Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701880 | XP_003629911.1 | 95.517 | 290 | 13 | 0 | 1 | 290 | 1 | 290 | 0.0 | 577 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701880 | sp|Q9ZUD9|SRO2_ARATH | 39.474 | 266 | 158 | 3 | 18 | 281 | 50 | 314 | 1.69e-61 | 200 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701880 | G7L830 | 95.517 | 290 | 13 | 0 | 1 | 290 | 1 | 290 | 0.0 | 577 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0051450 | Msa0701880 | 0.814506 | 1.488238e-51 | -8.615850e-47 |
| Msa0101830 | Msa0701880 | 0.806428 | 8.264440e-50 | -8.615850e-47 |
| Msa0701880 | Msa1377080 | 0.803078 | 4.139185e-49 | -8.615850e-47 |
| Msa0438040 | Msa0701880 | 0.813228 | 2.846864e-51 | -8.615850e-47 |
| Msa0532040 | Msa0701880 | 0.897305 | 1.599842e-76 | -8.615850e-47 |
| Msa0532150 | Msa0701880 | 0.928864 | 1.577449e-92 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701880 | MtrunA17_Chr8g0380321 | 95.517 | 290 | 13 | 0 | 1 | 290 | 1 | 290 | 0.0 | 577 |
| Msa0701880 | MtrunA17_Chr3g0117631 | 38.760 | 258 | 146 | 4 | 23 | 279 | 60 | 306 | 2.74e-55 | 181 |
| Msa0701880 | MtrunA17_Chr4g0059061 | 35.740 | 277 | 162 | 5 | 19 | 290 | 43 | 308 | 6.85e-54 | 178 |
| Msa0701880 | MtrunA17_Chr1g0210871 | 31.271 | 291 | 155 | 9 | 26 | 279 | 277 | 559 | 1.83e-33 | 128 |
| Msa0701880 | MtrunA17_Chr5g0412301 | 28.328 | 293 | 162 | 6 | 26 | 279 | 270 | 553 | 2.18e-31 | 122 |
| Msa0701880 | MtrunA17_Chr5g0410781 | 31.667 | 180 | 116 | 4 | 26 | 204 | 66 | 239 | 6.31e-27 | 105 |
| Msa0701880 | MtrunA17_Chr7g0217951 | 34.807 | 181 | 107 | 5 | 27 | 204 | 254 | 426 | 7.46e-26 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701880 | AT1G23550.1 | 39.474 | 266 | 158 | 3 | 18 | 281 | 50 | 314 | 1.72e-62 | 200 |
| Msa0701880 | AT1G70440.2 | 37.687 | 268 | 162 | 3 | 16 | 282 | 40 | 303 | 1.08e-59 | 192 |
| Msa0701880 | AT1G70440.1 | 37.687 | 268 | 162 | 3 | 16 | 282 | 40 | 303 | 1.08e-59 | 192 |
| Msa0701880 | AT5G62520.1 | 33.577 | 274 | 163 | 8 | 11 | 279 | 41 | 300 | 3.02e-42 | 147 |
| Msa0701880 | AT3G47720.1 | 30.769 | 247 | 143 | 6 | 43 | 279 | 77 | 305 | 1.12e-30 | 117 |
| Msa0701880 | AT5G62520.2 | 34.500 | 200 | 119 | 6 | 11 | 207 | 41 | 231 | 4.57e-30 | 114 |
| Msa0701880 | AT1G32230.3 | 31.559 | 263 | 135 | 5 | 58 | 280 | 306 | 563 | 7.07e-30 | 119 |
| Msa0701880 | AT1G32230.6 | 31.559 | 263 | 135 | 5 | 58 | 280 | 306 | 563 | 9.24e-30 | 118 |
| Msa0701880 | AT1G32230.4 | 31.559 | 263 | 135 | 5 | 58 | 280 | 306 | 563 | 9.24e-30 | 118 |
| Msa0701880 | AT1G32230.2 | 31.559 | 263 | 135 | 5 | 58 | 280 | 306 | 563 | 9.24e-30 | 118 |
| Msa0701880 | AT1G32230.5 | 31.559 | 263 | 135 | 5 | 58 | 280 | 306 | 563 | 9.24e-30 | 118 |
