Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0802810 | Msa1315530 | 0.947416 | 7.018904e-106 | -8.615850e-47 |
| Msa0531210 | Msa0802810 | 0.943712 | 7.337035e-103 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 35 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGTAATATACAAATTTC+AGG | 0.187791 | 5_3:-17452735 | Msa0802810:intron |
| TATTTCCTTTCTTACTTTGT+CGG | 0.303938 | 5_3:-17450439 | Msa0802810:three_prime_UTR |
| TTTATATATAGATGTTGATA+TGG | 0.339606 | 5_3:+17450599 | None:intergenic |
| TTATAGACCATCCATTCATT+TGG | 0.360233 | 5_3:+17454374 | None:intergenic |
| TTAAATTTGATAGCTATATC+AGG | 0.360340 | 5_3:+17450673 | None:intergenic |
| CAGAAATTCAAAAGGGATGA+AGG | 0.374176 | 5_3:-17453854 | Msa0802810:CDS |
| TGCAAGTGACATTTGATTTG+AGG | 0.391666 | 5_3:+17450743 | None:intergenic |
| CTATTCTCTTACAATCTCTC+TGG | 0.420293 | 5_3:-17454441 | Msa0802810:CDS |
| TCCGCGATTTATACTGGTAA+AGG | 0.425844 | 5_3:-17450790 | Msa0802810:three_prime_UTR |
| GGCTTTAGGATTGGAGACTC+TGG | 0.432889 | 5_3:-17450916 | Msa0802810:intron |
| GTTCATGAGAAACGAACATT+TGG | 0.433246 | 5_3:+17450574 | None:intergenic |
| TATTCAATATATAGACCATA+AGG | 0.439287 | 5_3:-17451092 | Msa0802810:intron |
| CCGCGATTTATACTGGTAAA+GGG | 0.439289 | 5_3:-17450789 | Msa0802810:three_prime_UTR |
| TTTAACTAGAGCCTTTCCTT+TGG | 0.464265 | 5_3:-17450539 | Msa0802810:three_prime_UTR |
| GAATGGATGGTCTATAACTC+AGG | 0.479748 | 5_3:-17454368 | Msa0802810:intron |
| ATGAGGCAACTCCAAATGAA+TGG | 0.480703 | 5_3:-17454385 | Msa0802810:CDS |
| GGAGGCTCCGCGATTTATAC+TGG | 0.485199 | 5_3:-17450796 | Msa0802810:three_prime_UTR |
| GCCTTTCTTCTCAAGTCATA+CGG | 0.508836 | 5_3:-17450844 | Msa0802810:three_prime_UTR |
| ATAAACCGACAAAGTAAGAA+AGG | 0.510637 | 5_3:+17450434 | None:intergenic |
| CATTTGATTTGAGGATAAAG+AGG | 0.510651 | 5_3:+17450752 | None:intergenic |
| AAATTCAGGGTATCTATAAG+AGG | 0.523952 | 5_3:-17453800 | Msa0802810:intron |
| GTCATACGGTGCATACATGT+GGG | 0.540509 | 5_3:-17450830 | Msa0802810:three_prime_UTR |
| AGTCATACGGTGCATACATG+TGG | 0.552933 | 5_3:-17450831 | Msa0802810:three_prime_UTR |
| TACATGTGGGGTTATTTGTG+TGG | 0.573851 | 5_3:-17450817 | Msa0802810:three_prime_UTR |
| GGCAACTCCAAATGAATGGA+TGG | 0.584406 | 5_3:-17454381 | Msa0802810:CDS |
| ACTATTAATATCCAAAGGAA+AGG | 0.589242 | 5_3:+17450528 | None:intergenic |
| TCTAGTTAAAGCGTATACAT+AGG | 0.590929 | 5_3:+17450552 | None:intergenic |
| TGTGTATCTAGTAGTTGCAA+TGG | 0.592378 | 5_3:+17450881 | None:intergenic |
| GAAGCTAAAACGATATTCAG+AGG | 0.595773 | 5_3:+17450621 | None:intergenic |
| ATGTGGGGTTATTTGTGTGG+AGG | 0.607763 | 5_3:-17450814 | Msa0802810:three_prime_UTR |
