Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532040 | XP_003629911.1 | 95.172 | 290 | 14 | 0 | 1 | 290 | 1 | 290 | 0.0 | 575 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532040 | sp|Q9ZUD9|SRO2_ARATH | 39.850 | 266 | 157 | 3 | 18 | 281 | 50 | 314 | 4.34e-62 | 202 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532040 | G7L830 | 95.172 | 290 | 14 | 0 | 1 | 290 | 1 | 290 | 0.0 | 575 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0532040 | Msa0532150 | 0.930604 | 1.285267e-93 | -8.615850e-47 |
| Msa0532040 | Msa0701880 | 0.897305 | 1.599842e-76 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532040 | MtrunA17_Chr8g0380321 | 95.172 | 290 | 14 | 0 | 1 | 290 | 1 | 290 | 0.0 | 575 |
| Msa0532040 | MtrunA17_Chr3g0117631 | 38.760 | 258 | 146 | 4 | 23 | 279 | 60 | 306 | 2.71e-55 | 181 |
| Msa0532040 | MtrunA17_Chr4g0059061 | 35.740 | 277 | 162 | 5 | 19 | 290 | 43 | 308 | 7.30e-54 | 177 |
| Msa0532040 | MtrunA17_Chr1g0210871 | 31.271 | 291 | 155 | 9 | 26 | 279 | 277 | 559 | 1.75e-33 | 128 |
| Msa0532040 | MtrunA17_Chr5g0412301 | 28.328 | 293 | 162 | 6 | 26 | 279 | 270 | 553 | 2.08e-31 | 122 |
| Msa0532040 | MtrunA17_Chr5g0410781 | 32.418 | 182 | 112 | 5 | 26 | 204 | 66 | 239 | 5.99e-27 | 105 |
| Msa0532040 | MtrunA17_Chr7g0217951 | 34.807 | 181 | 107 | 5 | 27 | 204 | 254 | 426 | 7.99e-26 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532040 | AT1G23550.1 | 39.850 | 266 | 157 | 3 | 18 | 281 | 50 | 314 | 4.42e-63 | 202 |
| Msa0532040 | AT1G70440.2 | 38.060 | 268 | 161 | 3 | 16 | 282 | 40 | 303 | 3.37e-60 | 194 |
| Msa0532040 | AT1G70440.1 | 38.060 | 268 | 161 | 3 | 16 | 282 | 40 | 303 | 3.37e-60 | 194 |
| Msa0532040 | AT5G62520.1 | 33.577 | 274 | 163 | 8 | 11 | 279 | 41 | 300 | 1.89e-42 | 148 |
| Msa0532040 | AT3G47720.1 | 30.769 | 247 | 143 | 6 | 43 | 279 | 77 | 305 | 1.26e-30 | 117 |
| Msa0532040 | AT5G62520.2 | 34.500 | 200 | 119 | 6 | 11 | 207 | 41 | 231 | 3.41e-30 | 114 |
| Msa0532040 | AT1G32230.3 | 31.559 | 263 | 135 | 5 | 58 | 280 | 306 | 563 | 4.60e-30 | 119 |
| Msa0532040 | AT1G32230.6 | 31.559 | 263 | 135 | 5 | 58 | 280 | 306 | 563 | 5.41e-30 | 119 |
| Msa0532040 | AT1G32230.4 | 31.559 | 263 | 135 | 5 | 58 | 280 | 306 | 563 | 5.41e-30 | 119 |
| Msa0532040 | AT1G32230.2 | 31.559 | 263 | 135 | 5 | 58 | 280 | 306 | 563 | 5.41e-30 | 119 |
| Msa0532040 | AT1G32230.5 | 31.559 | 263 | 135 | 5 | 58 | 280 | 306 | 563 | 5.41e-30 | 119 |
| Msa0532040 | AT1G32230.1 | 31.439 | 264 | 135 | 5 | 58 | 280 | 306 | 564 | 7.86e-30 | 118 |
| Msa0532040 | AT2G35510.1 | 26.837 | 313 | 168 | 9 | 15 | 280 | 263 | 561 | 8.92e-22 | 95.5 |
