAAGAACACCA+AGG 0.704040 4_1:+3830777 Msa0529960:CDS
CGGACACAGAGAGAGTTGGT+TGG 0.714097 4_1:-3832452 None:intergenic
GATTAAAGATGATGAGTACG+AGG 0.764374 4_1:+3832786 Msa0529960:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGAAGAAATAAATTAATT+TGG - chr4_1:3829948-3829967 None:intergenic 10.0%
!! GTTAAGTTAAATAAATAAAT+TGG + chr4_1:3830242-3830261 Msa0529960:intron 10.0%
!!! TTATTTTATAATTTAAACTC+AGG + chr4_1:3831040-3831059 Msa0529960:three_prime_UTR 10.0%
!!! AATTATAATTTTTTTAGAGA+CGG - chr4_1:3831092-3831111 None:intergenic 10.0%
!! TAAATAAGTAAACAAATAAA+TGG - chr4_1:3831731-3831750 None:intergenic 10.0%
!! ATAAAATTAAAATAGTATGT+TGG + chr4_1:3832064-3832083 Msa0529960:intron 10.0%
!!! TTAATTTGGTAAGAAAAAAA+TGG - chr4_1:3829934-3829953 None:intergenic 15.0%
!! TGTGAAATTAAATTTACAAA+TGG - chr4_1:3830525-3830544 None:intergenic 15.0%
!! TTTATAAAGAGTAACTTATA+AGG + chr4_1:3830559-3830578 Msa0529960:intron 15.0%
!!! TTTAATTTGTGTTAAACAAA+AGG + chr4_1:3831756-3831775 Msa0529960:intron 15.0%
!!! TTTTTTATAACTCAATGAAT+TGG + chr4_1:3831954-3831973 Msa0529960:intron 15.0%
!!! TGAATTGGTTTTATTTTTTA+TGG + chr4_1:3831969-3831988 Msa0529960:intron 15.0%
!!! GAATTGGTTTTATTTTTTAT+GGG + chr4_1:3831970-3831989 Msa0529960:intron 15.0%
!!! TTGATTTTATTTTGTAGATA+TGG + chr4_1:3832367-3832386 Msa0529960:intron 15.0%
!!! ATCTTTGATTTATTTTTAGT+TGG + chr4_1:3833272-3833291 Msa0529960:three_prime_UTR 15.0%
!! ATAATGTGATAACTCAAATA+TGG - chr4_1:3829861-3829880 None:intergenic 20.0%
!! AAATTATTGCTATGTTTATG+TGG + chr4_1:3830180-3830199 Msa0529960:intron 20.0%
!!! GTGAATTTTTGTATAATTAG+AGG + chr4_1:3830326-3830345 Msa0529960:intron 20.0%
!!! AAGGTGAATTAATCATTTTA+TGG + chr4_1:3830578-3830597 Msa0529960:intron 20.0%
!!! CATTTTATGGAACATATAAT+AGG + chr4_1:3830591-3830610 Msa0529960:intron 20.0%
!! AATTAGAGATGGAATATAAT+TGG + chr4_1:3830911-3830930 Msa0529960:three_prime_UTR 20.0%
!! TAAATTATATTTGTCAGAGA+CGG - chr4_1:3831020-3831039 None:intergenic 20.0%
!!! TATTCTTTAGTATACTCTTT+TGG - chr4_1:3831662-3831681 None:intergenic 20.0%
!!! AGATTGATGTTTTTTTTTAC+AGG + chr4_1:3831921-3831940 Msa0529960:intron 20.0%
!!! AAAATTCTTGTTTCATACAT+AGG - chr4_1:3832252-3832271 None:intergenic 20.0%
!! TGAAACAATTATCAAGTTTA+AGG + chr4_1:3832310-3832329 Msa0529960:intron 20.0%
