Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0533530 | XP_003604737.1 | 98.517 | 607 | 9 | 0 | 1 | 607 | 1 | 607 | 0.0 | 1242 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0533530 | sp|Q9M040|PDC4_ARATH | 83.031 | 607 | 99 | 2 | 1 | 607 | 1 | 603 | 0.0 | 1061 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0533530 | G7JQ58 | 98.517 | 607 | 9 | 0 | 1 | 607 | 1 | 607 | 0.0 | 1242 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0533530 | Msa0589790 | 0.903827 | 2.319128e-79 | -8.615850e-47 |
| Msa0533530 | Msa0630180 | 0.830736 | 2.482830e-55 | -8.615850e-47 |
| Msa0533530 | Msa0630200 | 0.821423 | 4.070853e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0533530 | MtrunA17_Chr4g0007071 | 98.517 | 607 | 9 | 0 | 1 | 607 | 1 | 607 | 0.0 | 1242 |
| Msa0533530 | MtrunA17_Chr5g0420011 | 98.353 | 607 | 10 | 0 | 1 | 607 | 1 | 607 | 0.0 | 1239 |
| Msa0533530 | MtrunA17_Chr7g0242961 | 85.997 | 607 | 81 | 3 | 1 | 607 | 1 | 603 | 0.0 | 1078 |
| Msa0533530 | MtrunA17_Chr7g0242981 | 82.730 | 608 | 85 | 4 | 1 | 607 | 1 | 589 | 0.0 | 1021 |
| Msa0533530 | MtrunA17_Chr2g0283471 | 79.094 | 574 | 120 | 0 | 34 | 607 | 9 | 582 | 0.0 | 962 |
| Msa0533530 | MtrunA17_Chr2g0279461 | 63.514 | 222 | 52 | 2 | 40 | 232 | 44 | 265 | 3.50e-97 | 298 |
| Msa0533530 | MtrunA17_Chr2g0279471 | 68.103 | 116 | 37 | 0 | 489 | 604 | 17 | 132 | 1.13e-52 | 176 |
| Msa0533530 | MtrunA17_Chr3g0132201 | 23.670 | 545 | 353 | 18 | 22 | 535 | 58 | 570 | 5.22e-22 | 100 |
| Msa0533530 | MtrunA17_Chr2g0290681 | 22.437 | 517 | 363 | 13 | 40 | 535 | 55 | 554 | 1.53e-18 | 89.7 |
| Msa0533530 | MtrunA17_Chr2g0281881 | 22.332 | 506 | 353 | 15 | 51 | 535 | 88 | 574 | 1.24e-16 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0533530 | AT5G01320.1 | 83.031 | 607 | 99 | 2 | 1 | 607 | 1 | 603 | 0.0 | 1061 |
| Msa0533530 | AT4G33070.1 | 82.102 | 609 | 105 | 4 | 1 | 607 | 1 | 607 | 0.0 | 1050 |
| Msa0533530 | AT5G54960.1 | 81.773 | 609 | 107 | 2 | 1 | 607 | 1 | 607 | 0.0 | 1046 |
| Msa0533530 | AT5G01330.1 | 82.799 | 593 | 98 | 3 | 17 | 607 | 2 | 592 | 0.0 | 1021 |
| Msa0533530 | AT5G17380.1 | 22.638 | 508 | 309 | 18 | 51 | 513 | 18 | 486 | 3.74e-17 | 85.5 |
| Msa0533530 | AT3G48560.1 | 21.875 | 512 | 348 | 14 | 51 | 535 | 103 | 589 | 4.72e-15 | 79.0 |
Find 161 sgRNAs with CRISPR-Local
Find 413 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGCCTAATTCTAATGATTT+TGG | 0.114847 | 4_1:+8560045 | Msa0533530:CDS |
| ATTAAGCTGAGATTACTTTA+AGG | 0.146349 | 4_1:+8563138 | Msa0533530:three_prime_UTR |
| AACATTTCATTGGAACGTTT+TGG | 0.238749 | 4_1:+8561543 | Msa0533530:CDS |
| TACTTTGGAGACAAGGAAAA+TGG | 0.246632 | 4_1:-8561233 | None:intergenic |
| CTGCTTATGAGAATTATTTC+AGG | 0.247181 | 4_1:+8561801 | Msa0533530:CDS |
| AAGCATAAGCAATCTTTCTT+TGG | 0.284489 | 4_1:-8562962 | None:intergenic |
| TCTGAAGTTCACTGAGGATT+TGG | 0.287893 | 4_1:-8563070 | None:intergenic |
| CTATTATTGTTCAGCCTGAT+AGG | 0.293661 | 4_1:+8561690 | Msa0533530:CDS |
| AGAATTCTTCATCATACTAT+TGG | 0.294152 | 4_1:+8560075 | Msa0533530:CDS |
| CATTGGCGATGGAAGTTTCC+AGG | 0.298159 | 4_1:+8562360 | Msa0533530:CDS |
| GTCCCAAAATCATTAGAATT+AGG | 0.303299 | 4_1:-8560048 | None:intergenic |
| CAAAAGATTAATTACCTTAG+TGG | 0.314883 | 4_1:-8562735 | None:intergenic |
| TGAAAATAGGTCCAGCAAAT+AGG | 0.336734 | 4_1:-8561619 | None:intergenic |
