AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1461370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1461370 MtrunA17_Chr8g0380651 100.000 269 0 0 239 507 321 589 0.0 541
Msa1461370 MtrunA17_Chr8g0380651 98.174 219 4 0 1 219 1 219 4.91e-159 464
Msa1461370 MtrunA17_Chr2g0277491 95.539 269 12 0 239 507 315 583 1.11e-161 471
Msa1461370 MtrunA17_Chr2g0277491 83.168 202 32 1 18 219 14 213 2.37e-121 367
Msa1461370 MtrunA17_Chr5g0434001 43.123 269 153 0 239 507 339 607 1.46e-71 239
Msa1461370 MtrunA17_Chr5g0434001 37.321 209 120 5 22 223 38 242 3.00e-40 153
Msa1461370 MtrunA17_Chr8g0375501 43.494 269 152 0 239 507 323 591 6.89e-67 226
Msa1461370 MtrunA17_Chr8g0375501 36.818 220 128 5 11 223 11 226 3.79e-41 155
Msa1461370 MtrunA17_Chr6g0480551 43.123 269 153 0 239 507 320 588 2.38e-66 224
Msa1461370 MtrunA17_Chr6g0480551 34.389 221 136 4 8 223 7 223 5.17e-38 147
Msa1461370 MtrunA17_Chr8g0342031 37.546 269 167 1 239 507 381 648 1.16e-61 213
Msa1461370 MtrunA17_Chr3g0136881 37.175 269 168 1 239 507 369 636 2.28e-58 204
Msa1461370 MtrunA17_Chr1g0150181 37.175 269 168 1 239 507 370 637 1.02e-56 199
Msa1461370 MtrunA17_Chr1g0150181 24.719 267 137 7 5 211 4 266 5.79e-16 80.9
Msa1461370 MtrunA17_Chr4g0065301 35.870 276 164 6 239 507 387 656 2.20e-43 163
Msa1461370 MtrunA17_Chr4g0026371 31.250 272 180 3 239 507 322 589 3.26e-41 155
Msa1461370 MtrunA17_Chr4g0026371 38.000 200 114 4 18 210 20 216 8.34e-35 137
Msa1461370 MtrunA17_Chr5g0448371 36.264 273 166 5 239 507 397 665 1.33e-38 149
Msa1461370 MtrunA17_Chr3g0120461 36.131 274 165 6 239 507 391 659 5.71e-37 144
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1461370 AT1G10950.1 94.796 269 14 0 239 507 321 589 2.85e-162 473
Msa1461370 AT1G10950.1 77.723 202 43 1 18 219 20 219 7.96e-117 357
Msa1461370 AT1G08350.3 29.720 572 312 8 22 507 22 589 3.76e-82 266
Msa1461370 AT1G08350.2 29.720 572 312 8 22 507 22 589 3.76e-82 266
Msa1461370 AT5G37310.1 45.588 272 142 3 239 507 325 593 1.49e-70 236
Msa1461370 AT5G37310.1 33.929 224 137 5 7 223 9 228 2.09e-37 145
Msa1461370 AT5G37310.2 45.588 272 142 3 239 507 325 593 1.49e-70 236
Msa1461370 AT5G37310.2 33.929 224 137 5 7 223 9 228 2.09e-37 145
Msa1461370 AT2G01970.1 43.494 269 152 0 239 507 324 592 5.42e-68 229
Msa1461370 AT2G01970.1 37.019 208 121 5 22 223 24 227 4.99e-41 155
Msa1461370 AT1G14670.1 44.981 269 148 0 239 507 324 592 1.19e-64 220
Msa1461370 AT1G14670.1 37.019 208 121 5 22 223 24 227 3.79e-40 153
Msa1461370 AT1G08350.4 28.244 524 277 8 22 459 22 532 3.26e-63 215
Msa1461370 AT1G08350.1 27.308 509 283 7 85 507 1 508 5.04e-62 211
Msa1461370 AT3G13772.1 37.175 269 168 1 239 507 374 641 8.18e-60 208
Msa1461370 AT1G55130.1 37.175 269 168 1 239 507 370 637 1.54e-59 207
Msa1461370 AT5G10840.1 36.431 269 170 1 239 507 381 648 1.39e-56 199
Msa1461370 AT5G25100.2 37.037 270 167 2 239 507 384 651 3.10e-56 199
Msa1461370 AT5G25100.1 37.037 270 167 2 239 507 377 644 3.12e-56 199
Msa1461370 AT2G24170.1 37.410 278 169 2 234 507 361 637 9.90e-55 194
Msa1461370 AT5G35160.1 36.232 276 163 6 239 507 361 630 1.23e-38 149
Msa1461370 AT5G35160.2 36.232 276 163 6 239 507 389 658 1.36e-38 149
Msa1461370 AT5G35160.3 36.232 276 163 6 239 507 389 658 1.36e-38 149
Msa1461370 AT5G35160.4 36.232 276 163 6 239 507 389 658 1.36e-38 149
Msa1461370 AT4G12650.1 34.799 273 170 5 239 507 384 652 2.96e-34 137

Find 175 sgRNAs with CRISPR-Local

Find 449 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGTGGTCTTGGTGAGGTTC+TGG 0.126257 tig0041444:+10176 Msa1461370:CDS
TTCCAAACCAGCTTCTATTT+TGG 0.163890 tig0041444:+14171 Msa1461370:CDS
TCTTTCCCTCTTGCACTTCT+TGG 0.167961 tig0041444:+13552 Msa1461370:CDS
AACACTATTGCTATATTCTA+TGG 0.173192 tig0041444:+13468 Msa1461370:CDS
TTTACACGACATGGATTATT+TGG 0.174871 tig0041444:-13606 None:intergenic
GCTCTCACATCGTTCATTTC+TGG 0.180300 tig0041444:+13224 Msa1461370:CDS
TGGGTAAATAAATATTAATT+AGG 0.186507 tig0041444:-8297 None:intergenic
GAATATAGCAATAGTGTTTA+AGG 0.196614 tig0041444:-13463 None:intergenic
GTTTCATCCCTTTATAAAAT+AGG 0.231371 tig0041444:+14673 Msa1461370:three_prime_UTR
CCATTATCGCTATGCTTATC+AGG 0.233882 tig0041444:-12137 None:intergenic
AGAAACATCAAGTGTGATTA+AGG 0.235735 tig0041444:+14414 Msa1461370:CDS
TGTTTCTTGTGGATTGTTAT+AGG 0.255200 tig0041444:-10091 None:intergenic
CCATTCATGTGCTTTGGAAT+TGG 0.255297 tig0041444:+13435 Msa1461370:CDS
TTAGGAACTTGATCTCAATT+TGG 0.256416 tig0041444:-10221 None:intergenic
TTTCCTGCCTCCACAGGCTT+TGG 0.257862 tig0041444:-12331 None:intergenic
TTCCTGCCTCCACAGGCTTT+GGG 0.275232 tig0041444:-12330 None:intergenic
GATCCTTCTCACAAACAAAT+TGG 0.295137 tig0041444:-14388 None:intergenic
GTTCCTACTAATATCACTTT+TGG 0.301532 tig0041444:+12385 Msa1461370:CDS
TTATTCCCATTCATGTGCTT+TGG 0.303113 tig0041444:+13429 Msa1461370:CDS
TGCTGGAGACAATAAATTCT+TGG 0.310005 tig0041444:+14474 Msa1461370:three_prime_UTR
GTACTAGATGGGTGGCAAAA+TGG 0.317512 tig0041444:-10132 None:intergenic
CCTGATAAGCATAGCGATAA+TGG 0.322031 tig0041444:+12137 Msa1461370:CDS
GGGTAAATAAATATTAATTA+GGG 0.324557 tig0041444:-8296 None:intergenic
GGTGGTCTTGGTGAGGTTCT+GGG 0.343914 tig0041444:+10177 Msa1461370:CDS
TTGTTCACCCAAAGGTTAAC+AGG 0.344271 tig0041444:-10060 None:intergenic
GTACAGTTGTTGGAAGAAAC+TGG 0.348979 tig0041444:+13574 Msa1461370:CDS
GTTTCTTGTGGATTGTTATA+GGG 0.350260 tig0041444:-10090 None:intergenic
GAAATGATGAATGGTGGTTT+TGG 0.352844 tig0041444:-8325 None:intergenic
CAGGTAGAATCACAGGGTTT+TGG 0.358097 tig0041444:+14538 Msa1461370:three_prime_UTR
TTCTACCTGTAAACATTGTT+AGG 0.362610 tig0041444:-14524 None:intergenic
ATTTGACATATTCTGTCAAA+TGG 0.363074 tig0041444:+12362 Msa1461370:CDS
CTTCTACTGCTGCACACAAA+TGG 0.372102 tig0041444:+10154 Msa1461370:CDS
GGAAGAAGATGGATCGGGAT+TGG 0.374431 tig0041444:-8519 None:intergenic
TTCTACTGCTGCACACAAAT+GGG 0.377902 tig0041444:+10155 Msa1461370:CDS
TTTACATTACATTGGATAGT+TGG 0.384243 tig0041444:-14744 None:intergenic
TACTAGATGGGTGGCAAAAT+GGG 0.386783 tig0041444:-10131 None:intergenic
ATGCAATAGAGAATAATTAC+TGG 0.388926 tig0041444:+10393 Msa1461370:CDS
GGGATGATCCTGTTAACCTT+TGG 0.390319 tig0041444:+10052 Msa1461370:CDS
GCACTTCTTGGTACAGTTGT+TGG 0.394046 tig0041444:+13564 Msa1461370:CDS
GGATGATCCTGTTAACCTTT+GGG 0.395177 tig0041444:+10053 Msa1461370:CDS
TCTCTAGCTGCTATCCCATT+TGG 0.398262 tig0041444:+13492 Msa1461370:CDS
TGGTGATGGATGGGTTGAAT+TGG 0.402266 tig0041444:-8486 None:intergenic
CACTTCCATAGGCTTGTTGC+TGG 0.402858 tig0041444:+14457 Msa1461370:three_prime_UTR
ATCCAAAATAGAAGCTGGTT+TGG 0.403813 tig0041444:-14173 None:intergenic
ACAACCACCATTGTGCCAAA+TGG 0.406323 tig0041444:-13507 None:intergenic
ACCTTCAGTGGTTTCTCTGA+TGG 0.407419 tig0041444:+13671 Msa1461370:CDS
TCATTTCTGGTTATGTGAGT+GGG 0.411230 tig0041444:+13237 Msa1461370:CDS
