Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0531210 | Msa0802810 | 0.943712 | 7.337035e-103 | -8.615850e-47 |
| Msa0531210 | Msa1315530 | 0.927804 | 7.044469e-92 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 35 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGTAATATACAAATTTC+AGG | 0.187791 | 4_1:+5422602 | Msa0531210:exon |
| TATTTCCTTTCTTACTTTGT+CGG | 0.303938 | 4_1:+5424898 | Msa0531210:three_prime_UTR |
| TTTATATATAGATGTTGATA+TGG | 0.339606 | 4_1:-5424738 | None:intergenic |
| TTATAGACCATCCATTCATT+TGG | 0.360233 | 4_1:-5420957 | None:intergenic |
| TTAAATTTGATAGCTATATC+AGG | 0.360340 | 4_1:-5424664 | None:intergenic |
| CAGAAATTCAAAAGGGATGA+AGG | 0.374176 | 4_1:+5421483 | Msa0531210:CDS |
| TGCAAGTGACATTTGATTTG+AGG | 0.391666 | 4_1:-5424594 | None:intergenic |
| CTATTCTCTTACAATCTCTC+TGG | 0.420293 | 4_1:+5420890 | Msa0531210:CDS |
| TCCGCGATTTATACTGGTAA+AGG | 0.425844 | 4_1:+5424547 | Msa0531210:three_prime_UTR |
| GGCTTTAGGATTGGAGACTC+TGG | 0.432889 | 4_1:+5424421 | Msa0531210:intron |
| GTTCATGAGAAACGAACATT+TGG | 0.433246 | 4_1:-5424763 | None:intergenic |
| TATTCAATATATAGACCATA+AGG | 0.439287 | 4_1:+5424245 | Msa0531210:three_prime_UTR |
| CCGCGATTTATACTGGTAAA+GGG | 0.439289 | 4_1:+5424548 | Msa0531210:three_prime_UTR |
| TTTAACTAGAGCCTTTCCTT+TGG | 0.464265 | 4_1:+5424798 | Msa0531210:three_prime_UTR |
| GAATGGATGGTCTATAACTC+AGG | 0.479748 | 4_1:+5420963 | Msa0531210:CDS |
| ATGAGGCAACTCCAAATGAA+TGG | 0.480703 | 4_1:+5420946 | Msa0531210:CDS |
| GGAGGCTCCGCGATTTATAC+TGG | 0.485199 | 4_1:+5424541 | Msa0531210:three_prime_UTR |
| GCCTTTCTTCTCAAGTCATA+CGG | 0.508836 | 4_1:+5424493 | Msa0531210:three_prime_UTR |
| ATAAACCGACAAAGTAAGAA+AGG | 0.510637 | 4_1:-5424903 | None:intergenic |
| CATTTGATTTGAGGATAAAG+AGG | 0.510651 | 4_1:-5424585 | None:intergenic |
| AAATTCAGGGTATCTATAAG+AGG | 0.523952 | 4_1:+5421537 | Msa0531210:CDS |
| GTCATACGGTGCATACATGT+GGG | 0.540509 | 4_1:+5424507 | Msa0531210:three_prime_UTR |
| AGTCATACGGTGCATACATG+TGG | 0.552933 | 4_1:+5424506 | Msa0531210:three_prime_UTR |
| TACATGTGGGGTTATTTGTG+TGG | 0.573851 | 4_1:+5424520 | Msa0531210:three_prime_UTR |
| GGCAACTCCAAATGAATGGA+TGG | 0.584406 | 4_1:+5420950 | Msa0531210:CDS |
| ACTATTAATATCCAAAGGAA+AGG | 0.589242 | 4_1:-5424809 | None:intergenic |
| TCTAGTTAAAGCGTATACAT+AGG | 0.590929 | 4_1:-5424785 | None:intergenic |
| TGTGTATCTAGTAGTTGCAA+TGG | 0.592378 | 4_1:-5424456 | None:intergenic |
| GAAGCTAAAACGATATTCAG+AGG | 0.595773 | 4_1:-5424716 | None:intergenic |
| ATGTGGGGTTATTTGTGTGG+AGG | 0.607763 | 4_1:+5424523 | Msa0531210:three_prime_UTR |