| GCTTTCGCTACTCTTAGTTT+TGG | 0.343206 | 4_1:-8561431 | None:intergenic |
| TGGTTATGCTCAAGCTGTTC+CGG | 0.343868 | 4_1:+8562318 | Msa0533530:CDS |
| ATTACTTACCCACATCCTTT+TGG | 0.345387 | 4_1:-8561980 | None:intergenic |
| CAGCTTATGCTTATGTAAAC+AGG | 0.355575 | 4_1:-8561164 | None:intergenic |
| GATTTCAAAGGCAAACCTTC+AGG | 0.356531 | 4_1:-8561833 | None:intergenic |
| TATGAGTTCCAGATGCAATA+TGG | 0.362998 | 4_1:+8562265 | Msa0533530:CDS |
| CAGATGCAATATGGTTCAAT+TGG | 0.366605 | 4_1:+8562274 | Msa0533530:CDS |
| GAGGATCACAAACATTTCAT+TGG | 0.372783 | 4_1:+8561533 | Msa0533530:CDS |
| AAGCAGTATTGTTCCTCTTA+AGG | 0.376245 | 4_1:-8561784 | None:intergenic |
| CAGTTCTTAATCACATTGTA+TGG | 0.381671 | 4_1:-8562659 | None:intergenic |
| ATCGGAAATGGTCCTACATT+TGG | 0.384015 | 4_1:+8561719 | Msa0533530:CDS |
| GAACTGTAATCATTGAAAAT+AGG | 0.384366 | 4_1:-8561632 | None:intergenic |
| TTTCCGATCACAACCCTATC+AGG | 0.392173 | 4_1:-8561704 | None:intergenic |
| CGCTCGCGAAGCGCCTTAAG+AGG | 0.395552 | 4_1:+8561771 | Msa0533530:CDS |
| GCTGATGCATACCTATTTGC+TGG | 0.395610 | 4_1:+8561608 | Msa0533530:CDS |
| GAAGCTAGGGATTGGGTTGA+AGG | 0.395680 | 4_1:-8559724 | None:intergenic |
| CTGATGGTTATGCAAGGTCT+AGG | 0.408121 | 4_1:+8559917 | Msa0533530:CDS |
| CTGAACCTAGAGAGCCTTTG+AGG | 0.417588 | 4_1:+8561855 | Msa0533530:CDS |
| TCAGCTTCGGTTCAGCGATC+AGG | 0.418349 | 4_1:-8559852 | None:intergenic |
| AGCGTGATTAATGCTATTGC+TGG | 0.421910 | 4_1:+8559982 | Msa0533530:CDS |
| CAATTGAACCATATTGCATC+TGG | 0.423310 | 4_1:-8562273 | None:intergenic |
| TCTGGAAACACCTAAGTTCC+TGG | 0.424227 | 4_1:-8560113 | None:intergenic |
| GGCTACTAGTACTGGTTTCA+CGG | 0.424604 | 4_1:-8561405 | None:intergenic |
| CAAGCAATCACTCGCTTCTC+CGG | 0.431538 | 4_1:-8562337 | None:intergenic |
| GCCGTGCTAGGTGGCTGCCT+AGG | 0.433379 | 4_1:-8559759 | None:intergenic |
| TAGCAAAGAGTTGCTTGAAT+GGG | 0.434683 | 4_1:+8563015 | Msa0533530:CDS |
| GAAGCAATTCAGACAGCAAC+AGG | 0.436338 | 4_1:+8562938 | Msa0533530:CDS |
| TCGGAAATGGTCCTACATTT+GGG | 0.436384 | 4_1:+8561720 | Msa0533530:CDS |
| TTCAGATGAAGCTAGGGATT+GGG | 0.437372 | 4_1:-8559731 | None:intergenic |
| AGTTGCTTGAATGGGGATCA+AGG | 0.443953 | 4_1:+8563023 | Msa0533530:CDS |
| CTGAAATTGCCAAAAGGATG+TGG | 0.445246 | 4_1:+8561971 | Msa0533530:CDS |
| GATAGGGTTGTGATCGGAAA+TGG | 0.449217 | 4_1:+8561707 | Msa0533530:CDS |
| TTCAATGATTACAGTTCTGT+TGG | 0.449416 | 4_1:+8561638 | Msa0533530:CDS |
| CTAGCAAAGAGTTGCTTGAA+TGG | 0.452164 | 4_1:+8563014 | Msa0533530:CDS |
| TGGTCTGTTGGTGCAACTCT+TGG | 0.454455 | 4_1:+8562298 | Msa0533530:CDS |
| TTGTGCCGAGATTGTGGAAT+CGG | 0.455522 | 4_1:+8561586 | Msa0533530:CDS |
| TGATGGTTATGCAAGGTCTA+GGG | 0.455953 | 4_1:+8559918 | Msa0533530:CDS |
| CTAAGTTCCTGGCTAAAATC+AGG | 0.456762 | 4_1:-8560102 | None:intergenic |
| TTACCAGTGATTTGTATTGT+TGG | 0.457463 | 4_1:+8560021 | Msa0533530:CDS |
| ATTCAGATGAAGCTAGGGAT+TGG | 0.458364 | 4_1:-8559732 | None:intergenic |
| ACTGCTGTTATTGCCGAGAC+AGG | 0.459219 | 4_1:+8561923 | Msa0533530:CDS |
| GGAGACAAGGAAAATGGAAC+AGG | 0.460250 | 4_1:-8561227 | None:intergenic |
| GGCAGCAGTGGAAGCAGCTG+CGG | 0.462599 | 4_1:+8561367 | Msa0533530:CDS |
| CCAGACTGTTACTTGCTACC+AGG | 0.464384 | 4_1:+8560131 | Msa0533530:CDS |
| CCGTGCTAGGTGGCTGCCTA+GGG | 0.470674 | 4_1:-8559758 | None:intergenic |
| GAACTGGAATTACACTGGCT+TGG | 0.471453 | 4_1:+8562676 | Msa0533530:CDS |