| Msa0532040 | AT2G35510.3 | 26.837 | 313 | 168 | 9 | 15 | 280 | 263 | 561 | 8.92e-22 | 95.5 |
| Msa0532040 | AT2G35510.2 | 33.333 | 192 | 115 | 6 | 15 | 204 | 263 | 443 | 7.56e-21 | 92.4 |
Find 59 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAAAGGGTATGGGATTTA+TGG | 0.128492 | 4_1:-6074222 | Msa0532040:CDS |
| GGAACAGATCCAGGTGTATT+TGG | 0.158775 | 4_1:-6072078 | Msa0532040:intron |
| AGCTTGCTTTGTCAAATTAG+AGG | 0.285711 | 4_1:+6074157 | None:intergenic |
| CACCTAGAAAACATATTATA+TGG | 0.300865 | 4_1:-6073122 | Msa0532040:CDS |
| GAAACTTGTGCCACTAGATT+AGG | 0.336353 | 4_1:+6072021 | None:intergenic |
| TTTGACAAAGCAAGCTCGTT+TGG | 0.351330 | 4_1:-6074150 | Msa0532040:CDS |
| GAACAGATCCAGGTGTATTT+GGG | 0.359387 | 4_1:-6072077 | Msa0532040:intron |
| CTCATAGATATTGTATCATC+TGG | 0.369323 | 4_1:-6074035 | Msa0532040:CDS |
| TAACAAGACATATTCTGATT+GGG | 0.382519 | 4_1:+6072044 | None:intergenic |
| CCCCAACTATCTTCCTCACT+TGG | 0.386648 | 4_1:+6071782 | None:intergenic |
| ACCAAGTGAGGAAGATAGTT+GGG | 0.401844 | 4_1:-6071783 | Msa0532040:CDS |
| AACAGAGCCAACCTAGTTGC+AGG | 0.402138 | 4_1:-6073176 | Msa0532040:CDS |
| GAATATCAATTCATTAAGAA+AGG | 0.426175 | 4_1:-6074248 | Msa0532040:CDS |
| GGAAACGTTGTTCTTATGAA+TGG | 0.429255 | 4_1:+6074178 | None:intergenic |
| GTAACAAGACATATTCTGAT+TGG | 0.436441 | 4_1:+6072043 | None:intergenic |
| ATAAACTACTTACCTATCAA+TGG | 0.440863 | 4_1:+6073932 | None:intergenic |
| ATTGTATCATCTGGATTCAC+TGG | 0.458602 | 4_1:-6074026 | Msa0532040:CDS |
| GTTCCAAAATTGAACTAAAG+AGG | 0.463519 | 4_1:+6071709 | None:intergenic |
| ATTGAGAAAATGACTTGCAA+TGG | 0.465836 | 4_1:-6074302 | Msa0532040:CDS |
| AAAAGATTACAAGAGAATCA+TGG | 0.467073 | 4_1:-6071810 | Msa0532040:CDS |
| TTGAGAAAATGACTTGCAAT+GGG | 0.484339 | 4_1:-6074301 | Msa0532040:CDS |
| CATATTGCCTGCAACTAGGT+TGG | 0.513312 | 4_1:+6073169 | None:intergenic |
| AAAGATTACAAGAGAATCAT+GGG | 0.522819 | 4_1:-6071809 | Msa0532040:CDS |
| TGTTGGAATTTCGTTATCAT+CGG | 0.530134 | 4_1:-6073964 | Msa0532040:CDS |
| TTGCTATGCAAGGTGATACT+AGG | 0.531298 | 4_1:-6073228 | Msa0532040:CDS |
| AAAGGGTATGGGATTTATGG+TGG | 0.531665 | 4_1:-6074219 | Msa0532040:CDS |
| AACCAAGTGAGGAAGATAGT+TGG | 0.532207 | 4_1:-6071784 | Msa0532040:CDS |
| AATGTTAGGTGTGCTTGGTA+TGG | 0.533854 | 4_1:-6074074 | Msa0532040:CDS |
| TTTAAGTATAACTATGTGAA+GGG | 0.544236 | 4_1:-6073054 | Msa0532040:intron |
| ATGCTAATGTTAGGTGTGCT+TGG | 0.544874 | 4_1:-6074079 | Msa0532040:CDS |
| GTTTACTTACTTGGTAGATA+CGG | 0.547975 | 4_1:+6071953 | None:intergenic |
| GTGTCATATTGCCTGCAACT+AGG | 0.549854 | 4_1:+6073165 | None:intergenic |