| ACCGTATGACTTGAGAAGAA+AGG | 0.608857 | 4_1:-5424494 | None:intergenic |
| TATGAACTATTAATATCCAA+AGG | 0.612972 | 4_1:-5424814 | None:intergenic |
| ACTACTAGCTTATGCATGTG+AGG | 0.626348 | 4_1:+5422579 | Msa0531210:CDS |
| CCCTTTACCAGTATAAATCG+CGG | 0.661490 | 4_1:-5424548 | None:intergenic |
| TCATACGGTGCATACATGTG+GGG | 0.706711 | 4_1:+5424508 | Msa0531210:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTGATACAAAATATAA+TGG | - | chr4_1:5422268-5422287 | None:intergenic | 10.0% |
| !!! | TTTATATATATTTTTGTTAC+AGG | + | chr4_1:5422400-5422419 | Msa0531210:intron | 10.0% |
| !!! | TTATTTGAAGTTTAATTAAA+TGG | + | chr4_1:5422488-5422507 | Msa0531210:intron | 10.0% |
| !! | CAATTTATCAATAAAATTTA+AGG | + | chr4_1:5422939-5422958 | Msa0531210:intron | 10.0% |
| !!! | TTTTTTTTTTTACTTTTGAT+TGG | + | chr4_1:5423704-5423723 | Msa0531210:intron | 10.0% |
| !! | TTTCAAATTTATAGTGATTA+AGG | - | chr4_1:5421083-5421102 | None:intergenic | 15.0% |
| !!! | AAATACAAATTTTGTTGTTT+TGG | + | chr4_1:5421194-5421213 | Msa0531210:intron | 15.0% |
| !!! | TTTAAAAGTTACAATTTTGT+TGG | + | chr4_1:5421346-5421365 | Msa0531210:intron | 15.0% |
| !!! | AAACATTGATTGATTTTAAT+GGG | + | chr4_1:5421567-5421586 | Msa0531210:intron | 15.0% |
| !! | TGAAAGTTAAATTCAAAAAT+TGG | + | chr4_1:5421668-5421687 | Msa0531210:intron | 15.0% |
| !! | AGTAAAAAAAATAGACAAAA+AGG | - | chr4_1:5422809-5422828 | None:intergenic | 15.0% |
| !!! | ATAAAATTTAAGGTTGTTTA+AGG | + | chr4_1:5422949-5422968 | Msa0531210:intron | 15.0% |
| !!! | TTCTTTTCATTTCTAATTTA+CGG | - | chr4_1:5423085-5423104 | None:intergenic | 15.0% |
| !! | AAATAAAATTATTCAACATG+TGG | - | chr4_1:5423348-5423367 | None:intergenic | 15.0% |
| !! | CTAACTATTAATGATAATAA+GGG | - | chr4_1:5423803-5423822 | None:intergenic | 15.0% |
| !! | ACTAACTATTAATGATAATA+AGG | - | chr4_1:5423804-5423823 | None:intergenic | 15.0% |
| !! | TTTATATATAGATGTTGATA+TGG | - | chr4_1:5424741-5424760 | None:intergenic | 15.0% |
| !!! | AAATGCAACTTTTTTATTGT+AGG | + | chr4_1:5421100-5421119 | Msa0531210:intron | 20.0% |
| !! | ATTTATGCAAAAAAAAGGAA+GGG | - | chr4_1:5421521-5421540 | None:intergenic | 20.0% |
| !! | AATTTATGCAAAAAAAAGGA+AGG | - | chr4_1:5421522-5421541 | None:intergenic | 20.0% |
| !!! | CTTTTTTTTGCATAAATTCA+GGG | + | chr4_1:5421524-5421543 | Msa0531210:CDS | 20.0% |
| !!! | GAAACATTGATTGATTTTAA+TGG | + | chr4_1:5421566-5421585 | Msa0531210:intron | 20.0% |
| !! | AATTCTAAACACAAACAAAT+AGG | + | chr4_1:5421741-5421760 | Msa0531210:intron | 20.0% |
| !!! | AGAAGTAATTTGCTAATTTT+TGG | + | chr4_1:5421950-5421969 | Msa0531210:intron | 20.0% |
