Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701860 | XP_003629907.1 | 97.842 | 139 | 3 | 0 | 1 | 139 | 1 | 139 | 2.70e-97 | 286 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701860 | sp|Q9FVI1|ADF2_PETHY | 84.173 | 139 | 22 | 0 | 1 | 139 | 1 | 139 | 9.76e-86 | 249 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701860 | G7L826 | 97.842 | 139 | 3 | 0 | 1 | 139 | 1 | 139 | 1.29e-97 | 286 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa0701860 | 0.810422 | 1.162144e-50 | -8.615850e-47 |
| Msa0029540 | Msa0701860 | 0.814554 | 1.452388e-51 | -8.615850e-47 |
| Msa0120020 | Msa0701860 | 0.800537 | 1.375609e-48 | -8.615850e-47 |
| Msa0701860 | Msa0930910 | 0.815613 | 8.451504e-52 | -8.615850e-47 |
| Msa0701860 | Msa1130210 | 0.806671 | 7.345920e-50 | -8.615850e-47 |
| Msa0701860 | Msa1217860 | -0.800600 | 1.335541e-48 | -8.615850e-47 |
| Msa0701860 | Msa1410760 | 0.821409 | 4.100253e-53 | -8.615850e-47 |
| Msa0701860 | Msa1439960 | -0.807763 | 4.312506e-50 | -8.615850e-47 |
| Msa0138970 | Msa0701860 | 0.813692 | 2.250218e-51 | -8.615850e-47 |
| Msa0143240 | Msa0701860 | 0.801987 | 6.946978e-49 | -8.615850e-47 |
| Msa0294560 | Msa0701860 | 0.801005 | 1.104405e-48 | -8.615850e-47 |
| Msa0532010 | Msa0701860 | 0.992405 | 4.273868e-193 | -8.615850e-47 |
| Msa0532120 | Msa0701860 | 0.982476 | 3.439209e-155 | -8.615850e-47 |
| Msa0574760 | Msa0701860 | 0.810978 | 8.808165e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701860 | MtrunA17_Chr8g0380291 | 97.842 | 139 | 3 | 0 | 1 | 139 | 1 | 139 | 2.48e-101 | 286 |
| Msa0701860 | MtrunA17_Chr2g0291571 | 88.489 | 139 | 16 | 0 | 1 | 139 | 1 | 139 | 6.14e-94 | 267 |
| Msa0701860 | MtrunA17_Chr1g0182501 | 79.137 | 139 | 29 | 0 | 1 | 139 | 1 | 139 | 2.54e-82 | 238 |
| Msa0701860 | MtrunA17_Chr8g0386651 | 72.464 | 138 | 36 | 1 | 1 | 138 | 1 | 136 | 4.14e-75 | 219 |
| Msa0701860 | MtrunA17_Chr1g0203211 | 69.565 | 138 | 40 | 1 | 1 | 138 | 25 | 160 | 1.12e-70 | 209 |
| Msa0701860 | MtrunA17_Chr5g0397641 | 68.841 | 138 | 41 | 1 | 1 | 138 | 1 | 136 | 3.18e-70 | 207 |
| Msa0701860 | MtrunA17_Chr7g0261251 | 59.124 | 137 | 56 | 0 | 3 | 139 | 10 | 146 | 1.59e-62 | 188 |
| Msa0701860 | MtrunA17_Chr4g0037251 | 58.519 | 135 | 56 | 0 | 4 | 138 | 8 | 142 | 1.38e-57 | 175 |
| Msa0701860 | MtrunA17_Chr1g0187771 | 56.522 | 138 | 60 | 0 | 2 | 139 | 10 | 147 | 3.75e-50 | 157 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701860 | AT3G46010.1 | 80.576 | 139 | 27 | 0 | 1 | 139 | 1 | 139 | 1.04e-86 | 249 |
| Msa0701860 | AT3G46010.2 | 80.435 | 138 | 27 | 0 | 2 | 139 | 13 | 150 | 6.36e-86 | 248 |
| Msa0701860 | AT5G59880.1 | 82.014 | 139 | 25 | 0 | 1 | 139 | 1 | 139 | 1.44e-85 | 246 |
| Msa0701860 | AT5G59890.1 | 80.576 | 139 | 27 | 0 | 1 | 139 | 1 | 139 | 4.51e-84 | 243 |
| Msa0701860 | AT3G46000.1 | 77.698 | 139 | 29 | 1 | 1 | 139 | 1 | 137 | 5.96e-79 | 229 |
| Msa0701860 | AT5G59890.3 | 79.545 | 132 | 27 | 0 | 8 | 139 | 1 | 132 | 1.67e-78 | 228 |
| Msa0701860 | AT5G59890.2 | 79.545 | 132 | 27 | 0 | 8 | 139 | 1 | 132 | 1.67e-78 | 228 |
| Msa0701860 | AT3G46000.2 | 76.978 | 139 | 30 | 1 | 1 | 139 | 20 | 156 | 5.26e-78 | 228 |
| Msa0701860 | AT3G46000.3 | 76.515 | 132 | 29 | 1 | 8 | 139 | 1 | 130 | 2.23e-73 | 215 |
| Msa0701860 | AT1G01750.1 | 69.784 | 139 | 42 | 0 | 1 | 139 | 1 | 139 | 3.69e-73 | 215 |