| ACCGTATGACTTGAGAAGAA+AGG | 0.608857 | 5_3:+17450843 | None:intergenic |
| TATGAACTATTAATATCCAA+AGG | 0.612972 | 5_3:+17450523 | None:intergenic |
| ACTACTAGCTTATGCATGTG+AGG | 0.626348 | 5_3:-17452758 | Msa0802810:CDS |
| CCCTTTACCAGTATAAATCG+CGG | 0.661490 | 5_3:+17450789 | None:intergenic |
| TCATACGGTGCATACATGTG+GGG | 0.706711 | 5_3:-17450829 | Msa0802810:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTGATACAAAATATAA+TGG | + | chr5_3:17451794-17451813 | None:intergenic | 10.0% |
| !!! | TTTATATATATTTTTGTTAC+AGG | - | chr5_3:17451926-17451945 | Msa0802810:intron | 10.0% |
| !!! | TTATTTGAAGTTTAATTAAA+TGG | - | chr5_3:17452014-17452033 | Msa0802810:intron | 10.0% |
| !! | CAATTTATCAATAAAATTTA+AGG | - | chr5_3:17452465-17452484 | Msa0802810:intron | 10.0% |
| !!! | TTTTTTTTTTTACTTTTGAT+TGG | - | chr5_3:17453230-17453249 | Msa0802810:intron | 10.0% |
| !! | TTTCAAATTTATAGTGATTA+AGG | + | chr5_3:17450615-17450634 | None:intergenic | 15.0% |
| !!! | AAATACAAATTTTGTTGTTT+TGG | - | chr5_3:17450720-17450739 | Msa0802810:three_prime_UTR | 15.0% |
| !!! | TTTAAAAGTTACAATTTTGT+TGG | - | chr5_3:17450872-17450891 | Msa0802810:three_prime_UTR | 15.0% |
| !!! | AAACATTGATTGATTTTAAT+GGG | - | chr5_3:17451093-17451112 | Msa0802810:three_prime_UTR | 15.0% |
| !! | TGAAAGTTAAATTCAAAAAT+TGG | - | chr5_3:17451194-17451213 | Msa0802810:intron | 15.0% |
| !! | AGTAAAAAAAATAGACAAAA+AGG | + | chr5_3:17452335-17452354 | None:intergenic | 15.0% |
| !!! | ATAAAATTTAAGGTTGTTTA+AGG | - | chr5_3:17452475-17452494 | Msa0802810:intron | 15.0% |
| !!! | TTCTTTTCATTTCTAATTTA+CGG | + | chr5_3:17452611-17452630 | None:intergenic | 15.0% |
| !! | AAATAAAATTATTCAACATG+TGG | + | chr5_3:17452874-17452893 | None:intergenic | 15.0% |
| !! | CTAACTATTAATGATAATAA+GGG | + | chr5_3:17453329-17453348 | None:intergenic | 15.0% |
| !! | ACTAACTATTAATGATAATA+AGG | + | chr5_3:17453330-17453349 | None:intergenic | 15.0% |
| !! | TTTATATATAGATGTTGATA+TGG | + | chr5_3:17454267-17454286 | None:intergenic | 15.0% |
| !!! | AAATGCAACTTTTTTATTGT+AGG | - | chr5_3:17450632-17450651 | Msa0802810:three_prime_UTR | 20.0% |
| !! | ATTTATGCAAAAAAAAGGAA+GGG | + | chr5_3:17451047-17451066 | None:intergenic | 20.0% |
| !! | AATTTATGCAAAAAAAAGGA+AGG | + | chr5_3:17451048-17451067 | None:intergenic | 20.0% |
| !!! | CTTTTTTTTGCATAAATTCA+GGG | - | chr5_3:17451050-17451069 | Msa0802810:intron | 20.0% |
| !!! | GAAACATTGATTGATTTTAA+TGG | - | chr5_3:17451092-17451111 | Msa0802810:intron | 20.0% |
| !! | AATTCTAAACACAAACAAAT+AGG | - | chr5_3:17451267-17451286 | Msa0802810:intron | 20.0% |
| !!! | AGAAGTAATTTGCTAATTTT+TGG | - | chr5_3:17451476-17451495 | Msa0802810:intron | 20.0% |