| !! | ATTGAAACAAAATGAATGAA+AGG | - | chr4_1:5422233-5422252 | None:intergenic | 20.0% |
| !!! | TTTCAGAGAAAATAAACTTT+TGG | - | chr4_1:5422311-5422330 | None:intergenic | 20.0% |
| !!! | AATTAAATGGTTTTATGATG+TGG | + | chr4_1:5422501-5422520 | Msa0531210:intron | 20.0% |
| !! | TTCAGTAATATACAAATTTC+AGG | + | chr4_1:5422602-5422621 | Msa0531210:exon | 20.0% |
| !!! | TAATATACAAATTTCAGGTT+AGG | + | chr4_1:5422607-5422626 | Msa0531210:intron | 20.0% |
| !!! | TATATCAAAGATTTTGTAGA+AGG | + | chr4_1:5422753-5422772 | Msa0531210:intron | 20.0% |
| !! | TGATTCATCTCTATTAATAA+TGG | + | chr4_1:5422876-5422895 | Msa0531210:intron | 20.0% |
| !!! | GAAAAGAATTTTATCTTTAG+AGG | + | chr4_1:5423097-5423116 | Msa0531210:intron | 20.0% |
| !! | CACTATTAATTAATAACCAA+GGG | - | chr4_1:5423280-5423299 | None:intergenic | 20.0% |
| !! | TCACTATTAATTAATAACCA+AGG | - | chr4_1:5423281-5423300 | None:intergenic | 20.0% |
| !!! | AGACTTTACTATTTTTCATT+TGG | + | chr4_1:5423425-5423444 | Msa0531210:intron | 20.0% |
| !!! | GACTTTACTATTTTTCATTT+GGG | + | chr4_1:5423426-5423445 | Msa0531210:intron | 20.0% |
| !!! | CTAAATGATATAATTTTTGC+CGG | + | chr4_1:5423564-5423583 | Msa0531210:intron | 20.0% |
| !! | AAATGAATATAATCATAGTC+CGG | - | chr4_1:5423586-5423605 | None:intergenic | 20.0% |
| !! | TATTCAATATATAGACCATA+AGG | + | chr4_1:5424245-5424264 | Msa0531210:three_prime_UTR | 20.0% |
| !! | TATAAAACAAAGTTACCTTA+TGG | - | chr4_1:5424263-5424282 | None:intergenic | 20.0% |
| !! | TTATACTTAAATGTCCAAAA+AGG | - | chr4_1:5424366-5424385 | None:intergenic | 20.0% |
| !!! | TTAAATTTGATAGCTATATC+AGG | - | chr4_1:5424667-5424686 | None:intergenic | 20.0% |
| !! | TATGAACTATTAATATCCAA+AGG | - | chr4_1:5424817-5424836 | None:intergenic | 20.0% |
| !!! | TTATTATAATCGAATTTTGC+AGG | + | chr4_1:5424853-5424872 | Msa0531210:three_prime_UTR | 20.0% |
| !!! | ATTTTGTTGTTTTGGTCATT+TGG | + | chr4_1:5421202-5421221 | Msa0531210:intron | 25.0% |
| !! | TTGAATTTCTGAAAAAGCAA+TGG | - | chr4_1:5421474-5421493 | None:intergenic | 25.0% |
| !!! | TGCTTTTTCAGAAATTCAAA+AGG | + | chr4_1:5421475-5421494 | Msa0531210:CDS | 25.0% |
| !!! | GCTTTTTCAGAAATTCAAAA+GGG | + | chr4_1:5421476-5421495 | Msa0531210:CDS | 25.0% |
| ! | CCTGAATTTATGCAAAAAAA+AGG | - | chr4_1:5421526-5421545 | None:intergenic | 25.0% |
| !!! | CCTTTTTTTTGCATAAATTC+AGG | + | chr4_1:5421523-5421542 | Msa0531210:CDS | 25.0% |
| !! | AAAACTTAAGTCTCTTTTTG+AGG | + | chr4_1:5421797-5421816 | Msa0531210:intron | 25.0% |
| !! | AAACTTAAGTCTCTTTTTGA+GGG | + | chr4_1:5421798-5421817 | Msa0531210:intron | 25.0% |