| Msa0701860 | AT4G00680.1 | 68.345 | 139 | 44 | 0 | 1 | 139 | 1 | 139 | 7.77e-73 | 214 |
| Msa0701860 | AT1G01750.2 | 69.565 | 138 | 42 | 0 | 2 | 139 | 7 | 144 | 2.96e-72 | 213 |
| Msa0701860 | AT4G00680.2 | 68.116 | 138 | 44 | 0 | 2 | 139 | 12 | 149 | 7.77e-72 | 212 |
| Msa0701860 | AT4G25590.1 | 70.290 | 138 | 39 | 1 | 1 | 138 | 1 | 136 | 2.65e-71 | 210 |
| Msa0701860 | AT5G52360.1 | 69.565 | 138 | 40 | 1 | 1 | 138 | 1 | 136 | 1.83e-70 | 208 |
| Msa0701860 | AT5G59880.2 | 71.223 | 139 | 25 | 1 | 1 | 139 | 1 | 124 | 2.36e-70 | 207 |
| Msa0701860 | AT4G25590.2 | 68.702 | 131 | 39 | 1 | 8 | 138 | 1 | 129 | 8.03e-66 | 196 |
| Msa0701860 | AT2G31200.1 | 54.745 | 137 | 62 | 0 | 3 | 139 | 10 | 146 | 2.44e-57 | 175 |
| Msa0701860 | AT4G34970.1 | 53.237 | 139 | 65 | 0 | 1 | 139 | 3 | 141 | 6.82e-55 | 169 |
| Msa0701860 | AT2G16700.1 | 53.333 | 135 | 63 | 0 | 4 | 138 | 8 | 142 | 6.45e-53 | 164 |
| Msa0701860 | AT2G16700.4 | 53.435 | 131 | 61 | 0 | 8 | 138 | 1 | 131 | 6.64e-51 | 158 |
| Msa0701860 | AT2G16700.2 | 53.435 | 131 | 61 | 0 | 8 | 138 | 1 | 131 | 6.64e-51 | 158 |
| Msa0701860 | AT3G45990.1 | 58.993 | 139 | 44 | 4 | 8 | 139 | 1 | 133 | 1.21e-49 | 155 |
| Msa0701860 | AT2G16700.3 | 51.724 | 87 | 42 | 0 | 4 | 90 | 8 | 94 | 1.81e-29 | 103 |
Find 82 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTTTCCTTCTTCGTAAAA+AGG | 0.195650 | 4_4:+73304021 | None:intergenic |
| AACTTCTAGTTTGTGTAATA+TGG | 0.207836 | 4_4:-73304621 | Msa0701860:three_prime_UTR |
| CATAAAAGTAACAAAGCATT+AGG | 0.216031 | 4_4:+73304646 | None:intergenic |
| TATCCTATCCATACAGAAAA+AGG | 0.261065 | 4_4:+73304455 | None:intergenic |
| TGACTGCAAGTTGAGGTTTA+TGG | 0.271763 | 4_4:-73305155 | Msa0701860:CDS |
| TGGTCTCAGCTAAGGGTTAA+AGG | 0.280838 | 4_4:-73304214 | Msa0701860:three_prime_UTR |
| CTCTCTCTTGAATCTATCTT+TGG | 0.282496 | 4_4:+73304792 | None:intergenic |
| TAAAAGAGTTGTATGGTTAT+TGG | 0.283322 | 4_4:+73303901 | None:intergenic |
| TCATTCTTCTCTTTCAATTA+TGG | 0.283630 | 4_4:-73306213 | Msa0701860:intron |
| AAAGGAGTTGAACGAGTTAA+AGG | 0.292541 | 4_4:-73304196 | Msa0701860:three_prime_UTR |
| CTCATGGTCTTGAGATTTCA+TGG | 0.315642 | 4_4:-73304094 | Msa0701860:three_prime_UTR |
| ATAAAAGTAACAAAGCATTA+GGG | 0.332932 | 4_4:+73304647 | None:intergenic |
| GGTCCTGTTTCACTTCAAAA+AGG | 0.352344 | 4_4:-73304487 | Msa0701860:three_prime_UTR |
| ATCAAAAGCAAAAGAATTGA+TGG | 0.352947 | 4_4:+73304285 | None:intergenic |
| AAATAAATGTTGTAAGTAAC+AGG | 0.355779 | 4_4:+73304417 | None:intergenic |
| ATGTTTGCTTTGCTTTGAAA+TGG | 0.368776 | 4_4:+73306298 | None:intergenic |
| CCGGGGTTGGGTAGCTCAAT+TGG | 0.369158 | 4_4:-73304234 | Msa0701860:three_prime_UTR |
| CTTGATCTGTAAAGGTTCAT+AGG | 0.388998 | 4_4:+73303939 | None:intergenic |
| TAGAATCTCAAATTACTCCT+AGG | 0.400479 | 4_4:-73303880 | Msa0701860:three_prime_UTR |
| TTCATGGTCTATTGTAATAT+AGG | 0.400965 | 4_4:-73304078 | Msa0701860:three_prime_UTR |
| GCATATCATAAAGCTAAGTT+TGG | 0.410663 | 4_4:+73304045 | None:intergenic |
| CTATGAACCTTTACAGATCA+AGG | 0.411073 | 4_4:-73303938 | Msa0701860:three_prime_UTR |
| GTTATGATATCCTATTCTAT+TGG | 0.419322 | 4_4:-73304383 | Msa0701860:three_prime_UTR |
| CTTCTAACCCTTGATGTGTC+AGG | 0.419707 | 4_4:+73304835 | None:intergenic |
| GAGATTCTAAAAGAGTTGTA+TGG | 0.434022 | 4_4:+73303894 | None:intergenic |