TGTGTATGGCTTTATGCTAC+TGG 0.413075 tig0041444:+13969 Msa1461370:CDS
TTGGAAGGACATGGTGGTGA+TGG 0.417335 tig0041444:-8500 None:intergenic
TGTGGAGGCAGGAAAACATT+TGG 0.417528 tig0041444:+12339 Msa1461370:CDS
TTCAGGAAATGTGGATAAAA+CGG 0.424085 tig0041444:+10322 Msa1461370:intron
ATGGGAGGACTGCTCCCCTT+TGG 0.425866 tig0041444:+13690 Msa1461370:CDS
GGGAACCTAACAATGTTTAC+AGG 0.428040 tig0041444:+14519 Msa1461370:three_prime_UTR
CAACCACCATTGTGCCAAAT+GGG 0.431622 tig0041444:-13506 None:intergenic
TTGGAACTTGAAACCATGTT+GGG 0.433221 tig0041444:-14725 None:intergenic
TTCAGATGATCTTCCTTTGT+GGG 0.433913 tig0041444:+12000 Msa1461370:intron
AGAAGAGGAAGAAGATGGAT+CGG 0.438159 tig0041444:-8525 None:intergenic
CATTGAATTGAAATGATGAA+TGG 0.443163 tig0041444:-8334 None:intergenic
TTTAATGTTTAAGGATATGT+TGG 0.444357 tig0041444:+12104 Msa1461370:intron
CCAATTCCAAAGCACATGAA+TGG 0.445296 tig0041444:-13435 None:intergenic
AAGGACATGGTGGTGATGGA+TGG 0.449505 tig0041444:-8496 None:intergenic
CTGTTTGTGTGACAATTGTC+GGG 0.453788 tig0041444:+14016 Msa1461370:CDS
CTATCCTTTCTTTGAGCACC+AGG 0.454485 tig0041444:+12432 Msa1461370:CDS
GCAGCAGTAGAAGTACTAGA+TGG 0.454588 tig0041444:-10144 None:intergenic
GGGGATGTACTCACGAAATG+GGG 0.455052 tig0041444:+13259 Msa1461370:CDS
ATTAGACATAAGTCCTTCAA+TGG 0.458310 tig0041444:-14700 None:intergenic
CCTTCAGTGGTTTCTCTGAT+GGG 0.459448 tig0041444:+13672 Msa1461370:CDS
TACCACTTCTTCTCAGGAAT+GGG 0.459819 tig0041444:-13642 None:intergenic
GCACACAAATGGGGTGGTCT+TGG 0.464078 tig0041444:+10165 Msa1461370:CDS
TGTTAAATACAATAATGATC+AGG 0.464103 tig0041444:+12193 Msa1461370:CDS
TTTGCATGTTAGGTAAAAGC+TGG 0.464576 tig0041444:+13379 Msa1461370:intron
AACCTTTGGGTGAACAAAGT+TGG 0.465024 tig0041444:+10066 Msa1461370:CDS
GTCCCAAAGCCTGTGGAGGC+AGG 0.466032 tig0041444:+12328 Msa1461370:CDS
GAAGAGGAAGAAGATGGATC+GGG 0.467833 tig0041444:-8524 None:intergenic
TTCAATAAATATGCTGCCAA+AGG 0.469394 tig0041444:-13706 None:intergenic
ATTCAGATGATCTTCCTTTG+TGG 0.469698 tig0041444:+11999 Msa1461370:intron
AAATGAAGAGAGAGAAGAAG+AGG 0.470429 tig0041444:-8540 None:intergenic
TTCCCCTCTTTACATTACAT+TGG 0.470748 tig0041444:-14752 None:intergenic
TTTGACATATTCTGTCAAAT+GGG 0.471266 tig0041444:+12363 Msa1461370:CDS
ACTGTTTGTGTGACAATTGT+CGG 0.474263 tig0041444:+14015 Msa1461370:CDS
AGGACATGGTGGTGATGGAT+GGG 0.474995 tig0041444:-8495 None:intergenic
GTGAGGTACCACTTCTTCTC+AGG 0.480937 tig0041444:-13648 None:intergenic
TACGTGAAGACAAAGATGTC+AGG 0.484733 tig0041444:+14144 Msa1461370:CDS
CGTCCAAAAGTGATATTAGT+AGG 0.488108 tig0041444:-12388 None:intergenic
CAATTCCAAAGCACATGAAT+GGG 0.488664 tig0041444:-13434 None:intergenic
TCAATAAATATGCTGCCAAA+GGG 0.491052 tig0041444:-13705 None:intergenic
AGAGAAGAAGAGGAAGAAGA+TGG 0.491368 tig0041444:-8530 None:intergenic
TAAAGAAGCTGTAAGGATCA+TGG 0.491490 tig0041444:-13409 None:intergenic
TGTCTCCAGCAACAAGCCTA+TGG 0.499255 tig0041444:-14462 None:intergenic
AAATTCTTGGAGGAAGCCTC+TGG 0.502558 tig0041444:+14487 Msa1461370:three_prime_UTR
GTTCCAATTTGTTTGTGAGA+AGG 0.502663 tig0041444:+14385 Msa1461370:CDS
CTTGGACTAGGAATTCTTTG+CGG 0.503085 tig0041444:+14213 Msa1461370:CDS
TTCATTTCTGGTTATGTGAG+TGG 0.508011 tig0041444:+13236 Msa1461370:CDS
TACTCTTATTTCAGGAAATG+TGG 0.511703 tig0041444:+10313 Msa1461370:intron
ATGTTTACAGGTAGAATCAC+AGG 0.511994 tig0041444:+14531 Msa1461370:three_prime_UTR
ACACTATTGCTATATTCTAT+GGG 0.513070 tig0041444:+13469 Msa1461370:CDS
TTAGACATAAGTCCTTCAAT+GGG 0.514965 tig0041444:-14699 None:intergenic
TATCCAATGTAATGTAAAGA+GGG 0.515433 tig0041444:+14749 Msa1461370:three_prime_UTR
TAATAATTGTATGTTTCTTG+TGG 0.516387 tig0041444:-10102 None:intergenic
TAAAATAGGAGCCCCATTGA+AGG 0.517565 tig0041444:+14687 Msa1461370:three_prime_UTR
TAATATTCTTGTGTGTGTAA+AGG 0.519006 tig0041444:-12169 None:intergenic
GAAGAGTGGAAAAGAAGGTA+AGG 0.521099 tig0041444:-8361 None:intergenic
TACTTCCTTCTGGAATTACA+AGG 0.524010 tig0041444:+13743 Msa1461370:CDS
ATTTCTGGTTATGTGAGTGG+GGG 0.527049 tig0041444:+13239 Msa1461370:CDS
TAAAGACAGTCAATTACAGC+CGG 0.528111 tig0041444:-14612 None:intergenic
TGTACCTGGTGCTCAAAGAA+AGG 0.529220 tig0041444:-12436 None:intergenic
CGTTGTTGAAGATTGAAGAG+TGG 0.530294 tig0041444:-8375 None:intergenic
AGGAAGCCTCTGGTCATGTG+TGG 0.531037 tig0041444:+14497 Msa1461370:three_prime_UTR
TTGCATCATCAAGATCCATC+TGG 0.532224 tig0041444:-10352 None:intergenic
ACGCCGCTTTGATGTCTACC+TGG 0.532449 tig0041444:+12408 Msa1461370:CDS
GGGATGTACTCACGAAATGG+GGG 0.532731 tig0041444:+13260 Msa1461370:CDS
GAAGATGGATCGGGATTGGA+AGG 0.534872 tig0041444:-8515 None:intergenic
TGCTATCCCATTTGGCACAA+TGG 0.538975 tig0041444:+13500 Msa1461370:CDS
CTGAGAACTACCACTGGCAA+TGG 0.539560 tig0041444:+14058 Msa1461370:CDS
CTATCCAATGTAATGTAAAG+AGG 0.539597 tig0041444:+14748 Msa1461370:three_prime_UTR
GTACCACTTCTTCTCAGGAA+TGG 0.539757 tig0041444:-13643 None:intergenic
TGGAGACAATAAATTCTTGG+AGG 0.539868 tig0041444:+14477 Msa1461370:three_prime_UTR
GTTGGAACTTGAAACCATGT+TGG 0.540361 tig0041444:-14726 None:intergenic
ATGGGAATAAAGAAGCTGTA+AGG 0.542673 tig0041444:-13416 None:intergenic
AGATTGAAGAGTGGAAAAGA+AGG 0.543101 tig0041444:-8366 None:intergenic
CGCTTCAGAATCAGATCACA+AGG 0.545253 tig0041444:+8573 Msa1461370:CDS
AGTGTATCCAAAATAGAAGC+TGG 0.550003 tig0041444:-14178 None:intergenic
TTCTTCTCAGGAATGGGACG+AGG 0.550039 tig0041444:-13636 None:intergenic
TTCCAATGTGCAGGAGCTGT+AGG 0.552065 tig0041444:+14354 Msa1461370:intron
CATAGCTGAGATATGCATGC+AGG 0.555382 tig0041444:-13070 None:intergenic
GGAAGCCTCTGGTCATGTGT+GGG 0.556186 tig0041444:+14498 Msa1461370:three_prime_UTR
AAAGACAGTCAATTACAGCC+GGG 0.559382 tig0041444:-14611 None:intergenic
CATTTCTGGTTATGTGAGTG+GGG 0.564790 tig0041444:+13238 Msa1461370:CDS
AAACAGGTGTACTATGTGTA+TGG 0.567409 tig0041444:+13955 Msa1461370:intron
GTCCAACTTTGTTCACCCAA+AGG 0.569033 tig0041444:-10068 None:intergenic
TTTCTGGTTATGTGAGTGGG+GGG 0.572386 tig0041444:+13240 Msa1461370:CDS
TCAAACCGGAGCACTTCCAT+AGG 0.574233 tig0041444:+14446 Msa1461370:three_prime_UTR
GTCCCATTCCTGAGAAGAAG+TGG 0.575509 tig0041444:+13640 Msa1461370:CDS
TCAGTGGTTTCTCTGATGGG+AGG 0.576830 tig0041444:+13675 Msa1461370:CDS
GTGGTACCTCACACCTTCAG+TGG 0.581121 tig0041444:+13659 Msa1461370:CDS
GTGATCTGATTCTGAAGCGA+AGG 0.581572 tig0041444:-8569 None:intergenic
CAGCAGTAGAAGTACTAGAT+GGG 0.584920 tig0041444:-10143 None:intergenic
ACAAGCCTATGGAAGTGCTC+CGG 0.585518 tig0041444:-14451 None:intergenic
GAGAGCATAACAAACAATGA+AGG 0.589483 tig0041444:-13207 None:intergenic
TGAATTGAAATGATGAATGG+TGG 0.590079 tig0041444:-8331 None:intergenic
TCAGATGATCTTCCTTTGTG+GGG 0.590359 tig0041444:+12001 Msa1461370:intron
GCTCAAAGAAAGGATAGTCC+AGG 0.607444 tig0041444:-12426 None:intergenic
ATACACATAAACTGATGTTG+AGG 0.610091 tig0041444:-14100 None:intergenic
