Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532120 | XP_003629907.1 | 97.842 | 139 | 3 | 0 | 1 | 139 | 1 | 139 | 2.70e-97 | 286 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532120 | sp|Q9FVI1|ADF2_PETHY | 84.173 | 139 | 22 | 0 | 1 | 139 | 1 | 139 | 9.76e-86 | 249 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532120 | G7L826 | 97.842 | 139 | 3 | 0 | 1 | 139 | 1 | 139 | 1.29e-97 | 286 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa0532120 | 0.802896 | 4.512558e-49 | -8.615850e-47 |
| Msa0029540 | Msa0532120 | 0.801840 | 7.448484e-49 | -8.615850e-47 |
| Msa0138970 | Msa0532120 | 0.802785 | 4.756778e-49 | -8.615850e-47 |
| Msa0532010 | Msa0532120 | 0.989611 | 7.191909e-179 | -8.615850e-47 |
| Msa0532120 | Msa0701860 | 0.982476 | 3.439209e-155 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532120 | MtrunA17_Chr8g0380291 | 97.842 | 139 | 3 | 0 | 1 | 139 | 1 | 139 | 2.48e-101 | 286 |
| Msa0532120 | MtrunA17_Chr2g0291571 | 88.489 | 139 | 16 | 0 | 1 | 139 | 1 | 139 | 6.14e-94 | 267 |
| Msa0532120 | MtrunA17_Chr1g0182501 | 79.137 | 139 | 29 | 0 | 1 | 139 | 1 | 139 | 2.54e-82 | 238 |
| Msa0532120 | MtrunA17_Chr8g0386651 | 72.464 | 138 | 36 | 1 | 1 | 138 | 1 | 136 | 4.14e-75 | 219 |
| Msa0532120 | MtrunA17_Chr1g0203211 | 69.565 | 138 | 40 | 1 | 1 | 138 | 25 | 160 | 1.12e-70 | 209 |
| Msa0532120 | MtrunA17_Chr5g0397641 | 68.841 | 138 | 41 | 1 | 1 | 138 | 1 | 136 | 3.18e-70 | 207 |
| Msa0532120 | MtrunA17_Chr7g0261251 | 59.124 | 137 | 56 | 0 | 3 | 139 | 10 | 146 | 1.59e-62 | 188 |
| Msa0532120 | MtrunA17_Chr4g0037251 | 58.519 | 135 | 56 | 0 | 4 | 138 | 8 | 142 | 1.38e-57 | 175 |
| Msa0532120 | MtrunA17_Chr1g0187771 | 56.522 | 138 | 60 | 0 | 2 | 139 | 10 | 147 | 3.75e-50 | 157 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532120 | AT3G46010.1 | 80.576 | 139 | 27 | 0 | 1 | 139 | 1 | 139 | 1.04e-86 | 249 |
| Msa0532120 | AT3G46010.2 | 80.435 | 138 | 27 | 0 | 2 | 139 | 13 | 150 | 6.36e-86 | 248 |
| Msa0532120 | AT5G59880.1 | 82.014 | 139 | 25 | 0 | 1 | 139 | 1 | 139 | 1.44e-85 | 246 |
| Msa0532120 | AT5G59890.1 | 80.576 | 139 | 27 | 0 | 1 | 139 | 1 | 139 | 4.51e-84 | 243 |
| Msa0532120 | AT3G46000.1 | 77.698 | 139 | 29 | 1 | 1 | 139 | 1 | 137 | 5.96e-79 | 229 |
| Msa0532120 | AT5G59890.3 | 79.545 | 132 | 27 | 0 | 8 | 139 | 1 | 132 | 1.67e-78 | 228 |
| Msa0532120 | AT5G59890.2 | 79.545 | 132 | 27 | 0 | 8 | 139 | 1 | 132 | 1.67e-78 | 228 |
| Msa0532120 | AT3G46000.2 | 76.978 | 139 | 30 | 1 | 1 | 139 | 20 | 156 | 5.26e-78 | 228 |
| Msa0532120 | AT3G46000.3 | 76.515 | 132 | 29 | 1 | 8 | 139 | 1 | 130 | 2.23e-73 | 215 |
| Msa0532120 | AT1G01750.1 | 69.784 | 139 | 42 | 0 | 1 | 139 | 1 | 139 | 3.69e-73 | 215 |
| Msa0532120 | AT4G00680.1 | 68.345 | 139 | 44 | 0 | 1 | 139 | 1 | 139 | 7.77e-73 | 214 |
| Msa0532120 | AT1G01750.2 | 69.565 | 138 | 42 | 0 | 2 | 139 | 7 | 144 | 2.96e-72 | 213 |
| Msa0532120 | AT4G00680.2 | 68.116 | 138 | 44 | 0 | 2 | 139 | 12 | 149 | 7.77e-72 | 212 |
| Msa0532120 | AT4G25590.1 | 70.290 | 138 | 39 | 1 | 1 | 138 | 1 | 136 | 2.65e-71 | 210 |
| Msa0532120 | AT5G52360.1 | 69.565 | 138 | 40 | 1 | 1 | 138 | 1 | 136 | 1.83e-70 | 208 |