!! TAATTACATTATGCTAAACA+CGG - chr4_1:3832475-3832494 None:intergenic 20.0%
!! TTTGAGCAAAAATTTATAGT+TGG + chr4_1:3833034-3833053 Msa0529960:three_prime_UTR 20.0%
! ATTTGGTAAGAAAAAAATGG+TGG - chr4_1:3829931-3829950 None:intergenic 25.0%
! AACAAAGAAAATTCCTTACA+GGG - chr4_1:3830500-3830519 None:intergenic 25.0%
! AAACAAAGAAAATTCCTTAC+AGG - chr4_1:3830501-3830520 None:intergenic 25.0%
! TTAAAATAAATTAGTCCCGT+AGG + chr4_1:3831111-3831130 Msa0529960:three_prime_UTR 25.0%
!!! TTGTGTTTTGATTTCATTTC+TGG + chr4_1:3831465-3831484 Msa0529960:intron 25.0%
!! TTAAACAAAAGGAGTTGATT+AGG + chr4_1:3831767-3831786 Msa0529960:intron 25.0%
!! GCAAAATAATCCTTGATTTT+GGG - chr4_1:3831872-3831891 None:intergenic 25.0%
!! TGCAAAATAATCCTTGATTT+TGG - chr4_1:3831873-3831892 None:intergenic 25.0%
! GCTACACAAAATATATGTAT+AGG + chr4_1:3832156-3832175 Msa0529960:intron 25.0%
!! AATTATCAAGTTTAAGGTGA+TGG + chr4_1:3832316-3832335 Msa0529960:intron 25.0%
!!! GTTGGTAATTTAAAGTAACT+AGG - chr4_1:3832437-3832456 None:intergenic 25.0%
!! TGTAATTATGTAAGCTCTTT+TGG + chr4_1:3832487-3832506 Msa0529960:three_prime_UTR 25.0%
! TAGTTTACTTTAAACTGTGA+TGG + chr4_1:3832716-3832735 Msa0529960:three_prime_UTR 25.0%
! AGTTTACTTTAAACTGTGAT+GGG + chr4_1:3832717-3832736 Msa0529960:three_prime_UTR 25.0%
! ATCATCTTTAATCATCAAAG+TGG - chr4_1:3832779-3832798 None:intergenic 25.0%
! TCCTATTAGTAACAATAACT+AGG + chr4_1:3832952-3832971 Msa0529960:three_prime_UTR 25.0%
! ACCTAGTTATTGTTACTAAT+AGG - chr4_1:3832956-3832975 None:intergenic 25.0%
!! TTCTAGATTTGGCAATATTT+TGG + chr4_1:3833064-3833083 Msa0529960:three_prime_UTR 25.0%
! TTATTCTTTGCTATCTCCAT+TGG + chr4_1:3829877-3829896 Msa0529960:five_prime_UTR 30.0%
GACTGATGAAATGTTATCAT+AGG - chr4_1:3829989-3830008 None:intergenic 30.0%
! TCTTTCAAGTGATCATTCTT+TGG - chr4_1:3830354-3830373 None:intergenic 30.0%
GAATGATCACTTGAAAGAAT+TGG + chr4_1:3830356-3830375 Msa0529960:CDS 30.0%
TCTATTCAATCTGTTGTTCA+TGG + chr4_1:3830432-3830451 Msa0529960:CDS 30.0%
CATATAATAGGATGAGATGT+TGG + chr4_1:3830603-3830622 Msa0529960:intron 30.0%
!! TTGTAGTTGATGAATCGTAT+TGG + chr4_1:3830746-3830765 Msa0529960:CDS 30.0%
GTAGTGAATTAATCAAACCT+TGG - chr4_1:3830797-3830816 None:intergenic 30.0%
TGTTCTATCTCTATTAGAGA+CGG + chr4_1:3830888-3830907 Msa0529960:three_prime_UTR 30.0%