| TTCATAGGCTCAAATCTAGA+TGG | 0.444253 | 4_4:+73303954 | None:intergenic |
| GTTCATCATTTACAAGATTG+AGG | 0.446804 | 4_4:-73305107 | Msa0701860:CDS |
| AGCTCAATTGGTCTCAGCTA+AGG | 0.448050 | 4_4:-73304222 | Msa0701860:three_prime_UTR |
| TGTTTGCTTTGCTTTGAAAT+GGG | 0.449419 | 4_4:+73306299 | None:intergenic |
| GGGGCTCACCCCAGCAGAAA+AGG | 0.456032 | 4_4:+73304668 | None:intergenic |
| GAACAATCCTTGATCTGTAA+AGG | 0.457213 | 4_4:+73303931 | None:intergenic |
| GCACTCATCAGCAGGAAGGC+AGG | 0.460234 | 4_4:+73305018 | None:intergenic |
| GCAACTGATCCTACTGAGAT+TGG | 0.468027 | 4_4:-73304742 | Msa0701860:CDS |
| ACTGTTGGAGATCATTTAGT+TGG | 0.469715 | 4_4:+73304696 | None:intergenic |
| TAGTAATCAACCAATAGAAT+AGG | 0.470521 | 4_4:+73304373 | None:intergenic |
| GAAGGTCTCCTGACACATCA+AGG | 0.471655 | 4_4:-73304843 | Msa0701860:intron |
| TTACAGGCAAATGCGGCATC+CGG | 0.477481 | 4_4:-73305193 | Msa0701860:intron |
| ATCGGTGGAAGCGGAGGAGA+AGG | 0.496225 | 4_4:+73306235 | None:intergenic |
| GTCATCATGGACCGCCATAC+CGG | 0.500234 | 4_4:+73305174 | None:intergenic |
| ACCTCAACTTGCAGTCATCA+TGG | 0.504088 | 4_4:+73305161 | None:intergenic |
| TATGCCTCATTTATGTTGAG+TGG | 0.510069 | 4_4:-73304573 | Msa0701860:three_prime_UTR |
| AGATTCAAGAGAGAGCTTGA+TGG | 0.510719 | 4_4:-73304784 | Msa0701860:CDS |
| GCATAGCGGCACTCATCAGC+AGG | 0.511636 | 4_4:+73305010 | None:intergenic |
| GGCAAATGCGGCATCCGGTA+TGG | 0.514841 | 4_4:-73305188 | Msa0701860:CDS |
| CAAGTCATTGTGGAGAAGCT+TGG | 0.515016 | 4_4:-73305073 | Msa0701860:CDS |
| AGAATCTCAAATTACTCCTA+GGG | 0.515581 | 4_4:-73303879 | Msa0701860:three_prime_UTR |
| TAAAAGTAACAAAGCATTAG+GGG | 0.517509 | 4_4:+73304648 | None:intergenic |
| AAGGCAATGTTCCCAAAAGC+AGG | 0.520698 | 4_4:-73304961 | Msa0701860:CDS |
| AGAAGAATGATCGGTGGAAG+CGG | 0.534770 | 4_4:+73306226 | None:intergenic |
| TTATGGAGCTCAAGGCGAAA+AGG | 0.536997 | 4_4:-73305138 | Msa0701860:CDS |
| ACCATGAGTGTCCTTGAACT+CGG | 0.542503 | 4_4:+73304109 | None:intergenic |
| GATTATGAGTTTATGACTGA+AGG | 0.546901 | 4_4:-73304980 | Msa0701860:CDS |
| CAAATTCAACTTATAAGCAT+AGG | 0.548192 | 4_4:+73304541 | None:intergenic |
| TCCGAGTTCAAGGACACTCA+TGG | 0.553300 | 4_4:-73304110 | Msa0701860:three_prime_UTR |
| GTTGAGGTTTATGGAGCTCA+AGG | 0.554455 | 4_4:-73305146 | Msa0701860:CDS |
| AATTGTTCGTAACCTTCGAC+GGG | 0.561631 | 4_4:+73305046 | None:intergenic |
| AAATTGTTCGTAACCTTCGA+CGG | 0.562726 | 4_4:+73305045 | None:intergenic |
| GCAGAAAAGGAAGCCACTGT+TGG | 0.569013 | 4_4:+73304681 | None:intergenic |
| GCTCAATTGGTCTCAGCTAA+GGG | 0.577442 | 4_4:-73304221 | Msa0701860:three_prime_UTR |
| TGGAGATCATTTAGTTGGCA+CGG | 0.583240 | 4_4:+73304701 | None:intergenic |
| TAAATGTTGTAAGTAACAGG+TGG | 0.583911 | 4_4:+73304420 | None:intergenic |
| TAGGCTCAAATCTAGATGGA+AGG | 0.586490 | 4_4:+73303958 | None:intergenic |
| AAGCTTGGCGAGCCCGTCGA+AGG | 0.586923 | 4_4:-73305058 | Msa0701860:CDS |
| GGAAGCGGAGGAGAAGGAGA+AGG | 0.589223 | 4_4:+73306241 | None:intergenic |
| TCCATGATGACTGCAAGTTG+AGG | 0.591374 | 4_4:-73305162 | Msa0701860:CDS |
| AATGCCACTCAACATAAATG+AGG | 0.596164 | 4_4:+73304569 | None:intergenic |
| AAGGTCTCCTGACACATCAA+GGG | 0.598732 | 4_4:-73304842 | Msa0701860:CDS |
| ATGGTCTATTGTAATATAGG+CGG | 0.606950 | 4_4:-73304075 | Msa0701860:three_prime_UTR |