| CATTGAGGTGATTGTTCACA+AGG | 0.471803 | 4_1:+8562985 | Msa0533530:CDS |
| ATGAAATGTTTGTGATCCTC+AGG | 0.472515 | 4_1:-8561530 | None:intergenic |
| ATTGTTAATCAAGAAGATTA+TGG | 0.473966 | 4_1:-8562600 | None:intergenic |
| TTATGCAAGGTCTAGGGGTG+TGG | 0.478805 | 4_1:+8559924 | Msa0533530:CDS |
| CAAGGTCAGGTTAAAGTCAC+CGG | 0.479761 | 4_1:-8559821 | None:intergenic |
| TTTGGACCGGCTACTAGTAC+TGG | 0.479924 | 4_1:-8561413 | None:intergenic |
| TGCTGTAACGAACTGAATGC+TGG | 0.480708 | 4_1:+8559886 | Msa0533530:CDS |
| TATGCAAGGTCTAGGGGTGT+GGG | 0.481246 | 4_1:+8559925 | Msa0533530:CDS |
| CATACAATGTGATTAAGAAC+TGG | 0.481258 | 4_1:+8562660 | Msa0533530:CDS |
| GTTGTTACATTTACTGTTGG+TGG | 0.484847 | 4_1:+8559955 | Msa0533530:CDS |
| TTAACCCTCAAAGGCTCTCT+AGG | 0.484853 | 4_1:-8561860 | None:intergenic |
| TTGTTACATTTACTGTTGGT+GGG | 0.485744 | 4_1:+8559956 | Msa0533530:CDS |
| ATTGAGTAATCCAATGGGAT+TGG | 0.486444 | 4_1:+8561343 | Msa0533530:CDS |
| ACTGCTGCCTCCAATCCCAT+TGG | 0.487915 | 4_1:-8561353 | None:intergenic |
| CCTGGTAGCAAGTAACAGTC+TGG | 0.488780 | 4_1:-8560131 | None:intergenic |
| GAAGTTCACTGAGGATTTGG+AGG | 0.489308 | 4_1:-8563067 | None:intergenic |
| ACAGGTTCACGGCTGAAAGT+AGG | 0.491232 | 4_1:-8561209 | None:intergenic |
| CAGTGATTTGTATTGTTGGT+GGG | 0.495308 | 4_1:+8560025 | Msa0533530:CDS |
| AAGCTAGGGATTGGGTTGAA+GGG | 0.497192 | 4_1:-8559723 | None:intergenic |
| TCACATTGTATGGTCCATCA+TGG | 0.497871 | 4_1:-8562649 | None:intergenic |
| CAGGTTCACGGCTGAAAGTA+GGG | 0.500437 | 4_1:-8561208 | None:intergenic |
| ACAATGGTCAAGGAAATTGC+TGG | 0.500572 | 4_1:+8562711 | Msa0533530:CDS |
| TGCAATATGGTTCAATTGGA+TGG | 0.502043 | 4_1:+8562278 | Msa0533530:CDS |
| CCAGTGATTTGTATTGTTGG+TGG | 0.502339 | 4_1:+8560024 | Msa0533530:CDS |
| AGCAATTTCCTTGACCATTG+TGG | 0.508734 | 4_1:-8562709 | None:intergenic |
| GCAGATGGCATGACAGAATA+CGG | 0.509599 | 4_1:-8561494 | None:intergenic |
| GGGTTGATTCAGATGAAGCT+AGG | 0.509627 | 4_1:-8559738 | None:intergenic |
| AAATAACCATTCAAAAGCAT+TGG | 0.510545 | 4_1:-8565585 | None:intergenic |
| TCTGTCATGCCATCTGCTAA+AGG | 0.510996 | 4_1:+8561500 | Msa0533530:CDS |
| TGCATGATTCGAGGGATCCT+AGG | 0.513172 | 4_1:-8559633 | None:intergenic |
| GGTTCAATTGGATGGTCTGT+TGG | 0.514958 | 4_1:+8562286 | Msa0533530:CDS |
| TCAGGTGGTCGAGCAAGGTC+AGG | 0.515021 | 4_1:-8559834 | None:intergenic |
| TATTATTGTTCAGCCTGATA+GGG | 0.516594 | 4_1:+8561691 | Msa0533530:CDS |
| AGGAAAATGGAACAGGTTCA+CGG | 0.519353 | 4_1:-8561220 | None:intergenic |
| CTTCCACTAGTCGCCGTGCT+AGG | 0.519963 | 4_1:-8559771 | None:intergenic |
| TGAACCTAGAGAGCCTTTGA+GGG | 0.523049 | 4_1:+8561856 | Msa0533530:CDS |
| CCACCTAGCACGGCGACTAG+TGG | 0.523913 | 4_1:+8559768 | Msa0533530:CDS |
| TGACAGATTGAGTAATCCAA+TGG | 0.525959 | 4_1:+8561337 | Msa0533530:intron |
| TTGCCGAGACAGGGGACTCA+TGG | 0.526361 | 4_1:+8561933 | Msa0533530:CDS |
| GACAGATTGAGTAATCCAAT+GGG | 0.528687 | 4_1:+8561338 | Msa0533530:intron |
| ATAACAACACCTTCATCAAA+CGG | 0.529906 | 4_1:+8559676 | Msa0533530:CDS |
| TGTGTTGTTACATTTACTGT+TGG | 0.530399 | 4_1:+8559952 | Msa0533530:CDS |
| AGCTAGGGATTGGGTTGAAG+GGG | 0.531081 | 4_1:-8559722 | None:intergenic |
| AATTGTTTAATTGAGTTGAA+CGG | 0.532062 | 4_1:+8565522 | Msa0533530:three_prime_UTR |
| AGGAAATTGCTGGACCACTA+AGG | 0.533010 | 4_1:+8562721 | Msa0533530:CDS |
| ATAGGCTGTGGTCAACAACT+TGG | 0.534954 | 4_1:+8561085 | Msa0533530:intron |