TCTCTAAATTCTGTCTCTAA+AGG - chr4_1:3830960-3830979 None:intergenic 30.0%
ACCAAATTAAACAATCGTTC+AGG + chr4_1:3831158-3831177 Msa0529960:three_prime_UTR 30.0%
! TTGCTTCTTCTAAATGGATT+AGG - chr4_1:3831547-3831566 None:intergenic 30.0%
TCCATTTAGAAGAAGCAAAA+AGG + chr4_1:3831549-3831568 Msa0529960:three_prime_UTR 30.0%
! TCCTTTTTGCTTCTTCTAAA+TGG - chr4_1:3831553-3831572 None:intergenic 30.0%
TTAGAAGAAGCAAAAAGGAA+TGG + chr4_1:3831554-3831573 Msa0529960:three_prime_UTR 30.0%
TAGAAGAAGCAAAAAGGAAT+GGG + chr4_1:3831555-3831574 Msa0529960:three_prime_UTR 30.0%
GAGTATACTAAAGAATACGA+TGG + chr4_1:3831665-3831684 Msa0529960:three_prime_UTR 30.0%
TATACTAAAGAATACGATGG+AGG + chr4_1:3831668-3831687 Msa0529960:three_prime_UTR 30.0%
TTACCAAGAATATAGCTTCA+GGG - chr4_1:3831833-3831852 None:intergenic 30.0%
ATTACCAAGAATATAGCTTC+AGG - chr4_1:3831834-3831853 None:intergenic 30.0%
! TTGTTATTGACCCAAAATCA+AGG + chr4_1:3831859-3831878 Msa0529960:intron 30.0%
!! TGTTTTTGTGTGAGTTTTAG+AGG + chr4_1:3832121-3832140 Msa0529960:intron 30.0%
GATAATTGTTTCAATCACCT+TGG - chr4_1:3832303-3832322 None:intergenic 30.0%
TGATGGAAACAATCATGATT+TGG + chr4_1:3832333-3832352 Msa0529960:intron 30.0%
TTAAAGTAACTAGGTCAGTA+AGG - chr4_1:3832428-3832447 None:intergenic 30.0%
GAACCAAGTTAATCTCAAAA+GGG - chr4_1:3832606-3832625 None:intergenic 30.0%
TGAACCAAGTTAATCTCAAA+AGG - chr4_1:3832607-3832626 None:intergenic 30.0%
GAACCTAGTTAATCTCAAAA+GGG - chr4_1:3832658-3832677 None:intergenic 30.0%
TGAACCTAGTTAATCTCAAA+AGG - chr4_1:3832659-3832678 None:intergenic 30.0%
! AGCATTTTTGCAAATTAGTC+TGG - chr4_1:3832754-3832773 None:intergenic 30.0%
! TTGGTCTCTTTTTCTAGATT+TGG + chr4_1:3833053-3833072 Msa0529960:three_prime_UTR 30.0%
!! AGATTTGGCAATATTTTGGA+CGG + chr4_1:3833068-3833087 Msa0529960:three_prime_UTR 30.0%
GATGAAATGTTATCATAGGC+AGG - chr4_1:3829985-3830004 None:intergenic 35.0%
GATAACATTTCATCAGTCTC+CGG + chr4_1:3829991-3830010 Msa0529960:CDS 35.0%
AAAGAGGTTACACTGTTAGA+GGG + chr4_1:3830085-3830104 Msa0529960:CDS 35.0%
AAATTTGCATACCTGGGTTT+CGG - chr4_1:3830116-3830135 None:intergenic 35.0%
GATCACTTGAAAGAATTGGA+AGG + chr4_1:3830360-3830379 Msa0529960:CDS 35.0%
AAAATTCCTTACAGGGTTGT+CGG - chr4_1:3830493-3830512 None:intergenic 35.0%
CAACATCTCTACTCGTATTT+GGG - chr4_1:3830729-3830748 None:intergenic 35.0%