| Msa0532120 | AT5G59880.2 | 71.223 | 139 | 25 | 1 | 1 | 139 | 1 | 124 | 2.36e-70 | 207 |
| Msa0532120 | AT4G25590.2 | 68.702 | 131 | 39 | 1 | 8 | 138 | 1 | 129 | 8.03e-66 | 196 |
| Msa0532120 | AT2G31200.1 | 54.745 | 137 | 62 | 0 | 3 | 139 | 10 | 146 | 2.44e-57 | 175 |
| Msa0532120 | AT4G34970.1 | 53.237 | 139 | 65 | 0 | 1 | 139 | 3 | 141 | 6.82e-55 | 169 |
| Msa0532120 | AT2G16700.1 | 53.333 | 135 | 63 | 0 | 4 | 138 | 8 | 142 | 6.45e-53 | 164 |
| Msa0532120 | AT2G16700.4 | 53.435 | 131 | 61 | 0 | 8 | 138 | 1 | 131 | 6.64e-51 | 158 |
| Msa0532120 | AT2G16700.2 | 53.435 | 131 | 61 | 0 | 8 | 138 | 1 | 131 | 6.64e-51 | 158 |
| Msa0532120 | AT3G45990.1 | 58.993 | 139 | 44 | 4 | 8 | 139 | 1 | 133 | 1.21e-49 | 155 |
| Msa0532120 | AT2G16700.3 | 51.724 | 87 | 42 | 0 | 4 | 90 | 8 | 94 | 1.81e-29 | 103 |
Find 82 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTTTCCTTCTTCGTAAAA+AGG | 0.195650 | 4_1:+6133271 | None:intergenic |
| AACTTCTAGTTTGTGTAATA+TGG | 0.207836 | 4_1:-6133871 | Msa0532120:three_prime_UTR |
| CATAAAAGTAACAAAGCATT+AGG | 0.216031 | 4_1:+6133896 | None:intergenic |
| TATCCTATCCATACAGAAAA+AGG | 0.261065 | 4_1:+6133705 | None:intergenic |
| TGACTGCAAGTTGAGGTTTA+TGG | 0.271763 | 4_1:-6134405 | Msa0532120:CDS |
| TGGTCTCAGCTAAGGGTTAA+AGG | 0.280838 | 4_1:-6133464 | Msa0532120:three_prime_UTR |
| CTCTCTCTTGAATCTATCTT+TGG | 0.282496 | 4_1:+6134042 | None:intergenic |
| TAAAAGAGTTGTATGGTTAT+TGG | 0.283322 | 4_1:+6133151 | None:intergenic |
| TCATTCTTCTCTTTCAATTA+TGG | 0.283630 | 4_1:-6135462 | Msa0532120:intron |
| AAAGGAGTTGAACGAGTTAA+AGG | 0.292541 | 4_1:-6133446 | Msa0532120:three_prime_UTR |
| CTCATGGTCTTGAGATTTCA+TGG | 0.315642 | 4_1:-6133344 | Msa0532120:three_prime_UTR |
| ATAAAAGTAACAAAGCATTA+GGG | 0.332932 | 4_1:+6133897 | None:intergenic |
| GGTCCTGTTTCACTTCAAAA+AGG | 0.352344 | 4_1:-6133737 | Msa0532120:three_prime_UTR |
| ATCAAAAGCAAAAGAATTGA+TGG | 0.352947 | 4_1:+6133535 | None:intergenic |
| AAATAAATGTTGTAAGTAAC+AGG | 0.355779 | 4_1:+6133667 | None:intergenic |
| ATGTTTGCTTTGCTTTGAAA+TGG | 0.368776 | 4_1:+6135547 | None:intergenic |
| CCGGGGTTGGGTAGCTCAAT+TGG | 0.369158 | 4_1:-6133484 | Msa0532120:three_prime_UTR |
| CTTGATCTGTAAAGGTTCAT+AGG | 0.388998 | 4_1:+6133189 | None:intergenic |
| TAGAATCTCAAATTACTCCT+AGG | 0.400479 | 4_1:-6133130 | Msa0532120:three_prime_UTR |
| TTCATGGTCTATTGTAATAT+AGG | 0.400965 | 4_1:-6133328 | Msa0532120:three_prime_UTR |
| GCATATCATAAAGCTAAGTT+TGG | 0.410663 | 4_1:+6133295 | None:intergenic |
| CTATGAACCTTTACAGATCA+AGG | 0.411073 | 4_1:-6133188 | Msa0532120:three_prime_UTR |
| GTTATGATATCCTATTCTAT+TGG | 0.419322 | 4_1:-6133633 | Msa0532120:three_prime_UTR |
| CTTCTAACCCTTGATGTGTC+AGG | 0.419707 | 4_1:+6134085 | None:intergenic |
| GAGATTCTAAAAGAGTTGTA+TGG | 0.434022 | 4_1:+6133144 | None:intergenic |
| TTCATAGGCTCAAATCTAGA+TGG | 0.444253 | 4_1:+6133204 | None:intergenic |
| GTTCATCATTTACAAGATTG+AGG | 0.446804 | 4_1:-6134357 | Msa0532120:CDS |
| AGCTCAATTGGTCTCAGCTA+AGG | 0.448050 | 4_1:-6133472 | Msa0532120:three_prime_UTR |
| TGTTTGCTTTGCTTTGAAAT+GGG | 0.449419 | 4_1:+6135548 | None:intergenic |
| GGGGCTCACCCCAGCAGAAA+AGG | 0.456032 | 4_1:+6133918 | None:intergenic |