| ACCGACATCTTCACCGTCCC+CGG | 0.536179 | 4_1:+8559802 | Msa0533530:CDS |
| GAGTAATCCAATGGGATTGG+AGG | 0.536971 | 4_1:+8561346 | Msa0533530:CDS |
| CAAAAGCTGAAATTGCCAAA+AGG | 0.537401 | 4_1:+8561965 | Msa0533530:CDS |
| AAGCGAGTGATTGCTTGCAT+TGG | 0.537832 | 4_1:+8562343 | Msa0533530:CDS |
| CCCTAGGCAGCCACCTAGCA+CGG | 0.538317 | 4_1:+8559758 | Msa0533530:CDS |
| ACACTAGCAAAGATACTTGA+GGG | 0.539219 | 4_1:+8565476 | Msa0533530:intron |
| GGAATTAGTCCTTTAGCAGA+TGG | 0.539613 | 4_1:-8561509 | None:intergenic |
| ATCTTCTTGATTAACAATGG+TGG | 0.543934 | 4_1:+8562605 | Msa0533530:CDS |
| ATCAGCCGATTCCACAATCT+CGG | 0.548115 | 4_1:-8561591 | None:intergenic |
| AAAAGAACATTAACCCTCAA+AGG | 0.553752 | 4_1:-8561869 | None:intergenic |
| AATGGGATTGGAGGCAGCAG+TGG | 0.555789 | 4_1:+8561355 | Msa0533530:CDS |
| GTTGCTTGAATGGGGATCAA+GGG | 0.556008 | 4_1:+8563024 | Msa0533530:CDS |
| ATTGAAGTTGAAATCCATGA+TGG | 0.557098 | 4_1:+8562635 | Msa0533530:CDS |
| GGTTGATTCAGATGAAGCTA+GGG | 0.561038 | 4_1:-8559737 | None:intergenic |
| AAACCATGAGTCCCCTGTCT+CGG | 0.564220 | 4_1:-8561936 | None:intergenic |
| AGCGATCAGGTGGTCGAGCA+AGG | 0.564623 | 4_1:-8559839 | None:intergenic |
| CTGCTGTTATTGCCGAGACA+GGG | 0.566446 | 4_1:+8561924 | Msa0533530:CDS |
| ATGGTGATTTGCATGATTCG+AGG | 0.568880 | 4_1:-8559642 | None:intergenic |
| GTGATTGCTTGCATTGGCGA+TGG | 0.569686 | 4_1:+8562349 | Msa0533530:CDS |
| AAGGTCAGGTTAAAGTCACC+GGG | 0.574556 | 4_1:-8559820 | None:intergenic |
| CAGGTTAAAGTCACCGGGGA+CGG | 0.576121 | 4_1:-8559815 | None:intergenic |
| AGATTGCTTATGCTTCATTG+AGG | 0.577157 | 4_1:+8562970 | Msa0533530:CDS |
| GATGCTATCCACAATGGTCA+AGG | 0.577985 | 4_1:+8562701 | Msa0533530:CDS |
| GAAACAGTGCCGTTTGATGA+AGG | 0.578220 | 4_1:-8559685 | None:intergenic |
| ATAATCTTCTTGATTAACAA+TGG | 0.579911 | 4_1:+8562602 | Msa0533530:CDS |
| GTTGTTATTATGTCGTTGCA+TGG | 0.581178 | 4_1:-8559661 | None:intergenic |
| CCACCAACAATACAAATCAC+TGG | 0.587155 | 4_1:-8560024 | None:intergenic |
| CCACTAGTCGCCGTGCTAGG+TGG | 0.587784 | 4_1:-8559768 | None:intergenic |
| ATTAAGAACTGGAATTACAC+TGG | 0.592024 | 4_1:+8562671 | Msa0533530:CDS |
| GCTTCATCTGAATCAACCCT+AGG | 0.593184 | 4_1:+8559742 | Msa0533530:CDS |
| CTGTCCACATCTCAGCATTG+TGG | 0.594204 | 4_1:-8562573 | None:intergenic |
| TGGTGATTTGCATGATTCGA+GGG | 0.596910 | 4_1:-8559641 | None:intergenic |
| GCTGAAAGTAGGGTGAGGAA+TGG | 0.602836 | 4_1:-8561198 | None:intergenic |
| CAGCCTGATAGGGTTGTGAT+CGG | 0.605042 | 4_1:+8561701 | Msa0533530:CDS |
| TCTCTAGGTTCAGATTTCAA+AGG | 0.609595 | 4_1:-8561845 | None:intergenic |
| AAAATCTTACTTTGGAGACA+AGG | 0.611605 | 4_1:-8561240 | None:intergenic |
| ATCAAGACACACCCAAATGT+AGG | 0.614087 | 4_1:-8561731 | None:intergenic |
| GCTTCGGTTCAGCGATCAGG+TGG | 0.616013 | 4_1:-8559849 | None:intergenic |
| TGCTGTTATTGCCGAGACAG+GGG | 0.619008 | 4_1:+8561925 | Msa0533530:CDS |
| TTCAACATGGACACAAACCT+AGG | 0.622509 | 4_1:+8559616 | Msa0533530:exon |
| AGCAAAGAGTTGCTTGAATG+GGG | 0.623231 | 4_1:+8563016 | Msa0533530:CDS |
| GACACTAGCAAAGATACTTG+AGG | 0.627260 | 4_1:+8565475 | Msa0533530:intron |
| GATGGTTATGCAAGGTCTAG+GGG | 0.628881 | 4_1:+8559919 | Msa0533530:CDS |
| TCACGGCTGAAAGTAGGGTG+AGG | 0.630951 | 4_1:-8561203 | None:intergenic |
| TGAAATTGCCAAAAGGATGT+GGG | 0.632720 | 4_1:+8561972 | Msa0533530:CDS |