ACAACATCTCTACTCGTATT+TGG - chr4_1:3830730-3830749 None:intergenic 35.0%
ATTAGAGACGGAATTAGAGA+TGG + chr4_1:3830900-3830919 Msa0529960:three_prime_UTR 35.0%
TGGAATATAATTGGCTGAGA+CGG + chr4_1:3830920-3830939 Msa0529960:three_prime_UTR 35.0%
! TGTAGTGAACGCTTCATTTT+GGG - chr4_1:3831139-3831158 None:intergenic 35.0%
GCCTGAACGATTGTTTAATT+TGG - chr4_1:3831162-3831181 None:intergenic 35.0%
!!! TTATCGATGGTGGACATTTT+TGG - chr4_1:3831184-3831203 None:intergenic 35.0%
TTAAGGTTAGGGTTCATTTG+GGG - chr4_1:3831229-3831248 None:intergenic 35.0%
CTTAAGGTTAGGGTTCATTT+GGG - chr4_1:3831230-3831249 None:intergenic 35.0%
ACTTAAGGTTAGGGTTCATT+TGG - chr4_1:3831231-3831250 None:intergenic 35.0%
TAGAGAAGGACTTAAGGTTA+GGG - chr4_1:3831240-3831259 None:intergenic 35.0%
ATAGAGAAGGACTTAAGGTT+AGG - chr4_1:3831241-3831260 None:intergenic 35.0%
TTGCAATAGAGAAGGACTTA+AGG - chr4_1:3831246-3831265 None:intergenic 35.0%
!! GATGGATTTTGCAATAGAGA+AGG - chr4_1:3831254-3831273 None:intergenic 35.0%
AGCGAATCTTTAGCGAATAT+TGG + chr4_1:3831309-3831328 Msa0529960:three_prime_UTR 35.0%
TTTGGCTGTTGTACAAACAA+TGG - chr4_1:3831503-3831522 None:intergenic 35.0%
AGAAGAAGCAAAAAGGAATG+GGG + chr4_1:3831556-3831575 Msa0529960:three_prime_UTR 35.0%
! AGAAGAAGAGATCTGAAACA+AGG + chr4_1:3831617-3831636 Msa0529960:three_prime_UTR 35.0%
! GAAGAAGAGATCTGAAACAA+GGG + chr4_1:3831618-3831637 Msa0529960:three_prime_UTR 35.0%
TGAAGTGTGAAGCTAAACTT+AGG + chr4_1:3831791-3831810 Msa0529960:intron 35.0%
GAAGTGTGAAGCTAAACTTA+GGG + chr4_1:3831792-3831811 Msa0529960:intron 35.0%
! GCAACTATTATGTTTGAGAC+CGG + chr4_1:3831890-3831909 Msa0529960:intron 35.0%
!! GTGCTGATTAGTAACTTCAT+TGG + chr4_1:3831992-3832011 Msa0529960:intron 35.0%
CAGTAAGGAAATGGTAACTT+GGG - chr4_1:3832413-3832432 None:intergenic 35.0%
TCAGTAAGGAAATGGTAACT+TGG - chr4_1:3832414-3832433 None:intergenic 35.0%
TAACTAGGTCAGTAAGGAAA+TGG - chr4_1:3832422-3832441 None:intergenic 35.0%
!!! AAGCCCTTTTGAGATTAACT+TGG + chr4_1:3832600-3832619 Msa0529960:three_prime_UTR 35.0%
!!! AAGCCCTTTTGAGATTAACT+AGG + chr4_1:3832600-3832619 Msa0529960:three_prime_UTR 35.0%
GATTAAAGATGATGAGTACG+AGG + chr4_1:3832786-3832805 Msa0529960:three_prime_UTR 35.0%
ACATTGGAGACATCTTAAGA+TGG + chr4_1:3832847-3832866 Msa0529960:three_prime_UTR 35.0%