| GAACAATCCTTGATCTGTAA+AGG | 0.457213 | 4_1:+6133181 | None:intergenic |
| GCACTCATCAGCAGGAAGGC+AGG | 0.460234 | 4_1:+6134268 | None:intergenic |
| GCAACTGATCCTACTGAGAT+TGG | 0.468027 | 4_1:-6133992 | Msa0532120:CDS |
| ACTGTTGGAGATCATTTAGT+TGG | 0.469715 | 4_1:+6133946 | None:intergenic |
| TAGTAATCAACCAATAGAAT+AGG | 0.470521 | 4_1:+6133623 | None:intergenic |
| GAAGGTCTCCTGACACATCA+AGG | 0.471655 | 4_1:-6134093 | Msa0532120:intron |
| TTACAGGCAAATGCGGCATC+CGG | 0.477481 | 4_1:-6134443 | Msa0532120:intron |
| ATCGGTGGAAGCGGAGGAGA+AGG | 0.496225 | 4_1:+6135484 | None:intergenic |
| GTCATCATGGACCGCCATAC+CGG | 0.500234 | 4_1:+6134424 | None:intergenic |
| ACCTCAACTTGCAGTCATCA+TGG | 0.504088 | 4_1:+6134411 | None:intergenic |
| TATGCCTCATTTATGTTGAG+TGG | 0.510069 | 4_1:-6133823 | Msa0532120:three_prime_UTR |
| AGATTCAAGAGAGAGCTTGA+TGG | 0.510719 | 4_1:-6134034 | Msa0532120:CDS |
| GCATAGCGGCACTCATCAGC+AGG | 0.511636 | 4_1:+6134260 | None:intergenic |
| GGCAAATGCGGCATCCGGTA+TGG | 0.514841 | 4_1:-6134438 | Msa0532120:CDS |
| CAAGTCATTGTGGAGAAGCT+TGG | 0.515016 | 4_1:-6134323 | Msa0532120:CDS |
| AGAATCTCAAATTACTCCTA+GGG | 0.515581 | 4_1:-6133129 | Msa0532120:three_prime_UTR |
| TAAAAGTAACAAAGCATTAG+GGG | 0.517509 | 4_1:+6133898 | None:intergenic |
| AAGGCAATGTTCCCAAAAGC+AGG | 0.520698 | 4_1:-6134211 | Msa0532120:CDS |
| AGAAGAATGATCGGTGGAAG+CGG | 0.534770 | 4_1:+6135475 | None:intergenic |
| TTATGGAGCTCAAGGCGAAA+AGG | 0.536997 | 4_1:-6134388 | Msa0532120:CDS |
| ACCATGAGTGTCCTTGAACT+CGG | 0.542503 | 4_1:+6133359 | None:intergenic |
| GATTATGAGTTTATGACTGA+AGG | 0.546901 | 4_1:-6134230 | Msa0532120:CDS |
| CAAATTCAACTTATAAGCAT+AGG | 0.548192 | 4_1:+6133791 | None:intergenic |
| TCCGAGTTCAAGGACACTCA+TGG | 0.553300 | 4_1:-6133360 | Msa0532120:three_prime_UTR |
| GTTGAGGTTTATGGAGCTCA+AGG | 0.554455 | 4_1:-6134396 | Msa0532120:CDS |
| AATTGTTCGTAACCTTCGAC+GGG | 0.561631 | 4_1:+6134296 | None:intergenic |
| AAATTGTTCGTAACCTTCGA+CGG | 0.562726 | 4_1:+6134295 | None:intergenic |
| GCAGAAAAGGAAGCCACTGT+TGG | 0.569013 | 4_1:+6133931 | None:intergenic |
| GCTCAATTGGTCTCAGCTAA+GGG | 0.577442 | 4_1:-6133471 | Msa0532120:three_prime_UTR |
| TGGAGATCATTTAGTTGGCA+CGG | 0.583240 | 4_1:+6133951 | None:intergenic |
| TAAATGTTGTAAGTAACAGG+TGG | 0.583911 | 4_1:+6133670 | None:intergenic |
| TAGGCTCAAATCTAGATGGA+AGG | 0.586490 | 4_1:+6133208 | None:intergenic |
| AAGCTTGGCGAGCCCGTCGA+AGG | 0.586923 | 4_1:-6134308 | Msa0532120:CDS |
| GGAAGCGGAGGAGAAGGAGA+AGG | 0.589223 | 4_1:+6135490 | None:intergenic |
| TCCATGATGACTGCAAGTTG+AGG | 0.591374 | 4_1:-6134412 | Msa0532120:CDS |
| AATGCCACTCAACATAAATG+AGG | 0.596164 | 4_1:+6133819 | None:intergenic |
| AAGGTCTCCTGACACATCAA+GGG | 0.598732 | 4_1:-6134092 | Msa0532120:CDS |
| ATGGTCTATTGTAATATAGG+CGG | 0.606950 | 4_1:-6133325 | Msa0532120:three_prime_UTR |
| AGTTAAAGGACTTCAAACTC+TGG | 0.612443 | 4_1:-6133432 | Msa0532120:three_prime_UTR |
| TGTCTAGAAGAAACTTCCCT+AGG | 0.614779 | 4_1:+6133113 | None:intergenic |
| AATTGAAAGAGAAGAATGAT+CGG | 0.621391 | 4_1:+6135466 | None:intergenic |
| AGCGGCACTCATCAGCAGGA+AGG | 0.621421 | 4_1:+6134264 | None:intergenic |