| !! | ATTGAAACAAAATGAATGAA+AGG | + | chr5_3:17451759-17451778 | None:intergenic | 20.0% |
| !!! | TTTCAGAGAAAATAAACTTT+TGG | + | chr5_3:17451837-17451856 | None:intergenic | 20.0% |
| !!! | AATTAAATGGTTTTATGATG+TGG | - | chr5_3:17452027-17452046 | Msa0802810:intron | 20.0% |
| !! | TTCAGTAATATACAAATTTC+AGG | - | chr5_3:17452128-17452147 | Msa0802810:intron | 20.0% |
| !!! | TAATATACAAATTTCAGGTT+AGG | - | chr5_3:17452133-17452152 | Msa0802810:intron | 20.0% |
| !!! | TATATCAAAGATTTTGTAGA+AGG | - | chr5_3:17452279-17452298 | Msa0802810:intron | 20.0% |
| !! | TGATTCATCTCTATTAATAA+TGG | - | chr5_3:17452402-17452421 | Msa0802810:intron | 20.0% |
| !!! | GAAAAGAATTTTATCTTTAG+AGG | - | chr5_3:17452623-17452642 | Msa0802810:intron | 20.0% |
| !! | CACTATTAATTAATAACCAA+GGG | + | chr5_3:17452806-17452825 | None:intergenic | 20.0% |
| !! | TCACTATTAATTAATAACCA+AGG | + | chr5_3:17452807-17452826 | None:intergenic | 20.0% |
| !!! | AGACTTTACTATTTTTCATT+TGG | - | chr5_3:17452951-17452970 | Msa0802810:intron | 20.0% |
| !!! | GACTTTACTATTTTTCATTT+GGG | - | chr5_3:17452952-17452971 | Msa0802810:intron | 20.0% |
| !!! | CTAAATGATATAATTTTTGC+CGG | - | chr5_3:17453090-17453109 | Msa0802810:intron | 20.0% |
| !! | AAATGAATATAATCATAGTC+CGG | + | chr5_3:17453112-17453131 | None:intergenic | 20.0% |
| !! | TATTCAATATATAGACCATA+AGG | - | chr5_3:17453771-17453790 | Msa0802810:intron | 20.0% |
| !! | TATAAAACAAAGTTACCTTA+TGG | + | chr5_3:17453789-17453808 | None:intergenic | 20.0% |
| !! | TTATACTTAAATGTCCAAAA+AGG | + | chr5_3:17453892-17453911 | None:intergenic | 20.0% |
| !!! | TTAAATTTGATAGCTATATC+AGG | + | chr5_3:17454193-17454212 | None:intergenic | 20.0% |
| !! | TATGAACTATTAATATCCAA+AGG | + | chr5_3:17454343-17454362 | None:intergenic | 20.0% |
| !!! | TTATTATAATCGAATTTTGC+AGG | - | chr5_3:17454379-17454398 | Msa0802810:CDS | 20.0% |
| !!! | ATTTTGTTGTTTTGGTCATT+TGG | - | chr5_3:17450728-17450747 | Msa0802810:three_prime_UTR | 25.0% |
| !! | TTGAATTTCTGAAAAAGCAA+TGG | + | chr5_3:17451000-17451019 | None:intergenic | 25.0% |
| !!! | TGCTTTTTCAGAAATTCAAA+AGG | - | chr5_3:17451001-17451020 | Msa0802810:intron | 25.0% |
| !!! | GCTTTTTCAGAAATTCAAAA+GGG | - | chr5_3:17451002-17451021 | Msa0802810:intron | 25.0% |
| ! | CCTGAATTTATGCAAAAAAA+AGG | + | chr5_3:17451052-17451071 | None:intergenic | 25.0% |
| !!! | CCTTTTTTTTGCATAAATTC+AGG | - | chr5_3:17451049-17451068 | Msa0802810:intron | 25.0% |
| !! | AAAACTTAAGTCTCTTTTTG+AGG | - | chr5_3:17451323-17451342 | Msa0802810:intron | 25.0% |
| !! | AAACTTAAGTCTCTTTTTGA+GGG | - | chr5_3:17451324-17451343 | Msa0802810:intron | 25.0% |