| AGTTAAAGGACTTCAAACTC+TGG | 0.612443 | 4_4:-73304182 | Msa0701860:three_prime_UTR |
| TGTCTAGAAGAAACTTCCCT+AGG | 0.614779 | 4_4:+73303863 | None:intergenic |
| AATTGAAAGAGAAGAATGAT+CGG | 0.621391 | 4_4:+73306217 | None:intergenic |
| AGCGGCACTCATCAGCAGGA+AGG | 0.621421 | 4_4:+73305014 | None:intergenic |
| TGAAAGAGAAGAATGATCGG+TGG | 0.621821 | 4_4:+73306220 | None:intergenic |
| ACATCAAGACCAATCTCAGT+AGG | 0.622765 | 4_4:+73304733 | None:intergenic |
| AAATGTTGTAAGTAACAGGT+GGG | 0.622786 | 4_4:+73304421 | None:intergenic |
| AACTAAATGATCTCCAACAG+TGG | 0.628963 | 4_4:-73304694 | Msa0701860:exon |
| CCAATTGAGCTACCCAACCC+CGG | 0.631662 | 4_4:+73304234 | None:intergenic |
| AGAATGATCGGTGGAAGCGG+AGG | 0.632387 | 4_4:+73306229 | None:intergenic |
| GAAACAGAAACAAGTCATTG+TGG | 0.633781 | 4_4:-73305083 | Msa0701860:CDS |
| AAATGCGGCATCCGGTATGG+CGG | 0.649579 | 4_4:-73305185 | Msa0701860:CDS |
| AAAAGTAACAAAGCATTAGG+GGG | 0.653891 | 4_4:+73304649 | None:intergenic |
| TCAAGGCGAAAAGGACACAC+AGG | 0.692606 | 4_4:-73305129 | Msa0701860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGAATTAAATTTTATGTTG+TGG | + | chr4_4:73304383-73304402 | None:intergenic | 15.0% |
| !! | TAAATCTTAAAAACCTAATT+AGG | - | chr4_4:73304528-73304547 | Msa0701860:three_prime_UTR | 15.0% |
| !! | AAATCTTAAAAACCTAATTA+GGG | - | chr4_4:73304529-73304548 | Msa0701860:three_prime_UTR | 15.0% |
| !!! | ACTTATTTTTTTAGCTATTT+TGG | - | chr4_4:73304618-73304637 | Msa0701860:three_prime_UTR | 15.0% |
| !!! | CTTATTTTTTTAGCTATTTT+GGG | - | chr4_4:73304619-73304638 | Msa0701860:three_prime_UTR | 15.0% |
| !!! | TTATTTTTTTAGCTATTTTG+GGG | - | chr4_4:73304620-73304639 | Msa0701860:three_prime_UTR | 15.0% |
| !! | TACAATCATTTATTTATTTG+AGG | - | chr4_4:73304896-73304915 | Msa0701860:intron | 15.0% |
| !!! | ACAACATTTATTTTTTTGTT+TGG | - | chr4_4:73305797-73305816 | Msa0701860:intron | 15.0% |
| !! | AAATGATAAAGTAAACAGAA+CGG | + | chr4_4:73304098-73304117 | None:intergenic | 20.0% |
| !!! | ATTAGGTTTGCTTAAAAAAT+GGG | + | chr4_4:73304228-73304247 | None:intergenic | 20.0% |
| !! | ACAGTAATCAAATAATCATT+AGG | + | chr4_4:73304245-73304264 | None:intergenic | 20.0% |
| !! | TTTATGTTGTGGTATAAAAA+TGG | + | chr4_4:73304372-73304391 | None:intergenic | 20.0% |
| !! | TATATATGTTCTATTTGGAT+TGG | + | chr4_4:73304484-73304503 | None:intergenic | 20.0% |
| !! | TTGCATATATATGTTCTATT+TGG | + | chr4_4:73304489-73304508 | None:intergenic | 20.0% |
| !! | TAATAATTTAACTAAGCACT+TGG | - | chr4_4:73304563-73304582 | Msa0701860:three_prime_UTR | 20.0% |
| !!! | AATAAGTTGATCAAAACTTA+TGG | - | chr4_4:73304646-73304665 | Msa0701860:three_prime_UTR | 20.0% |
| !! | TGAAGTATACTTCAAAAATA+AGG | - | chr4_4:73304765-73304784 | Msa0701860:CDS | 20.0% |
| !! | GAAGTATACTTCAAAAATAA+GGG | - | chr4_4:73304766-73304785 | Msa0701860:CDS | 20.0% |
| !!! | ATAAAAGTAACAAAGCATTA+GGG | + | chr4_4:73305560-73305579 | None:intergenic | 20.0% |
| !!! | TAATATATCCTTTTTCTGTA+TGG | - | chr4_4:73305741-73305760 | Msa0701860:intron | 20.0% |
| !! | AAATAAATGTTGTAAGTAAC+AGG | + | chr4_4:73305790-73305809 | None:intergenic | 20.0% |
| !!! | TTTTGCTTTTGATTATATGA+TGG | - | chr4_4:73305929-73305948 | Msa0701860:intron | 20.0% |
| !!! | AACATCATCATAAAACTTTT+TGG | + | chr4_4:73306073-73306092 | None:intergenic | 20.0% |
| ! | AATTGAAAGAGAAGAATGAT+CGG | + | chr4_4:73303990-73304009 | None:intergenic | 25.0% |
