Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532150 | XP_003629911.1 | 95.172 | 290 | 14 | 0 | 1 | 290 | 1 | 290 | 0.0 | 575 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532150 | sp|Q9ZUD9|SRO2_ARATH | 39.850 | 266 | 157 | 3 | 18 | 281 | 50 | 314 | 4.34e-62 | 202 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532150 | G7L830 | 95.172 | 290 | 14 | 0 | 1 | 290 | 1 | 290 | 0.0 | 575 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0051450 | Msa0532150 | 0.807757 | 4.325535e-50 | -8.615850e-47 |
| Msa0101830 | Msa0532150 | 0.803212 | 3.883165e-49 | -8.615850e-47 |
| Msa0438040 | Msa0532150 | 0.806529 | 7.869953e-50 | -8.615850e-47 |
| Msa0532040 | Msa0532150 | 0.930604 | 1.285267e-93 | -8.615850e-47 |
| Msa0532150 | Msa0701880 | 0.928864 | 1.577449e-92 | -8.615850e-47 |
| Msa0532150 | Msa1377080 | 0.803534 | 3.329902e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532150 | MtrunA17_Chr8g0380321 | 95.172 | 290 | 14 | 0 | 1 | 290 | 1 | 290 | 0.0 | 575 |
| Msa0532150 | MtrunA17_Chr3g0117631 | 38.760 | 258 | 146 | 4 | 23 | 279 | 60 | 306 | 2.71e-55 | 181 |
| Msa0532150 | MtrunA17_Chr4g0059061 | 35.740 | 277 | 162 | 5 | 19 | 290 | 43 | 308 | 7.30e-54 | 177 |
| Msa0532150 | MtrunA17_Chr1g0210871 | 31.271 | 291 | 155 | 9 | 26 | 279 | 277 | 559 | 1.75e-33 | 128 |
| Msa0532150 | MtrunA17_Chr5g0412301 | 28.328 | 293 | 162 | 6 | 26 | 279 | 270 | 553 | 2.08e-31 | 122 |
| Msa0532150 | MtrunA17_Chr5g0410781 | 32.418 | 182 | 112 | 5 | 26 | 204 | 66 | 239 | 5.99e-27 | 105 |
| Msa0532150 | MtrunA17_Chr7g0217951 | 34.807 | 181 | 107 | 5 | 27 | 204 | 254 | 426 | 7.99e-26 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532150 | AT1G23550.1 | 39.850 | 266 | 157 | 3 | 18 | 281 | 50 | 314 | 4.42e-63 | 202 |
| Msa0532150 | AT1G70440.2 | 38.060 | 268 | 161 | 3 | 16 | 282 | 40 | 303 | 3.37e-60 | 194 |
| Msa0532150 | AT1G70440.1 | 38.060 | 268 | 161 | 3 | 16 | 282 | 40 | 303 | 3.37e-60 | 194 |
| Msa0532150 | AT5G62520.1 | 33.577 | 274 | 163 | 8 | 11 | 279 | 41 | 300 | 1.89e-42 | 148 |
| Msa0532150 | AT3G47720.1 | 30.769 | 247 | 143 | 6 | 43 | 279 | 77 | 305 | 1.26e-30 | 117 |
| Msa0532150 | AT5G62520.2 | 34.500 | 200 | 119 | 6 | 11 | 207 | 41 | 231 | 3.41e-30 | 114 |
| Msa0532150 | AT1G32230.3 | 31.559 | 263 | 135 | 5 | 58 | 280 | 306 | 563 | 4.60e-30 | 119 |
| Msa0532150 | AT1G32230.6 | 31.559 | 263 | 135 | 5 | 58 | 280 | 306 | 563 | 5.41e-30 | 119 |
| Msa0532150 | AT1G32230.4 | 31.559 | 263 | 135 | 5 | 58 | 280 | 306 | 563 | 5.41e-30 | 119 |
| Msa0532150 | AT1G32230.2 | 31.559 | 263 | 135 | 5 | 58 | 280 | 306 | 563 | 5.41e-30 | 119 |