| ! | AGACTAGATAATTCTTTCTT+TGG | - | chr5_3:17451562-17451581 | Msa0802810:intron | 25.0% |
| ! | GATAATTCTTTCTTTGGTAA+AGG | - | chr5_3:17451568-17451587 | Msa0802810:intron | 25.0% |
| !!! | TCTCTGAAATTGTTTAATGT+AGG | - | chr5_3:17451848-17451867 | Msa0802810:intron | 25.0% |
| !! | TTTTCATTGTAGTTGATCAA+AGG | - | chr5_3:17452190-17452209 | Msa0802810:intron | 25.0% |
| ! | AAATCTTTGATATAGCATCA+TGG | + | chr5_3:17452273-17452292 | None:intergenic | 25.0% |
| ! | TGCGAAGAAAATTTAGAAAA+TGG | + | chr5_3:17452305-17452324 | None:intergenic | 25.0% |
| !! | TTTCTAAATTTTCTTCGCAT+TGG | - | chr5_3:17452306-17452325 | Msa0802810:intron | 25.0% |
| ! | TATTTGTCTCTCTTTACTAT+AGG | - | chr5_3:17452889-17452908 | Msa0802810:intron | 25.0% |
| ! | ATTTGTCTCTCTTTACTATA+GGG | - | chr5_3:17452890-17452909 | Msa0802810:intron | 25.0% |
| ! | CACAAATATGGTTAGAAAAT+AGG | + | chr5_3:17453039-17453058 | None:intergenic | 25.0% |
| !! | CTATTTTCTAACCATATTTG+TGG | - | chr5_3:17453037-17453056 | Msa0802810:intron | 25.0% |
| !! | ACACTTAACATTTCTAAGAA+CGG | - | chr5_3:17453303-17453322 | Msa0802810:intron | 25.0% |
| !!! | CTGTTTTTAGTTTAAGTTGT+TGG | - | chr5_3:17453455-17453474 | Msa0802810:intron | 25.0% |
| ! | TACCATAACTCTAACAAATA+GGG | + | chr5_3:17453488-17453507 | None:intergenic | 25.0% |
| ! | ATACCATAACTCTAACAAAT+AGG | + | chr5_3:17453489-17453508 | None:intergenic | 25.0% |
| ! | ATAAAAGGCAATGTCAATTT+CGG | + | chr5_3:17453689-17453708 | None:intergenic | 25.0% |
| ! | AAGAAGAATCAGACAATAAA+AGG | + | chr5_3:17453704-17453723 | None:intergenic | 25.0% |
| ! | ATACCATGACATAATAACAT+TGG | - | chr5_3:17453819-17453838 | Msa0802810:CDS | 25.0% |
| ! | ATAACATTGGAGATAATTAG+TGG | - | chr5_3:17453832-17453851 | Msa0802810:CDS | 25.0% |
| ! | TAACATTGGAGATAATTAGT+GGG | - | chr5_3:17453833-17453852 | Msa0802810:CDS | 25.0% |
| ! | TACCTATTTGAATTGTTTCA+CGG | - | chr5_3:17453926-17453945 | Msa0802810:intron | 25.0% |
| !! | ATATCAGGTACACATTTTAT+TGG | + | chr5_3:17454178-17454197 | None:intergenic | 25.0% |
| ! | ACTATTAATATCCAAAGGAA+AGG | + | chr5_3:17454338-17454357 | None:intergenic | 25.0% |
| ! | TATTTCCTTTCTTACTTTGT+CGG | - | chr5_3:17454424-17454443 | Msa0802810:CDS | 25.0% |
| TTATAGACCATCCATTCATT+TGG | + | chr5_3:17450492-17450511 | None:intergenic | 30.0% | |
| !! | TTGGTCATTTGGTCTTAAAT+TGG | - | chr5_3:17450739-17450758 | Msa0802810:three_prime_UTR | 30.0% |
| ! | CTCTACTTCCTTTAATTTCT+TGG | - | chr5_3:17450957-17450976 | Msa0802810:intron | 30.0% |
| CACACAAACCAAGAAATTAA+AGG | + | chr5_3:17450968-17450987 | None:intergenic | 30.0% | |