| TGAAAGAGAAGAATGATCGG+TGG | 0.621821 | 4_1:+6135469 | None:intergenic |
| ACATCAAGACCAATCTCAGT+AGG | 0.622765 | 4_1:+6133983 | None:intergenic |
| AAATGTTGTAAGTAACAGGT+GGG | 0.622786 | 4_1:+6133671 | None:intergenic |
| AACTAAATGATCTCCAACAG+TGG | 0.628963 | 4_1:-6133944 | Msa0532120:exon |
| CCAATTGAGCTACCCAACCC+CGG | 0.631662 | 4_1:+6133484 | None:intergenic |
| AGAATGATCGGTGGAAGCGG+AGG | 0.632387 | 4_1:+6135478 | None:intergenic |
| GAAACAGAAACAAGTCATTG+TGG | 0.633781 | 4_1:-6134333 | Msa0532120:CDS |
| AAATGCGGCATCCGGTATGG+CGG | 0.649579 | 4_1:-6134435 | Msa0532120:CDS |
| AAAAGTAACAAAGCATTAGG+GGG | 0.653891 | 4_1:+6133899 | None:intergenic |
| TCAAGGCGAAAAGGACACAC+AGG | 0.692606 | 4_1:-6134379 | Msa0532120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGAATTAAATTTTATGTTG+TGG | + | chr4_1:6133632-6133651 | None:intergenic | 15.0% |
| !! | TAAATCTTAAAAACCTAATT+AGG | - | chr4_1:6133777-6133796 | Msa0532120:three_prime_UTR | 15.0% |
| !! | AAATCTTAAAAACCTAATTA+GGG | - | chr4_1:6133778-6133797 | Msa0532120:three_prime_UTR | 15.0% |
| !!! | ACTTATTTTTTTAGCTATTT+TGG | - | chr4_1:6133867-6133886 | Msa0532120:three_prime_UTR | 15.0% |
| !!! | CTTATTTTTTTAGCTATTTT+GGG | - | chr4_1:6133868-6133887 | Msa0532120:three_prime_UTR | 15.0% |
| !!! | TTATTTTTTTAGCTATTTTG+GGG | - | chr4_1:6133869-6133888 | Msa0532120:three_prime_UTR | 15.0% |
| !! | TACAATCATTTATTTATTTG+AGG | - | chr4_1:6134145-6134164 | Msa0532120:intron | 15.0% |
| !!! | ACAACATTTATTTTTTTGTT+TGG | - | chr4_1:6135046-6135065 | Msa0532120:intron | 15.0% |
| !! | AAATGATAAAGTAAACAGAA+CGG | + | chr4_1:6133347-6133366 | None:intergenic | 20.0% |
| !!! | ATTAGGTTTGCTTAAAAAAT+GGG | + | chr4_1:6133477-6133496 | None:intergenic | 20.0% |
| !! | ACAGTAATCAAATAATCATT+AGG | + | chr4_1:6133494-6133513 | None:intergenic | 20.0% |
| !! | TTTATGTTGTGGTATAAAAA+TGG | + | chr4_1:6133621-6133640 | None:intergenic | 20.0% |
| !! | TATATATGTTCTATTTGGAT+TGG | + | chr4_1:6133733-6133752 | None:intergenic | 20.0% |
| !! | TTGCATATATATGTTCTATT+TGG | + | chr4_1:6133738-6133757 | None:intergenic | 20.0% |
| !! | TAATAATTTAACTAAGCACT+TGG | - | chr4_1:6133812-6133831 | Msa0532120:three_prime_UTR | 20.0% |
| !!! | AATAAGTTGATCAAAACTTA+TGG | - | chr4_1:6133895-6133914 | Msa0532120:three_prime_UTR | 20.0% |
| !! | TGAAGTATACTTCAAAAATA+AGG | - | chr4_1:6134014-6134033 | Msa0532120:CDS | 20.0% |
| !! | GAAGTATACTTCAAAAATAA+GGG | - | chr4_1:6134015-6134034 | Msa0532120:CDS | 20.0% |
| !!! | ATAAAAGTAACAAAGCATTA+GGG | + | chr4_1:6134809-6134828 | None:intergenic | 20.0% |
| !!! | TAATATATCCTTTTTCTGTA+TGG | - | chr4_1:6134990-6135009 | Msa0532120:intron | 20.0% |
| !! | AAATAAATGTTGTAAGTAAC+AGG | + | chr4_1:6135039-6135058 | None:intergenic | 20.0% |
| !!! | TTTTGCTTTTGATTATATGA+TGG | - | chr4_1:6135178-6135197 | Msa0532120:intron | 20.0% |
| !!! | AACATCATCATAAAACTTTT+TGG | + | chr4_1:6135322-6135341 | None:intergenic | 20.0% |
| ! | AATTGAAAGAGAAGAATGAT+CGG | + | chr4_1:6133240-6133259 | None:intergenic | 25.0% |
| ! | TCATTCTTCTCTTTCAATTA+TGG | - | chr4_1:6133241-6133260 | Msa0532120:three_prime_UTR | 25.0% |
| !! | CATTAGGTTTGCTTAAAAAA+TGG | + | chr4_1:6133478-6133497 | None:intergenic | 25.0% |