| ! | AGACTAGATAATTCTTTCTT+TGG | + | chr4_1:5422036-5422055 | Msa0531210:intron | 25.0% |
| ! | GATAATTCTTTCTTTGGTAA+AGG | + | chr4_1:5422042-5422061 | Msa0531210:intron | 25.0% |
| !!! | TCTCTGAAATTGTTTAATGT+AGG | + | chr4_1:5422322-5422341 | Msa0531210:intron | 25.0% |
| !! | TTTTCATTGTAGTTGATCAA+AGG | + | chr4_1:5422664-5422683 | Msa0531210:intron | 25.0% |
| ! | AAATCTTTGATATAGCATCA+TGG | - | chr4_1:5422747-5422766 | None:intergenic | 25.0% |
| ! | TGCGAAGAAAATTTAGAAAA+TGG | - | chr4_1:5422779-5422798 | None:intergenic | 25.0% |
| !! | TTTCTAAATTTTCTTCGCAT+TGG | + | chr4_1:5422780-5422799 | Msa0531210:intron | 25.0% |
| ! | TATTTGTCTCTCTTTACTAT+AGG | + | chr4_1:5423363-5423382 | Msa0531210:intron | 25.0% |
| ! | ATTTGTCTCTCTTTACTATA+GGG | + | chr4_1:5423364-5423383 | Msa0531210:intron | 25.0% |
| ! | CACAAATATGGTTAGAAAAT+AGG | - | chr4_1:5423513-5423532 | None:intergenic | 25.0% |
| !! | CTATTTTCTAACCATATTTG+TGG | + | chr4_1:5423511-5423530 | Msa0531210:intron | 25.0% |
| !! | ACACTTAACATTTCTAAGAA+CGG | + | chr4_1:5423777-5423796 | Msa0531210:intron | 25.0% |
| !!! | CTGTTTTTAGTTTAAGTTGT+TGG | + | chr4_1:5423929-5423948 | Msa0531210:intron | 25.0% |
| ! | TACCATAACTCTAACAAATA+GGG | - | chr4_1:5423962-5423981 | None:intergenic | 25.0% |
| ! | ATACCATAACTCTAACAAAT+AGG | - | chr4_1:5423963-5423982 | None:intergenic | 25.0% |
| ! | ATAAAAGGCAATGTCAATTT+CGG | - | chr4_1:5424163-5424182 | None:intergenic | 25.0% |
| ! | AAGAAGAATCAGACAATAAA+AGG | - | chr4_1:5424178-5424197 | None:intergenic | 25.0% |
| ! | ATACCATGACATAATAACAT+TGG | + | chr4_1:5424293-5424312 | Msa0531210:intron | 25.0% |
| ! | ATAACATTGGAGATAATTAG+TGG | + | chr4_1:5424306-5424325 | Msa0531210:intron | 25.0% |
| ! | TAACATTGGAGATAATTAGT+GGG | + | chr4_1:5424307-5424326 | Msa0531210:intron | 25.0% |
| ! | TACCTATTTGAATTGTTTCA+CGG | + | chr4_1:5424400-5424419 | Msa0531210:intron | 25.0% |
| !! | ATATCAGGTACACATTTTAT+TGG | - | chr4_1:5424652-5424671 | None:intergenic | 25.0% |
| ! | ACTATTAATATCCAAAGGAA+AGG | - | chr4_1:5424812-5424831 | None:intergenic | 25.0% |
| ! | TATTTCCTTTCTTACTTTGT+CGG | + | chr4_1:5424898-5424917 | Msa0531210:three_prime_UTR | 25.0% |
| TTATAGACCATCCATTCATT+TGG | - | chr4_1:5420960-5420979 | None:intergenic | 30.0% | |
| !! | TTGGTCATTTGGTCTTAAAT+TGG | + | chr4_1:5421213-5421232 | Msa0531210:intron | 30.0% |
| ! | CTCTACTTCCTTTAATTTCT+TGG | + | chr4_1:5421431-5421450 | Msa0531210:intron | 30.0% |
| CACACAAACCAAGAAATTAA+AGG | - | chr4_1:5421442-5421461 | None:intergenic | 30.0% | |