| ! | ATTTCTGAAAAAGCAATGGA+AGG | + | chr5_3:17450996-17451015 | None:intergenic | 30.0% |
| ! | AAATTCAGGGTATCTATAAG+AGG | - | chr5_3:17451063-17451082 | Msa0802810:intron | 30.0% |
| ATTGGAGAGAAGTTTGATAA+TGG | - | chr5_3:17451212-17451231 | Msa0802810:intron | 30.0% | |
| ! | GAGACTTAAGTTTTCAAACA+GGG | + | chr5_3:17451317-17451336 | None:intergenic | 30.0% |
| ! | AGAGACTTAAGTTTTCAAAC+AGG | + | chr5_3:17451318-17451337 | None:intergenic | 30.0% |
| CTTCACAAAAGATGCTAATA+GGG | + | chr5_3:17451607-17451626 | None:intergenic | 30.0% | |
| ACTTCACAAAAGATGCTAAT+AGG | + | chr5_3:17451608-17451627 | None:intergenic | 30.0% | |
| ! | AGGTTTCGCTTTAAGTTATT+TGG | - | chr5_3:17451868-17451887 | Msa0802810:intron | 30.0% |
| ! | TCAATTCTTTTCAGTTGTGA+TGG | - | chr5_3:17451950-17451969 | Msa0802810:intron | 30.0% |
| !!! | TAAATGGTTTTATGATGTGG+AGG | - | chr5_3:17452030-17452049 | Msa0802810:intron | 30.0% |
| ATAAATTGATCCTGCAACAA+AGG | + | chr5_3:17452079-17452098 | None:intergenic | 30.0% | |
| AGAAATGAACCAAAAGACAA+AGG | + | chr5_3:17452161-17452180 | None:intergenic | 30.0% | |
| !!! | ATCAAAGGTGTGCAATTTTT+TGG | - | chr5_3:17452205-17452224 | Msa0802810:intron | 30.0% |
| GATGTGAATTAGTTACTTGA+TGG | - | chr5_3:17452694-17452713 | Msa0802810:intron | 30.0% | |
| ATAGATCAGATCCACAAATA+TGG | + | chr5_3:17453051-17453070 | None:intergenic | 30.0% | |
| TTCCAGAATATGTAATGAGT+GGG | + | chr5_3:17453364-17453383 | None:intergenic | 30.0% | |
| ! | CATTACATATTCTGGAAGTA+TGG | - | chr5_3:17453367-17453386 | Msa0802810:intron | 30.0% |
| GATGACATCATTTACTGAAT+TGG | + | chr5_3:17453512-17453531 | None:intergenic | 30.0% | |
| CTCTTAATATGATTCTTCGA+AGG | - | chr5_3:17453536-17453555 | Msa0802810:intron | 30.0% | |
| TTCATGGACAATTTCTTTAG+TGG | + | chr5_3:17453633-17453652 | None:intergenic | 30.0% | |
| ACTAAAGAAATTGTCCATGA+AGG | - | chr5_3:17453632-17453651 | Msa0802810:intron | 30.0% | |
| AGCTTCAAAATCTGCAAAAA+TGG | + | chr5_3:17453729-17453748 | None:intergenic | 30.0% | |
| !!! | GTAACTTTGTTTTATACTCG+AGG | - | chr5_3:17453793-17453812 | Msa0802810:intron | 30.0% |
| TCTCCAATGTTATTATGTCA+TGG | + | chr5_3:17453825-17453844 | None:intergenic | 30.0% | |
| !! | CATTTGATTTGAGGATAAAG+AGG | + | chr5_3:17454114-17454133 | None:intergenic | 30.0% |
| !! | AATGTCACTTGCAAATTTTG+AGG | - | chr5_3:17454130-17454149 | Msa0802810:intron | 30.0% |
| TCTAGTTAAAGCGTATACAT+AGG | + | chr5_3:17454314-17454333 | None:intergenic | 30.0% | |
| ATAAACCGACAAAGTAAGAA+AGG | + | chr5_3:17454432-17454451 | None:intergenic | 30.0% | |
| !!! | CTTTGTCGGTTTATATTTTG+AGG | - | chr5_3:17454438-17454457 | Msa0802810:CDS | 30.0% |
