Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532010 | XP_003629907.1 | 97.842 | 139 | 3 | 0 | 1 | 139 | 1 | 139 | 2.70e-97 | 286 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532010 | sp|Q9FVI1|ADF2_PETHY | 84.173 | 139 | 22 | 0 | 1 | 139 | 1 | 139 | 9.76e-86 | 249 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532010 | G7L826 | 97.842 | 139 | 3 | 0 | 1 | 139 | 1 | 139 | 1.29e-97 | 286 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0532010 | Msa0532120 | 0.989611 | 7.191909e-179 | -8.615850e-47 |
| Msa0532010 | Msa0701860 | 0.992405 | 4.273868e-193 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532010 | MtrunA17_Chr8g0380291 | 97.842 | 139 | 3 | 0 | 1 | 139 | 1 | 139 | 2.48e-101 | 286 |
| Msa0532010 | MtrunA17_Chr2g0291571 | 88.489 | 139 | 16 | 0 | 1 | 139 | 1 | 139 | 6.14e-94 | 267 |
| Msa0532010 | MtrunA17_Chr1g0182501 | 79.137 | 139 | 29 | 0 | 1 | 139 | 1 | 139 | 2.54e-82 | 238 |
| Msa0532010 | MtrunA17_Chr8g0386651 | 72.464 | 138 | 36 | 1 | 1 | 138 | 1 | 136 | 4.14e-75 | 219 |
| Msa0532010 | MtrunA17_Chr1g0203211 | 69.565 | 138 | 40 | 1 | 1 | 138 | 25 | 160 | 1.12e-70 | 209 |
| Msa0532010 | MtrunA17_Chr5g0397641 | 68.841 | 138 | 41 | 1 | 1 | 138 | 1 | 136 | 3.18e-70 | 207 |
| Msa0532010 | MtrunA17_Chr7g0261251 | 59.124 | 137 | 56 | 0 | 3 | 139 | 10 | 146 | 1.59e-62 | 188 |
| Msa0532010 | MtrunA17_Chr4g0037251 | 58.519 | 135 | 56 | 0 | 4 | 138 | 8 | 142 | 1.38e-57 | 175 |
| Msa0532010 | MtrunA17_Chr1g0187771 | 56.522 | 138 | 60 | 0 | 2 | 139 | 10 | 147 | 3.75e-50 | 157 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532010 | AT3G46010.1 | 80.576 | 139 | 27 | 0 | 1 | 139 | 1 | 139 | 1.04e-86 | 249 |
| Msa0532010 | AT3G46010.2 | 80.435 | 138 | 27 | 0 | 2 | 139 | 13 | 150 | 6.36e-86 | 248 |
| Msa0532010 | AT5G59880.1 | 82.014 | 139 | 25 | 0 | 1 | 139 | 1 | 139 | 1.44e-85 | 246 |
| Msa0532010 | AT5G59890.1 | 80.576 | 139 | 27 | 0 | 1 | 139 | 1 | 139 | 4.51e-84 | 243 |
| Msa0532010 | AT3G46000.1 | 77.698 | 139 | 29 | 1 | 1 | 139 | 1 | 137 | 5.96e-79 | 229 |
| Msa0532010 | AT5G59890.3 | 79.545 | 132 | 27 | 0 | 8 | 139 | 1 | 132 | 1.67e-78 | 228 |
| Msa0532010 | AT5G59890.2 | 79.545 | 132 | 27 | 0 | 8 | 139 | 1 | 132 | 1.67e-78 | 228 |
| Msa0532010 | AT3G46000.2 | 76.978 | 139 | 30 | 1 | 1 | 139 | 20 | 156 | 5.26e-78 | 228 |
| Msa0532010 | AT3G46000.3 | 76.515 | 132 | 29 | 1 | 8 | 139 | 1 | 130 | 2.23e-73 | 215 |
| Msa0532010 | AT1G01750.1 | 69.784 | 139 | 42 | 0 | 1 | 139 | 1 | 139 | 3.69e-73 | 215 |
| Msa0532010 | AT4G00680.1 | 68.345 | 139 | 44 | 0 | 1 | 139 | 1 | 139 | 7.77e-73 | 214 |
| Msa0532010 | AT1G01750.2 | 69.565 | 138 | 42 | 0 | 2 | 139 | 7 | 144 | 2.96e-72 | 213 |
| Msa0532010 | AT4G00680.2 | 68.116 | 138 | 44 | 0 | 2 | 139 | 12 | 149 | 7.77e-72 | 212 |
| Msa0532010 | AT4G25590.1 | 70.290 | 138 | 39 | 1 | 1 | 138 | 1 | 136 | 2.65e-71 | 210 |
| Msa0532010 | AT5G52360.1 | 69.565 | 138 | 40 | 1 | 1 | 138 | 1 | 136 | 1.83e-70 | 208 |
| Msa0532010 | AT5G59880.2 | 71.223 | 139 | 25 | 1 | 1 | 139 | 1 | 124 | 2.36e-70 | 207 |
| Msa0532010 | AT4G25590.2 | 68.702 | 131 | 39 | 1 | 8 | 138 | 1 | 129 | 8.03e-66 | 196 |