| Msa0532150 | AT1G32230.5 | 31.559 | 263 | 135 | 5 | 58 | 280 | 306 | 563 | 5.41e-30 | 119 |
| Msa0532150 | AT1G32230.1 | 31.439 | 264 | 135 | 5 | 58 | 280 | 306 | 564 | 7.86e-30 | 118 |
| Msa0532150 | AT2G35510.1 | 26.837 | 313 | 168 | 9 | 15 | 280 | 263 | 561 | 8.92e-22 | 95.5 |
| Msa0532150 | AT2G35510.3 | 26.837 | 313 | 168 | 9 | 15 | 280 | 263 | 561 | 8.92e-22 | 95.5 |
| Msa0532150 | AT2G35510.2 | 33.333 | 192 | 115 | 6 | 15 | 204 | 263 | 443 | 7.56e-21 | 92.4 |
Find 59 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAAAGGGTATGGGATTTA+TGG | 0.128492 | 4_1:-6145173 | Msa0532150:CDS |
| GGAACAGATCCAGGTGTATT+TGG | 0.158775 | 4_1:-6143063 | Msa0532150:intron |
| AGCTTGCTTTGTCAAATTAG+AGG | 0.285711 | 4_1:+6145108 | None:intergenic |
| CACCTAGAAAACATATTATA+TGG | 0.300865 | 4_1:-6144073 | Msa0532150:CDS |
| GAAACTTGTGCCACTAGATT+AGG | 0.336353 | 4_1:+6143006 | None:intergenic |
| TTTGACAAAGCAAGCTCGTT+TGG | 0.351330 | 4_1:-6145101 | Msa0532150:CDS |
| GAACAGATCCAGGTGTATTT+GGG | 0.359387 | 4_1:-6143062 | Msa0532150:intron |
| CTCATAGATATTGTATCATC+TGG | 0.369323 | 4_1:-6144986 | Msa0532150:CDS |
| TAACAAGACATATTCTGATT+GGG | 0.382519 | 4_1:+6143029 | None:intergenic |
| CCCCAACTATCTTCCTCACT+TGG | 0.386648 | 4_1:+6142767 | None:intergenic |
| ACCAAGTGAGGAAGATAGTT+GGG | 0.401844 | 4_1:-6142768 | Msa0532150:CDS |
| AACAGAGCCAACCTAGTTGC+AGG | 0.402138 | 4_1:-6144127 | Msa0532150:CDS |
| GAATATCAATTCATTAAGAA+AGG | 0.426175 | 4_1:-6145199 | Msa0532150:CDS |
| GGAAACGTTGTTCTTATGAA+TGG | 0.429255 | 4_1:+6145129 | None:intergenic |
| GTAACAAGACATATTCTGAT+TGG | 0.436441 | 4_1:+6143028 | None:intergenic |
| ATAAACTACTTACCTATCAA+TGG | 0.440863 | 4_1:+6144883 | None:intergenic |
| ATTGTATCATCTGGATTCAC+TGG | 0.458602 | 4_1:-6144977 | Msa0532150:CDS |
| GTTCCAAAATTGAACTAAAG+AGG | 0.463519 | 4_1:+6142694 | None:intergenic |
| ATTGAGAAAATGACTTGCAA+TGG | 0.465836 | 4_1:-6145253 | Msa0532150:CDS |
| AAAAGATTACAAGAGAATCA+TGG | 0.467073 | 4_1:-6142795 | Msa0532150:CDS |
| TTGAGAAAATGACTTGCAAT+GGG | 0.484339 | 4_1:-6145252 | Msa0532150:CDS |
| CATATTGCCTGCAACTAGGT+TGG | 0.513312 | 4_1:+6144120 | None:intergenic |
| AAAGATTACAAGAGAATCAT+GGG | 0.522819 | 4_1:-6142794 | Msa0532150:CDS |
| TGTTGGAATTTCGTTATCAT+CGG | 0.530134 | 4_1:-6144915 | Msa0532150:CDS |
| TTGCTATGCAAGGTGATACT+AGG | 0.531298 | 4_1:-6144179 | Msa0532150:CDS |
| AAAGGGTATGGGATTTATGG+TGG | 0.531665 | 4_1:-6145170 | Msa0532150:CDS |
| AACCAAGTGAGGAAGATAGT+TGG | 0.532207 | 4_1:-6142769 | Msa0532150:CDS |
| AATGTTAGGTGTGCTTGGTA+TGG | 0.533854 | 4_1:-6145025 | Msa0532150:CDS |
| TTTAAGTATAACTATGTGAA+GGG | 0.544236 | 4_1:-6144005 | Msa0532150:intron |