| CTATTCTCTTACAATCTCTC+TGG | - | chr5_3:17450422-17450441 | Msa0802810:three_prime_UTR | 35.0% | |
| GATACCACAGGAAAAAAATG+AGG | - | chr5_3:17450461-17450480 | Msa0802810:three_prime_UTR | 35.0% | |
| CAGAAATTCAAAAGGGATGA+AGG | - | chr5_3:17451009-17451028 | Msa0802810:intron | 35.0% | |
| ! | AGGGTATCTATAAGAGGTAA+TGG | - | chr5_3:17451069-17451088 | Msa0802810:intron | 35.0% |
| GGGTATCTATAAGAGGTAAT+GGG | - | chr5_3:17451070-17451089 | Msa0802810:intron | 35.0% | |
| AAACACAAACAAATAGGCAC+AGG | - | chr5_3:17451273-17451292 | Msa0802810:intron | 35.0% | |
| TGTTGAGTTACTCTTTGTGT+AGG | + | chr5_3:17451413-17451432 | None:intergenic | 35.0% | |
| !! | TCTTTTCAGTTGTGATGGAA+AGG | - | chr5_3:17451955-17451974 | Msa0802810:intron | 35.0% |
| !! | ATTTTTGTGATTTGCCTTGC+TGG | - | chr5_3:17452234-17452253 | Msa0802810:intron | 35.0% |
| GATTAAGCATAAAACCAGCA+AGG | + | chr5_3:17452251-17452270 | None:intergenic | 35.0% | |
| !! | TTGAAGTACTGCTTGATGTT+TGG | - | chr5_3:17452670-17452689 | Msa0802810:intron | 35.0% |
| !! | GCTTTTCTTTTTTGCAAGAG+AGG | - | chr5_3:17452974-17452993 | Msa0802810:intron | 35.0% |
| CTTCCAGAATATGTAATGAG+TGG | + | chr5_3:17453365-17453384 | None:intergenic | 35.0% | |
| ! | GTCCCTATTTGTTAGAGTTA+TGG | - | chr5_3:17453483-17453502 | Msa0802810:intron | 35.0% |
| TTGGAGATAATTAGTGGGAA+AGG | - | chr5_3:17453838-17453857 | Msa0802810:CDS | 35.0% | |
| TGGAGATAATTAGTGGGAAA+GGG | - | chr5_3:17453839-17453858 | Msa0802810:CDS | 35.0% | |
| !! | AAAGGTTGAGAGAGTGTTAT+GGG | + | chr5_3:17453874-17453893 | None:intergenic | 35.0% |
| !! | AAAAGGTTGAGAGAGTGTTA+TGG | + | chr5_3:17453875-17453894 | None:intergenic | 35.0% |
| ! | TAACACTCTCTCAACCTTTT+TGG | - | chr5_3:17453875-17453894 | Msa0802810:CDS | 35.0% |
| AGCCGTGAAACAATTCAAAT+AGG | + | chr5_3:17453931-17453950 | None:intergenic | 35.0% | |
| TTGAATTGTTTCACGGCTTT+AGG | - | chr5_3:17453933-17453952 | Msa0802810:intron | 35.0% | |
| TGTGTATCTAGTAGTTGCAA+TGG | + | chr5_3:17453985-17454004 | None:intergenic | 35.0% | |
| !! | TGCAAGTGACATTTGATTTG+AGG | + | chr5_3:17454123-17454142 | None:intergenic | 35.0% |
| GAAGCTAAAACGATATTCAG+AGG | + | chr5_3:17454245-17454264 | None:intergenic | 35.0% | |
| GTTCATGAGAAACGAACATT+TGG | + | chr5_3:17454292-17454311 | None:intergenic | 35.0% | |
| TTTAACTAGAGCCTTTCCTT+TGG | - | chr5_3:17454324-17454343 | Msa0802810:intron | 35.0% | |
| ! | TTTTTCCAGAACGATACCAC+AGG | - | chr5_3:17450449-17450468 | Msa0802810:three_prime_UTR | 40.0% |
| ! | TTTTTCCTGTGGTATCGTTC+TGG | + | chr5_3:17450457-17450476 | None:intergenic | 40.0% |
| !!! | GTTGCCTCATTTTTTTCCTG+TGG | + | chr5_3:17450468-17450487 | None:intergenic | 40.0% |