| AACAAGACATATTCTGATTG+GGG | 0.553733 | 4_1:+6072045 | None:intergenic |
| GTGGAGGTAATGCTAATGTT+AGG | 0.556638 | 4_1:-6074088 | Msa0532040:CDS |
| AACAAAGTAGAGGAAGAGAG+TGG | 0.559058 | 4_1:-6074272 | Msa0532040:CDS |
| GTTAGGTGTGCTTGGTATGG+TGG | 0.562625 | 4_1:-6074071 | Msa0532040:CDS |
| TCAACGGTGGGAGATGAGAA+TGG | 0.565464 | 4_1:-6073264 | Msa0532040:CDS |
| AAGAGGATGCACATAGCCAC+TGG | 0.569354 | 4_1:+6071726 | None:intergenic |
| TGGGAGATGAGAATGGTTTG+AGG | 0.575457 | 4_1:-6073257 | Msa0532040:CDS |
| AGTAACAGAGACATTTGTGA+TGG | 0.589593 | 4_1:+6071985 | None:intergenic |
| TTTAGTGTCCCAAATACACC+TGG | 0.594133 | 4_1:+6072069 | None:intergenic |
| GATGATGAGTCTCACGGTGT+TGG | 0.594179 | 4_1:-6073981 | Msa0532040:CDS |
| TATGCAAGGTGATACTAGGA+AGG | 0.601134 | 4_1:-6073224 | Msa0532040:CDS |
| GACAGTGCAATGTCAACGGT+GGG | 0.604803 | 4_1:-6073276 | Msa0532040:intron |
| TGTCTTGTTACCTAATCTAG+TGG | 0.613356 | 4_1:-6072031 | Msa0532040:CDS |
| GATCGACAGTGCAATGTCAA+CGG | 0.619344 | 4_1:-6073280 | Msa0532040:intron |
| AATCATGGGTAAACCAAGTG+AGG | 0.622332 | 4_1:-6071795 | Msa0532040:CDS |
| TGGATGCAATATTCATGTAG+AGG | 0.624432 | 4_1:-6074006 | Msa0532040:CDS |
| TGGGTTAATGAACAAAGTAG+AGG | 0.626934 | 4_1:-6074282 | Msa0532040:CDS |
| TTAAAACTTACGATATACTC+AGG | 0.630698 | 4_1:+6073072 | None:intergenic |
| GAGGCATGTGTTGCTATGCA+AGG | 0.634228 | 4_1:-6073238 | Msa0532040:CDS |
| AAGGCGGTGTCAATCAAATG+TGG | 0.639055 | 4_1:-6074107 | Msa0532040:CDS |
| CGACAGTGCAATGTCAACGG+TGG | 0.649224 | 4_1:-6073277 | Msa0532040:intron |
| CCAAGTGAGGAAGATAGTTG+GGG | 0.664741 | 4_1:-6071782 | Msa0532040:CDS |
| ATGCAAGGTGATACTAGGAA+GGG | 0.665756 | 4_1:-6073223 | Msa0532040:CDS |
| GTGATCACTGATAAATCCAG+TGG | 0.668876 | 4_1:-6071742 | Msa0532040:CDS |
| GCGGTGTCAATCAAATGTGG+AGG | 0.676525 | 4_1:-6074104 | Msa0532040:CDS |
| AGTTGCAGGCAATATGACAC+AGG | 0.697404 | 4_1:-6073162 | Msa0532040:CDS |
| GAGGATGATGATGAGTCTCA+CGG | 0.720276 | 4_1:-6073987 | Msa0532040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAAAAATAAAATAA+AGG | + | chr4_1:6073047-6073066 | None:intergenic | 0.0% |
| !! | TAAAAAAATAAAATAAAGGT+GGG | + | chr4_1:6073043-6073062 | None:intergenic | 10.0% |
| !! | ATAAAAAAATAAAATAAAGG+TGG | + | chr4_1:6073044-6073063 | None:intergenic | 10.0% |
| !! | AATATAACAAAAATTTAATG+TGG | + | chr4_1:6073148-6073167 | None:intergenic | 10.0% |
| !!! | ATTAAGAAAGGTTTTTTAAA+GGG | - | chr4_1:6071798-6071817 | Msa0532040:CDS | 15.0% |
| !! | ATTTGATCATATTATTTATG+AGG | + | chr4_1:6072370-6072389 | None:intergenic | 15.0% |
| !! | TAAGAAAATTACTAAGAATT+TGG | - | chr4_1:6072725-6072744 | Msa0532040:intron | 15.0% |