| Msa0701880 | AT1G32230.1 | 31.439 | 264 | 135 | 5 | 58 | 280 | 306 | 564 | 1.37e-29 | 118 |
| Msa0701880 | AT2G35510.1 | 26.198 | 313 | 170 | 8 | 15 | 280 | 263 | 561 | 1.43e-21 | 94.7 |
| Msa0701880 | AT2G35510.3 | 26.198 | 313 | 170 | 8 | 15 | 280 | 263 | 561 | 1.43e-21 | 94.7 |
| Msa0701880 | AT2G35510.2 | 32.292 | 192 | 117 | 5 | 15 | 204 | 263 | 443 | 1.09e-20 | 92.0 |
Find 58 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAAAGGGTATGGGATTTA+TGG | 0.128492 | 4_4:-73315973 | Msa0701880:CDS |
| GGAACAGATCCAGGTGTATT+TGG | 0.158775 | 4_4:-73313912 | Msa0701880:intron |
| AGCTTGCTTTGTCAAATTAG+AGG | 0.285711 | 4_4:+73315908 | None:intergenic |
| CACCTAGAAAACATATTATA+TGG | 0.300865 | 4_4:-73314873 | Msa0701880:CDS |
| GAAACTTGTGCCACTAGATT+AGG | 0.336353 | 4_4:+73313855 | None:intergenic |
| TTTGACAAAGCAAGCTCGTT+TGG | 0.351330 | 4_4:-73315901 | Msa0701880:CDS |
| GAACAGATCCAGGTGTATTT+GGG | 0.359387 | 4_4:-73313911 | Msa0701880:intron |
| CTCATAGATATTGTATCATC+TGG | 0.369323 | 4_4:-73315786 | Msa0701880:CDS |
| TAACAAGACATATTCTGATT+GGG | 0.382519 | 4_4:+73313878 | None:intergenic |
| CCCCAACTATCTTCCTCACT+TGG | 0.386648 | 4_4:+73313620 | None:intergenic |
| ACCAAGTGAGGAAGATAGTT+GGG | 0.401844 | 4_4:-73313621 | Msa0701880:CDS |
| AACAGAGCCAACCTAGTTGC+AGG | 0.402138 | 4_4:-73314927 | Msa0701880:CDS |
| GAATATCAATTCATTAAGAA+AGG | 0.426175 | 4_4:-73315999 | Msa0701880:CDS |
| GGAAACGTTGTTCTTATGAA+TGG | 0.429255 | 4_4:+73315929 | None:intergenic |
| GTAACAAGACATATTCTGAT+TGG | 0.436441 | 4_4:+73313877 | None:intergenic |
| ATAAACTACTTACCTATCAA+TGG | 0.440863 | 4_4:+73315683 | None:intergenic |
| ATTGTATCATCTGGATTCAC+TGG | 0.458602 | 4_4:-73315777 | Msa0701880:CDS |
| GTTCCAAAATTGAACTAAAG+AGG | 0.463519 | 4_4:+73313547 | None:intergenic |
| ATTGAGAAAATGACTTGCAA+TGG | 0.465836 | 4_4:-73316053 | Msa0701880:CDS |
| AAAAGATTACAAGAGAATCA+TGG | 0.467073 | 4_4:-73313648 | Msa0701880:CDS |
| TTGAGAAAATGACTTGCAAT+GGG | 0.484339 | 4_4:-73316052 | Msa0701880:CDS |
| CATTGTTTACTTGGTAGATA+CGG | 0.501755 | 4_4:+73313787 | None:intergenic |
| CATATTGCCTGCAACTAGGT+TGG | 0.513312 | 4_4:+73314920 | None:intergenic |
| AAAGATTACAAGAGAATCAT+GGG | 0.522819 | 4_4:-73313647 | Msa0701880:CDS |
| TGTTGGAATTTCGTTATCAT+CGG | 0.530134 | 4_4:-73315715 | Msa0701880:CDS |
| TTGCTATGCAAGGTGATACT+AGG | 0.531298 | 4_4:-73314979 | Msa0701880:CDS |
| AAAGGGTATGGGATTTATGG+TGG | 0.531665 | 4_4:-73315970 | Msa0701880:CDS |
| AACCAAGTGAGGAAGATAGT+TGG | 0.532207 | 4_4:-73313622 | Msa0701880:CDS |
| AATGTTAGGTGTGCTTGGTA+TGG | 0.533854 | 4_4:-73315825 | Msa0701880:CDS |
| TTTAAGTATAACTATGTGAA+GGG | 0.544236 | 4_4:-73314805 | Msa0701880:intron |