| ! | TCATTCTTCTCTTTCAATTA+TGG | - | chr4_4:73303991-73304010 | Msa0701860:three_prime_UTR | 25.0% |
| !! | CATTAGGTTTGCTTAAAAAA+TGG | + | chr4_4:73304229-73304248 | None:intergenic | 25.0% |
| ! | AATTAACCACTCAAAATCAT+AGG | - | chr4_4:73304270-73304289 | Msa0701860:three_prime_UTR | 25.0% |
| ! | TTGAAGTATACTTCAATCTA+GGG | + | chr4_4:73304760-73304779 | None:intergenic | 25.0% |
| !! | TTTGAAGTATACTTCAATCT+AGG | + | chr4_4:73304761-73304780 | None:intergenic | 25.0% |
| ! | AAAAATAAGGGAAACTTATG+TGG | - | chr4_4:73304778-73304797 | Msa0701860:CDS | 25.0% |
| ! | ACAAGCAGACATAATTTAAA+CGG | + | chr4_4:73304924-73304943 | None:intergenic | 25.0% |
| !! | TTATGTGTCTGTAATTTTAC+AGG | - | chr4_4:73304995-73305014 | Msa0701860:CDS | 25.0% |
| !!! | ATGAAAAAAATCCTGCTTTT+GGG | + | chr4_4:73305257-73305276 | None:intergenic | 25.0% |
| !! | TATGAAAAAAATCCTGCTTT+TGG | + | chr4_4:73305258-73305277 | None:intergenic | 25.0% |
| !! | AACATGATAGTTTCTTTTGA+AGG | - | chr4_4:73305343-73305362 | Msa0701860:intron | 25.0% |
| !! | TAAAAGTAACAAAGCATTAG+GGG | + | chr4_4:73305559-73305578 | None:intergenic | 25.0% |
| !! | CATAAAAGTAACAAAGCATT+AGG | + | chr4_4:73305561-73305580 | None:intergenic | 25.0% |
| !!! | AACTTCTAGTTTGTGTAATA+TGG | - | chr4_4:73305583-73305602 | Msa0701860:intron | 25.0% |
| ! | CAAATTCAACTTATAAGCAT+AGG | + | chr4_4:73305666-73305685 | None:intergenic | 25.0% |
| ! | TTGTGTGATCAAACAAAAAA+TGG | - | chr4_4:73305694-73305713 | Msa0701860:intron | 25.0% |
| ! | TGTGTGATCAAACAAAAAAT+GGG | - | chr4_4:73305695-73305714 | Msa0701860:intron | 25.0% |
| ! | GTTATGATATCCTATTCTAT+TGG | - | chr4_4:73305821-73305840 | Msa0701860:intron | 25.0% |
| ! | TAGTAATCAACCAATAGAAT+AGG | + | chr4_4:73305834-73305853 | None:intergenic | 25.0% |
| ! | ATCAAAAGCAAAAGAATTGA+TGG | + | chr4_4:73305922-73305941 | None:intergenic | 25.0% |
| ! | TTCATGGTCTATTGTAATAT+AGG | - | chr4_4:73306126-73306145 | Msa0701860:intron | 25.0% |
| ! | TAAAAGAGTTGTATGGTTAT+TGG | + | chr4_4:73306306-73306325 | None:intergenic | 25.0% |
| !! | TGTTTGCTTTGCTTTGAAAT+GGG | + | chr4_4:73303908-73303927 | None:intergenic | 30.0% |
| !! | ATGTTTGCTTTGCTTTGAAA+TGG | + | chr4_4:73303909-73303928 | None:intergenic | 30.0% |
| GAATCAGCATTTAAGAAAGA+TGG | + | chr4_4:73304032-73304051 | None:intergenic | 30.0% | |
| ! | TTTTCGTAATTCCATCATTC+AGG | - | chr4_4:73304293-73304312 | Msa0701860:three_prime_UTR | 30.0% |
| CATAATATTGACCTGAATGA+TGG | + | chr4_4:73304307-73304326 | None:intergenic | 30.0% | |
| AAAACTTATGGATCTGTCAT+CGG | - | chr4_4:73304658-73304677 | Msa0701860:three_prime_UTR | 30.0% | |
| TGAAGTATACTTCAATCTAG+GGG | + | chr4_4:73304759-73304778 | None:intergenic | 30.0% | |
| !! | TGAAAACCTCACTATTTTGA+AGG | - | chr4_4:73304812-73304831 | Msa0701860:CDS | 30.0% |
| !! | GAAAACCTCACTATTTTGAA+GGG | - | chr4_4:73304813-73304832 | Msa0701860:CDS | 30.0% |
| !! | AAAACCTCACTATTTTGAAG+GGG | - | chr4_4:73304814-73304833 | Msa0701860:CDS | 30.0% |
| AGAGAAAACACGATAAAACT+TGG | + | chr4_4:73304859-73304878 | None:intergenic | 30.0% | |
| CAGTTTCAATCGAACTATTT+GGG | - | chr4_4:73304965-73304984 | Msa0701860:CDS | 30.0% | |
| ! | TGTAATTTTACAGGCAAATG+CGG | - | chr4_4:73305004-73305023 | Msa0701860:CDS | 30.0% |