| !!! | AATTGATTTTATCTGAATTT+AGG | - | chr4_1:6073332-6073351 | Msa0532040:intron | 15.0% |
| !!! | ATTGATTTTATCTGAATTTA+GGG | - | chr4_1:6073333-6073352 | Msa0532040:intron | 15.0% |
| !!! | AACGAAATATTTTAACATAA+GGG | + | chr4_1:6073466-6073485 | None:intergenic | 15.0% |
| !!! | TAACGAAATATTTTAACATA+AGG | + | chr4_1:6073467-6073486 | None:intergenic | 15.0% |
| !! | TCATCAATTGAAAAATAAAT+TGG | + | chr4_1:6073736-6073755 | None:intergenic | 15.0% |
| !! | TGATTAAAACTAAATTATGT+TGG | - | chr4_1:6074190-6074209 | Msa0532040:CDS | 15.0% |
| !! | GATTAAAACTAAATTATGTT+GGG | - | chr4_1:6074191-6074210 | Msa0532040:CDS | 15.0% |
| !! | ATTAAAACTAAATTATGTTG+GGG | - | chr4_1:6074192-6074211 | Msa0532040:CDS | 15.0% |
| !! | GAATATCAATTCATTAAGAA+AGG | - | chr4_1:6071786-6071805 | Msa0532040:CDS | 20.0% |
| !!! | CATTAAGAAAGGTTTTTTAA+AGG | - | chr4_1:6071797-6071816 | Msa0532040:CDS | 20.0% |
| !! | ATTGTAGAATTGATTATTAG+AGG | + | chr4_1:6072445-6072464 | None:intergenic | 20.0% |
| !! | TATATCTTTATATGGATCAA+TGG | - | chr4_1:6072595-6072614 | Msa0532040:intron | 20.0% |
| !!! | TTTTAAGTATAACTATGTGA+AGG | - | chr4_1:6072979-6072998 | Msa0532040:intron | 20.0% |
| !! | TTTAAGTATAACTATGTGAA+GGG | - | chr4_1:6072980-6072999 | Msa0532040:intron | 20.0% |
| !!! | CATAACAAGGTTTTAAATTA+CGG | + | chr4_1:6073227-6073246 | None:intergenic | 20.0% |
| !! | TTGAAATTACAATAGATTGT+GGG | + | chr4_1:6073406-6073425 | None:intergenic | 20.0% |
| !!! | TTTGAAATTACAATAGATTG+TGG | + | chr4_1:6073407-6073426 | None:intergenic | 20.0% |
| !!! | ACATTAACTCTTTTCATATA+GGG | + | chr4_1:6073566-6073585 | None:intergenic | 20.0% |
| !! | TTATTAGTTATTACACATTC+AGG | - | chr4_1:6073692-6073711 | Msa0532040:intron | 20.0% |
| !!! | TACTAACCATATATTGATTT+TGG | - | chr4_1:6073935-6073954 | Msa0532040:intron | 20.0% |
| !! | AAAAACATTGTTTACTTACT+TGG | + | chr4_1:6074093-6074112 | None:intergenic | 20.0% |
| !! | TTTATAATTGCTATGCTTTA+AGG | - | chr4_1:6074110-6074129 | Msa0532040:CDS | 20.0% |
| !!! | AAAGGTTTTTTAAAGGGTAT+GGG | - | chr4_1:6071804-6071823 | Msa0532040:CDS | 25.0% |
| !! | TTCATTTCACATTTTCTCTA+AGG | - | chr4_1:6071908-6071927 | Msa0532040:intron | 25.0% |
| ! | ATAAACTACTTACCTATCAA+TGG | + | chr4_1:6072105-6072124 | None:intergenic | 25.0% |
| ! | AGGTAAGTAGTTTATATACA+TGG | - | chr4_1:6072110-6072129 | Msa0532040:intron | 25.0% |
| ! | AGTCATAATATGATTGTAGT+TGG | - | chr4_1:6072145-6072164 | Msa0532040:intron | 25.0% |
| !! | ATTTTCATGAATCATGAACT+AGG | - | chr4_1:6072320-6072339 | Msa0532040:intron | 25.0% |
| !!! | ATGAACTAGGTTTTGATTAA+AGG | - | chr4_1:6072333-6072352 | Msa0532040:intron | 25.0% |