| ! | ATTTCTGAAAAAGCAATGGA+AGG | - | chr4_1:5421470-5421489 | None:intergenic | 30.0% |
| ! | AAATTCAGGGTATCTATAAG+AGG | + | chr4_1:5421537-5421556 | Msa0531210:CDS | 30.0% |
| ATTGGAGAGAAGTTTGATAA+TGG | + | chr4_1:5421686-5421705 | Msa0531210:intron | 30.0% | |
| ! | GAGACTTAAGTTTTCAAACA+GGG | - | chr4_1:5421791-5421810 | None:intergenic | 30.0% |
| ! | AGAGACTTAAGTTTTCAAAC+AGG | - | chr4_1:5421792-5421811 | None:intergenic | 30.0% |
| CTTCACAAAAGATGCTAATA+GGG | - | chr4_1:5422081-5422100 | None:intergenic | 30.0% | |
| ACTTCACAAAAGATGCTAAT+AGG | - | chr4_1:5422082-5422101 | None:intergenic | 30.0% | |
| ! | AGGTTTCGCTTTAAGTTATT+TGG | + | chr4_1:5422342-5422361 | Msa0531210:intron | 30.0% |
| ! | TCAATTCTTTTCAGTTGTGA+TGG | + | chr4_1:5422424-5422443 | Msa0531210:CDS | 30.0% |
| !!! | TAAATGGTTTTATGATGTGG+AGG | + | chr4_1:5422504-5422523 | Msa0531210:intron | 30.0% |
| ATAAATTGATCCTGCAACAA+AGG | - | chr4_1:5422553-5422572 | None:intergenic | 30.0% | |
| AGAAATGAACCAAAAGACAA+AGG | - | chr4_1:5422635-5422654 | None:intergenic | 30.0% | |
| !!! | ATCAAAGGTGTGCAATTTTT+TGG | + | chr4_1:5422679-5422698 | Msa0531210:intron | 30.0% |
| GATGTGAATTAGTTACTTGA+TGG | + | chr4_1:5423168-5423187 | Msa0531210:intron | 30.0% | |
| ATAGATCAGATCCACAAATA+TGG | - | chr4_1:5423525-5423544 | None:intergenic | 30.0% | |
| TTCCAGAATATGTAATGAGT+GGG | - | chr4_1:5423838-5423857 | None:intergenic | 30.0% | |
| ! | CATTACATATTCTGGAAGTA+TGG | + | chr4_1:5423841-5423860 | Msa0531210:intron | 30.0% |
| GATGACATCATTTACTGAAT+TGG | - | chr4_1:5423986-5424005 | None:intergenic | 30.0% | |
| CTCTTAATATGATTCTTCGA+AGG | + | chr4_1:5424010-5424029 | Msa0531210:intron | 30.0% | |
| TTCATGGACAATTTCTTTAG+TGG | - | chr4_1:5424107-5424126 | None:intergenic | 30.0% | |
| ACTAAAGAAATTGTCCATGA+AGG | + | chr4_1:5424106-5424125 | Msa0531210:intron | 30.0% | |
| AGCTTCAAAATCTGCAAAAA+TGG | - | chr4_1:5424203-5424222 | None:intergenic | 30.0% | |
| !!! | GTAACTTTGTTTTATACTCG+AGG | + | chr4_1:5424267-5424286 | Msa0531210:intron | 30.0% |
| TCTCCAATGTTATTATGTCA+TGG | - | chr4_1:5424299-5424318 | None:intergenic | 30.0% | |
| !! | CATTTGATTTGAGGATAAAG+AGG | - | chr4_1:5424588-5424607 | None:intergenic | 30.0% |
| !! | AATGTCACTTGCAAATTTTG+AGG | + | chr4_1:5424604-5424623 | Msa0531210:three_prime_UTR | 30.0% |
| TCTAGTTAAAGCGTATACAT+AGG | - | chr4_1:5424788-5424807 | None:intergenic | 30.0% | |
| ATAAACCGACAAAGTAAGAA+AGG | - | chr4_1:5424906-5424925 | None:intergenic | 30.0% | |
| !!! | CTTTGTCGGTTTATATTTTG+AGG | + | chr4_1:5424912-5424931 | Msa0531210:three_prime_UTR | 30.0% |