| Msa0532010 | AT2G31200.1 | 54.745 | 137 | 62 | 0 | 3 | 139 | 10 | 146 | 2.44e-57 | 175 |
| Msa0532010 | AT4G34970.1 | 53.237 | 139 | 65 | 0 | 1 | 139 | 3 | 141 | 6.82e-55 | 169 |
| Msa0532010 | AT2G16700.1 | 53.333 | 135 | 63 | 0 | 4 | 138 | 8 | 142 | 6.45e-53 | 164 |
| Msa0532010 | AT2G16700.4 | 53.435 | 131 | 61 | 0 | 8 | 138 | 1 | 131 | 6.64e-51 | 158 |
| Msa0532010 | AT2G16700.2 | 53.435 | 131 | 61 | 0 | 8 | 138 | 1 | 131 | 6.64e-51 | 158 |
| Msa0532010 | AT3G45990.1 | 58.993 | 139 | 44 | 4 | 8 | 139 | 1 | 133 | 1.21e-49 | 155 |
| Msa0532010 | AT2G16700.3 | 51.724 | 87 | 42 | 0 | 4 | 90 | 8 | 94 | 1.81e-29 | 103 |
Find 82 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTTTCCTTCTTCGTAAAA+AGG | 0.195650 | 4_1:+6062480 | None:intergenic |
| AACTTCTAGTTTGTGTAATA+TGG | 0.207836 | 4_1:-6063080 | Msa0532010:three_prime_UTR |
| CATAAAAGTAACAAAGCATT+AGG | 0.216031 | 4_1:+6063105 | None:intergenic |
| TATCCTATCCATACAGAAAA+AGG | 0.261065 | 4_1:+6062914 | None:intergenic |
| TGACTGCAAGTTGAGGTTTA+TGG | 0.271763 | 4_1:-6063614 | Msa0532010:CDS |
| TGGTCTCAGCTAAGGGTTAA+AGG | 0.280838 | 4_1:-6062673 | Msa0532010:three_prime_UTR |
| CTCTCTCTTGAATCTATCTT+TGG | 0.282496 | 4_1:+6063251 | None:intergenic |
| TAAAAGAGTTGTATGGTTAT+TGG | 0.283322 | 4_1:+6062360 | None:intergenic |
| TCATTCTTCTCTTTCAATTA+TGG | 0.283630 | 4_1:-6064680 | Msa0532010:intron |
| AAAGGAGTTGAACGAGTTAA+AGG | 0.292541 | 4_1:-6062655 | Msa0532010:three_prime_UTR |
| CTCATGGTCTTGAGATTTCA+TGG | 0.315642 | 4_1:-6062553 | Msa0532010:three_prime_UTR |
| ATAAAAGTAACAAAGCATTA+GGG | 0.332932 | 4_1:+6063106 | None:intergenic |
| GGTCCTGTTTCACTTCAAAA+AGG | 0.352344 | 4_1:-6062946 | Msa0532010:three_prime_UTR |
| ATCAAAAGCAAAAGAATTGA+TGG | 0.352947 | 4_1:+6062744 | None:intergenic |
| AAATAAATGTTGTAAGTAAC+AGG | 0.355779 | 4_1:+6062876 | None:intergenic |
| ATGTTTGCTTTGCTTTGAAA+TGG | 0.368776 | 4_1:+6064765 | None:intergenic |
| CCGGGGTTGGGTAGCTCAAT+TGG | 0.369158 | 4_1:-6062693 | Msa0532010:three_prime_UTR |
| CTTGATCTGTAAAGGTTCAT+AGG | 0.388998 | 4_1:+6062398 | None:intergenic |
| TAGAATCTCAAATTACTCCT+AGG | 0.400479 | 4_1:-6062339 | Msa0532010:three_prime_UTR |
| TTCATGGTCTATTGTAATAT+AGG | 0.400965 | 4_1:-6062537 | Msa0532010:three_prime_UTR |
| GCATATCATAAAGCTAAGTT+TGG | 0.410663 | 4_1:+6062504 | None:intergenic |
| CTATGAACCTTTACAGATCA+AGG | 0.411073 | 4_1:-6062397 | Msa0532010:three_prime_UTR |
| GTTATGATATCCTATTCTAT+TGG | 0.419322 | 4_1:-6062842 | Msa0532010:three_prime_UTR |
| CTTCTAACCCTTGATGTGTC+AGG | 0.419707 | 4_1:+6063294 | None:intergenic |
| GAGATTCTAAAAGAGTTGTA+TGG | 0.434022 | 4_1:+6062353 | None:intergenic |
| TTCATAGGCTCAAATCTAGA+TGG | 0.444253 | 4_1:+6062413 | None:intergenic |
| GTTCATCATTTACAAGATTG+AGG | 0.446804 | 4_1:-6063566 | Msa0532010:CDS |
| AGCTCAATTGGTCTCAGCTA+AGG | 0.448050 | 4_1:-6062681 | Msa0532010:three_prime_UTR |
| TGTTTGCTTTGCTTTGAAAT+GGG | 0.449419 | 4_1:+6064766 | None:intergenic |
| GGGGCTCACCCCAGCAGAAA+AGG | 0.456032 | 4_1:+6063127 | None:intergenic |
| GAACAATCCTTGATCTGTAA+AGG | 0.457213 | 4_1:+6062390 | None:intergenic |
| GCACTCATCAGCAGGAAGGC+AGG | 0.460234 | 4_1:+6063477 | None:intergenic |