| ATGAGGCAACTCCAAATGAA+TGG | - | chr5_3:17450478-17450497 | Msa0802810:three_prime_UTR | 40.0% | |
| GAATGGATGGTCTATAACTC+AGG | - | chr5_3:17450495-17450514 | Msa0802810:three_prime_UTR | 40.0% | |
| TGAGCACTCACATAGTGTTT+AGG | - | chr5_3:17450845-17450864 | Msa0802810:three_prime_UTR | 40.0% | |
| GAGCACTCACATAGTGTTTA+GGG | - | chr5_3:17450846-17450865 | Msa0802810:three_prime_UTR | 40.0% | |
| CATCTCATAACTACGTGAGA+AGG | + | chr5_3:17450930-17450949 | None:intergenic | 40.0% | |
| ! | CTGCACTTGGTAACAACAAA+AGG | + | chr5_3:17451152-17451171 | None:intergenic | 40.0% |
| !!! | CTTTTGTTGTTACCAAGTGC+AGG | - | chr5_3:17451150-17451169 | Msa0802810:intron | 40.0% |
| !! | TATGTTGATGAGTGCTGAAG+AGG | - | chr5_3:17451242-17451261 | Msa0802810:intron | 40.0% |
| AGTTACTCTTTGTGTAGGAC+AGG | + | chr5_3:17451408-17451427 | None:intergenic | 40.0% | |
| !! | GCATCTTTTGTGAAGTGCTA+AGG | - | chr5_3:17451612-17451631 | Msa0802810:intron | 40.0% |
| ! | ACTACTAGCTTATGCATGTG+AGG | - | chr5_3:17452105-17452124 | Msa0802810:intron | 40.0% |
| ! | GGTTAGGTTCCTTTGTCTTT+TGG | - | chr5_3:17452149-17452168 | Msa0802810:intron | 40.0% |
| GGGTCTAATATGATACTGTG+CGG | - | chr5_3:17452910-17452929 | Msa0802810:CDS | 40.0% | |
| GTCAGTAGTGTGTCAACATA+TGG | - | chr5_3:17453198-17453217 | Msa0802810:intron | 40.0% | |
| GACCCACTCATTACATATTC+TGG | - | chr5_3:17453359-17453378 | Msa0802810:intron | 40.0% | |
| GGCAACACTAAAATCCTTCA+TGG | + | chr5_3:17453649-17453668 | None:intergenic | 40.0% | |
| ! | GTTGCCTTCAAGTTACCTTA+TGG | - | chr5_3:17453663-17453682 | Msa0802810:intron | 40.0% |
| CAATGTCAATTTCGGCCATA+AGG | + | chr5_3:17453681-17453700 | None:intergenic | 40.0% | |
| GGAGATAATTAGTGGGAAAG+GGG | - | chr5_3:17453840-17453859 | Msa0802810:CDS | 40.0% | |
| !! | TTGTTTCACGGCTTTAGGAT+TGG | - | chr5_3:17453938-17453957 | Msa0802810:intron | 40.0% |
| GCCTTTCTTCTCAAGTCATA+CGG | - | chr5_3:17454019-17454038 | Msa0802810:intron | 40.0% | |
| ACCGTATGACTTGAGAAGAA+AGG | + | chr5_3:17454023-17454042 | None:intergenic | 40.0% | |
| TACATGTGGGGTTATTTGTG+TGG | - | chr5_3:17454046-17454065 | Msa0802810:intron | 40.0% | |
| TCCGCGATTTATACTGGTAA+AGG | - | chr5_3:17454073-17454092 | Msa0802810:intron | 40.0% | |
| CCCTTTACCAGTATAAATCG+CGG | + | chr5_3:17454077-17454096 | None:intergenic | 40.0% | |
| CCGCGATTTATACTGGTAAA+GGG | - | chr5_3:17454074-17454093 | Msa0802810:intron | 40.0% | |
| GGCAACTCCAAATGAATGGA+TGG | - | chr5_3:17450482-17450501 | Msa0802810:three_prime_UTR | 45.0% | |
| TCGGCCATAAGGTAACTTGA+AGG | + | chr5_3:17453670-17453689 | None:intergenic | 45.0% | |
| AGTCATACGGTGCATACATG+TGG | - | chr5_3:17454032-17454051 | Msa0802810:intron | 45.0% | |