| ATGCTAATGTTAGGTGTGCT+TGG | 0.544874 | 4_1:-6145030 | Msa0532150:CDS |
| GTTTACTTACTTGGTAGATA+CGG | 0.547975 | 4_1:+6142938 | None:intergenic |
| GTGTCATATTGCCTGCAACT+AGG | 0.549854 | 4_1:+6144116 | None:intergenic |
| AACAAGACATATTCTGATTG+GGG | 0.553733 | 4_1:+6143030 | None:intergenic |
| GTGGAGGTAATGCTAATGTT+AGG | 0.556638 | 4_1:-6145039 | Msa0532150:CDS |
| AACAAAGTAGAGGAAGAGAG+TGG | 0.559058 | 4_1:-6145223 | Msa0532150:CDS |
| GTTAGGTGTGCTTGGTATGG+TGG | 0.562625 | 4_1:-6145022 | Msa0532150:CDS |
| TCAACGGTGGGAGATGAGAA+TGG | 0.565464 | 4_1:-6144215 | Msa0532150:CDS |
| AAGAGGATGCACATAGCCAC+TGG | 0.569354 | 4_1:+6142711 | None:intergenic |
| TGGGAGATGAGAATGGTTTG+AGG | 0.575457 | 4_1:-6144208 | Msa0532150:CDS |
| AGTAACAGAGACATTTGTGA+TGG | 0.589593 | 4_1:+6142970 | None:intergenic |
| TTTAGTGTCCCAAATACACC+TGG | 0.594133 | 4_1:+6143054 | None:intergenic |
| GATGATGAGTCTCACGGTGT+TGG | 0.594179 | 4_1:-6144932 | Msa0532150:CDS |
| TATGCAAGGTGATACTAGGA+AGG | 0.601134 | 4_1:-6144175 | Msa0532150:CDS |
| GACAGTGCAATGTCAACGGT+GGG | 0.604803 | 4_1:-6144227 | Msa0532150:intron |
| TGTCTTGTTACCTAATCTAG+TGG | 0.613356 | 4_1:-6143016 | Msa0532150:CDS |
| GATCGACAGTGCAATGTCAA+CGG | 0.619344 | 4_1:-6144231 | Msa0532150:intron |
| AATCATGGGTAAACCAAGTG+AGG | 0.622332 | 4_1:-6142780 | Msa0532150:CDS |
| TGGATGCAATATTCATGTAG+AGG | 0.624432 | 4_1:-6144957 | Msa0532150:CDS |
| TGGGTTAATGAACAAAGTAG+AGG | 0.626934 | 4_1:-6145233 | Msa0532150:CDS |
| TTAAAACTTACGATATACTC+AGG | 0.630698 | 4_1:+6144023 | None:intergenic |
| GAGGCATGTGTTGCTATGCA+AGG | 0.634228 | 4_1:-6144189 | Msa0532150:CDS |
| AAGGCGGTGTCAATCAAATG+TGG | 0.639055 | 4_1:-6145058 | Msa0532150:CDS |
| CGACAGTGCAATGTCAACGG+TGG | 0.649224 | 4_1:-6144228 | Msa0532150:intron |
| CCAAGTGAGGAAGATAGTTG+GGG | 0.664741 | 4_1:-6142767 | Msa0532150:CDS |
| ATGCAAGGTGATACTAGGAA+GGG | 0.665756 | 4_1:-6144174 | Msa0532150:CDS |
| GTGATCACTGATAAATCCAG+TGG | 0.668876 | 4_1:-6142727 | Msa0532150:CDS |
| GCGGTGTCAATCAAATGTGG+AGG | 0.676525 | 4_1:-6145055 | Msa0532150:CDS |
| AGTTGCAGGCAATATGACAC+AGG | 0.697404 | 4_1:-6144113 | Msa0532150:CDS |
| GAGGATGATGATGAGTCTCA+CGG | 0.720276 | 4_1:-6144938 | Msa0532150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAAAAATAAAATAA+AGG | + | chr4_1:6144032-6144051 | None:intergenic | 0.0% |
| !! | TAAAAAAATAAAATAAAGGT+GGG | + | chr4_1:6144028-6144047 | None:intergenic | 10.0% |
| !! | ATAAAAAAATAAAATAAAGG+TGG | + | chr4_1:6144029-6144048 | None:intergenic | 10.0% |
| !! | AATATAACAAAAATTTAATG+TGG | + | chr4_1:6144134-6144153 | None:intergenic | 10.0% |
| !!! | ATTAAGAAAGGTTTTTTAAA+GGG | - | chr4_1:6142783-6142802 | Msa0532150:CDS | 15.0% |