| GCAACTGATCCTACTGAGAT+TGG | 0.468027 | 4_1:-6063201 | Msa0532010:CDS |
| ACTGTTGGAGATCATTTAGT+TGG | 0.469715 | 4_1:+6063155 | None:intergenic |
| TAGTAATCAACCAATAGAAT+AGG | 0.470521 | 4_1:+6062832 | None:intergenic |
| GAAGGTCTCCTGACACATCA+AGG | 0.471655 | 4_1:-6063302 | Msa0532010:intron |
| TTACAGGCAAATGCGGCATC+CGG | 0.477481 | 4_1:-6063652 | Msa0532010:intron |
| ATCGGTGGAAGCGGAGGAGA+AGG | 0.496225 | 4_1:+6064702 | None:intergenic |
| GTCATCATGGACCGCCATAC+CGG | 0.500234 | 4_1:+6063633 | None:intergenic |
| ACCTCAACTTGCAGTCATCA+TGG | 0.504088 | 4_1:+6063620 | None:intergenic |
| TATGCCTCATTTATGTTGAG+TGG | 0.510069 | 4_1:-6063032 | Msa0532010:three_prime_UTR |
| AGATTCAAGAGAGAGCTTGA+TGG | 0.510719 | 4_1:-6063243 | Msa0532010:CDS |
| GCATAGCGGCACTCATCAGC+AGG | 0.511636 | 4_1:+6063469 | None:intergenic |
| GGCAAATGCGGCATCCGGTA+TGG | 0.514841 | 4_1:-6063647 | Msa0532010:CDS |
| CAAGTCATTGTGGAGAAGCT+TGG | 0.515016 | 4_1:-6063532 | Msa0532010:CDS |
| AGAATCTCAAATTACTCCTA+GGG | 0.515581 | 4_1:-6062338 | Msa0532010:three_prime_UTR |
| TAAAAGTAACAAAGCATTAG+GGG | 0.517509 | 4_1:+6063107 | None:intergenic |
| AAGGCAATGTTCCCAAAAGC+AGG | 0.520698 | 4_1:-6063420 | Msa0532010:CDS |
| AGAAGAATGATCGGTGGAAG+CGG | 0.534770 | 4_1:+6064693 | None:intergenic |
| TTATGGAGCTCAAGGCGAAA+AGG | 0.536997 | 4_1:-6063597 | Msa0532010:CDS |
| ACCATGAGTGTCCTTGAACT+CGG | 0.542503 | 4_1:+6062568 | None:intergenic |
| GATTATGAGTTTATGACTGA+AGG | 0.546901 | 4_1:-6063439 | Msa0532010:CDS |
| CAAATTCAACTTATAAGCAT+AGG | 0.548192 | 4_1:+6063000 | None:intergenic |
| TCCGAGTTCAAGGACACTCA+TGG | 0.553300 | 4_1:-6062569 | Msa0532010:three_prime_UTR |
| GTTGAGGTTTATGGAGCTCA+AGG | 0.554455 | 4_1:-6063605 | Msa0532010:CDS |
| AATTGTTCGTAACCTTCGAC+GGG | 0.561631 | 4_1:+6063505 | None:intergenic |
| AAATTGTTCGTAACCTTCGA+CGG | 0.562726 | 4_1:+6063504 | None:intergenic |
| GCAGAAAAGGAAGCCACTGT+TGG | 0.569013 | 4_1:+6063140 | None:intergenic |
| GCTCAATTGGTCTCAGCTAA+GGG | 0.577442 | 4_1:-6062680 | Msa0532010:three_prime_UTR |
| TGGAGATCATTTAGTTGGCA+CGG | 0.583240 | 4_1:+6063160 | None:intergenic |
| TAAATGTTGTAAGTAACAGG+TGG | 0.583911 | 4_1:+6062879 | None:intergenic |
| TAGGCTCAAATCTAGATGGA+AGG | 0.586490 | 4_1:+6062417 | None:intergenic |
| AAGCTTGGCGAGCCCGTCGA+AGG | 0.586923 | 4_1:-6063517 | Msa0532010:CDS |
| GGAAGCGGAGGAGAAGGAGA+AGG | 0.589223 | 4_1:+6064708 | None:intergenic |
| TCCATGATGACTGCAAGTTG+AGG | 0.591374 | 4_1:-6063621 | Msa0532010:CDS |
| AATGCCACTCAACATAAATG+AGG | 0.596164 | 4_1:+6063028 | None:intergenic |
| AAGGTCTCCTGACACATCAA+GGG | 0.598732 | 4_1:-6063301 | Msa0532010:CDS |
| ATGGTCTATTGTAATATAGG+CGG | 0.606950 | 4_1:-6062534 | Msa0532010:three_prime_UTR |
| AGTTAAAGGACTTCAAACTC+TGG | 0.612443 | 4_1:-6062641 | Msa0532010:three_prime_UTR |
| TGTCTAGAAGAAACTTCCCT+AGG | 0.614779 | 4_1:+6062322 | None:intergenic |
| AATTGAAAGAGAAGAATGAT+CGG | 0.621391 | 4_1:+6064684 | None:intergenic |
| AGCGGCACTCATCAGCAGGA+AGG | 0.621421 | 4_1:+6063473 | None:intergenic |
| TGAAAGAGAAGAATGATCGG+TGG | 0.621821 | 4_1:+6064687 | None:intergenic |
| ACATCAAGACCAATCTCAGT+AGG | 0.622765 | 4_1:+6063192 | None:intergenic |