| CTATTCTCTTACAATCTCTC+TGG | + | chr4_1:5420890-5420909 | Msa0531210:CDS | 35.0% | |
| GATACCACAGGAAAAAAATG+AGG | + | chr4_1:5420929-5420948 | Msa0531210:CDS | 35.0% | |
| CAGAAATTCAAAAGGGATGA+AGG | + | chr4_1:5421483-5421502 | Msa0531210:CDS | 35.0% | |
| ! | AGGGTATCTATAAGAGGTAA+TGG | + | chr4_1:5421543-5421562 | Msa0531210:intron | 35.0% |
| GGGTATCTATAAGAGGTAAT+GGG | + | chr4_1:5421544-5421563 | Msa0531210:intron | 35.0% | |
| AAACACAAACAAATAGGCAC+AGG | + | chr4_1:5421747-5421766 | Msa0531210:intron | 35.0% | |
| TGTTGAGTTACTCTTTGTGT+AGG | - | chr4_1:5421887-5421906 | None:intergenic | 35.0% | |
| !! | TCTTTTCAGTTGTGATGGAA+AGG | + | chr4_1:5422429-5422448 | Msa0531210:CDS | 35.0% |
| !! | ATTTTTGTGATTTGCCTTGC+TGG | + | chr4_1:5422708-5422727 | Msa0531210:intron | 35.0% |
| GATTAAGCATAAAACCAGCA+AGG | - | chr4_1:5422725-5422744 | None:intergenic | 35.0% | |
| !! | TTGAAGTACTGCTTGATGTT+TGG | + | chr4_1:5423144-5423163 | Msa0531210:intron | 35.0% |
| !! | GCTTTTCTTTTTTGCAAGAG+AGG | + | chr4_1:5423448-5423467 | Msa0531210:intron | 35.0% |
| CTTCCAGAATATGTAATGAG+TGG | - | chr4_1:5423839-5423858 | None:intergenic | 35.0% | |
| ! | GTCCCTATTTGTTAGAGTTA+TGG | + | chr4_1:5423957-5423976 | Msa0531210:intron | 35.0% |
| TTGGAGATAATTAGTGGGAA+AGG | + | chr4_1:5424312-5424331 | Msa0531210:intron | 35.0% | |
| TGGAGATAATTAGTGGGAAA+GGG | + | chr4_1:5424313-5424332 | Msa0531210:intron | 35.0% | |
| !! | AAAGGTTGAGAGAGTGTTAT+GGG | - | chr4_1:5424348-5424367 | None:intergenic | 35.0% |
| !! | AAAAGGTTGAGAGAGTGTTA+TGG | - | chr4_1:5424349-5424368 | None:intergenic | 35.0% |
| ! | TAACACTCTCTCAACCTTTT+TGG | + | chr4_1:5424349-5424368 | Msa0531210:intron | 35.0% |
| AGCCGTGAAACAATTCAAAT+AGG | - | chr4_1:5424405-5424424 | None:intergenic | 35.0% | |
| TTGAATTGTTTCACGGCTTT+AGG | + | chr4_1:5424407-5424426 | Msa0531210:intron | 35.0% | |
| TGTGTATCTAGTAGTTGCAA+TGG | - | chr4_1:5424459-5424478 | None:intergenic | 35.0% | |
| !! | TGCAAGTGACATTTGATTTG+AGG | - | chr4_1:5424597-5424616 | None:intergenic | 35.0% |
| GAAGCTAAAACGATATTCAG+AGG | - | chr4_1:5424719-5424738 | None:intergenic | 35.0% | |
| GTTCATGAGAAACGAACATT+TGG | - | chr4_1:5424766-5424785 | None:intergenic | 35.0% | |
| TTTAACTAGAGCCTTTCCTT+TGG | + | chr4_1:5424798-5424817 | Msa0531210:three_prime_UTR | 35.0% | |
| ! | TTTTTCCAGAACGATACCAC+AGG | + | chr4_1:5420917-5420936 | Msa0531210:CDS | 40.0% |
| ! | TTTTTCCTGTGGTATCGTTC+TGG | - | chr4_1:5420925-5420944 | None:intergenic | 40.0% |
| !!! | GTTGCCTCATTTTTTTCCTG+TGG | - | chr4_1:5420936-5420955 | None:intergenic | 40.0% |