| ATGCTAATGTTAGGTGTGCT+TGG | 0.544874 | 4_4:-73315830 | Msa0701880:CDS |
| GTGTCATATTGCCTGCAACT+AGG | 0.549854 | 4_4:+73314916 | None:intergenic |
| AACAAGACATATTCTGATTG+GGG | 0.553733 | 4_4:+73313879 | None:intergenic |
| GTGGAGGTAATGCTAATGTT+AGG | 0.556638 | 4_4:-73315839 | Msa0701880:CDS |
| AACAAAGTAGAGGAAGAGAG+TGG | 0.559058 | 4_4:-73316023 | Msa0701880:CDS |
| GATGATGAGTCTCACGGTGT+TGG | 0.561627 | 4_4:-73315732 | Msa0701880:CDS |
| GTTAGGTGTGCTTGGTATGG+TGG | 0.562625 | 4_4:-73315822 | Msa0701880:CDS |
| TCAACGGTGGGAGATGAGAA+TGG | 0.565464 | 4_4:-73315015 | Msa0701880:CDS |
| AAGAGGATGCACATAGCCAC+TGG | 0.569354 | 4_4:+73313564 | None:intergenic |
| TGGGAGATGAGAATGGTTTG+AGG | 0.575457 | 4_4:-73315008 | Msa0701880:CDS |
| AGTAACAGAGACATTTGTGA+TGG | 0.589593 | 4_4:+73313819 | None:intergenic |
| TTTAGTGTCCCAAATACACC+TGG | 0.594133 | 4_4:+73313903 | None:intergenic |
| GACAGTGCAATGTCAACGGT+GGG | 0.596788 | 4_4:-73315027 | Msa0701880:intron |
| TATGCAAGGTGATACTAGGA+AGG | 0.601134 | 4_4:-73314975 | Msa0701880:CDS |
| TGTCTTGTTACCTAATCTAG+TGG | 0.613356 | 4_4:-73313865 | Msa0701880:CDS |
| AATCATGGGTAAACCAAGTG+AGG | 0.622332 | 4_4:-73313633 | Msa0701880:CDS |
| TGGGTTAATGAACAAAGTAG+AGG | 0.626934 | 4_4:-73316033 | Msa0701880:CDS |
| TTAAAACTTACGATATACTC+AGG | 0.630698 | 4_4:+73314823 | None:intergenic |
| GAGGCATGTGTTGCTATGCA+AGG | 0.634228 | 4_4:-73314989 | Msa0701880:CDS |
| AAGGCGGTGTCAATCAAATG+TGG | 0.639055 | 4_4:-73315858 | Msa0701880:CDS |
| GATTGACAGTGCAATGTCAA+CGG | 0.649288 | 4_4:-73315031 | Msa0701880:intron |
| CCAAGTGAGGAAGATAGTTG+GGG | 0.664741 | 4_4:-73313620 | Msa0701880:CDS |
| ATGCAAGGTGATACTAGGAA+GGG | 0.665756 | 4_4:-73314974 | Msa0701880:CDS |
| GTGATCACTGATAAATCCAG+TGG | 0.668876 | 4_4:-73313580 | Msa0701880:CDS |
| GCGGTGTCAATCAAATGTGG+AGG | 0.676525 | 4_4:-73315855 | Msa0701880:CDS |
| AGTTGCAGGCAATATGACAC+AGG | 0.697404 | 4_4:-73314913 | Msa0701880:CDS |
| TGACAGTGCAATGTCAACGG+TGG | 0.725099 | 4_4:-73315028 | Msa0701880:intron |
| GATGATGATGATGAGTCTCA+CGG | 0.741144 | 4_4:-73315738 | Msa0701880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAAAAATAAAATAA+AGG | + | chr4_4:73314885-73314904 | None:intergenic | 0.0% |
| !! | TAAAAAAATAAAATAAAGGT+GGG | + | chr4_4:73314881-73314900 | None:intergenic | 10.0% |
| !! | ATAAAAAAATAAAATAAAGG+TGG | + | chr4_4:73314882-73314901 | None:intergenic | 10.0% |
| !! | AATATAACAAAAATTTAATG+TGG | + | chr4_4:73314988-73315007 | None:intergenic | 10.0% |
| !!! | ATTAAGAAAGGTTTTTTAAA+GGG | - | chr4_4:73313636-73313655 | Msa0701880:CDS | 15.0% |
| !! | ATTTGATCATATTATTTATG+AGG | + | chr4_4:73314208-73314227 | None:intergenic | 15.0% |