| AAATGTTGTAAGTAACAGGT+GGG | 0.622786 | 4_1:+6062880 | None:intergenic |
| AACTAAATGATCTCCAACAG+TGG | 0.628963 | 4_1:-6063153 | Msa0532010:exon |
| CCAATTGAGCTACCCAACCC+CGG | 0.631662 | 4_1:+6062693 | None:intergenic |
| AGAATGATCGGTGGAAGCGG+AGG | 0.632387 | 4_1:+6064696 | None:intergenic |
| GAAACAGAAACAAGTCATTG+TGG | 0.633781 | 4_1:-6063542 | Msa0532010:CDS |
| AAATGCGGCATCCGGTATGG+CGG | 0.649579 | 4_1:-6063644 | Msa0532010:CDS |
| AAAAGTAACAAAGCATTAGG+GGG | 0.653891 | 4_1:+6063108 | None:intergenic |
| TCAAGGCGAAAAGGACACAC+AGG | 0.692606 | 4_1:-6063588 | Msa0532010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGAATTAAATTTTATGTTG+TGG | + | chr4_1:6062850-6062869 | None:intergenic | 15.0% |
| !! | TAAATCTTAAAAACCTAATT+AGG | - | chr4_1:6062995-6063014 | Msa0532010:three_prime_UTR | 15.0% |
| !! | AAATCTTAAAAACCTAATTA+GGG | - | chr4_1:6062996-6063015 | Msa0532010:three_prime_UTR | 15.0% |
| !!! | ACTTATTTTTTTAGCTATTT+TGG | - | chr4_1:6063085-6063104 | Msa0532010:three_prime_UTR | 15.0% |
| !!! | CTTATTTTTTTAGCTATTTT+GGG | - | chr4_1:6063086-6063105 | Msa0532010:three_prime_UTR | 15.0% |
| !!! | TTATTTTTTTAGCTATTTTG+GGG | - | chr4_1:6063087-6063106 | Msa0532010:three_prime_UTR | 15.0% |
| !! | TACAATCATTTATTTATTTG+AGG | - | chr4_1:6063363-6063382 | Msa0532010:intron | 15.0% |
| !!! | ACAACATTTATTTTTTTGTT+TGG | - | chr4_1:6064264-6064283 | Msa0532010:intron | 15.0% |
| !! | AAATGATAAAGTAAACAGAA+CGG | + | chr4_1:6062560-6062579 | None:intergenic | 20.0% |
| !!! | ATTAGGTTTGCTTAAAAAAT+GGG | + | chr4_1:6062690-6062709 | None:intergenic | 20.0% |
| !! | ACAGTAATCAAATAATCATT+AGG | + | chr4_1:6062707-6062726 | None:intergenic | 20.0% |
| !! | TTTATGTTGTGGTATAAAAA+TGG | + | chr4_1:6062839-6062858 | None:intergenic | 20.0% |
| !! | TATATATGTTCTATTTGGAT+TGG | + | chr4_1:6062951-6062970 | None:intergenic | 20.0% |
| !! | TTGCATATATATGTTCTATT+TGG | + | chr4_1:6062956-6062975 | None:intergenic | 20.0% |
| !! | TAATAATTTAACTAAGCACT+TGG | - | chr4_1:6063030-6063049 | Msa0532010:three_prime_UTR | 20.0% |
| !!! | AATAAGTTGATCAAAACTTA+TGG | - | chr4_1:6063113-6063132 | Msa0532010:three_prime_UTR | 20.0% |
| !! | TGAAGTATACTTCAAAAATA+AGG | - | chr4_1:6063232-6063251 | Msa0532010:CDS | 20.0% |
| !! | GAAGTATACTTCAAAAATAA+GGG | - | chr4_1:6063233-6063252 | Msa0532010:CDS | 20.0% |
| !!! | ATAAAAGTAACAAAGCATTA+GGG | + | chr4_1:6064027-6064046 | None:intergenic | 20.0% |
| !!! | TAATATATCCTTTTTCTGTA+TGG | - | chr4_1:6064208-6064227 | Msa0532010:intron | 20.0% |
| !! | AAATAAATGTTGTAAGTAAC+AGG | + | chr4_1:6064257-6064276 | None:intergenic | 20.0% |
| !!! | TTTTGCTTTTGATTATATGA+TGG | - | chr4_1:6064396-6064415 | Msa0532010:intron | 20.0% |
| !!! | AACATCATCATAAAACTTTT+TGG | + | chr4_1:6064540-6064559 | None:intergenic | 20.0% |
| ! | AATTGAAAGAGAAGAATGAT+CGG | + | chr4_1:6062449-6062468 | None:intergenic | 25.0% |
| ! | TCATTCTTCTCTTTCAATTA+TGG | - | chr4_1:6062450-6062469 | Msa0532010:three_prime_UTR | 25.0% |
| !! | CATTAGGTTTGCTTAAAAAA+TGG | + | chr4_1:6062691-6062710 | None:intergenic | 25.0% |
| ! | AATTAACCACTCAAAATCAT+AGG | - | chr4_1:6062737-6062756 | Msa0532010:three_prime_UTR | 25.0% |