| GTTCATCATTTACAAGATTG+AGG | - | chr4_4:73305097-73305116 | Msa0701860:CDS | 30.0% | |
| CATAATCAAAAACAGCATAG+CGG | + | chr4_4:73305211-73305230 | None:intergenic | 30.0% | |
| GATTATGAGTTTATGACTGA+AGG | - | chr4_4:73305224-73305243 | Msa0701860:intron | 30.0% | |
| ! | AAAAGTAACAAAGCATTAGG+GGG | + | chr4_4:73305558-73305577 | None:intergenic | 30.0% |
| GTGTGATCAAACAAAAAATG+GGG | - | chr4_4:73305696-73305715 | Msa0701860:intron | 30.0% | |
| ! | TATCCTTTTTCTGTATGGAT+AGG | - | chr4_4:73305746-73305765 | Msa0701860:intron | 30.0% |
| TATCCTATCCATACAGAAAA+AGG | + | chr4_4:73305752-73305771 | None:intergenic | 30.0% | |
| ! | TTTTTCTGTATGGATAGGAT+AGG | - | chr4_4:73305751-73305770 | Msa0701860:intron | 30.0% |
| AAATGTTGTAAGTAACAGGT+GGG | + | chr4_4:73305786-73305805 | None:intergenic | 30.0% | |
| TAAATGTTGTAAGTAACAGG+TGG | + | chr4_4:73305787-73305806 | None:intergenic | 30.0% | |
| !! | GAAAATTGCTTTTAGTTGTC+CGG | - | chr4_4:73305951-73305970 | Msa0701860:intron | 30.0% |
| !! | AAAATTGCTTTTAGTTGTCC+GGG | - | chr4_4:73305952-73305971 | Msa0701860:intron | 30.0% |
| ATGGTCTATTGTAATATAGG+CGG | - | chr4_4:73306129-73306148 | Msa0701860:intron | 30.0% | |
| GCATATCATAAAGCTAAGTT+TGG | + | chr4_4:73306162-73306181 | None:intergenic | 30.0% | |
| ! | GAGATTCTAAAAGAGTTGTA+TGG | + | chr4_4:73306313-73306332 | None:intergenic | 30.0% |
| TAGAATCTCAAATTACTCCT+AGG | - | chr4_4:73306324-73306343 | Msa0701860:five_prime_UTR | 30.0% | |
| AGAATCTCAAATTACTCCTA+GGG | - | chr4_4:73306325-73306344 | Msa0701860:five_prime_UTR | 30.0% | |
| TCAGCATTTAAGAAAGATGG+AGG | + | chr4_4:73304029-73304048 | None:intergenic | 35.0% | |
| ! | CGAAAACCTATGATTTTGAG+TGG | + | chr4_4:73304279-73304298 | None:intergenic | 35.0% |
| GCTTATTTGAACTAATCCAG+CGG | + | chr4_4:73304462-73304481 | None:intergenic | 35.0% | |
| ! | AAACCTAATTAGGGCTTGTT+TGG | - | chr4_4:73304538-73304557 | Msa0701860:three_prime_UTR | 35.0% |
| AATCCAAACAAGCCCTAATT+AGG | + | chr4_4:73304544-73304563 | None:intergenic | 35.0% | |
| CCAAATAGTTCGATTGAAAC+TGG | + | chr4_4:73304967-73304986 | None:intergenic | 35.0% | |
| CCAGTTTCAATCGAACTATT+TGG | - | chr4_4:73304964-73304983 | Msa0701860:CDS | 35.0% | |
| GAAACAGAAACAAGTCATTG+TGG | - | chr4_4:73305121-73305140 | Msa0701860:CDS | 35.0% | |
| AAATTGTTCGTAACCTTCGA+CGG | + | chr4_4:73305162-73305181 | None:intergenic | 35.0% | |
| !!! | GCAGGATTTTTTTCATAGCA+TGG | - | chr4_4:73305261-73305280 | Msa0701860:intron | 35.0% |
| CTCTCTCTTGAATCTATCTT+TGG | + | chr4_4:73305415-73305434 | None:intergenic | 35.0% | |
| ACTGTTGGAGATCATTTAGT+TGG | + | chr4_4:73305511-73305530 | None:intergenic | 35.0% | |
| AACTAAATGATCTCCAACAG+TGG | - | chr4_4:73305510-73305529 | Msa0701860:intron | 35.0% | |
| TATGCCTCATTTATGTTGAG+TGG | - | chr4_4:73305631-73305650 | Msa0701860:intron | 35.0% | |
| AATGCCACTCAACATAAATG+AGG | + | chr4_4:73305638-73305657 | None:intergenic | 35.0% | |
| !!! | TAGCCTTTTTGAAGTGAAAC+AGG | + | chr4_4:73305723-73305742 | None:intergenic | 35.0% |
| !! | AAATTGCTTTTAGTTGTCCG+GGG | - | chr4_4:73305953-73305972 | Msa0701860:intron | 35.0% |
| AAAGGAGTTGAACGAGTTAA+AGG | - | chr4_4:73306008-73306027 | Msa0701860:intron | 35.0% | |
| AGTTAAAGGACTTCAAACTC+TGG | - | chr4_4:73306022-73306041 | Msa0701860:intron | 35.0% | |
| ! | TATGCTCCTTTTTACGAAGA+AGG | - | chr4_4:73306177-73306196 | Msa0701860:intron | 35.0% |