GTTCACCTTGTAATTCCAGA+AGG 0.615446 tig0041444:-13748 None:intergenic
GATGGATCTTGATGATGCAA+AGG 0.617807 tig0041444:+10355 Msa1461370:CDS
ACGTGAAGACAAAGATGTCA+GGG 0.618435 tig0041444:+14145 Msa1461370:CDS
TTATGTCTAATTCCCCAACA+TGG 0.624747 tig0041444:+14712 Msa1461370:three_prime_UTR
TATCCCATTTGGCACAATGG+TGG 0.629550 tig0041444:+13503 Msa1461370:CDS
TCTACTGCTGCACACAAATG+GGG 0.631157 tig0041444:+10156 Msa1461370:CDS
CAAATGGGGTGGTCTTGGTG+AGG 0.631751 tig0041444:+10170 Msa1461370:CDS
GAAGCCTCTGGTCATGTGTG+GGG 0.632670 tig0041444:+14499 Msa1461370:three_prime_UTR
TCAAGATGTCCCAAAGCCTG+TGG 0.633218 tig0041444:+12321 Msa1461370:CDS
AGATGTCCCAAAGCCTGTGG+AGG 0.635079 tig0041444:+12324 Msa1461370:CDS
GGTCTTGGTGAGGTTCTGGG+TGG 0.636779 tig0041444:+10180 Msa1461370:CDS
ACTGTACCAAGAAGTGCAAG+AGG 0.641941 tig0041444:-13558 None:intergenic
ATCCAATGTAATGTAAAGAG+GGG 0.644683 tig0041444:+14750 Msa1461370:three_prime_UTR
TAAATGCTGAGAACTACCAC+TGG 0.646179 tig0041444:+14052 Msa1461370:CDS
CCCATCAGAGAAACCACTGA+AGG 0.648823 tig0041444:-13672 None:intergenic
AAGACAGTCAATTACAGCCG+GGG 0.650653 tig0041444:-14610 None:intergenic
CAGTAGAAGTACTAGATGGG+TGG 0.656556 tig0041444:-10140 None:intergenic
CAATAAATATGCTGCCAAAG+GGG 0.656961 tig0041444:-13704 None:intergenic
TGGAACTTGAAACCATGTTG+GGG 0.661336 tig0041444:-14724 None:intergenic
TGTTTACAGGTAGAATCACA+GGG 0.661513 tig0041444:+14532 Msa1461370:three_prime_UTR
GGATCGGGATTGGAAGGACA+TGG 0.668832 tig0041444:-8509 None:intergenic
TGTCACACAAACAGTAACGA+TGG 0.672279 tig0041444:-14007 None:intergenic
GGTTCCCCACACATGACCAG+AGG 0.672489 tig0041444:-14503 None:intergenic
ACTGCTGCACACAAATGGGG+TGG 0.678345 tig0041444:+10159 Msa1461370:CDS
AGAAAGACGTCCATTGCCAG+TGG 0.681900 tig0041444:-14068 None:intergenic
CTGTACCAAGAAGTGCAAGA+GGG 0.682888 tig0041444:-13557 None:intergenic
GAGAAACCACTGAAGGTGTG+AGG 0.685299 tig0041444:-13665 None:intergenic
GTTCTAGGCATACCCCACAA+AGG 0.694278 tig0041444:-12013 None:intergenic
TCGGGATTGGAAGGACATGG+TGG 0.702018 tig0041444:-8506 None:intergenic
TAGACATAAGTCCTTCAATG+GGG 0.748274 tig0041444:-14698 None:intergenic
GTTGTTGGAAGAAACTGGAG+TGG 0.756109 tig0041444:+13579 Msa1461370:CDS
AGTCCAGGTAGACATCAAAG+CGG 0.788919 tig0041444:-12411 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTATTTTTAAAAAAAA+TGG - tig0041444:12464-12483 None:intergenic 0.0%
!! GGGTAAATAAATATTAATTA+GGG - tig0041444:8299-8318 None:intergenic 15.0%
!! TGGGTAAATAAATATTAATT+AGG - tig0041444:8300-8319 None:intergenic 15.0%
!! TATTATTGAAAAATTTCGAA+CGG + tig0041444:9288-9307 Msa1461370:intron 15.0%
!! TGTCAAAATAAAAAACTTAA+GGG - tig0041444:9383-9402 None:intergenic 15.0%
!! TTGTCAAAATAAAAAACTTA+AGG - tig0041444:9384-9403 None:intergenic 15.0%
!!! AAAACCAAGTTTTTAAATAT+TGG + tig0041444:9403-9422 Msa1461370:intron 15.0%
!! TAATCCAATATTTAAAAACT+TGG - tig0041444:9410-9429 None:intergenic 15.0%
!!! TTTTAACTTTTTAGCTAATT+AGG + tig0041444:9569-9588 Msa1461370:intron 15.0%
!! TTAAAAGTTACAACTAATTA+AGG - tig0041444:9888-9907 None:intergenic 15.0%
!!! AATACATCCTTTTAAAAAAA+TGG - tig0041444:10011-10030 None:intergenic 15.0%
!! TGTAAAATAATTCATTCAAT+TGG - tig0041444:10722-10741 None:intergenic 15.0%
!!! ATTTTATCTGTTCTTATTTA+TGG + tig0041444:12730-12749 Msa1461370:intron 15.0%
!!! TTAGAAAAACATAATTTTCT+AGG - tig0041444:12773-12792 None:intergenic 15.0%
!!! AATTGGTTTTATGAATGTTA+TGG + tig0041444:8723-8742 Msa1461370:intron 20.0%
!!! TTGTTATTATTTAGTGATCT+TGG + tig0041444:8902-8921 Msa1461370:intron 20.0%
!!! AATCCTGTTTATTTACTTTT+TGG + tig0041444:9212-9231 Msa1461370:intron 20.0%
!! ATTATTGAAAAATTTCGAAC+GGG + tig0041444:9289-9308 Msa1461370:intron 20.0%
!!! TATCATATTTAAAACTTCCA+TGG - tig0041444:9613-9632 None:intergenic 20.0%
!! TATAACTTTACTTACTCTAT+AGG + tig0041444:9839-9858 Msa1461370:intron 20.0%
!!! TTATTTTATTGCAGTATCAA+CGG + tig0041444:10031-10050 Msa1461370:intron 20.0%
!! TAATAATTGTATGTTTCTTG+TGG - tig0041444:10105-10124 None:intergenic 20.0%
!! TAAATAATATTTCCTTTCAG+AGG + tig0041444:10666-10685 Msa1461370:intron 20.0%
!! TCAAAACAAATAAATTATCG+AGG + tig0041444:10997-11016 Msa1461370:intron 20.0%
!! TGAAAACTAATAAGTTATCT+AGG - tig0041444:11231-11250 None:intergenic 20.0%
!! TTGATTATAATAGGACATTA+TGG + tig0041444:11319-11338 Msa1461370:intron 20.0%
!!! TAAATTTAAAACAAGGAATG+AGG - tig0041444:11875-11894 None:intergenic 20.0%
!! TTTAATGTTTAAGGATATGT+TGG + tig0041444:12104-12123 Msa1461370:intron 20.0%
!! TGTTAAATACAATAATGATC+AGG + tig0041444:12193-12212 Msa1461370:CDS 20.0%
!!! TTTGAAGTTTTTTTTTTGTG+TGG + tig0041444:13293-13312 Msa1461370:intron 20.0%
!!! ACTATTTTTATTTGCATGTT+AGG + tig0041444:13369-13388 Msa1461370:intron 20.0%
!!! ATCAAATTCCTTTTATTTGT+TGG + tig0041444:13796-13815 Msa1461370:intron 20.0%
!!! TAAGTCATTTTTCTTGATAA+AGG - tig0041444:13845-13864 None:intergenic 20.0%
!! AAGAAAAATGACTTAGATAA+TGG + tig0041444:13850-13869 Msa1461370:intron 20.0%
!!! GTGTATTCTTTTTCTATATT+GGG + tig0041444:14569-14588 Msa1461370:three_prime_UTR 20.0%
!!! TGTATTCTTTTTCTATATTG+GGG + tig0041444:14570-14589 Msa1461370:three_prime_UTR 20.0%
! CATTGAATTGAAATGATGAA+TGG - tig0041444:8337-8356 None:intergenic 25.0%
!!! GGTTTTTGTTTGTATAATGT+AGG + tig0041444:8789-8808 Msa1461370:intron 25.0%
! GAACCAAAAAGTAAATAAAC+AGG - tig0041444:9218-9237 None:intergenic 25.0%
! TCAGTTAATATTGAGTTAGA+CGG - tig0041444:9515-9534 None:intergenic 25.0%
! ATCTTAATTGCATTCTACTT+TGG + tig0041444:9545-9564 Msa1461370:intron 25.0%
!! TCAACTGTTTAATTTATTGC+TGG - tig0041444:9682-9701 None:intergenic 25.0%
! TTGTAAGCTAATAGATATAG+GGG - tig0041444:9916-9935 None:intergenic 25.0%
! GTTGTAAGCTAATAGATATA+GGG - tig0041444:9917-9936 None:intergenic 25.0%
!!! ATGGCTTCCATTTTTTTAAA+AGG + tig0041444:10001-10020 Msa1461370:intron 25.0%
!! TATTTTATTGCAGTATCAAC+GGG + tig0041444:10032-10051 Msa1461370:intron 25.0%
!! TTAACGAATACTCTTATTTC+AGG + tig0041444:10305-10324 Msa1461370:intron 25.0%
! ATGCAATAGAGAATAATTAC+TGG + tig0041444:10393-10412 Msa1461370:CDS 25.0%
!!! TTACTGGTTTGAATTTTTCA+TGG + tig0041444:10409-10428 Msa1461370:CDS 25.0%
!!! TACTGGTTTGAATTTTTCAT+GGG + tig0041444:10410-10429 Msa1461370:CDS 25.0%
! ATTATTTACACCAACTTCTA+TGG - tig0041444:10654-10673 None:intergenic 25.0%
! TCAGTTTCAAGACTTATTTA+TGG + tig0041444:10864-10883 Msa1461370:intron 25.0%
! CAGTTTCAAGACTTATTTAT+GGG + tig0041444:10865-10884 Msa1461370:intron 25.0%
! CTATTATAATCAAATGCAGT+CGG - tig0041444:11312-11331 None:intergenic 25.0%
!! ATGTCTGTACAATAATGTTT+TGG + tig0041444:11440-11459 Msa1461370:intron 25.0%
! TACATGATGACATTTATGTA+TGG + tig0041444:11600-11619 Msa1461370:intron 25.0%
! AAATCCAATCCAATATTGTT+TGG + tig0041444:11784-11803 Msa1461370:intron 25.0%
! ATTACCAAACAATATTGGAT+TGG - tig0041444:11791-11810 None:intergenic 25.0%
! CATCAATTACCAAACAATAT+TGG - tig0041444:11796-11815 None:intergenic 25.0%