| ! | TTGAAGTATACTTCAATCTA+GGG | + | chr4_1:6063227-6063246 | None:intergenic | 25.0% |
| !! | TTTGAAGTATACTTCAATCT+AGG | + | chr4_1:6063228-6063247 | None:intergenic | 25.0% |
| ! | AAAAATAAGGGAAACTTATG+TGG | - | chr4_1:6063245-6063264 | Msa0532010:CDS | 25.0% |
| ! | ACAAGCAGACATAATTTAAA+CGG | + | chr4_1:6063391-6063410 | None:intergenic | 25.0% |
| !! | TTATGTGTCTGTAATTTTAC+AGG | - | chr4_1:6063462-6063481 | Msa0532010:CDS | 25.0% |
| !!! | ATGAAAAAAATCCTGCTTTT+GGG | + | chr4_1:6063724-6063743 | None:intergenic | 25.0% |
| !! | TATGAAAAAAATCCTGCTTT+TGG | + | chr4_1:6063725-6063744 | None:intergenic | 25.0% |
| !! | AACATGATAGTTTCTTTTGA+AGG | - | chr4_1:6063810-6063829 | Msa0532010:intron | 25.0% |
| !! | TAAAAGTAACAAAGCATTAG+GGG | + | chr4_1:6064026-6064045 | None:intergenic | 25.0% |
| !! | CATAAAAGTAACAAAGCATT+AGG | + | chr4_1:6064028-6064047 | None:intergenic | 25.0% |
| !!! | AACTTCTAGTTTGTGTAATA+TGG | - | chr4_1:6064050-6064069 | Msa0532010:intron | 25.0% |
| ! | CAAATTCAACTTATAAGCAT+AGG | + | chr4_1:6064133-6064152 | None:intergenic | 25.0% |
| ! | TTGTGTGATCAAACAAAAAA+TGG | - | chr4_1:6064161-6064180 | Msa0532010:intron | 25.0% |
| ! | TGTGTGATCAAACAAAAAAT+GGG | - | chr4_1:6064162-6064181 | Msa0532010:intron | 25.0% |
| ! | GTTATGATATCCTATTCTAT+TGG | - | chr4_1:6064288-6064307 | Msa0532010:intron | 25.0% |
| ! | TAGTAATCAACCAATAGAAT+AGG | + | chr4_1:6064301-6064320 | None:intergenic | 25.0% |
| ! | ATCAAAAGCAAAAGAATTGA+TGG | + | chr4_1:6064389-6064408 | None:intergenic | 25.0% |
| ! | TTCATGGTCTATTGTAATAT+AGG | - | chr4_1:6064593-6064612 | Msa0532010:intron | 25.0% |
| ! | TAAAAGAGTTGTATGGTTAT+TGG | + | chr4_1:6064773-6064792 | None:intergenic | 25.0% |
| !! | TGTTTGCTTTGCTTTGAAAT+GGG | + | chr4_1:6062367-6062386 | None:intergenic | 30.0% |
| !! | ATGTTTGCTTTGCTTTGAAA+TGG | + | chr4_1:6062368-6062387 | None:intergenic | 30.0% |
| TCAGCATTTAAGAAAGATGA+AGG | + | chr4_1:6062488-6062507 | None:intergenic | 30.0% | |
| ! | TTTTCGTAATTCCATCATTC+AGG | - | chr4_1:6062760-6062779 | Msa0532010:three_prime_UTR | 30.0% |
| CATAATATTGACCTGAATGA+TGG | + | chr4_1:6062774-6062793 | None:intergenic | 30.0% | |
| AAAACTTATGGATCTGTCAT+CGG | - | chr4_1:6063125-6063144 | Msa0532010:three_prime_UTR | 30.0% | |
| TGAAGTATACTTCAATCTAG+GGG | + | chr4_1:6063226-6063245 | None:intergenic | 30.0% | |
| !! | TGAAAACCTCACTATTTTGA+AGG | - | chr4_1:6063279-6063298 | Msa0532010:CDS | 30.0% |
| !! | GAAAACCTCACTATTTTGAA+GGG | - | chr4_1:6063280-6063299 | Msa0532010:CDS | 30.0% |
| !! | AAAACCTCACTATTTTGAAG+GGG | - | chr4_1:6063281-6063300 | Msa0532010:CDS | 30.0% |
| AGAGAAAACACGATAAAACT+TGG | + | chr4_1:6063326-6063345 | None:intergenic | 30.0% | |
| CAGTTTCAATCGAACTATTT+GGG | - | chr4_1:6063432-6063451 | Msa0532010:CDS | 30.0% | |
| ! | TGTAATTTTACAGGCAAATG+CGG | - | chr4_1:6063471-6063490 | Msa0532010:CDS | 30.0% |
| GTTCATCATTTACAAGATTG+AGG | - | chr4_1:6063564-6063583 | Msa0532010:CDS | 30.0% | |
| CATAATCAAAAACAGCATAG+CGG | + | chr4_1:6063678-6063697 | None:intergenic | 30.0% | |
| GATTATGAGTTTATGACTGA+AGG | - | chr4_1:6063691-6063710 | Msa0532010:intron | 30.0% | |