| !! | ATTTGATCATATTATTTATG+AGG | + | chr4_1:6143355-6143374 | None:intergenic | 15.0% |
| !! | TAAGAAAATTACTAAGAATT+TGG | - | chr4_1:6143710-6143729 | Msa0532150:intron | 15.0% |
| !!! | AATTGATTTTATCTGAATTT+AGG | - | chr4_1:6144283-6144302 | Msa0532150:intron | 15.0% |
| !!! | ATTGATTTTATCTGAATTTA+GGG | - | chr4_1:6144284-6144303 | Msa0532150:intron | 15.0% |
| !!! | AACGAAATATTTTAACATAA+GGG | + | chr4_1:6144417-6144436 | None:intergenic | 15.0% |
| !!! | TAACGAAATATTTTAACATA+AGG | + | chr4_1:6144418-6144437 | None:intergenic | 15.0% |
| !! | TCATCAATTGAAAAATAAAT+TGG | + | chr4_1:6144687-6144706 | None:intergenic | 15.0% |
| !! | TGATTAAAACTAAATTATGT+TGG | - | chr4_1:6145141-6145160 | Msa0532150:CDS | 15.0% |
| !! | GATTAAAACTAAATTATGTT+GGG | - | chr4_1:6145142-6145161 | Msa0532150:CDS | 15.0% |
| !! | ATTAAAACTAAATTATGTTG+GGG | - | chr4_1:6145143-6145162 | Msa0532150:CDS | 15.0% |
| !! | GAATATCAATTCATTAAGAA+AGG | - | chr4_1:6142771-6142790 | Msa0532150:CDS | 20.0% |
| !!! | CATTAAGAAAGGTTTTTTAA+AGG | - | chr4_1:6142782-6142801 | Msa0532150:CDS | 20.0% |
| !! | ATTGTAGAATTGATTATTAG+AGG | + | chr4_1:6143430-6143449 | None:intergenic | 20.0% |
| !! | TATATCTTTATATGGATCAA+TGG | - | chr4_1:6143580-6143599 | Msa0532150:intron | 20.0% |
| !!! | TTTTAAGTATAACTATGTGA+AGG | - | chr4_1:6143964-6143983 | Msa0532150:intron | 20.0% |
| !! | TTTAAGTATAACTATGTGAA+GGG | - | chr4_1:6143965-6143984 | Msa0532150:intron | 20.0% |
| !!! | CATAACAAGGTTTTAAATTA+CGG | + | chr4_1:6144178-6144197 | None:intergenic | 20.0% |
| !! | TTGAAATTACAATAGATTGT+GGG | + | chr4_1:6144357-6144376 | None:intergenic | 20.0% |
| !!! | TTTGAAATTACAATAGATTG+TGG | + | chr4_1:6144358-6144377 | None:intergenic | 20.0% |
| !!! | ACATTAACTCTTTTCATATA+GGG | + | chr4_1:6144517-6144536 | None:intergenic | 20.0% |
| !! | TTATTAGTTATTACACATTC+AGG | - | chr4_1:6144643-6144662 | Msa0532150:intron | 20.0% |
| !!! | TACTAACCATATATTGATTT+TGG | - | chr4_1:6144886-6144905 | Msa0532150:intron | 20.0% |
| !! | AAAAACATTGTTTACTTACT+TGG | + | chr4_1:6145044-6145063 | None:intergenic | 20.0% |
| !! | TTTATAATTGCTATGCTTTA+AGG | - | chr4_1:6145061-6145080 | Msa0532150:CDS | 20.0% |
| !!! | AAAGGTTTTTTAAAGGGTAT+GGG | - | chr4_1:6142789-6142808 | Msa0532150:CDS | 25.0% |
| !! | TTCATTTCACATTTTCTCTA+AGG | - | chr4_1:6142893-6142912 | Msa0532150:intron | 25.0% |
| ! | ATAAACTACTTACCTATCAA+TGG | + | chr4_1:6143090-6143109 | None:intergenic | 25.0% |
| ! | AGGTAAGTAGTTTATATACA+TGG | - | chr4_1:6143095-6143114 | Msa0532150:intron | 25.0% |
| ! | AGTCATAATATGATTGTAGT+TGG | - | chr4_1:6143130-6143149 | Msa0532150:intron | 25.0% |