!!! TTTTGTTGTTGTTATTTCTC+TGG + tig0041444:11950-11969 Msa1461370:intron 25.0%
! TAATATTCTTGTGTGTGTAA+AGG - tig0041444:12172-12191 None:intergenic 25.0%
! ATTTGACATATTCTGTCAAA+TGG + tig0041444:12362-12381 Msa1461370:CDS 25.0%
! TTTGACATATTCTGTCAAAT+GGG + tig0041444:12363-12382 Msa1461370:CDS 25.0%
!!! TAAAAAAAATGGATTGTACC+TGG - tig0041444:12453-12472 None:intergenic 25.0%
! ATTATTGGGATGTTGTATAT+TGG + tig0041444:12971-12990 Msa1461370:intron 25.0%
! TTATTGGGATGTTGTATATT+GGG + tig0041444:12972-12991 Msa1461370:intron 25.0%
!!! ACTGTTCTAGTTTTTTGTAA+TGG + tig0041444:13098-13117 Msa1461370:intron 25.0%
! ACAATTAAGAGAATGTTAGT+TGG - tig0041444:13160-13179 None:intergenic 25.0%
! GAATATAGCAATAGTGTTTA+AGG - tig0041444:13466-13485 None:intergenic 25.0%
! AACACTATTGCTATATTCTA+TGG + tig0041444:13468-13487 Msa1461370:CDS 25.0%
! ACACTATTGCTATATTCTAT+GGG + tig0041444:13469-13488 Msa1461370:CDS 25.0%
!! ATTTTGTATTTACTTCCTTC+TGG + tig0041444:13733-13752 Msa1461370:CDS 25.0%
!! TTGATAATTAAAACAAGTCG+TGG - tig0041444:13781-13800 None:intergenic 25.0%
! TGACAAAACCAACAAATAAA+AGG - tig0041444:13807-13826 None:intergenic 25.0%
!! CATAGAGTATTTGCTTTAAA+GGG - tig0041444:13876-13895 None:intergenic 25.0%
!! ACATAGAGTATTTGCTTTAA+AGG - tig0041444:13877-13896 None:intergenic 25.0%
! ATAGGATATCTTATCATATG+CGG + tig0041444:14278-14297 Msa1461370:intron 25.0%
!! GGTGTATTCTTTTTCTATAT+TGG + tig0041444:14568-14587 Msa1461370:three_prime_UTR 25.0%
!! GTATTCTTTTTCTATATTGG+GGG + tig0041444:14571-14590 Msa1461370:three_prime_UTR 25.0%
!!! TTTTAGAGTTAGCACAATAT+CGG + tig0041444:14638-14657 Msa1461370:three_prime_UTR 25.0%
! GTTTCATCCCTTTATAAAAT+AGG + tig0041444:14673-14692 Msa1461370:three_prime_UTR 25.0%
! TTTACATTACATTGGATAGT+TGG - tig0041444:14747-14766 None:intergenic 25.0%
! TATCCAATGTAATGTAAAGA+GGG + tig0041444:14749-14768 Msa1461370:three_prime_UTR 25.0%
TGAATTGAAATGATGAATGG+TGG - tig0041444:8334-8353 None:intergenic 30.0%
AGTAGATCAAATCATGAGAT+CGG - tig0041444:8627-8646 None:intergenic 30.0%
!!! AAAGTTGCGTTTTTTAGTGT+TGG + tig0041444:8750-8769 Msa1461370:intron 30.0%
!! TTTTTAGTGTTGGATCTTAC+TGG + tig0041444:8760-8779 Msa1461370:intron 30.0%
!! TTTTAGTGTTGGATCTTACT+GGG + tig0041444:8761-8780 Msa1461370:intron 30.0%
TAACATTATGTTGAAGTGTG+AGG + tig0041444:8996-9015 Msa1461370:intron 30.0%
TATACCAAAACCTGTTAATC+AGG - tig0041444:9035-9054 None:intergenic 30.0%
TGTGAGTCTGTGATATTTAT+CGG + tig0041444:9161-9180 Msa1461370:intron 30.0%
CTAATTAGGCCAACTTTATT+CGG + tig0041444:9583-9602 Msa1461370:intron 30.0%
! TGTCATGCTTTTCTAATCTA+TGG + tig0041444:9634-9653 Msa1461370:intron 30.0%
GGTTGTAAGCTAATAGATAT+AGG - tig0041444:9918-9937 None:intergenic 30.0%
! TTGTAGTTTCAAGAAGTGTA+TGG + tig0041444:9982-10001 Msa1461370:intron 30.0%
! GTTTCTTGTGGATTGTTATA+GGG - tig0041444:10093-10112 None:intergenic 30.0%
! TGTTTCTTGTGGATTGTTAT+AGG - tig0041444:10094-10113 None:intergenic 30.0%
TTAGGAACTTGATCTCAATT+TGG - tig0041444:10224-10243 None:intergenic 30.0%
! CAAGAGAAGTTTTCATACTT+AGG - tig0041444:10242-10261 None:intergenic 30.0%
!! ATAAGAGTATTCGTTAAAGC+TGG - tig0041444:10302-10321 None:intergenic 30.0%
! TACTCTTATTTCAGGAAATG+TGG + tig0041444:10313-10332 Msa1461370:intron 30.0%
TTCAGGAAATGTGGATAAAA+CGG + tig0041444:10322-10341 Msa1461370:intron 30.0%
TATTCTTGATGTTAGTGTAC+TGG - tig0041444:10534-10553 None:intergenic 30.0%
CAACGTAAAAATAACAGAAG+CGG + tig0041444:10561-10580 Msa1461370:intron 30.0%
!! ATGTGTGTTTCTTAGTTTGT+AGG - tig0041444:10597-10616 None:intergenic 30.0%
ACAAACTAAGAAACACACAT+CGG + tig0041444:10597-10616 Msa1461370:intron 30.0%
AGAGTATAAACCATAGAAGT+TGG + tig0041444:10641-10660 Msa1461370:intron 30.0%
!! ACTGCTTTTGACTCATAATA+GGG - tig0041444:10916-10935 None:intergenic 30.0%
!! AACTGCTTTTGACTCATAAT+AGG - tig0041444:10917-10936 None:intergenic 30.0%
TGAGTCAAAAGCAGTTAAAA+TGG + tig0041444:10921-10940 Msa1461370:intron 30.0%
CGACTGCATTTGATTATAAT+AGG + tig0041444:11310-11329 Msa1461370:intron 30.0%
TGTTATCAACAGTAAGCTAT+CGG - tig0041444:11530-11549 None:intergenic 30.0%
!! TTAACTATTCTAGAATGCCT+TGG + tig0041444:11674-11693 Msa1461370:intron 30.0%
ATTCTTGATTCCATACTTCT+CGG - tig0041444:11734-11753 None:intergenic 30.0%
TTGTCATAATGTTATGAGTG+AGG + tig0041444:11830-11849 Msa1461370:intron 30.0%
TGTCATAATGTTATGAGTGA+GGG + tig0041444:11831-11850 Msa1461370:intron 30.0%
AGTTATTCAGCAAAAATGGA+AGG - tig0041444:11918-11937 None:intergenic 30.0%
AGTGAGTTATTCAGCAAAAA+TGG - tig0041444:11922-11941 None:intergenic 30.0%
! GTTCCTACTAATATCACTTT+TGG + tig0041444:12385-12404 Msa1461370:CDS 30.0%
CATCATGAAAGAGTTGAAAA+TGG - tig0041444:12596-12615 None:intergenic 30.0%
! CATTTTCAACTCTTTCATGA+TGG + tig0041444:12594-12613 Msa1461370:intron 30.0%
ATGACTATGCAAAATATGCT+CGG + tig0041444:12668-12687 Msa1461370:intron 30.0%
GAAAGAATAACTAAATAGCG+AGG - tig0041444:12890-12909 None:intergenic 30.0%
! TCATCTTACTGGCTATTATT+GGG + tig0041444:12957-12976 Msa1461370:intron 30.0%
TTCAATTATCATGTAGCACA+TGG + tig0041444:13042-13061 Msa1461370:intron 30.0%
! TTTACACGACATGGATTATT+TGG - tig0041444:13609-13628 None:intergenic 30.0%
TCAATAAATATGCTGCCAAA+GGG - tig0041444:13708-13727 None:intergenic 30.0%
TTCAATAAATATGCTGCCAA+AGG - tig0041444:13709-13728 None:intergenic 30.0%
ATACACATAAACTGATGTTG+AGG - tig0041444:14103-14122 None:intergenic 30.0%
! TACACTTTGATGTTTTCTCT+TGG + tig0041444:14195-14214 Msa1461370:CDS 30.0%
AGAAACATCAAGTGTGATTA+AGG + tig0041444:14414-14433 Msa1461370:CDS 30.0%
TTCTACCTGTAAACATTGTT+AGG - tig0041444:14527-14546 None:intergenic 30.0%
TTAGACATAAGTCCTTCAAT+GGG - tig0041444:14702-14721 None:intergenic 30.0%
ATTAGACATAAGTCCTTCAA+TGG - tig0041444:14703-14722 None:intergenic 30.0%
CTATCCAATGTAATGTAAAG+AGG + tig0041444:14748-14767 Msa1461370:three_prime_UTR 30.0%
ATCCAATGTAATGTAAAGAG+GGG + tig0041444:14750-14769 Msa1461370:three_prime_UTR 30.0%
!!! AATGGTGGTTTTGGTCTTAT+GGG - tig0041444:8319-8338 None:intergenic 35.0%
! GAAATGATGAATGGTGGTTT+TGG - tig0041444:8328-8347 None:intergenic 35.0%
AGATTGAAGAGTGGAAAAGA+AGG - tig0041444:8369-8388 None:intergenic 35.0%
! TAACGCTTTTGTGTTGTGTT+GGG + tig0041444:8450-8469 Msa1461370:five_prime_UTR 35.0%
AAATGAAGAGAGAGAAGAAG+AGG - tig0041444:8543-8562 None:intergenic 35.0%
GAGATCGGGAAAAAAAAGAT+GGG - tig0041444:8612-8631 None:intergenic 35.0%
TGAGATCGGGAAAAAAAAGA+TGG - tig0041444:8613-8632 None:intergenic 35.0%
GTAGATCAAATCATGAGATC+GGG - tig0041444:8626-8645 None:intergenic 35.0%
!!! ACCCTTTTAGCTTTTAGCTT+CGG + tig0041444:8687-8706 Msa1461370:intron 35.0%
TCCGAAGCTAAAAGCTAAAA+GGG - tig0041444:8691-8710 None:intergenic 35.0%
ATCCGAAGCTAAAAGCTAAA+AGG - tig0041444:8692-8711 None:intergenic 35.0%
!!! TAGCTTTTAGCTTCGGATTT+TGG + tig0041444:8694-8713 Msa1461370:intron 35.0%