| ! | TATTATTTATGAGGAAGAGA+TGG | + | chr4_1:6072361-6072380 | None:intergenic | 25.0% |
| ! | AAGGATGCAAATATATACAA+GGG | + | chr4_1:6072523-6072542 | None:intergenic | 25.0% |
| ! | AAAGGATGCAAATATATACA+AGG | + | chr4_1:6072524-6072543 | None:intergenic | 25.0% |
| ! | CACCTAGAAAACATATTATA+TGG | - | chr4_1:6072912-6072931 | Msa0532040:intron | 25.0% |
| !! | GTCCATATAATATGTTTTCT+AGG | + | chr4_1:6072917-6072936 | None:intergenic | 25.0% |
| ! | TTAAAACTTACGATATACTC+AGG | + | chr4_1:6072965-6072984 | None:intergenic | 25.0% |
| !! | TACTAAATGTCAAGGTTTTT+GGG | - | chr4_1:6073100-6073119 | Msa0532040:CDS | 25.0% |
| ! | ACTAAGAAATGTTCATAACA+AGG | + | chr4_1:6073240-6073259 | None:intergenic | 25.0% |
| ! | AATCAATTTCATTAAACGAC+TGG | + | chr4_1:6073320-6073339 | None:intergenic | 25.0% |
| ! | TCCTTGAATGTTTAATTAGT+AGG | - | chr4_1:6073371-6073390 | Msa0532040:intron | 25.0% |
| ! | GAATAACATAATGCAAATCA+AGG | + | chr4_1:6073435-6073454 | None:intergenic | 25.0% |
| !! | GACATTAACTCTTTTCATAT+AGG | + | chr4_1:6073567-6073586 | None:intergenic | 25.0% |
| ! | AAGCATTTGATACAAATATC+AGG | + | chr4_1:6073899-6073918 | None:intergenic | 25.0% |
| ! | TCTGTTCCAAAATCAATATA+TGG | + | chr4_1:6073944-6073963 | None:intergenic | 25.0% |
| ! | TAACAAGACATATTCTGATT+GGG | + | chr4_1:6073993-6074012 | None:intergenic | 25.0% |
| !! | TGCTTTGTTACTTAAATTTG+CGG | - | chr4_1:6074160-6074179 | Msa0532040:CDS | 25.0% |
| ! | AAAAGATTACAAGAGAATCA+TGG | - | chr4_1:6074224-6074243 | Msa0532040:CDS | 25.0% |
| ! | AAAGATTACAAGAGAATCAT+GGG | - | chr4_1:6074225-6074244 | Msa0532040:CDS | 25.0% |
| !! | TTGCAAGTCATTTTCTCAAT+TGG | + | chr4_1:6071732-6071751 | None:intergenic | 30.0% |
| ! | ATTGAGAAAATGACTTGCAA+TGG | - | chr4_1:6071732-6071751 | Msa0532040:CDS | 30.0% |
| ! | TTGAGAAAATGACTTGCAAT+GGG | - | chr4_1:6071733-6071752 | Msa0532040:CDS | 30.0% |
| !!! | GAAAGGTTTTTTAAAGGGTA+TGG | - | chr4_1:6071803-6071822 | Msa0532040:CDS | 30.0% |
| ! | TTTAAAGGGTATGGGATTTA+TGG | - | chr4_1:6071812-6071831 | Msa0532040:CDS | 30.0% |
| !! | ATTTCACATTTTCTCTAAGG+CGG | - | chr4_1:6071911-6071930 | Msa0532040:intron | 30.0% |
| CTCATAGATATTGTATCATC+TGG | - | chr4_1:6071999-6072018 | Msa0532040:CDS | 30.0% | |
| TGTTGGAATTTCGTTATCAT+CGG | - | chr4_1:6072070-6072089 | Msa0532040:CDS | 30.0% | |
| ! | CTTTTATCGATGACTATTCA+GGG | - | chr4_1:6072540-6072559 | Msa0532040:intron | 30.0% |
| TTGCTCGCTATATCTTTATA+TGG | - | chr4_1:6072587-6072606 | Msa0532040:intron | 30.0% | |
| GATAACAATTTGTATGCCAA+CGG | - | chr4_1:6072694-6072713 | Msa0532040:intron | 30.0% | |