| TTATATGTAGGTGACAGCAC+AGG | 0.638117 | 4_1:+8562544 | Msa0533530:intron |
| AATGCTGGATATGCTGCTGA+TGG | 0.647114 | 4_1:+8559901 | Msa0533530:CDS |
| GTGAAACCAGTACTAGTAGC+CGG | 0.648867 | 4_1:+8561407 | Msa0533530:CDS |
| GTTTCCACAATGCTGAGATG+TGG | 0.650310 | 4_1:+8562569 | Msa0533530:CDS |
| ACCGGGGACGGTGAAGATGT+CGG | 0.651929 | 4_1:-8559803 | None:intergenic |
| ATGCTGCTGATGGTTATGCA+AGG | 0.654095 | 4_1:+8559911 | Msa0533530:CDS |
| TGCTAAAGGACTAATTCCTG+AGG | 0.659904 | 4_1:+8561514 | Msa0533530:CDS |
| TAAATTTCTGAAGTTCACTG+AGG | 0.695310 | 4_1:-8563076 | None:intergenic |
| TTGGTTGATGCTATCCACAA+TGG | 0.702445 | 4_1:+8562695 | Msa0533530:CDS |
| GCACGGCGACTAGTGGAAGT+CGG | 0.702782 | 4_1:+8559775 | Msa0533530:CDS |
| AGGTCAGGTTAAAGTCACCG+GGG | 0.791887 | 4_1:-8559819 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAAAAAAATAAAAAT+AGG | - | chr4_1:8560183-8560202 | None:intergenic | 0.0% |
| !!! | TTTTTTTATTTTTTATTTTT+AGG | + | chr4_1:8560190-8560209 | Msa0533530:intron | 0.0% |
| !! | TTATAAAACTATTATTATCA+GGG | - | chr4_1:8560312-8560331 | None:intergenic | 10.0% |
| !! | TTTATAAAACTATTATTATC+AGG | - | chr4_1:8560313-8560332 | None:intergenic | 10.0% |
| !!! | TTTTGTATTTAAATTAGTTA+GGG | + | chr4_1:8560412-8560431 | Msa0533530:intron | 10.0% |
| !! | TCAGAAATAATATTATAATA+TGG | + | chr4_1:8560765-8560784 | Msa0533530:intron | 10.0% |
| !! | AAATAATATTATAATATGGT+TGG | + | chr4_1:8560769-8560788 | Msa0533530:intron | 10.0% |
| !! | TATGATATAAACAATTTAAT+CGG | - | chr4_1:8562516-8562535 | None:intergenic | 10.0% |
| !!! | CATATTTTAAAATTATATGT+AGG | + | chr4_1:8562532-8562551 | Msa0533530:intron | 10.0% |
| !! | TAATCAAATATACAAATTAA+TGG | - | chr4_1:8562888-8562907 | None:intergenic | 10.0% |
| !!! | TTAATTTGTATATTTGATTA+TGG | + | chr4_1:8562888-8562907 | Msa0533530:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTTTGCAT+CGG | - | chr4_1:8563437-8563456 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAAAGTCTAT+CGG | + | chr4_1:8563450-8563469 | Msa0533530:intron | 10.0% |
| !! | AAAACTTATTTATATATGAA+AGG | - | chr4_1:8563624-8563643 | None:intergenic | 10.0% |
| !!! | CTTATAGAAAATTTTATTTT+TGG | + | chr4_1:8564366-8564385 | Msa0533530:intron | 10.0% |
| !!! | GTTTTGTATTTAAATTAGTT+AGG | + | chr4_1:8560411-8560430 | Msa0533530:intron | 15.0% |
| !! | TTTGTATTTAAATTAGTTAG+GGG | + | chr4_1:8560413-8560432 | Msa0533530:intron | 15.0% |
| !!! | TATAAAAAGTTTTCAAGTAT+AGG | + | chr4_1:8560574-8560593 | Msa0533530:intron | 15.0% |
| !! | AAATTATAATAAGACAGATT+TGG | - | chr4_1:8560827-8560846 | None:intergenic | 15.0% |
| !!! | AAATCTGTCTTATTATAATT+TGG | + | chr4_1:8560826-8560845 | Msa0533530:intron | 15.0% |
| !!! | AAGTAAAATCAATATTTTCA+AGG | + | chr4_1:8560869-8560888 | Msa0533530:intron | 15.0% |
| !! | AAAAATTTACTAGCAAAATT+TGG | - | chr4_1:8562452-8562471 | None:intergenic | 15.0% |
| !!! | ATCTACTATCTAATTTTTTA+TGG | + | chr4_1:8563298-8563317 | Msa0533530:intron | 15.0% |
| !!! | TTTTTTTTTATCAAGGAATT+AGG | + | chr4_1:8563650-8563669 | Msa0533530:intron | 15.0% |
| !!! | GAAAATTTTATTTTTGGTAT+AGG | + | chr4_1:8564372-8564391 | Msa0533530:intron | 15.0% |
| !!! | TTTTAAATCACATCTATATT+GGG | + | chr4_1:8564404-8564423 | Msa0533530:intron | 15.0% |
| !! | ATAAAAACTATAACATAACA+AGG | - | chr4_1:8564563-8564582 | None:intergenic | 15.0% |
| !!! | TTGTTATGTTATAGTTTTTA+TGG | + | chr4_1:8564562-8564581 | Msa0533530:intron | 15.0% |