| !! | ATTTTCATGAATCATGAACT+AGG | - | chr4_1:6143305-6143324 | Msa0532150:intron | 25.0% |
| !!! | ATGAACTAGGTTTTGATTAA+AGG | - | chr4_1:6143318-6143337 | Msa0532150:intron | 25.0% |
| ! | TATTATTTATGAGGAAGAGA+TGG | + | chr4_1:6143346-6143365 | None:intergenic | 25.0% |
| ! | AAGGATGCAAATATATACAA+GGG | + | chr4_1:6143508-6143527 | None:intergenic | 25.0% |
| ! | AAAGGATGCAAATATATACA+AGG | + | chr4_1:6143509-6143528 | None:intergenic | 25.0% |
| !! | CTTTTATCAATGACTATTCA+GGG | - | chr4_1:6143525-6143544 | Msa0532150:intron | 25.0% |
| ! | CACCTAGAAAACATATTATA+TGG | - | chr4_1:6143897-6143916 | Msa0532150:intron | 25.0% |
| !! | GTCCATATAATATGTTTTCT+AGG | + | chr4_1:6143902-6143921 | None:intergenic | 25.0% |
| ! | TTAAAACTTACGATATACTC+AGG | + | chr4_1:6143950-6143969 | None:intergenic | 25.0% |
| !! | TACTAAATGTCAAGGTTTTT+GGG | - | chr4_1:6144086-6144105 | Msa0532150:CDS | 25.0% |
| ! | ACTAAGAAATGTTCATAACA+AGG | + | chr4_1:6144191-6144210 | None:intergenic | 25.0% |
| ! | AATCAATTTCATTAAACGAC+TGG | + | chr4_1:6144271-6144290 | None:intergenic | 25.0% |
| ! | TCCTTGAATGTTTAATTAGT+AGG | - | chr4_1:6144322-6144341 | Msa0532150:intron | 25.0% |
| ! | GAATAACATAATGCAAATCA+AGG | + | chr4_1:6144386-6144405 | None:intergenic | 25.0% |
| !! | GACATTAACTCTTTTCATAT+AGG | + | chr4_1:6144518-6144537 | None:intergenic | 25.0% |
| ! | AAGCATTTGATACAAATATC+AGG | + | chr4_1:6144850-6144869 | None:intergenic | 25.0% |
| ! | TCTGTTCCAAAATCAATATA+TGG | + | chr4_1:6144895-6144914 | None:intergenic | 25.0% |
| ! | TAACAAGACATATTCTGATT+GGG | + | chr4_1:6144944-6144963 | None:intergenic | 25.0% |
| !! | TGCTTTGTTACTTAAATTTG+CGG | - | chr4_1:6145111-6145130 | Msa0532150:CDS | 25.0% |
| ! | AAAAGATTACAAGAGAATCA+TGG | - | chr4_1:6145175-6145194 | Msa0532150:CDS | 25.0% |
| ! | AAAGATTACAAGAGAATCAT+GGG | - | chr4_1:6145176-6145195 | Msa0532150:CDS | 25.0% |
| !! | TTGCAAGTCATTTTCTCAAT+TGG | + | chr4_1:6142717-6142736 | None:intergenic | 30.0% |
| ! | ATTGAGAAAATGACTTGCAA+TGG | - | chr4_1:6142717-6142736 | Msa0532150:CDS | 30.0% |
| ! | TTGAGAAAATGACTTGCAAT+GGG | - | chr4_1:6142718-6142737 | Msa0532150:CDS | 30.0% |
| !!! | GAAAGGTTTTTTAAAGGGTA+TGG | - | chr4_1:6142788-6142807 | Msa0532150:CDS | 30.0% |
| ! | TTTAAAGGGTATGGGATTTA+TGG | - | chr4_1:6142797-6142816 | Msa0532150:CDS | 30.0% |
| !! | ATTTCACATTTTCTCTAAGG+CGG | - | chr4_1:6142896-6142915 | Msa0532150:intron | 30.0% |
| CTCATAGATATTGTATCATC+TGG | - | chr4_1:6142984-6143003 | Msa0532150:CDS | 30.0% | |
| TGTTGGAATTTCGTTATCAT+CGG | - | chr4_1:6143055-6143074 | Msa0532150:CDS | 30.0% | |
| CCTGAATAGTCATTGATAAA+AGG | + | chr4_1:6143527-6143546 | None:intergenic | 30.0% | |