| !! | TAAGAAAATTACTAAGAATT+TGG | - | chr4_4:73314563-73314582 | Msa0701880:intron | 15.0% |
| !!! | AATTGATTTTATCTGAATTT+AGG | - | chr4_4:73315137-73315156 | Msa0701880:intron | 15.0% |
| !!! | ATTGATTTTATCTGAATTTA+GGG | - | chr4_4:73315138-73315157 | Msa0701880:intron | 15.0% |
| !! | TCATCAATTGAAAAATAAAT+TGG | + | chr4_4:73315541-73315560 | None:intergenic | 15.0% |
| !! | TTATAAAAACATTGTTTACT+TGG | + | chr4_4:73315848-73315867 | None:intergenic | 15.0% |
| !! | TGATTAAAACTAAATTATGT+TGG | - | chr4_4:73315941-73315960 | Msa0701880:CDS | 15.0% |
| !! | GATTAAAACTAAATTATGTT+GGG | - | chr4_4:73315942-73315961 | Msa0701880:CDS | 15.0% |
| !! | ATTAAAACTAAATTATGTTG+GGG | - | chr4_4:73315943-73315962 | Msa0701880:CDS | 15.0% |
| !! | GAATATCAATTCATTAAGAA+AGG | - | chr4_4:73313624-73313643 | Msa0701880:CDS | 20.0% |
| !!! | CATTAAGAAAGGTTTTTTAA+AGG | - | chr4_4:73313635-73313654 | Msa0701880:CDS | 20.0% |
| !! | ATTGTAGAATTGATTATTAG+AGG | + | chr4_4:73314283-73314302 | None:intergenic | 20.0% |
| !! | TATATCTTTATATGGATCAA+TGG | - | chr4_4:73314433-73314452 | Msa0701880:intron | 20.0% |
| !!! | TTTTAAGTATAACTATGTGA+AGG | - | chr4_4:73314817-73314836 | Msa0701880:CDS | 20.0% |
| !! | TTTAAGTATAACTATGTGAA+GGG | - | chr4_4:73314818-73314837 | Msa0701880:CDS | 20.0% |
| !!! | CATAACAAGGTTTTAAATTA+CGG | + | chr4_4:73315032-73315051 | None:intergenic | 20.0% |
| !! | TTGAAATTACAATAGATTGT+GGG | + | chr4_4:73315211-73315230 | None:intergenic | 20.0% |
| !!! | TTTGAAATTACAATAGATTG+TGG | + | chr4_4:73315212-73315231 | None:intergenic | 20.0% |
| !!! | AACGAAACATTTTAACATAA+GGG | + | chr4_4:73315271-73315290 | None:intergenic | 20.0% |
| !!! | TAACGAAACATTTTAACATA+AGG | + | chr4_4:73315272-73315291 | None:intergenic | 20.0% |
| !!! | ACATTAACTCTTTTCATATA+GGG | + | chr4_4:73315371-73315390 | None:intergenic | 20.0% |
| !! | TTATTAGTTATTACACATTC+AGG | - | chr4_4:73315497-73315516 | Msa0701880:intron | 20.0% |
| !!! | TACTAACCATATATTGATTT+TGG | - | chr4_4:73315690-73315709 | Msa0701880:intron | 20.0% |
| !! | TTTATAATTGCTATGCTTTA+AGG | - | chr4_4:73315861-73315880 | Msa0701880:CDS | 20.0% |
| !!! | AAAGGTTTTTTAAAGGGTAT+GGG | - | chr4_4:73313642-73313661 | Msa0701880:CDS | 25.0% |
| !! | TTCATTTCACATTTTCTCTA+AGG | - | chr4_4:73313746-73313765 | Msa0701880:intron | 25.0% |
| ! | ATAAACTACTTACCTATCAA+TGG | + | chr4_4:73313943-73313962 | None:intergenic | 25.0% |
| ! | AGGTAAGTAGTTTATATACA+TGG | - | chr4_4:73313948-73313967 | Msa0701880:intron | 25.0% |
| ! | AGTCATAATATGATTGTAGT+TGG | - | chr4_4:73313983-73314002 | Msa0701880:intron | 25.0% |
| !! | ATTTTCATGAATCATGAACT+AGG | - | chr4_4:73314158-73314177 | Msa0701880:intron | 25.0% |