| !! | AATAAAACAATGCTTAATTT+AGG | + | chr4_1:8565081-8565100 | Msa0533530:intron | 15.0% |
| !! | TTTATATATTTGATTATGGT+AGG | + | chr4_1:8565357-8565376 | Msa0533530:intron | 15.0% |
| !! | TGCCAAATATTTAATACTTA+GGG | + | chr4_1:8560384-8560403 | Msa0533530:intron | 20.0% |
| !! | TTGTATTTAAATTAGTTAGG+GGG | + | chr4_1:8560414-8560433 | Msa0533530:intron | 20.0% |
| !! | ACACAACAATAATACATATT+AGG | - | chr4_1:8560487-8560506 | None:intergenic | 20.0% |
| !! | ACTTTCTGAATTCATATTTA+AGG | - | chr4_1:8560853-8560872 | None:intergenic | 20.0% |
| !! | TATAAAAGTTAAACATTGCA+TGG | + | chr4_1:8560906-8560925 | Msa0533530:intron | 20.0% |
| !! | AAACCAAATCTTATCAAATA+TGG | - | chr4_1:8560935-8560954 | None:intergenic | 20.0% |
| !!! | ATAAGATTTGGTTTACTATT+TGG | + | chr4_1:8560941-8560960 | Msa0533530:intron | 20.0% |
| !! | TAATGAGTAAAATCTTACTT+TGG | - | chr4_1:8561251-8561270 | None:intergenic | 20.0% |
| !! | AATCTGTCAAAAGTTATTAT+TGG | - | chr4_1:8561326-8561345 | None:intergenic | 20.0% |
| !!! | TAGAATTTGATTTTTGGTAT+TGG | + | chr4_1:8562009-8562028 | Msa0533530:intron | 20.0% |
| !! | ACAAAAACAATAACATAACA+AGG | - | chr4_1:8562212-8562231 | None:intergenic | 20.0% |
| !!! | TGTAGCATATTTTGATAAAA+AGG | + | chr4_1:8562229-8562248 | Msa0533530:intron | 20.0% |
| !! | ATAATTAAGTAAAAGCTTAG+AGG | - | chr4_1:8562476-8562495 | None:intergenic | 20.0% |
| !! | ATTGTTAATCAAGAAGATTA+TGG | - | chr4_1:8562603-8562622 | None:intergenic | 20.0% |
| !! | ATAATCTTCTTGATTAACAA+TGG | + | chr4_1:8562602-8562621 | Msa0533530:CDS | 20.0% |
| !! | TTTGTATATTTGATTATGGT+AGG | + | chr4_1:8562892-8562911 | Msa0533530:intron | 20.0% |
| !!! | AATTGTTTAATTGAGTTGAA+CGG | + | chr4_1:8563195-8563214 | Msa0533530:intron | 20.0% |
| !!! | CTTTTGAATGGTTATTTTAT+AGG | + | chr4_1:8563264-8563283 | Msa0533530:intron | 20.0% |
| !!! | CTAAATAAGTTTTATGAGAT+CGG | + | chr4_1:8563482-8563501 | Msa0533530:intron | 20.0% |
| !! | TAAAGATTGAGTAATCAAAT+AGG | + | chr4_1:8563698-8563717 | Msa0533530:intron | 20.0% |
| !! | TTATGAATTGTTTAACCAAA+TGG | + | chr4_1:8563761-8563780 | Msa0533530:intron | 20.0% |
| !! | TATGAATTGTTTAACCAAAT+GGG | + | chr4_1:8563762-8563781 | Msa0533530:intron | 20.0% |
| !!! | CTTTTAAATCACATCTATAT+TGG | + | chr4_1:8564403-8564422 | Msa0533530:intron | 20.0% |
| !!! | TTTTCAACATATTCAGAATA+TGG | + | chr4_1:8561889-8561908 | Msa0533530:CDS | 20.0% |
| !!! | AACAAATATTAAGTTTTGAG+AGG | - | chr4_1:8565253-8565272 | None:intergenic | 20.0% |
| !!! | AATTGTTTAATTGAGTTGAA+CGG | + | chr4_1:8563195-8563214 | Msa0533530:intron | 20.0% |
| !!! | CTTTTGAATGGTTATTTTAT+AGG | + | chr4_1:8563264-8563283 | Msa0533530:intron | 20.0% |
| !!! | AAAGTTTTTTGATGTGTTTG+AGG | - | chr4_1:8559581-8559600 | None:intergenic | 25.0% |
| ! | AGAATTCTTCATCATACTAT+TGG | + | chr4_1:8560075-8560094 | Msa0533530:CDS | 25.0% |
| ! | TTTAATACCTATACTAGCTA+AGG | - | chr4_1:8560216-8560235 | None:intergenic | 25.0% |
| ! | TTGAAAAAAAATAGTGACAC+TGG | + | chr4_1:8560276-8560295 | Msa0533530:intron | 25.0% |
| ! | AGTGCAACTATATAATATGT+AGG | + | chr4_1:8560346-8560365 | Msa0533530:intron | 25.0% |
| ! | CTGCCAAATATTTAATACTT+AGG | + | chr4_1:8560383-8560402 | Msa0533530:intron | 25.0% |
| ! | GCCAAATATTTAATACTTAG+GGG | + | chr4_1:8560385-8560404 | Msa0533530:intron | 25.0% |
| ! | CCAAATATTTAATACTTAGG+GGG | + | chr4_1:8560386-8560405 | Msa0533530:intron | 25.0% |