| ! | AATTAACCACTCAAAATCAT+AGG | - | chr4_1:6133519-6133538 | Msa0532120:three_prime_UTR | 25.0% |
| ! | TTGAAGTATACTTCAATCTA+GGG | + | chr4_1:6134009-6134028 | None:intergenic | 25.0% |
| !! | TTTGAAGTATACTTCAATCT+AGG | + | chr4_1:6134010-6134029 | None:intergenic | 25.0% |
| ! | AAAAATAAGGGAAACTTATG+TGG | - | chr4_1:6134027-6134046 | Msa0532120:CDS | 25.0% |
| ! | ACAAGCAGACATAATTTAAA+CGG | + | chr4_1:6134173-6134192 | None:intergenic | 25.0% |
| !! | TTATGTGTCTGTAATTTTAC+AGG | - | chr4_1:6134244-6134263 | Msa0532120:CDS | 25.0% |
| !!! | ATGAAAAAAATCCTGCTTTT+GGG | + | chr4_1:6134506-6134525 | None:intergenic | 25.0% |
| !! | TATGAAAAAAATCCTGCTTT+TGG | + | chr4_1:6134507-6134526 | None:intergenic | 25.0% |
| !! | AACATGATAGTTTCTTTTGA+AGG | - | chr4_1:6134592-6134611 | Msa0532120:intron | 25.0% |
| !! | TAAAAGTAACAAAGCATTAG+GGG | + | chr4_1:6134808-6134827 | None:intergenic | 25.0% |
| !! | CATAAAAGTAACAAAGCATT+AGG | + | chr4_1:6134810-6134829 | None:intergenic | 25.0% |
| !!! | AACTTCTAGTTTGTGTAATA+TGG | - | chr4_1:6134832-6134851 | Msa0532120:intron | 25.0% |
| ! | CAAATTCAACTTATAAGCAT+AGG | + | chr4_1:6134915-6134934 | None:intergenic | 25.0% |
| ! | TTGTGTGATCAAACAAAAAA+TGG | - | chr4_1:6134943-6134962 | Msa0532120:intron | 25.0% |
| ! | TGTGTGATCAAACAAAAAAT+GGG | - | chr4_1:6134944-6134963 | Msa0532120:intron | 25.0% |
| ! | GTTATGATATCCTATTCTAT+TGG | - | chr4_1:6135070-6135089 | Msa0532120:intron | 25.0% |
| ! | TAGTAATCAACCAATAGAAT+AGG | + | chr4_1:6135083-6135102 | None:intergenic | 25.0% |
| ! | ATCAAAAGCAAAAGAATTGA+TGG | + | chr4_1:6135171-6135190 | None:intergenic | 25.0% |
| ! | TTCATGGTCTATTGTAATAT+AGG | - | chr4_1:6135375-6135394 | Msa0532120:intron | 25.0% |
| ! | TAAAAGAGTTGTATGGTTAT+TGG | + | chr4_1:6135555-6135574 | None:intergenic | 25.0% |
| !! | TGTTTGCTTTGCTTTGAAAT+GGG | + | chr4_1:6133158-6133177 | None:intergenic | 30.0% |
| !! | ATGTTTGCTTTGCTTTGAAA+TGG | + | chr4_1:6133159-6133178 | None:intergenic | 30.0% |
| GAATCAGCATTTAAGAAAGA+TGG | + | chr4_1:6133282-6133301 | None:intergenic | 30.0% | |
| ! | TTTTCGTAATTCCATCATTC+AGG | - | chr4_1:6133542-6133561 | Msa0532120:three_prime_UTR | 30.0% |
| CATAATATTGACCTGAATGA+TGG | + | chr4_1:6133556-6133575 | None:intergenic | 30.0% | |
| AAAACTTATGGATCTGTCAT+CGG | - | chr4_1:6133907-6133926 | Msa0532120:three_prime_UTR | 30.0% | |
| TGAAGTATACTTCAATCTAG+GGG | + | chr4_1:6134008-6134027 | None:intergenic | 30.0% | |
| !! | TGAAAACCTCACTATTTTGA+AGG | - | chr4_1:6134061-6134080 | Msa0532120:CDS | 30.0% |
| !! | GAAAACCTCACTATTTTGAA+GGG | - | chr4_1:6134062-6134081 | Msa0532120:CDS | 30.0% |
| !! | AAAACCTCACTATTTTGAAG+GGG | - | chr4_1:6134063-6134082 | Msa0532120:CDS | 30.0% |
| AGAGAAAACACGATAAAACT+TGG | + | chr4_1:6134108-6134127 | None:intergenic | 30.0% | |
| CAGTTTCAATCGAACTATTT+GGG | - | chr4_1:6134214-6134233 | Msa0532120:CDS | 30.0% | |
| ! | TGTAATTTTACAGGCAAATG+CGG | - | chr4_1:6134253-6134272 | Msa0532120:CDS | 30.0% |
| GTTCATCATTTACAAGATTG+AGG | - | chr4_1:6134346-6134365 | Msa0532120:CDS | 30.0% | |
| CATAATCAAAAACAGCATAG+CGG | + | chr4_1:6134460-6134479 | None:intergenic | 30.0% | |