| ! | TTTTCTTAGAAATCATCCGT+TGG | + | chr4_1:6072713-6072732 | None:intergenic | 30.0% |
| TTCAATTTCACCATCATAGT+TGG | - | chr4_1:6073077-6073096 | Msa0532040:CDS | 30.0% | |
| ACATTTAGTACCAACTATGA+TGG | + | chr4_1:6073090-6073109 | None:intergenic | 30.0% | |
| ! | ATAGTTGGTACTAAATGTCA+AGG | - | chr4_1:6073092-6073111 | Msa0532040:CDS | 30.0% |
| ! | GTACTAAATGTCAAGGTTTT+TGG | - | chr4_1:6073099-6073118 | Msa0532040:CDS | 30.0% |
| GTTATGAACATTTCTTAGTC+AGG | - | chr4_1:6073241-6073260 | Msa0532040:CDS | 30.0% | |
| GCCTACTAATTAAACATTCA+AGG | + | chr4_1:6073375-6073394 | None:intergenic | 30.0% | |
| ATAAGTACTTACTGTCATCT+CGG | - | chr4_1:6073539-6073558 | Msa0532040:intron | 30.0% | |
| ! | TACAAATATCAGGTTGTGAA+GGG | + | chr4_1:6073889-6073908 | None:intergenic | 30.0% |
| ! | ATACAAATATCAGGTTGTGA+AGG | + | chr4_1:6073890-6073909 | None:intergenic | 30.0% |
| AACAAGACATATTCTGATTG+GGG | + | chr4_1:6073992-6074011 | None:intergenic | 30.0% | |
| GTAACAAGACATATTCTGAT+TGG | + | chr4_1:6073994-6074013 | None:intergenic | 30.0% | |
| GTTTACTTACTTGGTAGATA+CGG | + | chr4_1:6074084-6074103 | None:intergenic | 30.0% | |
| TGGGTTAATGAACAAAGTAG+AGG | - | chr4_1:6071752-6071771 | Msa0532040:CDS | 35.0% | |
| GGAAACGTTGTTCTTATGAA+TGG | + | chr4_1:6071859-6071878 | None:intergenic | 35.0% | |
| ! | AGCTTGCTTTGTCAAATTAG+AGG | + | chr4_1:6071880-6071899 | None:intergenic | 35.0% |
| ATTGTATCATCTGGATTCAC+TGG | - | chr4_1:6072008-6072027 | Msa0532040:CDS | 35.0% | |
| TGGATGCAATATTCATGTAG+AGG | - | chr4_1:6072028-6072047 | Msa0532040:CDS | 35.0% | |
| ! | CGGCTAATTTTTCCATTGAT+AGG | - | chr4_1:6072090-6072109 | Msa0532040:intron | 35.0% |
| ! | TCTCATTGATTGTTACACGT+AGG | - | chr4_1:6072396-6072415 | Msa0532040:intron | 35.0% |
| TGCAAATATATACAAGGGCA+AGG | + | chr4_1:6072518-6072537 | None:intergenic | 35.0% | |
| CCTGAATAGTCATCGATAAA+AGG | + | chr4_1:6072542-6072561 | None:intergenic | 35.0% | |
| ! | CCTTTTATCGATGACTATTC+AGG | - | chr4_1:6072539-6072558 | Msa0532040:intron | 35.0% |
| AAGAGTTAATGTCACTATCG+AGG | - | chr4_1:6073574-6073593 | Msa0532040:intron | 35.0% | |
| AGAGTTAATGTCACTATCGA+GGG | - | chr4_1:6073575-6073594 | Msa0532040:intron | 35.0% | |
| ACTAACAACGTGCACATAAT+CGG | - | chr4_1:6073625-6073644 | Msa0532040:intron | 35.0% | |
| !!! | ATTGATTTTGGAACAGATCC+AGG | - | chr4_1:6073947-6073966 | Msa0532040:CDS | 35.0% |
| ! | TGTCTTGTTACCTAATCTAG+TGG | - | chr4_1:6074003-6074022 | Msa0532040:CDS | 35.0% |
| AGTAACAGAGACATTTGTGA+TGG | + | chr4_1:6074052-6074071 | None:intergenic | 35.0% | |
| ACTAAATTATGTTGGGGATC+AGG | - | chr4_1:6074198-6074217 | Msa0532040:CDS | 35.0% | |