| ! | CCTTTTATCAATGACTATTC+AGG | - | chr4_1:6143524-6143543 | Msa0532150:intron | 30.0% |
| TTGCTCGCTATATCTTTATA+TGG | - | chr4_1:6143572-6143591 | Msa0532150:intron | 30.0% | |
| GATAACAATTTGTATGCCAA+CGG | - | chr4_1:6143679-6143698 | Msa0532150:intron | 30.0% | |
| ! | TTTTCTTAGAAATCATCCGT+TGG | + | chr4_1:6143698-6143717 | None:intergenic | 30.0% |
| TTCAATTTCACCATCATAGT+TGG | - | chr4_1:6144063-6144082 | Msa0532150:CDS | 30.0% | |
| ACATTTAGTACCAACTATGA+TGG | + | chr4_1:6144076-6144095 | None:intergenic | 30.0% | |
| ! | ATAGTTGGTACTAAATGTCA+AGG | - | chr4_1:6144078-6144097 | Msa0532150:CDS | 30.0% |
| ! | GTACTAAATGTCAAGGTTTT+TGG | - | chr4_1:6144085-6144104 | Msa0532150:CDS | 30.0% |
| GTTATGAACATTTCTTAGTC+AGG | - | chr4_1:6144192-6144211 | Msa0532150:CDS | 30.0% | |
| GCCTACTAATTAAACATTCA+AGG | + | chr4_1:6144326-6144345 | None:intergenic | 30.0% | |
| ATAAGTACTTACTGTCATCT+CGG | - | chr4_1:6144490-6144509 | Msa0532150:intron | 30.0% | |
| ! | TACAAATATCAGGTTGTGAA+GGG | + | chr4_1:6144840-6144859 | None:intergenic | 30.0% |
| ! | ATACAAATATCAGGTTGTGA+AGG | + | chr4_1:6144841-6144860 | None:intergenic | 30.0% |
| AACAAGACATATTCTGATTG+GGG | + | chr4_1:6144943-6144962 | None:intergenic | 30.0% | |
| GTAACAAGACATATTCTGAT+TGG | + | chr4_1:6144945-6144964 | None:intergenic | 30.0% | |
| GTTTACTTACTTGGTAGATA+CGG | + | chr4_1:6145035-6145054 | None:intergenic | 30.0% | |
| TGGGTTAATGAACAAAGTAG+AGG | - | chr4_1:6142737-6142756 | Msa0532150:CDS | 35.0% | |
| GGAAACGTTGTTCTTATGAA+TGG | + | chr4_1:6142844-6142863 | None:intergenic | 35.0% | |
| ! | AGCTTGCTTTGTCAAATTAG+AGG | + | chr4_1:6142865-6142884 | None:intergenic | 35.0% |
| ATTGTATCATCTGGATTCAC+TGG | - | chr4_1:6142993-6143012 | Msa0532150:CDS | 35.0% | |
| TGGATGCAATATTCATGTAG+AGG | - | chr4_1:6143013-6143032 | Msa0532150:CDS | 35.0% | |
| ! | CGGCTAATTTTTCCATTGAT+AGG | - | chr4_1:6143075-6143094 | Msa0532150:intron | 35.0% |
| ! | TCTCATTGATTGTTACACGT+AGG | - | chr4_1:6143381-6143400 | Msa0532150:intron | 35.0% |
| TGCAAATATATACAAGGGCA+AGG | + | chr4_1:6143503-6143522 | None:intergenic | 35.0% | |
| AAGAGTTAATGTCACTATCG+AGG | - | chr4_1:6144525-6144544 | Msa0532150:intron | 35.0% | |
| AGAGTTAATGTCACTATCGA+GGG | - | chr4_1:6144526-6144545 | Msa0532150:intron | 35.0% | |
| ACTAACAACGTGCACATAAT+CGG | - | chr4_1:6144576-6144595 | Msa0532150:intron | 35.0% | |
| !!! | ATTGATTTTGGAACAGATCC+AGG | - | chr4_1:6144898-6144917 | Msa0532150:CDS | 35.0% |
| ! | TGTCTTGTTACCTAATCTAG+TGG | - | chr4_1:6144954-6144973 | Msa0532150:CDS | 35.0% |
| AGTAACAGAGACATTTGTGA+TGG | + | chr4_1:6145003-6145022 | None:intergenic | 35.0% | |