!!! TTAGCTTCGGATTTTGGTTT+TGG + tig0041444:8700-8719 Msa1461370:intron 35.0%
!!! TCGGATTTTGGTTTTGGAAT+TGG + tig0041444:8706-8725 Msa1461370:intron 35.0%
AATAAATCACTGTAGTGCTG+AGG + tig0041444:8949-8968 Msa1461370:intron 35.0%
GATTAATGTGCCTGATTAAC+AGG + tig0041444:9022-9041 Msa1461370:intron 35.0%
ATGCATGGATTCAATTGTCA+TGG + tig0041444:9069-9088 Msa1461370:intron 35.0%
CATAAACAACCAAACAACTG+CGG - tig0041444:9103-9122 None:intergenic 35.0%
TGTTTATGTCTTAGCGATCA+TGG + tig0041444:9115-9134 Msa1461370:intron 35.0%
AGTCTGTGATATTTATCGGT+TGG + tig0041444:9165-9184 Msa1461370:intron 35.0%
TTCATGATTCTACAACAGTG+AGG + tig0041444:9235-9254 Msa1461370:intron 35.0%
CTGAAAAGAATTGAGTGTGT+AGG + tig0041444:9322-9341 Msa1461370:intron 35.0%
AAGCTAATAGATATAGGGGT+TGG - tig0041444:9912-9931 None:intergenic 35.0%
CAAACTAAGAAACACACATC+GGG + tig0041444:10598-10617 Msa1461370:intron 35.0%
AAACTAAGAAACACACATCG+GGG + tig0041444:10599-10618 Msa1461370:intron 35.0%
GGTTTATACTCTTGCTCAAA+GGG - tig0041444:10633-10652 None:intergenic 35.0%
TGGTTTATACTCTTGCTCAA+AGG - tig0041444:10634-10653 None:intergenic 35.0%
ACAATCTTAGAATCAGCATC+AGG + tig0041444:10739-10758 Msa1461370:intron 35.0%
CAATCTTAGAATCAGCATCA+GGG + tig0041444:10740-10759 Msa1461370:intron 35.0%
CATCTTCTAATCAATCCTAG+AGG + tig0041444:10804-10823 Msa1461370:intron 35.0%
!!! TGAACTGTTTTAGCATCCAA+TGG + tig0041444:11028-11047 Msa1461370:intron 35.0%
CCTATTGATGAATCATTTGC+AGG - tig0041444:11081-11100 None:intergenic 35.0%
CCTGCAAATGATTCATCAAT+AGG + tig0041444:11078-11097 Msa1461370:intron 35.0%
TATGCCAATGATTCGTCAAT+AGG - tig0041444:11141-11160 None:intergenic 35.0%
! GGAAGTCACAGAACTATTTT+AGG - tig0041444:11210-11229 None:intergenic 35.0%
!!! TACAATAATGTTTTGGCCTC+TGG + tig0041444:11447-11466 Msa1461370:intron 35.0%
!!! ACAATAATGTTTTGGCCTCT+GGG + tig0041444:11448-11467 Msa1461370:intron 35.0%
!! GATAGCTTACTGTTGATAAC+AGG + tig0041444:11529-11548 Msa1461370:intron 35.0%
ATTCAGATGATCTTCCTTTG+TGG + tig0041444:11999-12018 Msa1461370:intron 35.0%
TTCAGATGATCTTCCTTTGT+GGG + tig0041444:12000-12019 Msa1461370:intron 35.0%
ACCAAATAAAGAGAAAGAGG+CGG - tig0041444:12038-12057 None:intergenic 35.0%
CACACCAAATAAAGAGAAAG+AGG - tig0041444:12041-12060 None:intergenic 35.0%
ATCCGTGGAGTTTCATATTT+AGG + tig0041444:12263-12282 Msa1461370:intron 35.0%
GACCTAAATATGAAACTCCA+CGG - tig0041444:12268-12287 None:intergenic 35.0%
CGTCCAAAAGTGATATTAGT+AGG - tig0041444:12391-12410 None:intergenic 35.0%
AATCTATGAGACAGAAAAGG+AGG - tig0041444:12563-12582 None:intergenic 35.0%
GTGAATCTATGAGACAGAAA+AGG - tig0041444:12566-12585 None:intergenic 35.0%
TTTCTGTCTCATAGATTCAC+TGG + tig0041444:12566-12585 Msa1461370:intron 35.0%
TCATTGATACCAATCCAGTA+AGG - tig0041444:12627-12646 None:intergenic 35.0%
TGACTATGCAAAATATGCTC+GGG + tig0041444:12669-12688 Msa1461370:intron 35.0%
! AGATGATGATTTGGAATCTC+TGG + tig0041444:12693-12712 Msa1461370:intron 35.0%
GTCATTGCTTACATGTTTAC+AGG + tig0041444:12805-12824 Msa1461370:intron 35.0%
AGAATAACTAAATAGCGAGG+AGG - tig0041444:12887-12906 None:intergenic 35.0%
GTTATTCTTTCAGCTGTAGT+TGG + tig0041444:12899-12918 Msa1461370:intron 35.0%
! GTCATCTTACTGGCTATTAT+TGG + tig0041444:12956-12975 Msa1461370:intron 35.0%
CATTCTCTTAATTGTGTCTC+AGG + tig0041444:13165-13184 Msa1461370:intron 35.0%
! GAGAGCATAACAAACAATGA+AGG - tig0041444:13210-13229 None:intergenic 35.0%
!! TTCATTTCTGGTTATGTGAG+TGG + tig0041444:13236-13255 Msa1461370:CDS 35.0%
!! TCATTTCTGGTTATGTGAGT+GGG + tig0041444:13237-13256 Msa1461370:CDS 35.0%
TTTGCATGTTAGGTAAAAGC+TGG + tig0041444:13379-13398 Msa1461370:intron 35.0%
TAAAGAAGCTGTAAGGATCA+TGG - tig0041444:13412-13431 None:intergenic 35.0%
ATGGGAATAAAGAAGCTGTA+AGG - tig0041444:13419-13438 None:intergenic 35.0%
TTATTCCCATTCATGTGCTT+TGG + tig0041444:13429-13448 Msa1461370:CDS 35.0%
CAATTCCAAAGCACATGAAT+GGG - tig0041444:13437-13456 None:intergenic 35.0%
!!! TGGTGGTTGTTTTTGTCATT+TGG + tig0041444:13520-13539 Msa1461370:CDS 35.0%
!!! GGTGGTTGTTTTTGTCATTT+GGG + tig0041444:13521-13540 Msa1461370:CDS 35.0%
! GGAATAGTTTTTACACGACA+TGG - tig0041444:13618-13637 None:intergenic 35.0%
CAATAAATATGCTGCCAAAG+GGG - tig0041444:13707-13726 None:intergenic 35.0%
!! TACTTCCTTCTGGAATTACA+AGG + tig0041444:13743-13762 Msa1461370:CDS 35.0%
AAACAGGTGTACTATGTGTA+TGG + tig0041444:13955-13974 Msa1461370:intron 35.0%
ACTGTTTGTGTGACAATTGT+CGG + tig0041444:14015-14034 Msa1461370:CDS 35.0%
! TTCCAAACCAGCTTCTATTT+TGG + tig0041444:14171-14190 Msa1461370:CDS 35.0%
ATCCAAAATAGAAGCTGGTT+TGG - tig0041444:14176-14195 None:intergenic 35.0%
AGTGTATCCAAAATAGAAGC+TGG - tig0041444:14181-14200 None:intergenic 35.0%
! TTGATGTTTTCTCTTGGACT+AGG + tig0041444:14201-14220 Msa1461370:CDS 35.0%
TTTCATCCTGCATATGTGAT+AGG + tig0041444:14260-14279 Msa1461370:intron 35.0%
AGATATCCTATCACATATGC+AGG - tig0041444:14269-14288 None:intergenic 35.0%
AAACTTTCAACCAACAGTTC+AGG - tig0041444:14331-14350 None:intergenic 35.0%
! AAGTTTTTGTTCCAATGTGC+AGG + tig0041444:14345-14364 Msa1461370:intron 35.0%
! GTTCCAATTTGTTTGTGAGA+AGG + tig0041444:14385-14404 Msa1461370:CDS 35.0%
GATCCTTCTCACAAACAAAT+TGG - tig0041444:14391-14410 None:intergenic 35.0%
! TAAGGTTTTCTGAGTCAAAC+CGG + tig0041444:14432-14451 Msa1461370:exon 35.0%
TGCTGGAGACAATAAATTCT+TGG + tig0041444:14474-14493 Msa1461370:three_prime_UTR 35.0%
TGGAGACAATAAATTCTTGG+AGG + tig0041444:14477-14496 Msa1461370:three_prime_UTR 35.0%
ATGTTTACAGGTAGAATCAC+AGG + tig0041444:14531-14550 Msa1461370:three_prime_UTR 35.0%
TGTTTACAGGTAGAATCACA+GGG + tig0041444:14532-14551 Msa1461370:three_prime_UTR 35.0%
TAAAGACAGTCAATTACAGC+CGG - tig0041444:14615-14634 None:intergenic 35.0%
! TGGGGCTCCTATTTTATAAA+GGG - tig0041444:14683-14702 None:intergenic 35.0%
! ATGGGGCTCCTATTTTATAA+AGG - tig0041444:14684-14703 None:intergenic 35.0%
TAGACATAAGTCCTTCAATG+GGG - tig0041444:14701-14720 None:intergenic 35.0%
TTATGTCTAATTCCCCAACA+TGG + tig0041444:14712-14731 Msa1461370:three_prime_UTR 35.0%
TTGGAACTTGAAACCATGTT+GGG - tig0041444:14728-14747 None:intergenic 35.0%
TTCCCCTCTTTACATTACAT+TGG - tig0041444:14755-14774 None:intergenic 35.0%
!!! GAATGGTGGTTTTGGTCTTA+TGG - tig0041444:8320-8339 None:intergenic 40.0%
GAAGAGTGGAAAAGAAGGTA+AGG - tig0041444:8364-8383 None:intergenic 40.0%
CGTTGTTGAAGATTGAAGAG+TGG - tig0041444:8378-8397 None:intergenic 40.0%
! GTAACGCTTTTGTGTTGTGT+TGG + tig0041444:8449-8468 Msa1461370:five_prime_UTR 40.0%
AGAAGAGGAAGAAGATGGAT+CGG - tig0041444:8528-8547 None:intergenic 40.0%
AGAGAAGAAGAGGAAGAAGA+TGG - tig0041444:8533-8552 None:intergenic 40.0%
TTCTCTGCTCAGTTGTGATT+TGG + tig0041444:8649-8668 Msa1461370:intron 40.0%
! GTTGGATCTTACTGGGTTTT+TGG + tig0041444:8768-8787 Msa1461370:intron 40.0%
! TGTGCCTGATTAACAGGTTT+TGG + tig0041444:9028-9047 Msa1461370:intron 40.0%