ACAATACAAAGTCCAGCAAA+GGG + chr4_1:3832873-3832892 Msa0529960:three_prime_UTR 35.0%
!! GATTTGGCAATATTTTGGAC+GGG + chr4_1:3833069-3833088 Msa0529960:three_prime_UTR 35.0%
!! ATTTGGCAATATTTTGGACG+GGG + chr4_1:3833070-3833089 Msa0529960:three_prime_UTR 35.0%
CAACAAAGTCACTAAAGTTG+TGG - chr4_1:3833221-3833240 None:intergenic 35.0%
GGAAGATAGATGCTTCTTGT+TGG - chr4_1:3829840-3829859 None:intergenic 40.0%
CACTGGAAAAGAAAGACCAA+TGG - chr4_1:3829896-3829915 None:intergenic 40.0%
GGTGGATGAGAAATTAACAC+TGG - chr4_1:3829913-3829932 None:intergenic 40.0%
!! TTGGCTTGTCAAACTTCTCT+TGG + chr4_1:3830062-3830081 Msa0529960:CDS 40.0%
GTCAAACTTCTCTTGGAAAG+AGG + chr4_1:3830069-3830088 Msa0529960:CDS 40.0%
GAAAGAGGTTACACTGTTAG+AGG + chr4_1:3830084-3830103 Msa0529960:CDS 40.0%
AGAGAGGCTAACTTTGCATA+AGG + chr4_1:3830389-3830408 Msa0529960:CDS 40.0%
TTCTTTGTTCCATTCACTGC+TGG - chr4_1:3830631-3830650 None:intergenic 40.0%
GTTGTGTTCACTTCATCGAT+TGG + chr4_1:3830688-3830707 Msa0529960:CDS 40.0%
! GTTCACTTCATCGATTGGAA+CGG + chr4_1:3830693-3830712 Msa0529960:CDS 40.0%
ATCGATTGGAACGGTCTATA+TGG + chr4_1:3830702-3830721 Msa0529960:CDS 40.0%
AGAAAAATCCTGAACACCGA+CGG + chr4_1:3830848-3830867 Msa0529960:three_prime_UTR 40.0%
AATCCGTCTCTAAATTCCGT+CGG - chr4_1:3830867-3830886 None:intergenic 40.0%
GAGACGGAAAATGTTACTGA+CGG - chr4_1:3830992-3831011 None:intergenic 40.0%
!! GACGGATTAATTCAGTCTCT+GGG - chr4_1:3831074-3831093 None:intergenic 40.0%
!! AGACGGATTAATTCAGTCTC+TGG - chr4_1:3831075-3831094 None:intergenic 40.0%
! GTGTAGTGAACGCTTCATTT+TGG - chr4_1:3831140-3831159 None:intergenic 40.0%
CTTTCAGTGTTTATCGATGG+TGG - chr4_1:3831194-3831213 None:intergenic 40.0%
GAGCTTTCAGTGTTTATCGA+TGG - chr4_1:3831197-3831216 None:intergenic 40.0%
TAAGGTTAGGGTTCATTTGG+GGG - chr4_1:3831228-3831247 None:intergenic 40.0%
TCTGAACAACATCAACTGAG+TGG + chr4_1:3831398-3831417 Msa0529960:three_prime_UTR 40.0%
CTGAACAACATCAACTGAGT+GGG + chr4_1:3831399-3831418 Msa0529960:three_prime_UTR 40.0%
TGTTTGTACAACAGCCAAAG+AGG + chr4_1:3831504-3831523 Msa0529960:intron 40.0%
!! CACAGCTTTGAATTCCTCTT+TGG - chr4_1:3831521-3831540 None:intergenic 40.0%
! GTTCCTGTTTCTTCGTCAAT+GGG - chr4_1:3831586-3831605 None:intergenic 40.0%
! AGTTCCTGTTTCTTCGTCAA+TGG - chr4_1:3831587-3831606 None:intergenic 40.0%