| ACTAAATTATGTTGGGGATC+AGG | - | chr4_1:6145149-6145168 | Msa0532150:CDS | 35.0% | |
| AACAAAGTAGAGGAAGAGAG+TGG | - | chr4_1:6142747-6142766 | Msa0532150:CDS | 40.0% | |
| ! | AAAGGGTATGGGATTTATGG+TGG | - | chr4_1:6142800-6142819 | Msa0532150:CDS | 40.0% |
| TTTGACAAAGCAAGCTCGTT+TGG | - | chr4_1:6142869-6142888 | Msa0532150:intron | 40.0% | |
| GTGGAGGTAATGCTAATGTT+AGG | - | chr4_1:6142931-6142950 | Msa0532150:intron | 40.0% | |
| ATGCTAATGTTAGGTGTGCT+TGG | - | chr4_1:6142940-6142959 | Msa0532150:intron | 40.0% | |
| AATGTTAGGTGTGCTTGGTA+TGG | - | chr4_1:6142945-6142964 | Msa0532150:intron | 40.0% | |
| ATATATACAAGGGCAAGGCA+AGG | + | chr4_1:6143498-6143517 | None:intergenic | 40.0% | |
| TTGCTATGCAAGGTGATACT+AGG | - | chr4_1:6143791-6143810 | Msa0532150:intron | 40.0% | |
| TATGCAAGGTGATACTAGGA+AGG | - | chr4_1:6143795-6143814 | Msa0532150:intron | 40.0% | |
| ATGCAAGGTGATACTAGGAA+GGG | - | chr4_1:6143796-6143815 | Msa0532150:intron | 40.0% | |
| !! | TGGCTCTGTTTTGAATCAAC+AGG | + | chr4_1:6143833-6143852 | None:intergenic | 40.0% |
| CTAACAACGTGCACATAATC+GGG | - | chr4_1:6144577-6144596 | Msa0532150:intron | 40.0% | |
| GAACAGATCCAGGTGTATTT+GGG | - | chr4_1:6144908-6144927 | Msa0532150:CDS | 40.0% | |
| TTTAGTGTCCCAAATACACC+TGG | + | chr4_1:6144919-6144938 | None:intergenic | 40.0% | |
| ! | GAAACTTGTGCCACTAGATT+AGG | + | chr4_1:6144967-6144986 | None:intergenic | 40.0% |
| AATCATGGGTAAACCAAGTG+AGG | - | chr4_1:6145190-6145209 | Msa0532150:CDS | 40.0% | |
| AACCAAGTGAGGAAGATAGT+TGG | - | chr4_1:6145201-6145220 | Msa0532150:CDS | 40.0% | |
| ACCAAGTGAGGAAGATAGTT+GGG | - | chr4_1:6145202-6145221 | Msa0532150:CDS | 40.0% | |
| GTGATCACTGATAAATCCAG+TGG | - | chr4_1:6145243-6145262 | Msa0532150:CDS | 40.0% | |
| ! | AAGGCGGTGTCAATCAAATG+TGG | - | chr4_1:6142912-6142931 | Msa0532150:intron | 45.0% |
| ! | GAGGATGATGATGAGTCTCA+CGG | - | chr4_1:6143032-6143051 | Msa0532150:CDS | 45.0% |
| GATCGACAGTGCAATGTCAA+CGG | - | chr4_1:6143739-6143758 | Msa0532150:intron | 45.0% | |
| TGGGAGATGAGAATGGTTTG+AGG | - | chr4_1:6143762-6143781 | Msa0532150:intron | 45.0% | |
| CATATTGCCTGCAACTAGGT+TGG | + | chr4_1:6143853-6143872 | None:intergenic | 45.0% | |
| GTGTCATATTGCCTGCAACT+AGG | + | chr4_1:6143857-6143876 | None:intergenic | 45.0% | |
| AGTTGCAGGCAATATGACAC+AGG | - | chr4_1:6143857-6143876 | Msa0532150:intron | 45.0% | |
| !!! | TGTCAAGGTTTTTGGGTGCA+AGG | - | chr4_1:6144093-6144112 | Msa0532150:CDS | 45.0% |
| GTGCAAGGCAATTGCAATTG+AGG | - | chr4_1:6144108-6144127 | Msa0532150:CDS | 45.0% | |
| TCCTATGATGACCGTCTTAG+TGG | - | chr4_1:6144809-6144828 | Msa0532150:intron | 45.0% | |