| ! | ATGTATTATTGTTGTGTTGT+TGG | + | chr4_1:8560490-8560509 | Msa0533530:intron | 25.0% |
| !!! | AAAGTTTTCAAGTATAGGTT+CGG | + | chr4_1:8560579-8560598 | Msa0533530:intron | 25.0% |
| ! | TGTCCATATTTGATAAGATT+TGG | + | chr4_1:8560929-8560948 | Msa0533530:intron | 25.0% |
| !!! | CTCATAAATCTGCATTTTTT+TGG | + | chr4_1:8560997-8561016 | Msa0533530:intron | 25.0% |
| ! | ATTGATTGACTGTGTTAAAA+TGG | + | chr4_1:8561040-8561059 | Msa0533530:intron | 25.0% |
| ! | TAAAATGGCTTATTTGTACT+TGG | + | chr4_1:8561055-8561074 | Msa0533530:intron | 25.0% |
| !! | TTTGTACTTGGTTTGATTAT+AGG | + | chr4_1:8561067-8561086 | Msa0533530:intron | 25.0% |
| !!! | TTTTAGTTTCATCTTTGACT+TGG | + | chr4_1:8561293-8561312 | Msa0533530:intron | 25.0% |
| ! | GAACTGTAATCATTGAAAAT+AGG | - | chr4_1:8561635-8561654 | None:intergenic | 25.0% |
| !!! | AGCTTCTAGAATTTGATTTT+TGG | + | chr4_1:8562003-8562022 | Msa0533530:intron | 25.0% |
| ! | GAACGAAAGAAAAAAAATTG+TGG | - | chr4_1:8562185-8562204 | None:intergenic | 25.0% |
| ! | CAAAAGATTAATTACCTTAG+TGG | - | chr4_1:8562738-8562757 | None:intergenic | 25.0% |
| ! | TTTCATATTTAACAACAGTG+AGG | - | chr4_1:8562788-8562807 | None:intergenic | 25.0% |
| ! | ATTAAGCTGAGATTACTTTA+AGG | + | chr4_1:8563138-8563157 | Msa0533530:three_prime_UTR | 25.0% |
| !! | ATTACTTTAAGGATACTTGA+GGG | + | chr4_1:8563149-8563168 | Msa0533530:intron | 25.0% |
| !!! | TGAGGGATATTTTATTTTGT+TGG | + | chr4_1:8563166-8563185 | Msa0533530:intron | 25.0% |
| !! | AAATAACCATTCAAAAGCAT+TGG | - | chr4_1:8563261-8563280 | None:intergenic | 25.0% |
| ! | CATAATATTGTGTTTAGTGT+TGG | + | chr4_1:8563329-8563348 | Msa0533530:intron | 25.0% |
| ! | ATTATTATCAAGGATTTCCA+TGG | - | chr4_1:8563370-8563389 | None:intergenic | 25.0% |
| ! | TTTAAATCAGCTTATTTCAG+AGG | - | chr4_1:8563406-8563425 | None:intergenic | 25.0% |
| ! | TATATGAAAGGCTAAAACAA+TGG | - | chr4_1:8563612-8563631 | None:intergenic | 25.0% |
| ! | AAAAGAACATTAACCTTCAA+AGG | - | chr4_1:8564233-8564252 | None:intergenic | 25.0% |
| !!! | TAACATAACAAGGTTTTGAA+TGG | - | chr4_1:8562202-8562221 | None:intergenic | 25.0% |
| !! | ACTGCTTAAGAGAATTATTT+TGG | + | chr4_1:8564774-8564793 | Msa0533530:intron | 25.0% |
| !! | CTGCTTAAGAGAATTATTTT+GGG | + | chr4_1:8564775-8564794 | Msa0533530:intron | 25.0% |
| !!! | TGAGGGATATTTTATTTTGT+TGG | + | chr4_1:8563166-8563185 | Msa0533530:intron | 25.0% |
| !! | AAATAACCATTCAAAAGCAT+TGG | - | chr4_1:8563261-8563280 | None:intergenic | 25.0% |
| !!! | CTCTCTCATTTTTTTCAACA+TGG | + | chr4_1:8559603-8559622 | Msa0533530:exon | 30.0% |
| ATAACAACACCTTCATCAAA+CGG | + | chr4_1:8559676-8559695 | Msa0533530:CDS | 30.0% | |
| ! | TGTGTTGTTACATTTACTGT+TGG | + | chr4_1:8559952-8559971 | Msa0533530:CDS | 30.0% |
| TTGTTACATTTACTGTTGGT+GGG | + | chr4_1:8559956-8559975 | Msa0533530:CDS | 30.0% | |
| ! | TTACCAGTGATTTGTATTGT+TGG | + | chr4_1:8560021-8560040 | Msa0533530:CDS | 30.0% |
| ! | GGCCTAATTCTAATGATTTT+GGG | + | chr4_1:8560046-8560065 | Msa0533530:CDS | 30.0% |
| GTCCCAAAATCATTAGAATT+AGG | - | chr4_1:8560051-8560070 | None:intergenic | 30.0% | |
| CCCCCTAAGTATTAAATATT+TGG | - | chr4_1:8560389-8560408 | None:intergenic | 30.0% | |
| ! | ATTAGGCTTAATTGCACTTT+TGG | - | chr4_1:8560470-8560489 | None:intergenic | 30.0% |
| ATGCAGATTTATGAGAAGAA+AGG | - | chr4_1:8560992-8561011 | None:intergenic | 30.0% | |