| GATTATGAGTTTATGACTGA+AGG | - | chr4_1:6134473-6134492 | Msa0532120:intron | 30.0% | |
| ! | AAAAGTAACAAAGCATTAGG+GGG | + | chr4_1:6134807-6134826 | None:intergenic | 30.0% |
| GTGTGATCAAACAAAAAATG+GGG | - | chr4_1:6134945-6134964 | Msa0532120:intron | 30.0% | |
| ! | TATCCTTTTTCTGTATGGAT+AGG | - | chr4_1:6134995-6135014 | Msa0532120:intron | 30.0% |
| TATCCTATCCATACAGAAAA+AGG | + | chr4_1:6135001-6135020 | None:intergenic | 30.0% | |
| ! | TTTTTCTGTATGGATAGGAT+AGG | - | chr4_1:6135000-6135019 | Msa0532120:intron | 30.0% |
| AAATGTTGTAAGTAACAGGT+GGG | + | chr4_1:6135035-6135054 | None:intergenic | 30.0% | |
| TAAATGTTGTAAGTAACAGG+TGG | + | chr4_1:6135036-6135055 | None:intergenic | 30.0% | |
| !! | GAAAATTGCTTTTAGTTGTC+CGG | - | chr4_1:6135200-6135219 | Msa0532120:intron | 30.0% |
| !! | AAAATTGCTTTTAGTTGTCC+GGG | - | chr4_1:6135201-6135220 | Msa0532120:intron | 30.0% |
| ATGGTCTATTGTAATATAGG+CGG | - | chr4_1:6135378-6135397 | Msa0532120:intron | 30.0% | |
| GCATATCATAAAGCTAAGTT+TGG | + | chr4_1:6135411-6135430 | None:intergenic | 30.0% | |
| ! | GAGATTCTAAAAGAGTTGTA+TGG | + | chr4_1:6135562-6135581 | None:intergenic | 30.0% |
| TAGAATCTCAAATTACTCCT+AGG | - | chr4_1:6135573-6135592 | Msa0532120:five_prime_UTR | 30.0% | |
| AGAATCTCAAATTACTCCTA+GGG | - | chr4_1:6135574-6135593 | Msa0532120:five_prime_UTR | 30.0% | |
| TCAGCATTTAAGAAAGATGG+AGG | + | chr4_1:6133279-6133298 | None:intergenic | 35.0% | |
| ! | CGAAAACCTATGATTTTGAG+TGG | + | chr4_1:6133528-6133547 | None:intergenic | 35.0% |
| GCTTATTTGAACTAATCCAG+CGG | + | chr4_1:6133711-6133730 | None:intergenic | 35.0% | |
| ! | AAACCTAATTAGGGCTTGTT+TGG | - | chr4_1:6133787-6133806 | Msa0532120:three_prime_UTR | 35.0% |
| AATCCAAACAAGCCCTAATT+AGG | + | chr4_1:6133793-6133812 | None:intergenic | 35.0% | |
| CCAAATAGTTCGATTGAAAC+TGG | + | chr4_1:6134216-6134235 | None:intergenic | 35.0% | |
| CCAGTTTCAATCGAACTATT+TGG | - | chr4_1:6134213-6134232 | Msa0532120:CDS | 35.0% | |
| GAAACAGAAACAAGTCATTG+TGG | - | chr4_1:6134370-6134389 | Msa0532120:CDS | 35.0% | |
| AAATTGTTCGTAACCTTCGA+CGG | + | chr4_1:6134411-6134430 | None:intergenic | 35.0% | |
| !!! | GCAGGATTTTTTTCATAGCA+TGG | - | chr4_1:6134510-6134529 | Msa0532120:intron | 35.0% |
| CTCTCTCTTGAATCTATCTT+TGG | + | chr4_1:6134664-6134683 | None:intergenic | 35.0% | |
| ACTGTTGGAGATCATTTAGT+TGG | + | chr4_1:6134760-6134779 | None:intergenic | 35.0% | |
| AACTAAATGATCTCCAACAG+TGG | - | chr4_1:6134759-6134778 | Msa0532120:intron | 35.0% | |
| TATGCCTCATTTATGTTGAG+TGG | - | chr4_1:6134880-6134899 | Msa0532120:intron | 35.0% | |
| AATGCCACTCAACATAAATG+AGG | + | chr4_1:6134887-6134906 | None:intergenic | 35.0% | |
| !!! | TAGCCTTTTTGAAGTGAAAC+AGG | + | chr4_1:6134972-6134991 | None:intergenic | 35.0% |
| !! | AAATTGCTTTTAGTTGTCCG+GGG | - | chr4_1:6135202-6135221 | Msa0532120:intron | 35.0% |
| AAAGGAGTTGAACGAGTTAA+AGG | - | chr4_1:6135257-6135276 | Msa0532120:intron | 35.0% | |
| AGTTAAAGGACTTCAAACTC+TGG | - | chr4_1:6135271-6135290 | Msa0532120:intron | 35.0% | |
| ! | TATGCTCCTTTTTACGAAGA+AGG | - | chr4_1:6135426-6135445 | Msa0532120:intron | 35.0% |
| ! | TCCTTTTTACGAAGAAGGAA+AGG | - | chr4_1:6135431-6135450 | Msa0532120:intron | 35.0% |