| ATGAGGCAACTCCAAATGAA+TGG | + | chr4_1:5420946-5420965 | Msa0531210:CDS | 40.0% | |
| GAATGGATGGTCTATAACTC+AGG | + | chr4_1:5420963-5420982 | Msa0531210:CDS | 40.0% | |
| TGAGCACTCACATAGTGTTT+AGG | + | chr4_1:5421319-5421338 | Msa0531210:intron | 40.0% | |
| GAGCACTCACATAGTGTTTA+GGG | + | chr4_1:5421320-5421339 | Msa0531210:intron | 40.0% | |
| CATCTCATAACTACGTGAGA+AGG | - | chr4_1:5421404-5421423 | None:intergenic | 40.0% | |
| ! | CTGCACTTGGTAACAACAAA+AGG | - | chr4_1:5421626-5421645 | None:intergenic | 40.0% |
| !!! | CTTTTGTTGTTACCAAGTGC+AGG | + | chr4_1:5421624-5421643 | Msa0531210:intron | 40.0% |
| !! | TATGTTGATGAGTGCTGAAG+AGG | + | chr4_1:5421716-5421735 | Msa0531210:intron | 40.0% |
| AGTTACTCTTTGTGTAGGAC+AGG | - | chr4_1:5421882-5421901 | None:intergenic | 40.0% | |
| !! | GCATCTTTTGTGAAGTGCTA+AGG | + | chr4_1:5422086-5422105 | Msa0531210:intron | 40.0% |
| ! | ACTACTAGCTTATGCATGTG+AGG | + | chr4_1:5422579-5422598 | Msa0531210:CDS | 40.0% |
| ! | GGTTAGGTTCCTTTGTCTTT+TGG | + | chr4_1:5422623-5422642 | Msa0531210:intron | 40.0% |
| GGGTCTAATATGATACTGTG+CGG | + | chr4_1:5423384-5423403 | Msa0531210:intron | 40.0% | |
| GTCAGTAGTGTGTCAACATA+TGG | + | chr4_1:5423672-5423691 | Msa0531210:intron | 40.0% | |
| GACCCACTCATTACATATTC+TGG | + | chr4_1:5423833-5423852 | Msa0531210:intron | 40.0% | |
| GGCAACACTAAAATCCTTCA+TGG | - | chr4_1:5424123-5424142 | None:intergenic | 40.0% | |
| ! | GTTGCCTTCAAGTTACCTTA+TGG | + | chr4_1:5424137-5424156 | Msa0531210:intron | 40.0% |
| CAATGTCAATTTCGGCCATA+AGG | - | chr4_1:5424155-5424174 | None:intergenic | 40.0% | |
| GGAGATAATTAGTGGGAAAG+GGG | + | chr4_1:5424314-5424333 | Msa0531210:intron | 40.0% | |
| !! | TTGTTTCACGGCTTTAGGAT+TGG | + | chr4_1:5424412-5424431 | Msa0531210:intron | 40.0% |
| GCCTTTCTTCTCAAGTCATA+CGG | + | chr4_1:5424493-5424512 | Msa0531210:three_prime_UTR | 40.0% | |
| ACCGTATGACTTGAGAAGAA+AGG | - | chr4_1:5424497-5424516 | None:intergenic | 40.0% | |
| TACATGTGGGGTTATTTGTG+TGG | + | chr4_1:5424520-5424539 | Msa0531210:three_prime_UTR | 40.0% | |
| TCCGCGATTTATACTGGTAA+AGG | + | chr4_1:5424547-5424566 | Msa0531210:three_prime_UTR | 40.0% | |
| CCCTTTACCAGTATAAATCG+CGG | - | chr4_1:5424551-5424570 | None:intergenic | 40.0% | |
| CCGCGATTTATACTGGTAAA+GGG | + | chr4_1:5424548-5424567 | Msa0531210:three_prime_UTR | 40.0% | |
| GGCAACTCCAAATGAATGGA+TGG | + | chr4_1:5420950-5420969 | Msa0531210:CDS | 45.0% | |
| TCGGCCATAAGGTAACTTGA+AGG | - | chr4_1:5424144-5424163 | None:intergenic | 45.0% | |
| AGTCATACGGTGCATACATG+TGG | + | chr4_1:5424506-5424525 | Msa0531210:three_prime_UTR | 45.0% | |