| !!! | ATGAACTAGGTTTTGATTAA+AGG | - | chr4_4:73314171-73314190 | Msa0701880:intron | 25.0% |
| ! | TATTATTTATGAGGAAGAGA+TGG | + | chr4_4:73314199-73314218 | None:intergenic | 25.0% |
| ! | AAGGATGCAAATATATACAA+GGG | + | chr4_4:73314361-73314380 | None:intergenic | 25.0% |
| ! | AAAGGATGCAAATATATACA+AGG | + | chr4_4:73314362-73314381 | None:intergenic | 25.0% |
| !! | CTTTTATCAATGACTATTCA+GGG | - | chr4_4:73314378-73314397 | Msa0701880:intron | 25.0% |
| ! | TATCATAAACAAAAAGTTCG+TGG | + | chr4_4:73314516-73314535 | None:intergenic | 25.0% |
| ! | GATAACAATTTGTATACCAA+CGG | - | chr4_4:73314532-73314551 | Msa0701880:intron | 25.0% |
| ! | CACCTAGAAAACATATTATA+TGG | - | chr4_4:73314750-73314769 | Msa0701880:intron | 25.0% |
| !! | GTCCATATAATATGTTTTCT+AGG | + | chr4_4:73314755-73314774 | None:intergenic | 25.0% |
| ! | TTAAAACTTACGATATACTC+AGG | + | chr4_4:73314803-73314822 | None:intergenic | 25.0% |
| !! | TACTAAATGTCAAGGTTTTT+GGG | - | chr4_4:73314940-73314959 | Msa0701880:CDS | 25.0% |
| ! | ACTAAGAAATGTTCATAACA+AGG | + | chr4_4:73315045-73315064 | None:intergenic | 25.0% |
| ! | AATCAATTTCATTAAACGAC+TGG | + | chr4_4:73315125-73315144 | None:intergenic | 25.0% |
| ! | TCCTTGAATGTTTAATTAGT+AGG | - | chr4_4:73315176-73315195 | Msa0701880:intron | 25.0% |
| ! | GAATAACATAATGCAAATCA+AGG | + | chr4_4:73315240-73315259 | None:intergenic | 25.0% |
| !! | GACATTAACTCTTTTCATAT+AGG | + | chr4_4:73315372-73315391 | None:intergenic | 25.0% |
| ! | AAGCATTTGATACAAATATC+AGG | + | chr4_4:73315654-73315673 | None:intergenic | 25.0% |
| ! | TCTGTTCCAAAATCAATATA+TGG | + | chr4_4:73315699-73315718 | None:intergenic | 25.0% |
| ! | TAACAAGACATATTCTGATT+GGG | + | chr4_4:73315748-73315767 | None:intergenic | 25.0% |
| !! | TGCTTTGTTACTTAAATTTG+CGG | - | chr4_4:73315911-73315930 | Msa0701880:CDS | 25.0% |
| ! | AAAAGATTACAAGAGAATCA+TGG | - | chr4_4:73315975-73315994 | Msa0701880:CDS | 25.0% |
| ! | AAAGATTACAAGAGAATCAT+GGG | - | chr4_4:73315976-73315995 | Msa0701880:CDS | 25.0% |
| !! | TTGCAAGTCATTTTCTCAAT+TGG | + | chr4_4:73313570-73313589 | None:intergenic | 30.0% |
| ! | ATTGAGAAAATGACTTGCAA+TGG | - | chr4_4:73313570-73313589 | Msa0701880:CDS | 30.0% |
| ! | TTGAGAAAATGACTTGCAAT+GGG | - | chr4_4:73313571-73313590 | Msa0701880:CDS | 30.0% |
| !!! | GAAAGGTTTTTTAAAGGGTA+TGG | - | chr4_4:73313641-73313660 | Msa0701880:CDS | 30.0% |
| ! | TTTAAAGGGTATGGGATTTA+TGG | - | chr4_4:73313650-73313669 | Msa0701880:CDS | 30.0% |
| !! | ATTTCACATTTTCTCTAAGG+CGG | - | chr4_4:73313749-73313768 | Msa0701880:intron | 30.0% |
| CTCATAGATATTGTATCATC+TGG | - | chr4_4:73313837-73313856 | Msa0701880:CDS | 30.0% | |
| TGTTGGAATTTCGTTATCAT+CGG | - | chr4_4:73313908-73313927 | Msa0701880:CDS | 30.0% | |