| ACCTTTCCTTCTTCGTAAAA+AGG | + | chr4_1:6135435-6135454 | None:intergenic | 35.0% | |
| TTCATAGGCTCAAATCTAGA+TGG | + | chr4_1:6135502-6135521 | None:intergenic | 35.0% | |
| CTTGATCTGTAAAGGTTCAT+AGG | + | chr4_1:6135517-6135536 | None:intergenic | 35.0% | |
| CTATGAACCTTTACAGATCA+AGG | - | chr4_1:6135515-6135534 | Msa0532120:five_prime_UTR | 35.0% | |
| GAACAATCCTTGATCTGTAA+AGG | + | chr4_1:6135525-6135544 | None:intergenic | 35.0% | |
| TGAAAGAGAAGAATGATCGG+TGG | + | chr4_1:6133237-6133256 | None:intergenic | 40.0% | |
| GAGATCAAAATCAGATCTGC+AGG | + | chr4_1:6133371-6133390 | None:intergenic | 40.0% | |
| TTCTCCCCTTCAAAATAGTG+AGG | + | chr4_1:6134070-6134089 | None:intergenic | 40.0% | |
| ! | TGACTGCAAGTTGAGGTTTA+TGG | - | chr4_1:6134298-6134317 | Msa0532120:CDS | 40.0% |
| AATTGTTCGTAACCTTCGAC+GGG | + | chr4_1:6134410-6134429 | None:intergenic | 40.0% | |
| !! | AGCATGGTGATGTTCTGTTT+TGG | - | chr4_1:6134526-6134545 | Msa0532120:intron | 40.0% |
| AGATTCAAGAGAGAGCTTGA+TGG | - | chr4_1:6134669-6134688 | Msa0532120:intron | 40.0% | |
| ACATCAAGACCAATCTCAGT+AGG | + | chr4_1:6134723-6134742 | None:intergenic | 40.0% | |
| TGGAGATCATTTAGTTGGCA+CGG | + | chr4_1:6134755-6134774 | None:intergenic | 40.0% | |
| GGTCCTGTTTCACTTCAAAA+AGG | - | chr4_1:6134966-6134985 | Msa0532120:intron | 40.0% | |
| ! | GATGATGTTTTCCGAGTTCA+AGG | - | chr4_1:6135333-6135352 | Msa0532120:intron | 40.0% |
| ! | CTCATGGTCTTGAGATTTCA+TGG | - | chr4_1:6135359-6135378 | Msa0532120:intron | 40.0% |
| TAGGCTCAAATCTAGATGGA+AGG | + | chr4_1:6135498-6135517 | None:intergenic | 40.0% | |
| AGAAGAATGATCGGTGGAAG+CGG | + | chr4_1:6133231-6133250 | None:intergenic | 45.0% | |
| TTGAACTAATCCAGCGGCAA+AGG | + | chr4_1:6133705-6133724 | None:intergenic | 45.0% | |
| TCCATGATGACTGCAAGTTG+AGG | - | chr4_1:6134291-6134310 | Msa0532120:CDS | 45.0% | |
| ACCTCAACTTGCAGTCATCA+TGG | + | chr4_1:6134295-6134314 | None:intergenic | 45.0% | |
| GTTGAGGTTTATGGAGCTCA+AGG | - | chr4_1:6134307-6134326 | Msa0532120:CDS | 45.0% | |
| TTATGGAGCTCAAGGCGAAA+AGG | - | chr4_1:6134315-6134334 | Msa0532120:CDS | 45.0% | |
| CAAGTCATTGTGGAGAAGCT+TGG | - | chr4_1:6134380-6134399 | Msa0532120:CDS | 45.0% | |
| AAGGCAATGTTCCCAAAAGC+AGG | - | chr4_1:6134492-6134511 | Msa0532120:intron | 45.0% | |
| GCCAGTTACTGTTGTAGCAT+CGG | - | chr4_1:6134552-6134571 | Msa0532120:intron | 45.0% | |
| ACCGATGCTACAACAGTAAC+TGG | + | chr4_1:6134556-6134575 | None:intergenic | 45.0% | |
| AAGGTCTCCTGACACATCAA+GGG | - | chr4_1:6134611-6134630 | Msa0532120:intron | 45.0% | |
| CTTCTAACCCTTGATGTGTC+AGG | + | chr4_1:6134621-6134640 | None:intergenic | 45.0% | |
| GCAACTGATCCTACTGAGAT+TGG | - | chr4_1:6134711-6134730 | Msa0532120:intron | 45.0% | |
| ! | AGCTCAATTGGTCTCAGCTA+AGG | - | chr4_1:6135231-6135250 | Msa0532120:intron | 45.0% |
| ! | GCTCAATTGGTCTCAGCTAA+GGG | - | chr4_1:6135232-6135251 | Msa0532120:intron | 45.0% |
| TGGTCTCAGCTAAGGGTTAA+AGG | - | chr4_1:6135239-6135258 | Msa0532120:intron | 45.0% | |
| ACCATGAGTGTCCTTGAACT+CGG | + | chr4_1:6135347-6135366 | None:intergenic | 45.0% | |
| TCAAACAGTTCCTTTGCCGC+TGG | - | chr4_1:6133692-6133711 | Msa0532120:three_prime_UTR | 50.0% | |