| ! | AAAAGTAACAAAGCATTAGG+GGG | + | chr4_1:6064025-6064044 | None:intergenic | 30.0% |
| GTGTGATCAAACAAAAAATG+GGG | - | chr4_1:6064163-6064182 | Msa0532010:intron | 30.0% | |
| ! | TATCCTTTTTCTGTATGGAT+AGG | - | chr4_1:6064213-6064232 | Msa0532010:intron | 30.0% |
| TATCCTATCCATACAGAAAA+AGG | + | chr4_1:6064219-6064238 | None:intergenic | 30.0% | |
| ! | TTTTTCTGTATGGATAGGAT+AGG | - | chr4_1:6064218-6064237 | Msa0532010:intron | 30.0% |
| AAATGTTGTAAGTAACAGGT+GGG | + | chr4_1:6064253-6064272 | None:intergenic | 30.0% | |
| TAAATGTTGTAAGTAACAGG+TGG | + | chr4_1:6064254-6064273 | None:intergenic | 30.0% | |
| !! | GAAAATTGCTTTTAGTTGTC+CGG | - | chr4_1:6064418-6064437 | Msa0532010:intron | 30.0% |
| !! | AAAATTGCTTTTAGTTGTCC+GGG | - | chr4_1:6064419-6064438 | Msa0532010:intron | 30.0% |
| ATGGTCTATTGTAATATAGG+CGG | - | chr4_1:6064596-6064615 | Msa0532010:intron | 30.0% | |
| GCATATCATAAAGCTAAGTT+TGG | + | chr4_1:6064629-6064648 | None:intergenic | 30.0% | |
| ! | GAGATTCTAAAAGAGTTGTA+TGG | + | chr4_1:6064780-6064799 | None:intergenic | 30.0% |
| TAGAATCTCAAATTACTCCT+AGG | - | chr4_1:6064791-6064810 | Msa0532010:five_prime_UTR | 30.0% | |
| AGAATCTCAAATTACTCCTA+GGG | - | chr4_1:6064792-6064811 | Msa0532010:five_prime_UTR | 30.0% | |
| ! | CGAAAACCTATGATTTTGAG+TGG | + | chr4_1:6062746-6062765 | None:intergenic | 35.0% |
| GCTTATTTGAACTAATCCAG+CGG | + | chr4_1:6062929-6062948 | None:intergenic | 35.0% | |
| ! | AAACCTAATTAGGGCTTGTT+TGG | - | chr4_1:6063005-6063024 | Msa0532010:three_prime_UTR | 35.0% |
| AATCCAAACAAGCCCTAATT+AGG | + | chr4_1:6063011-6063030 | None:intergenic | 35.0% | |
| CCAAATAGTTCGATTGAAAC+TGG | + | chr4_1:6063434-6063453 | None:intergenic | 35.0% | |
| CCAGTTTCAATCGAACTATT+TGG | - | chr4_1:6063431-6063450 | Msa0532010:CDS | 35.0% | |
| GAAACAGAAACAAGTCATTG+TGG | - | chr4_1:6063588-6063607 | Msa0532010:CDS | 35.0% | |
| AAATTGTTCGTAACCTTCGA+CGG | + | chr4_1:6063629-6063648 | None:intergenic | 35.0% | |
| !!! | GCAGGATTTTTTTCATAGCA+TGG | - | chr4_1:6063728-6063747 | Msa0532010:intron | 35.0% |
| CTCTCTCTTGAATCTATCTT+TGG | + | chr4_1:6063882-6063901 | None:intergenic | 35.0% | |
| ACTGTTGGAGATCATTTAGT+TGG | + | chr4_1:6063978-6063997 | None:intergenic | 35.0% | |
| AACTAAATGATCTCCAACAG+TGG | - | chr4_1:6063977-6063996 | Msa0532010:intron | 35.0% | |
| TATGCCTCATTTATGTTGAG+TGG | - | chr4_1:6064098-6064117 | Msa0532010:intron | 35.0% | |
| AATGCCACTCAACATAAATG+AGG | + | chr4_1:6064105-6064124 | None:intergenic | 35.0% | |
| !!! | TAGCCTTTTTGAAGTGAAAC+AGG | + | chr4_1:6064190-6064209 | None:intergenic | 35.0% |
| !! | AAATTGCTTTTAGTTGTCCG+GGG | - | chr4_1:6064420-6064439 | Msa0532010:intron | 35.0% |
| AAAGGAGTTGAACGAGTTAA+AGG | - | chr4_1:6064475-6064494 | Msa0532010:intron | 35.0% | |
| AGTTAAAGGACTTCAAACTC+TGG | - | chr4_1:6064489-6064508 | Msa0532010:intron | 35.0% | |
| ! | TATGCTCCTTTTTACGAAGA+AGG | - | chr4_1:6064644-6064663 | Msa0532010:intron | 35.0% |
| ! | TCCTTTTTACGAAGAAGGAA+AGG | - | chr4_1:6064649-6064668 | Msa0532010:intron | 35.0% |
| ACCTTTCCTTCTTCGTAAAA+AGG | + | chr4_1:6064653-6064672 | None:intergenic | 35.0% | |