CTGAAACAAGGGAACTCATT+TGG + chr4_1:3831629-3831648 Msa0529960:three_prime_UTR 40.0%
TGACCCTGAAGCTATATTCT+TGG + chr4_1:3831827-3831846 Msa0529960:intron 40.0%
AACATCAATCTGAACGCTAC+CGG - chr4_1:3831912-3831931 None:intergenic 40.0%
TGTCTACTACTTGAACTCCA+AGG + chr4_1:3832283-3832302 Msa0529960:intron 40.0%
AAGATGAAGAGTGAATGCCT+TGG + chr4_1:3832822-3832841 Msa0529960:three_prime_UTR 40.0%
AGATGAAGAGTGAATGCCTT+GGG + chr4_1:3832823-3832842 Msa0529960:three_prime_UTR 40.0%
GACAATACAAAGTCCAGCAA+AGG + chr4_1:3832872-3832891 Msa0529960:three_prime_UTR 40.0%
!! CAATATTTTGGACGGGGAAA+TGG + chr4_1:3833076-3833095 Msa0529960:three_prime_UTR 40.0%
! AAACGGGTATTCTAGCTGAT+TGG + chr4_1:3833123-3833142 Msa0529960:three_prime_UTR 40.0%
! AACGGGTATTCTAGCTGATT+GGG + chr4_1:3833124-3833143 Msa0529960:three_prime_UTR 40.0%
CGCGACAAATTTGCATACCT+GGG - chr4_1:3830122-3830141 None:intergenic 45.0%
TCGCGACAAATTTGCATACC+TGG - chr4_1:3830123-3830142 None:intergenic 45.0%
AATTGGAAGGAGCAAGAGAG+AGG + chr4_1:3830373-3830392 Msa0529960:CDS 45.0%
TCTGTTGTTCATGGTTGCCA+TGG + chr4_1:3830441-3830460 Msa0529960:CDS 45.0%
!! AGAGCATTGCAAGAACACCA+AGG + chr4_1:3830777-3830796 Msa0529960:CDS 45.0%
! TCTAAATTCCGTCGGTGTTC+AGG - chr4_1:3830859-3830878 None:intergenic 45.0%
ACACCGACGGAATTTAGAGA+CGG + chr4_1:3830861-3830880 Msa0529960:three_prime_UTR 45.0%
! GTCAGAGACGGATTTAGAGA+CGG - chr4_1:3831008-3831027 None:intergenic 45.0%
ATCAACAACACGAAGCTCTC+CGG + chr4_1:3831271-3831290 Msa0529960:three_prime_UTR 45.0%
TCGCTAAAGATTCGCTTGCA+GGG - chr4_1:3831305-3831324 None:intergenic 45.0%
TTCGCTAAAGATTCGCTTGC+AGG - chr4_1:3831306-3831325 None:intergenic 45.0%
CTTTAGCGAATATTGGCGAG+TGG + chr4_1:3831316-3831335 Msa0529960:three_prime_UTR 45.0%
ACACCCATTGACGAAGAAAC+AGG + chr4_1:3831580-3831599 Msa0529960:three_prime_UTR 45.0%
GTGTGAAGCTAAACTTAGGG+TGG + chr4_1:3831795-3831814 Msa0529960:intron 45.0%
GGCTGATTGAGAATGTGTCA+AGG + chr4_1:3832013-3832032 Msa0529960:intron 45.0%
! GGAAATGGTAACTTGGGTTG+TGG - chr4_1:3832407-3832426 None:intergenic 45.0%
AAGATGATGAGTACGAGGTG+TGG + chr4_1:3832791-3832810 Msa0529960:three_prime_UTR 45.0%
GATGAAGAGTGAATGCCTTG+GGG + chr4_1:3832824-3832843 Msa0529960:three_prime_UTR 45.0%
TCAGCAAATTGCCCAGCAAA+CGG + chr4_1:3833106-3833125 Msa0529960:three_prime_UTR 45.0%