| ! | ATATCAGGTTGTGAAGGGCA+AGG | + | chr4_1:6144835-6144854 | None:intergenic | 45.0% |
| GGAACAGATCCAGGTGTATT+TGG | - | chr4_1:6144907-6144926 | Msa0532150:CDS | 45.0% | |
| CCAAGTGAGGAAGATAGTTG+GGG | - | chr4_1:6145203-6145222 | Msa0532150:CDS | 45.0% | |
| !!! | ATTTTATTAAAATGTTAATA+TGG | + | chr4_1:6144220-6144239 | None:intergenic | 5.0% |
| ! | GCGGTGTCAATCAAATGTGG+AGG | - | chr4_1:6142915-6142934 | Msa0532150:intron | 50.0% |
| GTTAGGTGTGCTTGGTATGG+TGG | - | chr4_1:6142948-6142967 | Msa0532150:CDS | 50.0% | |
| GATGATGAGTCTCACGGTGT+TGG | - | chr4_1:6143038-6143057 | Msa0532150:CDS | 50.0% | |
| GACAGTGCAATGTCAACGGT+GGG | - | chr4_1:6143743-6143762 | Msa0532150:intron | 50.0% | |
| TCAACGGTGGGAGATGAGAA+TGG | - | chr4_1:6143755-6143774 | Msa0532150:intron | 50.0% | |
| ! | GAGGCATGTGTTGCTATGCA+AGG | - | chr4_1:6143781-6143800 | Msa0532150:intron | 50.0% |
| AACAGAGCCAACCTAGTTGC+AGG | - | chr4_1:6143843-6143862 | Msa0532150:intron | 50.0% | |
| GCCACTAAGACGGTCATCAT+AGG | + | chr4_1:6144813-6144832 | None:intergenic | 50.0% | |
| CCCCAACTATCTTCCTCACT+TGG | + | chr4_1:6145206-6145225 | None:intergenic | 50.0% | |
| AAGAGGATGCACATAGCCAC+TGG | + | chr4_1:6145262-6145281 | None:intergenic | 50.0% | |
| TACAAGGGCAAGGCAAGGCA+AGG | + | chr4_1:6143493-6143512 | None:intergenic | 55.0% | |
| CGACAGTGCAATGTCAACGG+TGG | - | chr4_1:6143742-6143761 | Msa0532150:intron | 55.0% | |
| GAAGGGCAAGGCCACTAAGA+CGG | + | chr4_1:6144823-6144842 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 6142708 | 6145284 | 6142708 | ID=Msa0532150;Name=Msa0532150 |
| chr4_1 | mRNA | 6142708 | 6145284 | 6142708 | ID=Msa0532150-mRNA-1;Parent=Msa0532150;Name=Msa0532150-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0.66|0|1|1|1|4|0|290 |
| chr4_1 | exon | 6144896 | 6145284 | 6144896 | ID=Msa0532150-mRNA-1:exon:2215;Parent=Msa0532150-mRNA-1 |
| chr4_1 | exon | 6144006 | 6144244 | 6144006 | ID=Msa0532150-mRNA-1:exon:2214;Parent=Msa0532150-mRNA-1 |
| chr4_1 | exon | 6142948 | 6143078 | 6142948 | ID=Msa0532150-mRNA-1:exon:2213;Parent=Msa0532150-mRNA-1 |
| chr4_1 | exon | 6142708 | 6142821 | 6142708 | ID=Msa0532150-mRNA-1:exon:2212;Parent=Msa0532150-mRNA-1 |
| chr4_1 | CDS | 6144896 | 6145284 | 6144896 | ID=Msa0532150-mRNA-1:cds;Parent=Msa0532150-mRNA-1 |
| chr4_1 | CDS | 6144006 | 6144244 | 6144006 | ID=Msa0532150-mRNA-1:cds;Parent=Msa0532150-mRNA-1 |
| chr4_1 | CDS | 6142948 | 6143078 | 6142948 | ID=Msa0532150-mRNA-1:cds;Parent=Msa0532150-mRNA-1 |
| chr4_1 | CDS | 6142708 | 6142821 | 6142708 | ID=Msa0532150-mRNA-1:cds;Parent=Msa0532150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