| TTCATAGGCTCAAATCTAGA+TGG | + | chr4_1:6064720-6064739 | None:intergenic | 35.0% | |
| CTTGATCTGTAAAGGTTCAT+AGG | + | chr4_1:6064735-6064754 | None:intergenic | 35.0% | |
| CTATGAACCTTTACAGATCA+AGG | - | chr4_1:6064733-6064752 | Msa0532010:five_prime_UTR | 35.0% | |
| GAACAATCCTTGATCTGTAA+AGG | + | chr4_1:6064743-6064762 | None:intergenic | 35.0% | |
| TGAAAGAGAAGAATGATCGG+TGG | + | chr4_1:6062446-6062465 | None:intergenic | 40.0% | |
| GAGATCAAAATCAGATCTGC+AGG | + | chr4_1:6062584-6062603 | None:intergenic | 40.0% | |
| TTCTCCCCTTCAAAATAGTG+AGG | + | chr4_1:6063288-6063307 | None:intergenic | 40.0% | |
| ! | TGACTGCAAGTTGAGGTTTA+TGG | - | chr4_1:6063516-6063535 | Msa0532010:CDS | 40.0% |
| AATTGTTCGTAACCTTCGAC+GGG | + | chr4_1:6063628-6063647 | None:intergenic | 40.0% | |
| !! | AGCATGGTGATGTTCTGTTT+TGG | - | chr4_1:6063744-6063763 | Msa0532010:intron | 40.0% |
| AGATTCAAGAGAGAGCTTGA+TGG | - | chr4_1:6063887-6063906 | Msa0532010:intron | 40.0% | |
| ACATCAAGACCAATCTCAGT+AGG | + | chr4_1:6063941-6063960 | None:intergenic | 40.0% | |
| TGGAGATCATTTAGTTGGCA+CGG | + | chr4_1:6063973-6063992 | None:intergenic | 40.0% | |
| GGTCCTGTTTCACTTCAAAA+AGG | - | chr4_1:6064184-6064203 | Msa0532010:intron | 40.0% | |
| ! | GATGATGTTTTCCGAGTTCA+AGG | - | chr4_1:6064551-6064570 | Msa0532010:intron | 40.0% |
| ! | CTCATGGTCTTGAGATTTCA+TGG | - | chr4_1:6064577-6064596 | Msa0532010:intron | 40.0% |
| TAGGCTCAAATCTAGATGGA+AGG | + | chr4_1:6064716-6064735 | None:intergenic | 40.0% | |
| AGAAGAATGATCGGTGGAAG+CGG | + | chr4_1:6062440-6062459 | None:intergenic | 45.0% | |
| TTGAACTAATCCAGCGGCAA+AGG | + | chr4_1:6062923-6062942 | None:intergenic | 45.0% | |
| TCCATGATGACTGCAAGTTG+AGG | - | chr4_1:6063509-6063528 | Msa0532010:CDS | 45.0% | |
| ACCTCAACTTGCAGTCATCA+TGG | + | chr4_1:6063513-6063532 | None:intergenic | 45.0% | |
| GTTGAGGTTTATGGAGCTCA+AGG | - | chr4_1:6063525-6063544 | Msa0532010:CDS | 45.0% | |
| TTATGGAGCTCAAGGCGAAA+AGG | - | chr4_1:6063533-6063552 | Msa0532010:CDS | 45.0% | |
| CAAGTCATTGTGGAGAAGCT+TGG | - | chr4_1:6063598-6063617 | Msa0532010:CDS | 45.0% | |
| AAGGCAATGTTCCCAAAAGC+AGG | - | chr4_1:6063710-6063729 | Msa0532010:intron | 45.0% | |
| GCCAGTTACTGTTGTAGCAT+CGG | - | chr4_1:6063770-6063789 | Msa0532010:intron | 45.0% | |
| ACCGATGCTACAACAGTAAC+TGG | + | chr4_1:6063774-6063793 | None:intergenic | 45.0% | |
| AAGGTCTCCTGACACATCAA+GGG | - | chr4_1:6063829-6063848 | Msa0532010:intron | 45.0% | |
| CTTCTAACCCTTGATGTGTC+AGG | + | chr4_1:6063839-6063858 | None:intergenic | 45.0% | |
| GCAACTGATCCTACTGAGAT+TGG | - | chr4_1:6063929-6063948 | Msa0532010:intron | 45.0% | |
| ! | AGCTCAATTGGTCTCAGCTA+AGG | - | chr4_1:6064449-6064468 | Msa0532010:intron | 45.0% |
| ! | GCTCAATTGGTCTCAGCTAA+GGG | - | chr4_1:6064450-6064469 | Msa0532010:intron | 45.0% |
| TGGTCTCAGCTAAGGGTTAA+AGG | - | chr4_1:6064457-6064476 | Msa0532010:intron | 45.0% | |
| ACCATGAGTGTCCTTGAACT+CGG | + | chr4_1:6064565-6064584 | None:intergenic | 45.0% | |
| TCAAACAGTTCCTTTGCCGC+TGG | - | chr4_1:6062910-6062929 | Msa0532010:three_prime_UTR | 50.0% | |