| ! | TCCTTTTTACGAAGAAGGAA+AGG | - | chr4_4:73306182-73306201 | Msa0701860:intron | 35.0% |
| ACCTTTCCTTCTTCGTAAAA+AGG | + | chr4_4:73306186-73306205 | None:intergenic | 35.0% | |
| TTCATAGGCTCAAATCTAGA+TGG | + | chr4_4:73306253-73306272 | None:intergenic | 35.0% | |
| CTTGATCTGTAAAGGTTCAT+AGG | + | chr4_4:73306268-73306287 | None:intergenic | 35.0% | |
| CTATGAACCTTTACAGATCA+AGG | - | chr4_4:73306266-73306285 | Msa0701860:five_prime_UTR | 35.0% | |
| GAACAATCCTTGATCTGTAA+AGG | + | chr4_4:73306276-73306295 | None:intergenic | 35.0% | |
| TGAAAGAGAAGAATGATCGG+TGG | + | chr4_4:73303987-73304006 | None:intergenic | 40.0% | |
| GAGATCAAAATCAGATCTGC+AGG | + | chr4_4:73304122-73304141 | None:intergenic | 40.0% | |
| TTCTCCCCTTCAAAATAGTG+AGG | + | chr4_4:73304821-73304840 | None:intergenic | 40.0% | |
| ! | TGACTGCAAGTTGAGGTTTA+TGG | - | chr4_4:73305049-73305068 | Msa0701860:CDS | 40.0% |
| AATTGTTCGTAACCTTCGAC+GGG | + | chr4_4:73305161-73305180 | None:intergenic | 40.0% | |
| !! | AGCATGGTGATGTTCTGTTT+TGG | - | chr4_4:73305277-73305296 | Msa0701860:intron | 40.0% |
| AGATTCAAGAGAGAGCTTGA+TGG | - | chr4_4:73305420-73305439 | Msa0701860:intron | 40.0% | |
| ACATCAAGACCAATCTCAGT+AGG | + | chr4_4:73305474-73305493 | None:intergenic | 40.0% | |
| TGGAGATCATTTAGTTGGCA+CGG | + | chr4_4:73305506-73305525 | None:intergenic | 40.0% | |
| GGTCCTGTTTCACTTCAAAA+AGG | - | chr4_4:73305717-73305736 | Msa0701860:intron | 40.0% | |
| ! | GATGATGTTTTCCGAGTTCA+AGG | - | chr4_4:73306084-73306103 | Msa0701860:intron | 40.0% |
| ! | CTCATGGTCTTGAGATTTCA+TGG | - | chr4_4:73306110-73306129 | Msa0701860:intron | 40.0% |
| TAGGCTCAAATCTAGATGGA+AGG | + | chr4_4:73306249-73306268 | None:intergenic | 40.0% | |
| AGAAGAATGATCGGTGGAAG+CGG | + | chr4_4:73303981-73304000 | None:intergenic | 45.0% | |
| TTGAACTAATCCAGCGGCAA+AGG | + | chr4_4:73304456-73304475 | None:intergenic | 45.0% | |
| TCCATGATGACTGCAAGTTG+AGG | - | chr4_4:73305042-73305061 | Msa0701860:CDS | 45.0% | |
| ACCTCAACTTGCAGTCATCA+TGG | + | chr4_4:73305046-73305065 | None:intergenic | 45.0% | |
| GTTGAGGTTTATGGAGCTCA+AGG | - | chr4_4:73305058-73305077 | Msa0701860:CDS | 45.0% | |
| TTATGGAGCTCAAGGCGAAA+AGG | - | chr4_4:73305066-73305085 | Msa0701860:CDS | 45.0% | |
| CAAGTCATTGTGGAGAAGCT+TGG | - | chr4_4:73305131-73305150 | Msa0701860:CDS | 45.0% | |
| AAGGCAATGTTCCCAAAAGC+AGG | - | chr4_4:73305243-73305262 | Msa0701860:intron | 45.0% | |
| GCCAGTTACTGTTGTAGCAT+CGG | - | chr4_4:73305303-73305322 | Msa0701860:intron | 45.0% | |
| ACCGATGCTACAACAGTAAC+TGG | + | chr4_4:73305307-73305326 | None:intergenic | 45.0% | |
| AAGGTCTCCTGACACATCAA+GGG | - | chr4_4:73305362-73305381 | Msa0701860:intron | 45.0% | |
| CTTCTAACCCTTGATGTGTC+AGG | + | chr4_4:73305372-73305391 | None:intergenic | 45.0% | |
| GCAACTGATCCTACTGAGAT+TGG | - | chr4_4:73305462-73305481 | Msa0701860:intron | 45.0% | |
| ! | AGCTCAATTGGTCTCAGCTA+AGG | - | chr4_4:73305982-73306001 | Msa0701860:intron | 45.0% |
| ! | GCTCAATTGGTCTCAGCTAA+GGG | - | chr4_4:73305983-73306002 | Msa0701860:intron | 45.0% |
| TGGTCTCAGCTAAGGGTTAA+AGG | - | chr4_4:73305990-73306009 | Msa0701860:intron | 45.0% | |
| ACCATGAGTGTCCTTGAACT+CGG | + | chr4_4:73306098-73306117 | None:intergenic | 45.0% | |