| CCTGAATAGTCATTGATAAA+AGG | + | chr4_4:73314380-73314399 | None:intergenic | 30.0% | |
| ! | CCTTTTATCAATGACTATTC+AGG | - | chr4_4:73314377-73314396 | Msa0701880:intron | 30.0% |
| TTGCTCGCTATATCTTTATA+TGG | - | chr4_4:73314425-73314444 | Msa0701880:intron | 30.0% | |
| ! | TTTTCTTAGAAATCATCCGT+TGG | + | chr4_4:73314551-73314570 | None:intergenic | 30.0% |
| TTCAATTTCACCATCATAGT+TGG | - | chr4_4:73314917-73314936 | Msa0701880:CDS | 30.0% | |
| ACATTTAGTACCAACTATGA+TGG | + | chr4_4:73314930-73314949 | None:intergenic | 30.0% | |
| ! | ATAGTTGGTACTAAATGTCA+AGG | - | chr4_4:73314932-73314951 | Msa0701880:CDS | 30.0% |
| ! | GTACTAAATGTCAAGGTTTT+TGG | - | chr4_4:73314939-73314958 | Msa0701880:CDS | 30.0% |
| GTTATGAACATTTCTTAGTC+AGG | - | chr4_4:73315046-73315065 | Msa0701880:intron | 30.0% | |
| GCCTACTAATTAAACATTCA+AGG | + | chr4_4:73315180-73315199 | None:intergenic | 30.0% | |
| ATAAGTACTTACTGTCATCT+CGG | - | chr4_4:73315344-73315363 | Msa0701880:intron | 30.0% | |
| ! | TACAAATATCAGGTTGTGAA+GGG | + | chr4_4:73315644-73315663 | None:intergenic | 30.0% |
| ! | ATACAAATATCAGGTTGTGA+AGG | + | chr4_4:73315645-73315664 | None:intergenic | 30.0% |
| AACAAGACATATTCTGATTG+GGG | + | chr4_4:73315747-73315766 | None:intergenic | 30.0% | |
| GTAACAAGACATATTCTGAT+TGG | + | chr4_4:73315749-73315768 | None:intergenic | 30.0% | |
| CATTGTTTACTTGGTAGATA+CGG | + | chr4_4:73315839-73315858 | None:intergenic | 30.0% | |
| TGGGTTAATGAACAAAGTAG+AGG | - | chr4_4:73313590-73313609 | Msa0701880:CDS | 35.0% | |
| GGAAACGTTGTTCTTATGAA+TGG | + | chr4_4:73313697-73313716 | None:intergenic | 35.0% | |
| ! | AGCTTGCTTTGTCAAATTAG+AGG | + | chr4_4:73313718-73313737 | None:intergenic | 35.0% |
| ATTGTATCATCTGGATTCAC+TGG | - | chr4_4:73313846-73313865 | Msa0701880:CDS | 35.0% | |
| ! | CGGCTAATTTTTCCATTGAT+AGG | - | chr4_4:73313928-73313947 | Msa0701880:intron | 35.0% |
| ! | TCTCATTGATTGTTACACGT+AGG | - | chr4_4:73314234-73314253 | Msa0701880:intron | 35.0% |
| TGCAAATATATACAAGGGCA+AGG | + | chr4_4:73314356-73314375 | None:intergenic | 35.0% | |
| AAGAGTTAATGTCACTATCG+AGG | - | chr4_4:73315379-73315398 | Msa0701880:intron | 35.0% | |
| AGAGTTAATGTCACTATCGA+GGG | - | chr4_4:73315380-73315399 | Msa0701880:intron | 35.0% | |
| !!! | ATTGATTTTGGAACAGATCC+AGG | - | chr4_4:73315702-73315721 | Msa0701880:CDS | 35.0% |
| ! | TGTCTTGTTACCTAATCTAG+TGG | - | chr4_4:73315758-73315777 | Msa0701880:CDS | 35.0% |
| AGTAACAGAGACATTTGTGA+TGG | + | chr4_4:73315807-73315826 | None:intergenic | 35.0% | |
| ACTAAATTATGTTGGGGATC+AGG | - | chr4_4:73315949-73315968 | Msa0701880:CDS | 35.0% | |