| GTCATACGGTGCATACATGT+GGG | - | chr5_3:17454033-17454052 | Msa0802810:intron | 45.0% | |
| TCATACGGTGCATACATGTG+GGG | - | chr5_3:17454034-17454053 | Msa0802810:intron | 45.0% | |
| ATGTGGGGTTATTTGTGTGG+AGG | - | chr5_3:17454049-17454068 | Msa0802810:intron | 45.0% | |
| !!! | TAATTATCTTATTATAATTT+TGG | - | chr5_3:17452740-17452759 | Msa0802810:exon | 5.0% |
| CATCGTTCTTCACCTGCACT+TGG | + | chr5_3:17451165-17451184 | None:intergenic | 50.0% | |
| ! | ACAAGTGCTGCCTTTGTTGC+AGG | - | chr5_3:17452066-17452085 | Msa0802810:intron | 50.0% |
| GAGTATGTCTGCAATGCCCT+TGG | - | chr5_3:17452787-17452806 | Msa0802810:intron | 50.0% | |
| !! | GGCTTTAGGATTGGAGACTC+TGG | - | chr5_3:17453947-17453966 | Msa0802810:intron | 50.0% |
| GGAGGCTCCGCGATTTATAC+TGG | - | chr5_3:17454067-17454086 | Msa0802810:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 17450415 | 17454470 | 17450415 | ID=Msa0802810;Name=Msa0802810 |
| chr5_3 | mRNA | 17450415 | 17454470 | 17450415 | ID=Msa0802810-mRNA-1;Parent=Msa0802810;Name=Msa0802810-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.8|0.83|1|0|0.33|6|585|90 |
| chr5_3 | exon | 17450415 | 17450930 | 17450415 | ID=Msa0802810-mRNA-1:exon:7252;Parent=Msa0802810-mRNA-1 |
| chr5_3 | exon | 17451093 | 17451147 | 17451093 | ID=Msa0802810-mRNA-1:exon:7251;Parent=Msa0802810-mRNA-1 |
| chr5_3 | exon | 17452736 | 17452797 | 17452736 | ID=Msa0802810-mRNA-1:exon:7250;Parent=Msa0802810-mRNA-1 |
| chr5_3 | exon | 17452909 | 17452937 | 17452909 | ID=Msa0802810-mRNA-1:exon:7249;Parent=Msa0802810-mRNA-1 |
| chr5_3 | exon | 17453801 | 17453894 | 17453801 | ID=Msa0802810-mRNA-1:exon:7248;Parent=Msa0802810-mRNA-1 |
| chr5_3 | exon | 17454369 | 17454470 | 17454369 | ID=Msa0802810-mRNA-1:exon:7247;Parent=Msa0802810-mRNA-1 |
| chr5_3 | CDS | 17454369 | 17454470 | 17454369 | ID=Msa0802810-mRNA-1:cds;Parent=Msa0802810-mRNA-1 |
| chr5_3 | CDS | 17453801 | 17453894 | 17453801 | ID=Msa0802810-mRNA-1:cds;Parent=Msa0802810-mRNA-1 |
| chr5_3 | CDS | 17452909 | 17452937 | 17452909 | ID=Msa0802810-mRNA-1:cds;Parent=Msa0802810-mRNA-1 |
| chr5_3 | CDS | 17452750 | 17452797 | 17452750 | ID=Msa0802810-mRNA-1:cds;Parent=Msa0802810-mRNA-1 |
| chr5_3 | three_prime_UTR | 17452736 | 17452749 | 17452736 | ID=Msa0802810-mRNA-1:three_prime_utr;Parent=Msa0802810-mRNA-1 |
| chr5_3 | three_prime_UTR | 17451093 | 17451147 | 17451093 | ID=Msa0802810-mRNA-1:three_prime_utr;Parent=Msa0802810-mRNA-1 |
| chr5_3 | three_prime_UTR | 17450415 | 17450930 | 17450415 | ID=Msa0802810-mRNA-1:three_prime_utr;Parent=Msa0802810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