| AACAAAGTAGAGGAAGAGAG+TGG | - | chr4_1:6071762-6071781 | Msa0532040:CDS | 40.0% | |
| ! | AAAGGGTATGGGATTTATGG+TGG | - | chr4_1:6071815-6071834 | Msa0532040:CDS | 40.0% |
| TTTGACAAAGCAAGCTCGTT+TGG | - | chr4_1:6071884-6071903 | Msa0532040:intron | 40.0% | |
| GTGGAGGTAATGCTAATGTT+AGG | - | chr4_1:6071946-6071965 | Msa0532040:intron | 40.0% | |
| ATGCTAATGTTAGGTGTGCT+TGG | - | chr4_1:6071955-6071974 | Msa0532040:intron | 40.0% | |
| AATGTTAGGTGTGCTTGGTA+TGG | - | chr4_1:6071960-6071979 | Msa0532040:intron | 40.0% | |
| ATATATACAAGGGCAAGGCA+AGG | + | chr4_1:6072513-6072532 | None:intergenic | 40.0% | |
| TTGCTATGCAAGGTGATACT+AGG | - | chr4_1:6072806-6072825 | Msa0532040:intron | 40.0% | |
| TATGCAAGGTGATACTAGGA+AGG | - | chr4_1:6072810-6072829 | Msa0532040:intron | 40.0% | |
| ATGCAAGGTGATACTAGGAA+GGG | - | chr4_1:6072811-6072830 | Msa0532040:intron | 40.0% | |
| !! | TGGCTCTGTTTTGAATCAAC+AGG | + | chr4_1:6072848-6072867 | None:intergenic | 40.0% |
| CTAACAACGTGCACATAATC+GGG | - | chr4_1:6073626-6073645 | Msa0532040:intron | 40.0% | |
| GAACAGATCCAGGTGTATTT+GGG | - | chr4_1:6073957-6073976 | Msa0532040:CDS | 40.0% | |
| TTTAGTGTCCCAAATACACC+TGG | + | chr4_1:6073968-6073987 | None:intergenic | 40.0% | |
| ! | GAAACTTGTGCCACTAGATT+AGG | + | chr4_1:6074016-6074035 | None:intergenic | 40.0% |
| AATCATGGGTAAACCAAGTG+AGG | - | chr4_1:6074239-6074258 | Msa0532040:CDS | 40.0% | |
| AACCAAGTGAGGAAGATAGT+TGG | - | chr4_1:6074250-6074269 | Msa0532040:CDS | 40.0% | |
| ACCAAGTGAGGAAGATAGTT+GGG | - | chr4_1:6074251-6074270 | Msa0532040:CDS | 40.0% | |
| GTGATCACTGATAAATCCAG+TGG | - | chr4_1:6074292-6074311 | Msa0532040:CDS | 40.0% | |
| ! | AAGGCGGTGTCAATCAAATG+TGG | - | chr4_1:6071927-6071946 | Msa0532040:intron | 45.0% |
| ! | GAGGATGATGATGAGTCTCA+CGG | - | chr4_1:6072047-6072066 | Msa0532040:CDS | 45.0% |
| GATCGACAGTGCAATGTCAA+CGG | - | chr4_1:6072754-6072773 | Msa0532040:intron | 45.0% | |
| TGGGAGATGAGAATGGTTTG+AGG | - | chr4_1:6072777-6072796 | Msa0532040:intron | 45.0% | |
| CATATTGCCTGCAACTAGGT+TGG | + | chr4_1:6072868-6072887 | None:intergenic | 45.0% | |
| GTGTCATATTGCCTGCAACT+AGG | + | chr4_1:6072872-6072891 | None:intergenic | 45.0% | |
| AGTTGCAGGCAATATGACAC+AGG | - | chr4_1:6072872-6072891 | Msa0532040:intron | 45.0% | |
| !!! | TGTCAAGGTTTTTGGGTGCA+AGG | - | chr4_1:6073107-6073126 | Msa0532040:CDS | 45.0% |
| GTGCAAGGCAATTGCAATTG+AGG | - | chr4_1:6073122-6073141 | Msa0532040:CDS | 45.0% | |
| TCCTATGATGACCGTCTTAG+TGG | - | chr4_1:6073858-6073877 | Msa0532040:intron | 45.0% | |
| ! | ATATCAGGTTGTGAAGGGCA+AGG | + | chr4_1:6073884-6073903 | None:intergenic | 45.0% |