| TCAAACAGTTCCTTTGCCGC+TGG | - | chr4_4:73304443-73304462 | Msa0701860:three_prime_UTR | 50.0% | |
| TTACAGGCAAATGCGGCATC+CGG | - | chr4_4:73305011-73305030 | Msa0701860:CDS | 50.0% | |
| TCAAGGCGAAAAGGACACAC+AGG | - | chr4_4:73305075-73305094 | Msa0701860:CDS | 50.0% | |
| GAAGGTCTCCTGACACATCA+AGG | - | chr4_4:73305361-73305380 | Msa0701860:intron | 50.0% | |
| GCAGAAAAGGAAGCCACTGT+TGG | + | chr4_4:73305526-73305545 | None:intergenic | 50.0% | |
| ! | ACAGTGGCTTCCTTTTCTGC+TGG | - | chr4_4:73305526-73305545 | Msa0701860:intron | 50.0% |
| ! | CAGTGGCTTCCTTTTCTGCT+GGG | - | chr4_4:73305527-73305546 | Msa0701860:intron | 50.0% |
| ! | AGTGGCTTCCTTTTCTGCTG+GGG | - | chr4_4:73305528-73305547 | Msa0701860:intron | 50.0% |
| !! | TGCTTTTAGTTGTCCGGGGT+TGG | - | chr4_4:73305957-73305976 | Msa0701860:intron | 50.0% |
| !! | GCTTTTAGTTGTCCGGGGTT+GGG | - | chr4_4:73305958-73305977 | Msa0701860:intron | 50.0% |
| TCCGAGTTCAAGGACACTCA+TGG | - | chr4_4:73306094-73306113 | Msa0701860:intron | 50.0% | |
| AGAATGATCGGTGGAAGCGG+AGG | + | chr4_4:73303978-73303997 | None:intergenic | 55.0% | |
| AAATGCGGCATCCGGTATGG+CGG | - | chr4_4:73305019-73305038 | Msa0701860:CDS | 55.0% | |
| GTCATCATGGACCGCCATAC+CGG | + | chr4_4:73305033-73305052 | None:intergenic | 55.0% | |
| CCAATTGAGCTACCCAACCC+CGG | + | chr4_4:73305973-73305992 | None:intergenic | 55.0% | |
| GGAAGCGGAGGAGAAGGAGA+AGG | + | chr4_4:73303966-73303985 | None:intergenic | 60.0% | |
| ATCGGTGGAAGCGGAGGAGA+AGG | + | chr4_4:73303972-73303991 | None:intergenic | 60.0% | |
| GGCAAATGCGGCATCCGGTA+TGG | - | chr4_4:73305016-73305035 | Msa0701860:CDS | 60.0% | |
| GCACTCATCAGCAGGAAGGC+AGG | + | chr4_4:73305189-73305208 | None:intergenic | 60.0% | |
| AGCGGCACTCATCAGCAGGA+AGG | + | chr4_4:73305193-73305212 | None:intergenic | 60.0% | |
| GCATAGCGGCACTCATCAGC+AGG | + | chr4_4:73305197-73305216 | None:intergenic | 60.0% | |
| CCGGGGTTGGGTAGCTCAAT+TGG | - | chr4_4:73305970-73305989 | Msa0701860:intron | 60.0% | |
| AAGCTTGGCGAGCCCGTCGA+AGG | - | chr4_4:73305146-73305165 | Msa0701860:CDS | 65.0% | |
| GGGGCTCACCCCAGCAGAAA+AGG | + | chr4_4:73305539-73305558 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 73303872 | 73306354 | 73303872 | ID=Msa0701860;Name=Msa0701860 |
| chr4_4 | mRNA | 73303872 | 73306354 | 73303872 | ID=Msa0701860-mRNA-1;Parent=Msa0701860;Name=Msa0701860-mRNA-1;_AED=0.01;_eAED=0.01;_QI=138|1|1|1|1|1|3|839|139 |
| chr4_4 | exon | 73303872 | 73304861 | 73303872 | ID=Msa0701860-mRNA-1:exon:22511;Parent=Msa0701860-mRNA-1 |
| chr4_4 | exon | 73304944 | 73305209 | 73304944 | ID=Msa0701860-mRNA-1:exon:22510;Parent=Msa0701860-mRNA-1 |
| chr4_4 | exon | 73306214 | 73306354 | 73306214 | ID=Msa0701860-mRNA-1:exon:22509;Parent=Msa0701860-mRNA-1 |
| chr4_4 | five_prime_UTR | 73306217 | 73306354 | 73306217 | ID=Msa0701860-mRNA-1:five_prime_utr;Parent=Msa0701860-mRNA-1 |
| chr4_4 | CDS | 73306214 | 73306216 | 73306214 | ID=Msa0701860-mRNA-1:cds;Parent=Msa0701860-mRNA-1 |
| chr4_4 | CDS | 73304944 | 73305209 | 73304944 | ID=Msa0701860-mRNA-1:cds;Parent=Msa0701860-mRNA-1 |
| chr4_4 | CDS | 73304711 | 73304861 | 73304711 | ID=Msa0701860-mRNA-1:cds;Parent=Msa0701860-mRNA-1 |
| chr4_4 | three_prime_UTR | 73303872 | 73304710 | 73303872 | ID=Msa0701860-mRNA-1:three_prime_utr;Parent=Msa0701860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