! CGGTTGGCAATCTTTTTATG+TGG + tig0041444:9181-9200 Msa1461370:intron 40.0%
ACAGTGAGGTTGACAATTGT+TGG + tig0041444:9249-9268 Msa1461370:intron 40.0%
CAATAATATTGCCAGCAGAG+AGG - tig0041444:9276-9295 None:intergenic 40.0%
TAACACATCAGATGATGTCC+TGG - tig0041444:9481-9500 None:intergenic 40.0%
TAGTTAAAGACAGAGAGCAG+AGG - tig0041444:9788-9807 None:intergenic 40.0%
CTTTACTTACTCTATAGGCG+TGG + tig0041444:9844-9863 Msa1461370:intron 40.0%
GGATGATCCTGTTAACCTTT+GGG + tig0041444:10053-10072 Msa1461370:CDS 40.0%
TTGTTCACCCAAAGGTTAAC+AGG - tig0041444:10063-10082 None:intergenic 40.0%
AACCTTTGGGTGAACAAAGT+TGG + tig0041444:10066-10085 Msa1461370:CDS 40.0%
TACTAGATGGGTGGCAAAAT+GGG - tig0041444:10134-10153 None:intergenic 40.0%
!! CAGCAGTAGAAGTACTAGAT+GGG - tig0041444:10146-10165 None:intergenic 40.0%
TTCTACTGCTGCACACAAAT+GGG + tig0041444:10155-10174 Msa1461370:CDS 40.0%
! TAAAACGGTCTTTTGCCAGA+TGG + tig0041444:10337-10356 Msa1461370:CDS 40.0%
TTGCATCATCAAGATCCATC+TGG - tig0041444:10355-10374 None:intergenic 40.0%
!! GATGGATCTTGATGATGCAA+AGG + tig0041444:10355-10374 Msa1461370:CDS 40.0%
! GCTAGCATGAAGTTTTCCTT+AGG + tig0041444:10508-10527 Msa1461370:intron 40.0%
AGACTAAACAAGCCATGAAG+TGG + tig0041444:10827-10846 Msa1461370:intron 40.0%
TGCACCTATTGACGAATCAT+TGG + tig0041444:11134-11153 Msa1461370:intron 40.0%
! TGTATGATGATGAAGCCAGA+AGG - tig0041444:11180-11199 None:intergenic 40.0%
TGGCTTCATCATCATACAGT+TGG + tig0041444:11182-11201 Msa1461370:intron 40.0%
TGGTCTTCACTTGAGAATCA+GGG + tig0041444:11369-11388 Msa1461370:intron 40.0%
ATCAGGGATATAGTTACACC+AGG + tig0041444:11385-11404 Msa1461370:intron 40.0%
AGTTAGCACATGACAACTGA+GGG - tig0041444:11419-11438 None:intergenic 40.0%
!!! CAATAATGTTTTGGCCTCTG+GGG + tig0041444:11449-11468 Msa1461370:intron 40.0%
CATACTCCTTTGACAGACAT+TGG - tig0041444:11556-11575 None:intergenic 40.0%
TCAGATGATCTTCCTTTGTG+GGG + tig0041444:12001-12020 Msa1461370:intron 40.0%
ACCGCCTCTTTCTCTTTATT+TGG + tig0041444:12034-12053 Msa1461370:intron 40.0%
CCATTATCGCTATGCTTATC+AGG - tig0041444:12140-12159 None:intergenic 40.0%
CCTGATAAGCATAGCGATAA+TGG + tig0041444:12137-12156 Msa1461370:CDS 40.0%
ACATGAATGATCTGCACAGA+AGG - tig0041444:12292-12311 None:intergenic 40.0%
AATTCTCAGTCACAGAGCTA+AGG - tig0041444:12535-12554 None:intergenic 40.0%
ATGATGGTCATCTTCCTTAC+TGG + tig0041444:12610-12629 Msa1461370:intron 40.0%
! TGATTTGGAATCTCTGGTGA+TGG + tig0041444:12699-12718 Msa1461370:intron 40.0%
AGAGACGTTAGTGAAGAATC+TGG + tig0041444:12830-12849 Msa1461370:intron 40.0%
! TTGTGCACGGTGATGTTTTT+CGG + tig0041444:12861-12880 Msa1461370:intron 40.0%
GGTTCTTCTTGTCATCTTAC+TGG + tig0041444:12946-12965 Msa1461370:intron 40.0%
TGGCAGAGAATGAAAAGCAA+TGG - tig0041444:13140-13159 None:intergenic 40.0%
!! CATTTCTGGTTATGTGAGTG+GGG + tig0041444:13238-13257 Msa1461370:CDS 40.0%
!! ATTTCTGGTTATGTGAGTGG+GGG + tig0041444:13239-13258 Msa1461370:CDS 40.0%
CCAATTCCAAAGCACATGAA+TGG - tig0041444:13438-13457 None:intergenic 40.0%
!! CCATTCATGTGCTTTGGAAT+TGG + tig0041444:13435-13454 Msa1461370:CDS 40.0%
GTACAGTTGTTGGAAGAAAC+TGG + tig0041444:13574-13593 Msa1461370:CDS 40.0%
TACCACTTCTTCTCAGGAAT+GGG - tig0041444:13645-13664 None:intergenic 40.0%
GTTCACCTTGTAATTCCAGA+AGG - tig0041444:13751-13770 None:intergenic 40.0%
TTTCCTCCTTTGTGACAAAC+AGG + tig0041444:13939-13958 Msa1461370:intron 40.0%
AGTACACCTGTTTGTCACAA+AGG - tig0041444:13948-13967 None:intergenic 40.0%
!! TGTGTATGGCTTTATGCTAC+TGG + tig0041444:13969-13988 Msa1461370:CDS 40.0%
TGTCACACAAACAGTAACGA+TGG - tig0041444:14010-14029 None:intergenic 40.0%
CTGTTTGTGTGACAATTGTC+GGG + tig0041444:14016-14035 Msa1461370:CDS 40.0%
TAAATGCTGAGAACTACCAC+TGG + tig0041444:14052-14071 Msa1461370:CDS 40.0%
TACGTGAAGACAAAGATGTC+AGG + tig0041444:14144-14163 Msa1461370:CDS 40.0%
ACGTGAAGACAAAGATGTCA+GGG + tig0041444:14145-14164 Msa1461370:CDS 40.0%
! CTTGGACTAGGAATTCTTTG+CGG + tig0041444:14213-14232 Msa1461370:CDS 40.0%
! GCTTTTATCACCTGAACTGT+TGG + tig0041444:14318-14337 Msa1461370:intron 40.0%
GGGAACCTAACAATGTTTAC+AGG + tig0041444:14519-14538 Msa1461370:three_prime_UTR 40.0%
!!! ATCACAGGGTTTTGGTAATG+AGG + tig0041444:14546-14565 Msa1461370:three_prime_UTR 40.0%
!!! TCACAGGGTTTTGGTAATGA+GGG + tig0041444:14547-14566 Msa1461370:three_prime_UTR 40.0%
AAAGACAGTCAATTACAGCC+GGG - tig0041444:14614-14633 None:intergenic 40.0%
TAAAATAGGAGCCCCATTGA+AGG + tig0041444:14687-14706 Msa1461370:three_prime_UTR 40.0%
TGGAACTTGAAACCATGTTG+GGG - tig0041444:14727-14746 None:intergenic 40.0%
GTTGGAACTTGAAACCATGT+TGG - tig0041444:14729-14748 None:intergenic 40.0%
!! TGGTGATGGATGGGTTGAAT+TGG - tig0041444:8489-8508 None:intergenic 45.0%
GAAGAGGAAGAAGATGGATC+GGG - tig0041444:8527-8546 None:intergenic 45.0%
!! GTGATCTGATTCTGAAGCGA+AGG - tig0041444:8572-8591 None:intergenic 45.0%
CGCTTCAGAATCAGATCACA+AGG + tig0041444:8573-8592 Msa1461370:CDS 45.0%
! AAATCACTGTAGTGCTGAGG+TGG + tig0041444:8952-8971 Msa1461370:intron 45.0%
!! ATAGCTTGCTGTTGCATGCA+TGG + tig0041444:9054-9073 Msa1461370:intron 45.0%
GAATCGAATCCGCAGTTGTT+TGG + tig0041444:9091-9110 Msa1461370:intron 45.0%
! TGGTCTTAACGTGCACTTAG+GGG - tig0041444:9461-9480 None:intergenic 45.0%
!! CTGGTCTTAACGTGCACTTA+GGG - tig0041444:9462-9481 None:intergenic 45.0%
CATGGCTGTCCGAATAAAGT+TGG - tig0041444:9595-9614 None:intergenic 45.0%
CAACTTTATTCGGACAGCCA+TGG + tig0041444:9593-9612 Msa1461370:intron 45.0%
GATGCATCAATCTGCTTCAC+TGG - tig0041444:9956-9975 None:intergenic 45.0%
GGGATGATCCTGTTAACCTT+TGG + tig0041444:10052-10071 Msa1461370:CDS 45.0%
GTCCAACTTTGTTCACCCAA+AGG - tig0041444:10071-10090 None:intergenic 45.0%
GTACTAGATGGGTGGCAAAA+TGG - tig0041444:10135-10154 None:intergenic 45.0%
!! CAGTAGAAGTACTAGATGGG+TGG - tig0041444:10143-10162 None:intergenic 45.0%
!! GCAGCAGTAGAAGTACTAGA+TGG - tig0041444:10147-10166 None:intergenic 45.0%
CTTCTACTGCTGCACACAAA+TGG + tig0041444:10154-10173 Msa1461370:CDS 45.0%
TCTACTGCTGCACACAAATG+GGG + tig0041444:10156-10175 Msa1461370:CDS 45.0%
! GATGTTAGTGTACTGGCCTA+AGG - tig0041444:10527-10546 None:intergenic 45.0%
AATTGGATAGCGAAGACAGC+AGG - tig0041444:10705-10724 None:intergenic 45.0%
!! TGGCTTGTTTAGTCTCCTCT+AGG - tig0041444:10822-10841 None:intergenic 45.0%
CTCAAGTCAAGACCACTTCA+TGG - tig0041444:10842-10861 None:intergenic 45.0%
TAGCATCCAATGGTACGATG+AGG + tig0041444:11038-11057 Msa1461370:intron 45.0%
AGACTTCCTCATCGTACCAT+TGG - tig0041444:11047-11066 None:intergenic 45.0%
TGATTCTCGTAGCCATGAAG+TGG + tig0041444:11349-11368 Msa1461370:intron 45.0%
CTCAAGTGAAGACCACTTCA+TGG - tig0041444:11364-11383 None:intergenic 45.0%
GTGGTCTTCACTTGAGAATC+AGG + tig0041444:11368-11387 Msa1461370:intron 45.0%
GTTAGCACATGACAACTGAG+GGG - tig0041444:11418-11437 None:intergenic 45.0%
CAGTTAGCACATGACAACTG+AGG - tig0041444:11420-11439 None:intergenic 45.0%