| AACAAAGTAGAGGAAGAGAG+TGG | - | chr4_4:73313600-73313619 | Msa0701880:CDS | 40.0% | |
| ! | AAAGGGTATGGGATTTATGG+TGG | - | chr4_4:73313653-73313672 | Msa0701880:CDS | 40.0% |
| TTTGACAAAGCAAGCTCGTT+TGG | - | chr4_4:73313722-73313741 | Msa0701880:intron | 40.0% | |
| GTGGAGGTAATGCTAATGTT+AGG | - | chr4_4:73313784-73313803 | Msa0701880:intron | 40.0% | |
| ATGCTAATGTTAGGTGTGCT+TGG | - | chr4_4:73313793-73313812 | Msa0701880:intron | 40.0% | |
| AATGTTAGGTGTGCTTGGTA+TGG | - | chr4_4:73313798-73313817 | Msa0701880:CDS | 40.0% | |
| ! | GATGATGATGATGAGTCTCA+CGG | - | chr4_4:73313885-73313904 | Msa0701880:CDS | 40.0% |
| ATATATACAAGGGCAAGGCA+AGG | + | chr4_4:73314351-73314370 | None:intergenic | 40.0% | |
| GATTGACAGTGCAATGTCAA+CGG | - | chr4_4:73314592-73314611 | Msa0701880:intron | 40.0% | |
| TTGCTATGCAAGGTGATACT+AGG | - | chr4_4:73314644-73314663 | Msa0701880:intron | 40.0% | |
| TATGCAAGGTGATACTAGGA+AGG | - | chr4_4:73314648-73314667 | Msa0701880:intron | 40.0% | |
| ATGCAAGGTGATACTAGGAA+GGG | - | chr4_4:73314649-73314668 | Msa0701880:intron | 40.0% | |
| !! | TGGCTCTGTTTTGAATCAAC+AGG | + | chr4_4:73314686-73314705 | None:intergenic | 40.0% |
| ACTAACAACGTGCACACAAT+CGG | - | chr4_4:73315430-73315449 | Msa0701880:intron | 40.0% | |
| GAACAGATCCAGGTGTATTT+GGG | - | chr4_4:73315712-73315731 | Msa0701880:CDS | 40.0% | |
| TTTAGTGTCCCAAATACACC+TGG | + | chr4_4:73315723-73315742 | None:intergenic | 40.0% | |
| ! | GAAACTTGTGCCACTAGATT+AGG | + | chr4_4:73315771-73315790 | None:intergenic | 40.0% |
| AATCATGGGTAAACCAAGTG+AGG | - | chr4_4:73315990-73316009 | Msa0701880:CDS | 40.0% | |
| AACCAAGTGAGGAAGATAGT+TGG | - | chr4_4:73316001-73316020 | Msa0701880:CDS | 40.0% | |
| ACCAAGTGAGGAAGATAGTT+GGG | - | chr4_4:73316002-73316021 | Msa0701880:CDS | 40.0% | |
| GTGATCACTGATAAATCCAG+TGG | - | chr4_4:73316043-73316062 | Msa0701880:CDS | 40.0% | |
| ! | AAGGCGGTGTCAATCAAATG+TGG | - | chr4_4:73313765-73313784 | Msa0701880:intron | 45.0% |
| TGGGAGATGAGAATGGTTTG+AGG | - | chr4_4:73314615-73314634 | Msa0701880:intron | 45.0% | |
| CATATTGCCTGCAACTAGGT+TGG | + | chr4_4:73314706-73314725 | None:intergenic | 45.0% | |
| GTGTCATATTGCCTGCAACT+AGG | + | chr4_4:73314710-73314729 | None:intergenic | 45.0% | |
| AGTTGCAGGCAATATGACAC+AGG | - | chr4_4:73314710-73314729 | Msa0701880:intron | 45.0% | |
| !!! | TGTCAAGGTTTTTGGGTGCA+AGG | - | chr4_4:73314947-73314966 | Msa0701880:CDS | 45.0% |
| GTGCAAGGCAATTGCAATTG+AGG | - | chr4_4:73314962-73314981 | Msa0701880:CDS | 45.0% | |
| CTAACAACGTGCACACAATC+GGG | - | chr4_4:73315431-73315450 | Msa0701880:intron | 45.0% | |
| TCCTATGATGACCGTCTTAG+TGG | - | chr4_4:73315613-73315632 | Msa0701880:intron | 45.0% | |