AGCTAGAATACCCGTTTGCT+GGG - chr4_1:3833120-3833139 None:intergenic 45.0%
!! CTGGCGGGTTTATAGCTTCT+TGG + chr4_1:3830043-3830062 Msa0529960:CDS 50.0%
ATGTTGGAGCCAGCAGTGAA+TGG + chr4_1:3830619-3830638 Msa0529960:CDS 50.0%
!! GCTTCATTTTGGGAGCCTAC+GGG - chr4_1:3831129-3831148 None:intergenic 50.0%
!! CGCTTCATTTTGGGAGCCTA+CGG - chr4_1:3831130-3831149 None:intergenic 50.0%
! GGAGAGCTTCGTGTTGTTGA+TGG - chr4_1:3831272-3831291 None:intergenic 50.0%
CGCTAAAGATTCGCTTGCAG+GGG - chr4_1:3831304-3831323 None:intergenic 50.0%
AACACGGACACAGAGAGAGT+TGG - chr4_1:3832459-3832478 None:intergenic 50.0%
AGTGAATGCCTTGGGGACAT+TGG + chr4_1:3832831-3832850 Msa0529960:three_prime_UTR 50.0%
AGATGTCTCCAATGTCCCCA+AGG - chr4_1:3832842-3832861 None:intergenic 50.0%
CACTAGCAATCACCCTTTGC+TGG - chr4_1:3832888-3832907 None:intergenic 50.0%
CAGCAAATTGCCCAGCAAAC+GGG + chr4_1:3833107-3833126 Msa0529960:three_prime_UTR 50.0%
CAGCTAGAATACCCGTTTGC+TGG - chr4_1:3833121-3833140 None:intergenic 50.0%
!! ACACACGGTTTGGTCGCTAC+CGG - chr4_1:3830013-3830032 None:intergenic 55.0%
GACCAAACCGTGTGTGTCAC+CGG + chr4_1:3830018-3830037 Msa0529960:CDS 55.0%
AGCTATAAACCCGCCAGCAC+CGG - chr4_1:3830040-3830059 None:intergenic 55.0%
AGGCTGTGTGGAACACACCA+TGG - chr4_1:3830461-3830480 None:intergenic 55.0%
CTTACAGGGTTGTCGGTGAC+AGG - chr4_1:3830486-3830505 None:intergenic 55.0%
CTGTCACCGACAACCCTGTA+AGG + chr4_1:3830484-3830503 Msa0529960:intron 55.0%
AGGGTTCATTTGGGGGAGGA+GGG - chr4_1:3831221-3831240 None:intergenic 55.0%
TAGGGTTCATTTGGGGGAGG+AGG - chr4_1:3831222-3831241 None:intergenic 55.0%
GGTTAGGGTTCATTTGGGGG+AGG - chr4_1:3831225-3831244 None:intergenic 55.0%
! CGCTTGCAGGGGTATGATTC+CGG - chr4_1:3831293-3831312 None:intergenic 55.0%
! CGGACACAGAGAGAGTTGGT+TGG - chr4_1:3832455-3832474 None:intergenic 55.0%
CACCGGTGACACACACGGTT+TGG - chr4_1:3830023-3830042 None:intergenic 60.0%
AGAGGGACTGTCCGAAACCC+AGG + chr4_1:3830102-3830121 Msa0529960:CDS 60.0%
AGGGTTGTCGGTGACAGGAG+AGG - chr4_1:3830481-3830500 None:intergenic 60.0%
ACCGTGTGTGTCACCGGTGC+TGG + chr4_1:3830024-3830043 Msa0529960:CDS 65.0%
!! GCCAGCACCGGTGACACACA+CGG - chr4_1:3830028-3830047 None:intergenic 65.0%
! GTGTGTGTCACCGGTGCTGG+CGG + chr4_1:3830027-3830046 Msa0529960:CDS 65.0%