TCAACAGTAAGCTATCGGTG+TGG - tig0041444:11525-11544 None:intergenic 45.0%
ACAGGACCAATGTCTGTCAA+AGG + tig0041444:11547-11566 Msa1461370:intron 45.0%
TAGAATGCCTTGGTCAGTGT+TGG + tig0041444:11684-11703 Msa1461370:intron 45.0%
CTGAAAACCAACACTGACCA+AGG - tig0041444:11694-11713 None:intergenic 45.0%
!! ACCTCTAGAACCGAGAAGTA+TGG + tig0041444:11721-11740 Msa1461370:intron 45.0%
! TCCATACTTCTCGGTTCTAG+AGG - tig0041444:11725-11744 None:intergenic 45.0%
! TGAGTGAGGGTTTGTTCTGA+TGG + tig0041444:11844-11863 Msa1461370:intron 45.0%
!! GTTATTTCTCTGGTCTGCTC+TGG + tig0041444:11960-11979 Msa1461370:intron 45.0%
AAAGAGAAAGAGGCGGTTCT+AGG - tig0041444:12031-12050 None:intergenic 45.0%
! AAATGTTTTCCTGCCTCCAC+AGG - tig0041444:12340-12359 None:intergenic 45.0%
TGTGGAGGCAGGAAAACATT+TGG + tig0041444:12339-12358 Msa1461370:CDS 45.0%
AGTCCAGGTAGACATCAAAG+CGG - tig0041444:12414-12433 None:intergenic 45.0%
GCTCAAAGAAAGGATAGTCC+AGG - tig0041444:12429-12448 None:intergenic 45.0%
CTATCCTTTCTTTGAGCACC+AGG + tig0041444:12432-12451 Msa1461370:CDS 45.0%
TGTACCTGGTGCTCAAAGAA+AGG - tig0041444:12439-12458 None:intergenic 45.0%
GGTCATCTTCCTTACTGGAT+TGG + tig0041444:12615-12634 Msa1461370:intron 45.0%
TGCTCGGGAAGATGATGATT+TGG + tig0041444:12684-12703 Msa1461370:intron 45.0%
ACGTTAGTGAAGAATCTGGC+TGG + tig0041444:12834-12853 Msa1461370:intron 45.0%
CATAGCTGAGATATGCATGC+AGG - tig0041444:13073-13092 None:intergenic 45.0%
TCTTAATTGTGTCTCAGGCG+AGG + tig0041444:13170-13189 Msa1461370:intron 45.0%
GCTCTCACATCGTTCATTTC+TGG + tig0041444:13224-13243 Msa1461370:CDS 45.0%
!! TTTCTGGTTATGTGAGTGGG+GGG + tig0041444:13240-13259 Msa1461370:CDS 45.0%
TCTCTAGCTGCTATCCCATT+TGG + tig0041444:13492-13511 Msa1461370:CDS 45.0%
TGCTATCCCATTTGGCACAA+TGG + tig0041444:13500-13519 Msa1461370:CDS 45.0%
TATCCCATTTGGCACAATGG+TGG + tig0041444:13503-13522 Msa1461370:CDS 45.0%
CAACCACCATTGTGCCAAAT+GGG - tig0041444:13509-13528 None:intergenic 45.0%
ACAACCACCATTGTGCCAAA+TGG - tig0041444:13510-13529 None:intergenic 45.0%
TCTTTCCCTCTTGCACTTCT+TGG + tig0041444:13552-13571 Msa1461370:CDS 45.0%
! CTGTACCAAGAAGTGCAAGA+GGG - tig0041444:13560-13579 None:intergenic 45.0%
! ACTGTACCAAGAAGTGCAAG+AGG - tig0041444:13561-13580 None:intergenic 45.0%
GCACTTCTTGGTACAGTTGT+TGG + tig0041444:13564-13583 Msa1461370:CDS 45.0%
GTTGTTGGAAGAAACTGGAG+TGG + tig0041444:13579-13598 Msa1461370:CDS 45.0%
GTACCACTTCTTCTCAGGAA+TGG - tig0041444:13646-13665 None:intergenic 45.0%
ACCTTCAGTGGTTTCTCTGA+TGG + tig0041444:13671-13690 Msa1461370:CDS 45.0%
CCTTCAGTGGTTTCTCTGAT+GGG + tig0041444:13672-13691 Msa1461370:CDS 45.0%
TTAGCGAACACACACACTGT+TGG + tig0041444:13903-13922 Msa1461370:intron 45.0%
ACACCTGTTTGTCACAAAGG+AGG - tig0041444:13945-13964 None:intergenic 45.0%
AAATTCTTGGAGGAAGCCTC+TGG + tig0041444:14487-14506 Msa1461370:three_prime_UTR 45.0%
! CAGGTAGAATCACAGGGTTT+TGG + tig0041444:14538-14557 Msa1461370:three_prime_UTR 45.0%
!!! GAAGCCTGAGATTTTTTCCC+CGG + tig0041444:14593-14612 Msa1461370:three_prime_UTR 45.0%
AAGACAGTCAATTACAGCCG+GGG - tig0041444:14613-14632 None:intergenic 45.0%
!!! AAATTATTAAATTTAAAACA+AGG - tig0041444:11882-11901 None:intergenic 5.0%
!!! TATATTTTTTTTAATGTTTA+AGG + tig0041444:12095-12114 Msa1461370:intron 5.0%
!!! AATATTGAAATATTTATTTT+TGG + tig0041444:12478-12497 Msa1461370:intron 5.0%
!! AGGACATGGTGGTGATGGAT+GGG - tig0041444:8498-8517 None:intergenic 50.0%
!! AAGGACATGGTGGTGATGGA+TGG - tig0041444:8499-8518 None:intergenic 50.0%
! TTGGAAGGACATGGTGGTGA+TGG - tig0041444:8503-8522 None:intergenic 50.0%
GAAGATGGATCGGGATTGGA+AGG - tig0041444:8518-8537 None:intergenic 50.0%
GGAAGAAGATGGATCGGGAT+TGG - tig0041444:8522-8541 None:intergenic 50.0%
CAATTGTTGGTCCTCTCTGC+TGG + tig0041444:9262-9281 Msa1461370:intron 50.0%
!! CCTGGTCTTAACGTGCACTT+AGG - tig0041444:9463-9482 None:intergenic 50.0%
CCTAAGTGCACGTTAAGACC+AGG + tig0041444:9460-9479 Msa1461370:intron 50.0%
!! CACTGGCTCATCAGGGAAAA+AGG - tig0041444:9939-9958 None:intergenic 50.0%
!! TCTGCTTCACTGGCTCATCA+GGG - tig0041444:9946-9965 None:intergenic 50.0%
!! ATCTGCTTCACTGGCTCATC+AGG - tig0041444:9947-9966 None:intergenic 50.0%
ATAGCGAAGACAGCAGGCAT+GGG - tig0041444:10699-10718 None:intergenic 50.0%
CAGGGAGATCTCACTAGAAG+AGG + tig0041444:10758-10777 Msa1461370:intron 50.0%
GAGATCTCACTAGAAGAGGC+TGG + tig0041444:10762-10781 Msa1461370:intron 50.0%
AAGAGGCTGGCAGTAGTTAC+AGG + tig0041444:10775-10794 Msa1461370:intron 50.0%
GGTACGATGAGGAAGTCTGA+AGG + tig0041444:11049-11068 Msa1461370:intron 50.0%
GATGCTCTCTTGCTACCTTC+TGG + tig0041444:11162-11181 Msa1461370:intron 50.0%
ACATGACAACTGAGGGGATC+TGG - tig0041444:11412-11431 None:intergenic 50.0%
TAGTGTCTATCTCACCCCAG+AGG - tig0041444:11466-11485 None:intergenic 50.0%
ACACTACCTGGATCTGAGCT+TGG + tig0041444:11480-11499 Msa1461370:intron 50.0%
CACTACCTGGATCTGAGCTT+GGG + tig0041444:11481-11500 Msa1461370:intron 50.0%
! GTTCTAGGCATACCCCACAA+AGG - tig0041444:12016-12035 None:intergenic 50.0%
!!! ATAAGGGGTTTTGGGATCCG+TGG + tig0041444:12248-12267 Msa1461370:intron 50.0%
TCAAGATGTCCCAAAGCCTG+TGG + tig0041444:12321-12340 Msa1461370:CDS 50.0%
GAGCTAAGGCAGGATCAACA+TGG - tig0041444:12521-12540 None:intergenic 50.0%
TCTGGCTGGAAACTTGTGCA+CGG + tig0041444:12848-12867 Msa1461370:intron 50.0%
CTTTCAGCTGTAGTTGGCAC+AGG + tig0041444:12905-12924 Msa1461370:intron 50.0%
GGGGGATGTACTCACGAAAT+GGG + tig0041444:13258-13277 Msa1461370:CDS 50.0%
GGGGATGTACTCACGAAATG+GGG + tig0041444:13259-13278 Msa1461370:CDS 50.0%
GGGATGTACTCACGAAATGG+GGG + tig0041444:13260-13279 Msa1461370:CDS 50.0%
TGTACTCACGAAATGGGGGT+AGG + tig0041444:13264-13283 Msa1461370:intron 50.0%
CAGTTCTCTCTCTCTCTCTC+TGG + tig0041444:13329-13348 Msa1461370:intron 50.0%
TTCTTCTCAGGAATGGGACG+AGG - tig0041444:13639-13658 None:intergenic 50.0%
GTCCCATTCCTGAGAAGAAG+TGG + tig0041444:13640-13659 Msa1461370:CDS 50.0%
! GTGAGGTACCACTTCTTCTC+AGG - tig0041444:13651-13670 None:intergenic 50.0%
! GAGAAACCACTGAAGGTGTG+AGG - tig0041444:13668-13687 None:intergenic 50.0%
CCCATCAGAGAAACCACTGA+AGG - tig0041444:13675-13694 None:intergenic 50.0%
TCAGTGGTTTCTCTGATGGG+AGG + tig0041444:13675-13694 Msa1461370:CDS 50.0%
CTGAGAACTACCACTGGCAA+TGG + tig0041444:14058-14077 Msa1461370:CDS 50.0%
AGAAAGACGTCCATTGCCAG+TGG - tig0041444:14071-14090 None:intergenic 50.0%
TTCCAATGTGCAGGAGCTGT+AGG + tig0041444:14354-14373 Msa1461370:intron 50.0%
AACCTACAGCTCCTGCACAT+TGG - tig0041444:14359-14378 None:intergenic 50.0%
! GCAGGAGCTGTAGGTTTTCT+TGG + tig0041444:14363-14382 Msa1461370:intron 50.0%
! TCAAACCGGAGCACTTCCAT+AGG + tig0041444:14446-14465 Msa1461370:three_prime_UTR 50.0%
!! ACAAGCCTATGGAAGTGCTC+CGG - tig0041444:14454-14473 None:intergenic 50.0%
!! CACTTCCATAGGCTTGTTGC+TGG + tig0041444:14457-14476 Msa1461370:three_prime_UTR 50.0%