| TTACAGGCAAATGCGGCATC+CGG | - | chr4_1:6134260-6134279 | Msa0532120:CDS | 50.0% | |
| TCAAGGCGAAAAGGACACAC+AGG | - | chr4_1:6134324-6134343 | Msa0532120:CDS | 50.0% | |
| GAAGGTCTCCTGACACATCA+AGG | - | chr4_1:6134610-6134629 | Msa0532120:intron | 50.0% | |
| GCAGAAAAGGAAGCCACTGT+TGG | + | chr4_1:6134775-6134794 | None:intergenic | 50.0% | |
| ! | ACAGTGGCTTCCTTTTCTGC+TGG | - | chr4_1:6134775-6134794 | Msa0532120:intron | 50.0% |
| ! | CAGTGGCTTCCTTTTCTGCT+GGG | - | chr4_1:6134776-6134795 | Msa0532120:intron | 50.0% |
| ! | AGTGGCTTCCTTTTCTGCTG+GGG | - | chr4_1:6134777-6134796 | Msa0532120:intron | 50.0% |
| !! | TGCTTTTAGTTGTCCGGGGT+TGG | - | chr4_1:6135206-6135225 | Msa0532120:intron | 50.0% |
| !! | GCTTTTAGTTGTCCGGGGTT+GGG | - | chr4_1:6135207-6135226 | Msa0532120:intron | 50.0% |
| TCCGAGTTCAAGGACACTCA+TGG | - | chr4_1:6135343-6135362 | Msa0532120:intron | 50.0% | |
| AGAATGATCGGTGGAAGCGG+AGG | + | chr4_1:6133228-6133247 | None:intergenic | 55.0% | |
| AAATGCGGCATCCGGTATGG+CGG | - | chr4_1:6134268-6134287 | Msa0532120:CDS | 55.0% | |
| GTCATCATGGACCGCCATAC+CGG | + | chr4_1:6134282-6134301 | None:intergenic | 55.0% | |
| CCAATTGAGCTACCCAACCC+CGG | + | chr4_1:6135222-6135241 | None:intergenic | 55.0% | |
| GGAAGCGGAGGAGAAGGAGA+AGG | + | chr4_1:6133216-6133235 | None:intergenic | 60.0% | |
| ATCGGTGGAAGCGGAGGAGA+AGG | + | chr4_1:6133222-6133241 | None:intergenic | 60.0% | |
| GGCAAATGCGGCATCCGGTA+TGG | - | chr4_1:6134265-6134284 | Msa0532120:CDS | 60.0% | |
| GCACTCATCAGCAGGAAGGC+AGG | + | chr4_1:6134438-6134457 | None:intergenic | 60.0% | |
| AGCGGCACTCATCAGCAGGA+AGG | + | chr4_1:6134442-6134461 | None:intergenic | 60.0% | |
| GCATAGCGGCACTCATCAGC+AGG | + | chr4_1:6134446-6134465 | None:intergenic | 60.0% | |
| CCGGGGTTGGGTAGCTCAAT+TGG | - | chr4_1:6135219-6135238 | Msa0532120:intron | 60.0% | |
| AAGCTTGGCGAGCCCGTCGA+AGG | - | chr4_1:6134395-6134414 | Msa0532120:CDS | 65.0% | |
| GGGGCTCACCCCAGCAGAAA+AGG | + | chr4_1:6134788-6134807 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 6133122 | 6135603 | 6133122 | ID=Msa0532120;Name=Msa0532120 |
| chr4_1 | mRNA | 6133122 | 6135603 | 6133122 | ID=Msa0532120-mRNA-1;Parent=Msa0532120;Name=Msa0532120-mRNA-1;_AED=0.01;_eAED=0.01;_QI=138|1|1|1|1|1|3|839|139 |
| chr4_1 | exon | 6133122 | 6134111 | 6133122 | ID=Msa0532120-mRNA-1:exon:2164;Parent=Msa0532120-mRNA-1 |
| chr4_1 | exon | 6134194 | 6134459 | 6134194 | ID=Msa0532120-mRNA-1:exon:2163;Parent=Msa0532120-mRNA-1 |
| chr4_1 | exon | 6135463 | 6135603 | 6135463 | ID=Msa0532120-mRNA-1:exon:2162;Parent=Msa0532120-mRNA-1 |
| chr4_1 | five_prime_UTR | 6135466 | 6135603 | 6135466 | ID=Msa0532120-mRNA-1:five_prime_utr;Parent=Msa0532120-mRNA-1 |
| chr4_1 | CDS | 6135463 | 6135465 | 6135463 | ID=Msa0532120-mRNA-1:cds;Parent=Msa0532120-mRNA-1 |
| chr4_1 | CDS | 6134194 | 6134459 | 6134194 | ID=Msa0532120-mRNA-1:cds;Parent=Msa0532120-mRNA-1 |
| chr4_1 | CDS | 6133961 | 6134111 | 6133961 | ID=Msa0532120-mRNA-1:cds;Parent=Msa0532120-mRNA-1 |
| chr4_1 | three_prime_UTR | 6133122 | 6133960 | 6133122 | ID=Msa0532120-mRNA-1:three_prime_utr;Parent=Msa0532120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