!! TGTGTGTCACCGGTGCTGGC+GGG + chr4_1:3830028-3830047 Msa0529960:CDS 65.0%
CGGTGACAGGAGAGGCTGTG+TGG - chr4_1:3830473-3830492 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 3829826 3833303 3829826 ID=Msa0529960;Name=Msa0529960
chr4_1 mRNA 3829826 3833303 3829826 ID=Msa0529960-mRNA-1;Parent=Msa0529960;Name=Msa0529960-mRNA-1;_AED=0.15;_eAED=0.15;_QI=153|1|1|1|0.5|0.4|5|1708|163
chr4_1 exon 3829826 3830123 3829826 ID=Msa0529960-mRNA-1:exon:1125;Parent=Msa0529960-mRNA-1
chr4_1 exon 3830346 3830500 3830346 ID=Msa0529960-mRNA-1:exon:1126;Parent=Msa0529960-mRNA-1
chr4_1 exon 3830613 3831420 3830613 ID=Msa0529960-mRNA-1:exon:1127;Parent=Msa0529960-mRNA-1
chr4_1 exon 3831518 3831689 3831518 ID=Msa0529960-mRNA-1:exon:1128;Parent=Msa0529960-mRNA-1
chr4_1 exon 3832384 3833303 3832384 ID=Msa0529960-mRNA-1:exon:1129;Parent=Msa0529960-mRNA-1
chr4_1 five_prime_UTR 3829826 3829978 3829826 ID=Msa0529960-mRNA-1:five_prime_utr;Parent=Msa0529960-mRNA-1
chr4_1 CDS 3829979 3830123 3829979 ID=Msa0529960-mRNA-1:cds;Parent=Msa0529960-mRNA-1
chr4_1 CDS 3830346 3830500 3830346 ID=Msa0529960-mRNA-1:cds;Parent=Msa0529960-mRNA-1
chr4_1 CDS 3830613 3830804 3830613 ID=Msa0529960-mRNA-1:cds;Parent=Msa0529960-mRNA-1
chr4_1 three_prime_UTR 3830805 3831420 3830805 ID=Msa0529960-mRNA-1:three_prime_utr;Parent=Msa0529960-mRNA-1
chr4_1 three_prime_UTR 3831518 3831689 3831518 ID=Msa0529960-mRNA-1:three_prime_utr;Parent=Msa0529960-mRNA-1
chr4_1 three_prime_UTR 3832384 3833303 3832384 ID=Msa0529960-mRNA-1:three_prime_utr;Parent=Msa0529960-mRNA-1
Gene Sequence

>Msa0529960

ATGCCTGCCTATGATAACATTTCATCAGTCTCCGGTAGCGACCAAACCGTGTGTGTCACCGGTGCTGGCGGGTTTATAGCTTCTTGGCTTGTCAAACTTCTCTTGGAAAGAGGTTACACTGTTAGAGGGACTGTCCGAAACCCAGAGGATCCAAAGAATGATCACTTGAAAGAATTGGAAGGAGCAAGAGAGAGGCTAACTTTGCATAAGGTTGATCTTCTTGATCTTCAATCTATTCAATCTGTTGTTCATGGTTGCCATGGTGTGTTCCACACAGCCTCTCCTGTCACCGACAACCCTGATGAGATGTTGGAGCCAGCAGTGAATGGAACAAAGAATGTGATTATAGCGTCTGCTGAAGCAAAAGTGCGACGTGTTGTGTTCACTTCATCGATTGGAACGGTCTATATGGACCCAAATACGAGTAGAGATGTTGTAGTTGATGAATCGTATTGGAGTGATTTAGAGCATTGCAAGAACACCAAGGTTTGA
Protein sequence

>Msa0529960

MPAYDNISSVSGSDQTVCVTGAGGFIASWLVKLLLERGYTVRGTVRNPEDPKNDHLKELEGARERLTLHKVDLLDLQSIQSVVHGCHGVFHTASPVTDNPDEMLEPAVNGTKNVIIASAEAKVRRVVFTSSIGTVYMDPNTSRDVVVDESYWSDLEHCKNTKV*