| GTCATACGGTGCATACATGT+GGG | + | chr4_1:5424507-5424526 | Msa0531210:three_prime_UTR | 45.0% | |
| TCATACGGTGCATACATGTG+GGG | + | chr4_1:5424508-5424527 | Msa0531210:three_prime_UTR | 45.0% | |
| ATGTGGGGTTATTTGTGTGG+AGG | + | chr4_1:5424523-5424542 | Msa0531210:three_prime_UTR | 45.0% | |
| !!! | TAATTATCTTATTATAATTT+TGG | + | chr4_1:5423214-5423233 | Msa0531210:intron | 5.0% |
| CATCGTTCTTCACCTGCACT+TGG | - | chr4_1:5421639-5421658 | None:intergenic | 50.0% | |
| ! | ACAAGTGCTGCCTTTGTTGC+AGG | + | chr4_1:5422540-5422559 | Msa0531210:intron | 50.0% |
| GAGTATGTCTGCAATGCCCT+TGG | + | chr4_1:5423261-5423280 | Msa0531210:intron | 50.0% | |
| !! | GGCTTTAGGATTGGAGACTC+TGG | + | chr4_1:5424421-5424440 | Msa0531210:intron | 50.0% |
| GGAGGCTCCGCGATTTATAC+TGG | + | chr4_1:5424541-5424560 | Msa0531210:three_prime_UTR | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 5420883 | 5424944 | 5420883 | ID=Msa0531210;Name=Msa0531210 |
| chr4_1 | mRNA | 5420883 | 5424944 | 5420883 | ID=Msa0531210-mRNA-1;Parent=Msa0531210;Name=Msa0531210-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.8|0.83|1|0|0|6|585|90 |
| chr4_1 | exon | 5420883 | 5420984 | 5420883 | ID=Msa0531210-mRNA-1:exon:1694;Parent=Msa0531210-mRNA-1 |
| chr4_1 | exon | 5421465 | 5421558 | 5421465 | ID=Msa0531210-mRNA-1:exon:1695;Parent=Msa0531210-mRNA-1 |
| chr4_1 | exon | 5422422 | 5422450 | 5422422 | ID=Msa0531210-mRNA-1:exon:1696;Parent=Msa0531210-mRNA-1 |
| chr4_1 | exon | 5422562 | 5422623 | 5422562 | ID=Msa0531210-mRNA-1:exon:1697;Parent=Msa0531210-mRNA-1 |
| chr4_1 | exon | 5424212 | 5424266 | 5424212 | ID=Msa0531210-mRNA-1:exon:1698;Parent=Msa0531210-mRNA-1 |
| chr4_1 | exon | 5424429 | 5424944 | 5424429 | ID=Msa0531210-mRNA-1:exon:1699;Parent=Msa0531210-mRNA-1 |
| chr4_1 | CDS | 5420883 | 5420984 | 5420883 | ID=Msa0531210-mRNA-1:cds;Parent=Msa0531210-mRNA-1 |
| chr4_1 | CDS | 5421465 | 5421558 | 5421465 | ID=Msa0531210-mRNA-1:cds;Parent=Msa0531210-mRNA-1 |
| chr4_1 | CDS | 5422422 | 5422450 | 5422422 | ID=Msa0531210-mRNA-1:cds;Parent=Msa0531210-mRNA-1 |
| chr4_1 | CDS | 5422562 | 5422609 | 5422562 | ID=Msa0531210-mRNA-1:cds;Parent=Msa0531210-mRNA-1 |
| chr4_1 | three_prime_UTR | 5422610 | 5422623 | 5422610 | ID=Msa0531210-mRNA-1:three_prime_utr;Parent=Msa0531210-mRNA-1 |
| chr4_1 | three_prime_UTR | 5424212 | 5424266 | 5424212 | ID=Msa0531210-mRNA-1:three_prime_utr;Parent=Msa0531210-mRNA-1 |
| chr4_1 | three_prime_UTR | 5424429 | 5424944 | 5424429 | ID=Msa0531210-mRNA-1:three_prime_utr;Parent=Msa0531210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