| TTACAGGCAAATGCGGCATC+CGG | - | chr4_1:6063478-6063497 | Msa0532010:CDS | 50.0% | |
| TCAAGGCGAAAAGGACACAC+AGG | - | chr4_1:6063542-6063561 | Msa0532010:CDS | 50.0% | |
| GAAGGTCTCCTGACACATCA+AGG | - | chr4_1:6063828-6063847 | Msa0532010:intron | 50.0% | |
| GCAGAAAAGGAAGCCACTGT+TGG | + | chr4_1:6063993-6064012 | None:intergenic | 50.0% | |
| ! | ACAGTGGCTTCCTTTTCTGC+TGG | - | chr4_1:6063993-6064012 | Msa0532010:intron | 50.0% |
| ! | CAGTGGCTTCCTTTTCTGCT+GGG | - | chr4_1:6063994-6064013 | Msa0532010:intron | 50.0% |
| ! | AGTGGCTTCCTTTTCTGCTG+GGG | - | chr4_1:6063995-6064014 | Msa0532010:intron | 50.0% |
| !! | TGCTTTTAGTTGTCCGGGGT+TGG | - | chr4_1:6064424-6064443 | Msa0532010:intron | 50.0% |
| !! | GCTTTTAGTTGTCCGGGGTT+GGG | - | chr4_1:6064425-6064444 | Msa0532010:intron | 50.0% |
| TCCGAGTTCAAGGACACTCA+TGG | - | chr4_1:6064561-6064580 | Msa0532010:intron | 50.0% | |
| AGAATGATCGGTGGAAGCGG+AGG | + | chr4_1:6062437-6062456 | None:intergenic | 55.0% | |
| AAATGCGGCATCCGGTATGG+CGG | - | chr4_1:6063486-6063505 | Msa0532010:CDS | 55.0% | |
| GTCATCATGGACCGCCATAC+CGG | + | chr4_1:6063500-6063519 | None:intergenic | 55.0% | |
| CCAATTGAGCTACCCAACCC+CGG | + | chr4_1:6064440-6064459 | None:intergenic | 55.0% | |
| GGAAGCGGAGGAGAAGGAGA+AGG | + | chr4_1:6062425-6062444 | None:intergenic | 60.0% | |
| ATCGGTGGAAGCGGAGGAGA+AGG | + | chr4_1:6062431-6062450 | None:intergenic | 60.0% | |
| GGCAAATGCGGCATCCGGTA+TGG | - | chr4_1:6063483-6063502 | Msa0532010:CDS | 60.0% | |
| GCACTCATCAGCAGGAAGGC+AGG | + | chr4_1:6063656-6063675 | None:intergenic | 60.0% | |
| AGCGGCACTCATCAGCAGGA+AGG | + | chr4_1:6063660-6063679 | None:intergenic | 60.0% | |
| GCATAGCGGCACTCATCAGC+AGG | + | chr4_1:6063664-6063683 | None:intergenic | 60.0% | |
| CCGGGGTTGGGTAGCTCAAT+TGG | - | chr4_1:6064437-6064456 | Msa0532010:intron | 60.0% | |
| AAGCTTGGCGAGCCCGTCGA+AGG | - | chr4_1:6063613-6063632 | Msa0532010:CDS | 65.0% | |
| GGGGCTCACCCCAGCAGAAA+AGG | + | chr4_1:6064006-6064025 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 6062331 | 6064821 | 6062331 | ID=Msa0532010;Name=Msa0532010 |
| chr4_1 | mRNA | 6062331 | 6064821 | 6062331 | ID=Msa0532010-mRNA-1;Parent=Msa0532010;Name=Msa0532010-mRNA-1;_AED=0.01;_eAED=0.01;_QI=138|1|1|1|1|1|3|839|139 |
| chr4_1 | exon | 6062331 | 6063320 | 6062331 | ID=Msa0532010-mRNA-1:exon:2055;Parent=Msa0532010-mRNA-1 |
| chr4_1 | exon | 6063403 | 6063668 | 6063403 | ID=Msa0532010-mRNA-1:exon:2054;Parent=Msa0532010-mRNA-1 |
| chr4_1 | exon | 6064681 | 6064821 | 6064681 | ID=Msa0532010-mRNA-1:exon:2053;Parent=Msa0532010-mRNA-1 |
| chr4_1 | five_prime_UTR | 6064684 | 6064821 | 6064684 | ID=Msa0532010-mRNA-1:five_prime_utr;Parent=Msa0532010-mRNA-1 |
| chr4_1 | CDS | 6064681 | 6064683 | 6064681 | ID=Msa0532010-mRNA-1:cds;Parent=Msa0532010-mRNA-1 |
| chr4_1 | CDS | 6063403 | 6063668 | 6063403 | ID=Msa0532010-mRNA-1:cds;Parent=Msa0532010-mRNA-1 |
| chr4_1 | CDS | 6063170 | 6063320 | 6063170 | ID=Msa0532010-mRNA-1:cds;Parent=Msa0532010-mRNA-1 |
| chr4_1 | three_prime_UTR | 6062331 | 6063169 | 6062331 | ID=Msa0532010-mRNA-1:three_prime_utr;Parent=Msa0532010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