TGTCTCCAGCAACAAGCCTA+TGG - tig0041444:14465-14484 None:intergenic 50.0%
ACAGCCGGGGAAAAAATCTC+AGG - tig0041444:14600-14619 None:intergenic 50.0%
TCGGGATTGGAAGGACATGG+TGG - tig0041444:8509-8528 None:intergenic 55.0%
GGATCGGGATTGGAAGGACA+TGG - tig0041444:8512-8531 None:intergenic 55.0%
ACTGCTGCACACAAATGGGG+TGG + tig0041444:10159-10178 Msa1461370:CDS 55.0%
GCACACAAATGGGGTGGTCT+TGG + tig0041444:10165-10184 Msa1461370:CDS 55.0%
! CAAATGGGGTGGTCTTGGTG+AGG + tig0041444:10170-10189 Msa1461370:CDS 55.0%
! GGTGGTCTTGGTGAGGTTCT+GGG + tig0041444:10177-10196 Msa1461370:CDS 55.0%
ATGGGGCTGTGTCCTCTGAA+AGG - tig0041444:10681-10700 None:intergenic 55.0%
TAGCGAAGACAGCAGGCATG+GGG - tig0041444:10698-10717 None:intergenic 55.0%
GATAGCGAAGACAGCAGGCA+TGG - tig0041444:10700-10719 None:intergenic 55.0%
GGGGTGAGATAGACACTACC+TGG + tig0041444:11468-11487 Msa1461370:intron 55.0%
TGACACCCAAGCTCAGATCC+AGG - tig0041444:11489-11508 None:intergenic 55.0%
AGATGTCCCAAAGCCTGTGG+AGG + tig0041444:12324-12343 Msa1461370:CDS 55.0%
TTCCTGCCTCCACAGGCTTT+GGG - tig0041444:12333-12352 None:intergenic 55.0%
TTTCCTGCCTCCACAGGCTT+TGG - tig0041444:12334-12353 None:intergenic 55.0%
! ACGCCGCTTTGATGTCTACC+TGG + tig0041444:12408-12427 Msa1461370:CDS 55.0%
CTCAGTCACAGAGCTAAGGC+AGG - tig0041444:12531-12550 None:intergenic 55.0%
GGGGGGATGTACTCACGAAA+TGG + tig0041444:13257-13276 Msa1461370:CDS 55.0%
GTGGTACCTCACACCTTCAG+TGG + tig0041444:13659-13678 Msa1461370:CDS 55.0%
AGGAAGCCTCTGGTCATGTG+TGG + tig0041444:14497-14516 Msa1461370:three_prime_UTR 55.0%
GGAAGCCTCTGGTCATGTGT+GGG + tig0041444:14498-14517 Msa1461370:three_prime_UTR 55.0%
GAAGCCTCTGGTCATGTGTG+GGG + tig0041444:14499-14518 Msa1461370:three_prime_UTR 55.0%
! GGGTGGTCTTGGTGAGGTTC+TGG + tig0041444:10176-10195 Msa1461370:CDS 60.0%
!! GGTCTTGGTGAGGTTCTGGG+TGG + tig0041444:10180-10199 Msa1461370:CDS 60.0%
CAACTGAGGGGATCTGGACC+TGG - tig0041444:11406-11425 None:intergenic 60.0%
AGGTGCTCAGCTAGCACTGC+TGG + tig0041444:12925-12944 Msa1461370:intron 60.0%
ATGGGAGGACTGCTCCCCTT+TGG + tig0041444:13690-13709 Msa1461370:CDS 60.0%
GGTTCCCCACACATGACCAG+AGG - tig0041444:14506-14525 None:intergenic 60.0%
GTCCCAAAGCCTGTGGAGGC+AGG + tig0041444:12328-12347 Msa1461370:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0041444 gene 8245 14864 8245 ID=Msa1461370;Name=Msa1461370
tig0041444 mRNA 8245 14864 8245 ID=Msa1461370-mRNA-1;Parent=Msa1461370;Name=Msa1461370-mRNA-1;_AED=0.13;_eAED=0.13;_QI=266|0.8|0.90|0.90|0.8|0.90|11|430|507
tig0041444 exon 8245 8594 8245 ID=Msa1461370-mRNA-1:exon:23149;Parent=Msa1461370-mRNA-1
tig0041444 exon 10045 10243 10045 ID=Msa1461370-mRNA-1:exon:23150;Parent=Msa1461370-mRNA-1
tig0041444 exon 10327 10431 10327 ID=Msa1461370-mRNA-1:exon:23151;Parent=Msa1461370-mRNA-1
tig0041444 exon 12005 12022 12005 ID=Msa1461370-mRNA-1:exon:23152;Parent=Msa1461370-mRNA-1
tig0041444 exon 12117 12214 12117 ID=Msa1461370-mRNA-1:exon:23153;Parent=Msa1461370-mRNA-1
tig0041444 exon 12301 12453 12301 ID=Msa1461370-mRNA-1:exon:23154;Parent=Msa1461370-mRNA-1
tig0041444 exon 13058 13113 13058 ID=Msa1461370-mRNA-1:exon:23155;Parent=Msa1461370-mRNA-1
tig0041444 exon 13187 13281 13187 ID=Msa1461370-mRNA-1:exon:23156;Parent=Msa1461370-mRNA-1
tig0041444 exon 13391 13764 13391 ID=Msa1461370-mRNA-1:exon:23157;Parent=Msa1461370-mRNA-1
tig0041444 exon 13961 14234 13961 ID=Msa1461370-mRNA-1:exon:23158;Parent=Msa1461370-mRNA-1
tig0041444 exon 14367 14864 14367 ID=Msa1461370-mRNA-1:exon:23159;Parent=Msa1461370-mRNA-1
tig0041444 five_prime_UTR 8245 8510 8245 ID=Msa1461370-mRNA-1:five_prime_utr;Parent=Msa1461370-mRNA-1
tig0041444 CDS 8511 8594 8511 ID=Msa1461370-mRNA-1:cds;Parent=Msa1461370-mRNA-1
tig0041444 CDS 10045 10243 10045 ID=Msa1461370-mRNA-1:cds;Parent=Msa1461370-mRNA-1
tig0041444 CDS 10327 10431 10327 ID=Msa1461370-mRNA-1:cds;Parent=Msa1461370-mRNA-1
tig0041444 CDS 12005 12022 12005 ID=Msa1461370-mRNA-1:cds;Parent=Msa1461370-mRNA-1
tig0041444 CDS 12117 12214 12117 ID=Msa1461370-mRNA-1:cds;Parent=Msa1461370-mRNA-1
tig0041444 CDS 12301 12453 12301 ID=Msa1461370-mRNA-1:cds;Parent=Msa1461370-mRNA-1
tig0041444 CDS 13058 13113 13058 ID=Msa1461370-mRNA-1:cds;Parent=Msa1461370-mRNA-1
tig0041444 CDS 13187 13281 13187 ID=Msa1461370-mRNA-1:cds;Parent=Msa1461370-mRNA-1
tig0041444 CDS 13391 13764 13391 ID=Msa1461370-mRNA-1:cds;Parent=Msa1461370-mRNA-1
tig0041444 CDS 13961 14234 13961 ID=Msa1461370-mRNA-1:cds;Parent=Msa1461370-mRNA-1
tig0041444 CDS 14367 14434 14367 ID=Msa1461370-mRNA-1:cds;Parent=Msa1461370-mRNA-1
tig0041444 three_prime_UTR 14435 14864 14435 ID=Msa1461370-mRNA-1:three_prime_utr;Parent=Msa1461370-mRNA-1
Gene Sequence

>Msa1461370

ATGTCCTTCCAATCCCGATCCATCTTCTTCCTCTTCTTCTCTCTCTTCATTTCTTCAACCTTCGCTTCAGAATCAGATCACAAGTATCAACGGGATGATCCTGTTAACCTTTGGGTGAACAAAGTTGGACCCTATAACAATCCACAAGAAACATACAATTATTACAGTCTCCCATTTTGCCACCCATCTAGTACTTCTACTGCTGCACACAAATGGGGTGGTCTTGGTGAGGTTCTGGGTGGCAATGAACTCATCGACAGCCAAATTGAGATCAAGTTCCTAAGAAATGTGGATAAAACGGTCTTTTGCCAGATGGATCTTGATGATGCAAAGGTTAAACAGTTCAAGCATGCAATAGAGAATAATTACTGGTTTGAATTTTTCATGGATGATCTTCCTTTGTGGGGATATGTTGGTGAGCTACATCCTGATAAGCATAGCGATAATGGCAAGCACGTCCTTTACACACACAAGAATATTATTGTTAAATACAATAATGATCAGATCATTCATGTTAATCTCACTCAAGATGTCCCAAAGCCTGTGGAGGCAGGAAAACATTTGGATTTGACATATTCTGTCAAATGGGTTCCTACTAATATCACTTTTGGACGCCGCTTTGATGTCTACCTGGACTATCCTTTCTTTGAGCACCAGCACATGGAAATTCCTGCATGCATATCTCAGCTATGTATGCACTGTTCTAGTTTTTTGCGAGGAGCAATTGTCACAACCTTCATTGTTTGTTATGCTCTCACATCGTTCATTTCTGGTTATGTGAGTGGGGGGATGTACTCACGAAATGGGGGTAAAAGCTGGATTAAATCCATGATCCTTACAGCTTCTTTATTCCCATTCATGTGCTTTGGAATTGGATTTGCCTTAAACACTATTGCTATATTCTATGGGTCTCTAGCTGCTATCCCATTTGGCACAATGGTGGTTGTTTTTGTCATTTGGGCTTTCATCTCTTTCCCTCTTGCACTTCTTGGTACAGTTGTTGGAAGAAACTGGAGTGGTGCTCCAAATAATCCATGTCGTGTAAAAACTATTCCTCGTCCCATTCCTGAGAAGAAGTGGTACCTCACACCTTCAGTGGTTTCTCTGATGGGAGGACTGCTCCCCTTTGGCAGCATATTTATTGAAATGTATTTTGTATTTACTTCCTTCTGGAATTACAAGGTGTACTATGTGTATGGCTTTATGCTACTGGTTTTTCTGATTCTCACCATCGTTACTGTTTGTGTGACAATTGTCGGGACATACTTTTTGTTAAATGCTGAGAACTACCACTGGCAATGGACGTCTTTCTTTTCAGCTGCCTCAACATCAGTTTATGTGTATTTATACTCAATATATTATTACTACGTGAAGACAAAGATGTCAGGGTTCTTCCAAACCAGCTTCTATTTTGGATACACTTTGATGTTTTCTCTTGGACTAGGAATTCTTTGCGGAGCTGTAGGTTTTCTTGGTTCCAATTTGTTTGTGAGAAGGATCTACAGAAACATCAAGTGTGATTAA

Protein sequence

>Msa1461370

MSFQSRSIFFLFFSLFISSTFASESDHKYQRDDPVNLWVNKVGPYNNPQETYNYYSLPFCHPSSTSTAAHKWGGLGEVLGGNELIDSQIEIKFLRNVDKTVFCQMDLDDAKVKQFKHAIENNYWFEFFMDDLPLWGYVGELHPDKHSDNGKHVLYTHKNIIVKYNNDQIIHVNLTQDVPKPVEAGKHLDLTYSVKWVPTNITFGRRFDVYLDYPFFEHQHMEIPACISQLCMHCSSFLRGAIVTTFIVCYALTSFISGYVSGGMYSRNGGKSWIKSMILTASLFPFMCFGIGFALNTIAIFYGSLAAIPFGTMVVVFVIWAFISFPLALLGTVVGRNWSGAPNNPCRVKTIPRPIPEKKWYLTPSVVSLMGGLLPFGSIFIEMYFVFTSFWNYKVYYVYGFMLLVFLILTIVTVCVTIVGTYFLLNAENYHWQWTSFFSAASTSVYVYLYSIYYYYVKTKMSGFFQTSFYFGYTLMFSLGLGILCGAVGFLGSNLFVRRIYRNIKCD*