| ! | ATATCAGGTTGTGAAGGGCA+AGG | + | chr4_4:73315639-73315658 | None:intergenic | 45.0% |
| GGAACAGATCCAGGTGTATT+TGG | - | chr4_4:73315711-73315730 | Msa0701880:CDS | 45.0% | |
| CCAAGTGAGGAAGATAGTTG+GGG | - | chr4_4:73316003-73316022 | Msa0701880:CDS | 45.0% | |
| !!! | ATTTTATTAAAATGTTAATA+TGG | + | chr4_4:73315074-73315093 | None:intergenic | 5.0% |
| ! | GCGGTGTCAATCAAATGTGG+AGG | - | chr4_4:73313768-73313787 | Msa0701880:intron | 50.0% |
| GTTAGGTGTGCTTGGTATGG+TGG | - | chr4_4:73313801-73313820 | Msa0701880:CDS | 50.0% | |
| GATGATGAGTCTCACGGTGT+TGG | - | chr4_4:73313891-73313910 | Msa0701880:CDS | 50.0% | |
| TGACAGTGCAATGTCAACGG+TGG | - | chr4_4:73314595-73314614 | Msa0701880:intron | 50.0% | |
| GACAGTGCAATGTCAACGGT+GGG | - | chr4_4:73314596-73314615 | Msa0701880:intron | 50.0% | |
| TCAACGGTGGGAGATGAGAA+TGG | - | chr4_4:73314608-73314627 | Msa0701880:intron | 50.0% | |
| ! | GAGGCATGTGTTGCTATGCA+AGG | - | chr4_4:73314634-73314653 | Msa0701880:intron | 50.0% |
| AACAGAGCCAACCTAGTTGC+AGG | - | chr4_4:73314696-73314715 | Msa0701880:intron | 50.0% | |
| GCCACTAAGACGGTCATCAT+AGG | + | chr4_4:73315617-73315636 | None:intergenic | 50.0% | |
| CCCCAACTATCTTCCTCACT+TGG | + | chr4_4:73316006-73316025 | None:intergenic | 50.0% | |
| AAGAGGATGCACATAGCCAC+TGG | + | chr4_4:73316062-73316081 | None:intergenic | 50.0% | |
| TACAAGGGCAAGGCAAGGCA+AGG | + | chr4_4:73314346-73314365 | None:intergenic | 55.0% | |
| GAAGGGCAAGGCCACTAAGA+CGG | + | chr4_4:73315627-73315646 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 73313561 | 73316084 | 73313561 | ID=Msa0701880;Name=Msa0701880 |
| chr4_4 | mRNA | 73313561 | 73316084 | 73313561 | ID=Msa0701880-mRNA-1;Parent=Msa0701880;Name=Msa0701880-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0.66|0|1|1|1|4|0|290 |
| chr4_4 | exon | 73315696 | 73316084 | 73315696 | ID=Msa0701880-mRNA-1:exon:22560;Parent=Msa0701880-mRNA-1 |
| chr4_4 | exon | 73314806 | 73315044 | 73314806 | ID=Msa0701880-mRNA-1:exon:22559;Parent=Msa0701880-mRNA-1 |
| chr4_4 | exon | 73313797 | 73313927 | 73313797 | ID=Msa0701880-mRNA-1:exon:22558;Parent=Msa0701880-mRNA-1 |
| chr4_4 | exon | 73313561 | 73313674 | 73313561 | ID=Msa0701880-mRNA-1:exon:22557;Parent=Msa0701880-mRNA-1 |
| chr4_4 | CDS | 73315696 | 73316084 | 73315696 | ID=Msa0701880-mRNA-1:cds;Parent=Msa0701880-mRNA-1 |
| chr4_4 | CDS | 73314806 | 73315044 | 73314806 | ID=Msa0701880-mRNA-1:cds;Parent=Msa0701880-mRNA-1 |
| chr4_4 | CDS | 73313797 | 73313927 | 73313797 | ID=Msa0701880-mRNA-1:cds;Parent=Msa0701880-mRNA-1 |
| chr4_4 | CDS | 73313561 | 73313674 | 73313561 | ID=Msa0701880-mRNA-1:cds;Parent=Msa0701880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