| GGAACAGATCCAGGTGTATT+TGG | - | chr4_1:6073956-6073975 | Msa0532040:CDS | 45.0% | |
| CCAAGTGAGGAAGATAGTTG+GGG | - | chr4_1:6074252-6074271 | Msa0532040:CDS | 45.0% | |
| !! | TCAAAAAAAAAAAAAAATTA+CGG | + | chr4_1:6073192-6073211 | None:intergenic | 5.0% |
| !!! | ATTTTATTAAAATGTTAATA+TGG | + | chr4_1:6073269-6073288 | None:intergenic | 5.0% |
| ! | GCGGTGTCAATCAAATGTGG+AGG | - | chr4_1:6071930-6071949 | Msa0532040:intron | 50.0% |
| GTTAGGTGTGCTTGGTATGG+TGG | - | chr4_1:6071963-6071982 | Msa0532040:CDS | 50.0% | |
| GATGATGAGTCTCACGGTGT+TGG | - | chr4_1:6072053-6072072 | Msa0532040:CDS | 50.0% | |
| GACAGTGCAATGTCAACGGT+GGG | - | chr4_1:6072758-6072777 | Msa0532040:intron | 50.0% | |
| TCAACGGTGGGAGATGAGAA+TGG | - | chr4_1:6072770-6072789 | Msa0532040:intron | 50.0% | |
| ! | GAGGCATGTGTTGCTATGCA+AGG | - | chr4_1:6072796-6072815 | Msa0532040:intron | 50.0% |
| AACAGAGCCAACCTAGTTGC+AGG | - | chr4_1:6072858-6072877 | Msa0532040:intron | 50.0% | |
| GCCACTAAGACGGTCATCAT+AGG | + | chr4_1:6073862-6073881 | None:intergenic | 50.0% | |
| CCCCAACTATCTTCCTCACT+TGG | + | chr4_1:6074255-6074274 | None:intergenic | 50.0% | |
| AAGAGGATGCACATAGCCAC+TGG | + | chr4_1:6074311-6074330 | None:intergenic | 50.0% | |
| TACAAGGGCAAGGCAAGGCA+AGG | + | chr4_1:6072508-6072527 | None:intergenic | 55.0% | |
| CGACAGTGCAATGTCAACGG+TGG | - | chr4_1:6072757-6072776 | Msa0532040:intron | 55.0% | |
| GAAGGGCAAGGCCACTAAGA+CGG | + | chr4_1:6073872-6073891 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 6071723 | 6074333 | 6071723 | ID=Msa0532040;Name=Msa0532040 |
| chr4_1 | mRNA | 6071723 | 6074333 | 6071723 | ID=Msa0532040-mRNA-1;Parent=Msa0532040;Name=Msa0532040-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0.66|0|1|1|1|4|0|290 |
| chr4_1 | exon | 6073945 | 6074333 | 6073945 | ID=Msa0532040-mRNA-1:exon:2081;Parent=Msa0532040-mRNA-1 |
| chr4_1 | exon | 6073055 | 6073293 | 6073055 | ID=Msa0532040-mRNA-1:exon:2080;Parent=Msa0532040-mRNA-1 |
| chr4_1 | exon | 6071963 | 6072093 | 6071963 | ID=Msa0532040-mRNA-1:exon:2079;Parent=Msa0532040-mRNA-1 |
| chr4_1 | exon | 6071723 | 6071836 | 6071723 | ID=Msa0532040-mRNA-1:exon:2078;Parent=Msa0532040-mRNA-1 |
| chr4_1 | CDS | 6073945 | 6074333 | 6073945 | ID=Msa0532040-mRNA-1:cds;Parent=Msa0532040-mRNA-1 |
| chr4_1 | CDS | 6073055 | 6073293 | 6073055 | ID=Msa0532040-mRNA-1:cds;Parent=Msa0532040-mRNA-1 |
| chr4_1 | CDS | 6071963 | 6072093 | 6071963 | ID=Msa0532040-mRNA-1:cds;Parent=Msa0532040-mRNA-1 |
| chr4_1 | CDS | 6071723 | 6071836 | 6071723 | ID=Msa0532040-mRNA-1:cds;Parent=Msa0532040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