| ! | AAAATCTTACTTTGGAGACA+AGG | - | chr4_1:8561243-8561262 | None:intergenic | 30.0% |
| ! | AACATTTCATTGGAACGTTT+TGG | + | chr4_1:8561543-8561562 | Msa0533530:CDS | 30.0% |
| ! | ACATTTCATTGGAACGTTTT+GGG | + | chr4_1:8561544-8561563 | Msa0533530:CDS | 30.0% |
| TTCAATGATTACAGTTCTGT+TGG | + | chr4_1:8561638-8561657 | Msa0533530:CDS | 30.0% | |
| TATTATTGTTCAGCCTGATA+GGG | + | chr4_1:8561691-8561710 | Msa0533530:CDS | 30.0% | |
| CTGCTTATGAGAATTATTTC+AGG | + | chr4_1:8561801-8561820 | Msa0533530:CDS | 30.0% | |
| AAAAGAACATTAACCCTCAA+AGG | - | chr4_1:8561872-8561891 | None:intergenic | 30.0% | |
| TGTATTTGACTACAATTCTC+TGG | - | chr4_1:8562079-8562098 | None:intergenic | 30.0% | |
| ATCTTCTTGATTAACAATGG+TGG | + | chr4_1:8562605-8562624 | Msa0533530:CDS | 30.0% | |
| ATTGAAGTTGAAATCCATGA+TGG | + | chr4_1:8562635-8562654 | Msa0533530:CDS | 30.0% | |
| CAGTTCTTAATCACATTGTA+TGG | - | chr4_1:8562662-8562681 | None:intergenic | 30.0% | |
| CATACAATGTGATTAAGAAC+TGG | + | chr4_1:8562660-8562679 | Msa0533530:CDS | 30.0% | |
| ATTAAGAACTGGAATTACAC+TGG | + | chr4_1:8562671-8562690 | Msa0533530:CDS | 30.0% | |
| ! | CACATTTTCATATGATGTGT+TGG | + | chr4_1:8562843-8562862 | Msa0533530:intron | 30.0% |
| ! | ATTTTCATATGATGTGTTGG+TGG | + | chr4_1:8562846-8562865 | Msa0533530:intron | 30.0% |
| AAGCATAAGCAATCTTTCTT+TGG | - | chr4_1:8562965-8562984 | None:intergenic | 30.0% | |
| !! | TAAATTTCTGAAGTTCACTG+AGG | - | chr4_1:8563079-8563098 | None:intergenic | 30.0% |
| ! | GATTACTTTAAGGATACTTG+AGG | + | chr4_1:8563148-8563167 | Msa0533530:intron | 30.0% |
| AGCAAGTGCAATTATTATCA+AGG | - | chr4_1:8563380-8563399 | None:intergenic | 30.0% | |
| !! | TAGACTTTTGAGAAAAACTG+AGG | + | chr4_1:8563527-8563546 | Msa0533530:intron | 30.0% |
| !! | AGACTTTTGAGAAAAACTGA+GGG | + | chr4_1:8563528-8563547 | Msa0533530:intron | 30.0% |
| CAAGAATGAAAATTGCTCTA+TGG | - | chr4_1:8563556-8563575 | None:intergenic | 30.0% | |
| ! | AGAGCAATTTTCATTCTTGA+TGG | + | chr4_1:8563557-8563576 | Msa0533530:intron | 30.0% |
| ! | GAGCAATTTTCATTCTTGAT+GGG | + | chr4_1:8563558-8563577 | Msa0533530:intron | 30.0% |
| GCATACAAATTCTATTCTTG+TGG | + | chr4_1:8563580-8563599 | Msa0533530:intron | 30.0% | |
| ATTGAGTAATCAAATAGGAC+TGG | + | chr4_1:8563703-8563722 | Msa0533530:intron | 30.0% | |
| ATTGTTTAACCAAATGGGAT+TGG | + | chr4_1:8563767-8563786 | Msa0533530:intron | 30.0% | |
| !! | GCTTTTTCTACTCTTAGTTT+TGG | - | chr4_1:8563858-8563877 | None:intergenic | 30.0% |
| ! | AGCATGTAAAGCTTTTATTG+AGG | + | chr4_1:8563875-8563894 | Msa0533530:intron | 30.0% |
| !!! | CAATGCATACCTTTTTTACT+GGG | + | chr4_1:8563971-8563990 | Msa0533530:intron | 30.0% |
| TAACTGCAGTCATTGAAAAT+AGG | - | chr4_1:8563997-8564016 | None:intergenic | 30.0% | |
| CTATCATTGTTCATCCTATA+GGG | + | chr4_1:8564052-8564071 | Msa0533530:intron | 30.0% | |
| ATTGGAAATACTCCTACATT+TGG | + | chr4_1:8564080-8564099 | Msa0533530:intron | 30.0% | |
| TTGGAAATACTCCTACATTT+GGG | + | chr4_1:8564081-8564100 | Msa0533530:intron | 30.0% | |
| AAGCAGTATTATTCCTCTTA+AGG | - | chr4_1:8564148-8564167 | None:intergenic | 30.0% | |
| ! | CTGCTTATGAGAACTATTTT+AGG | + | chr4_1:8564162-8564181 | Msa0533530:intron | 30.0% |
| !! | TTTAGGATTTTTGTTCCTGA+AGG | + | chr4_1:8564179-8564198 | Msa0533530:intron | 30.0% |
| !! | CTTTTGGAAATTTGAGCTTT+TGG | - | chr4_1:8564328-8564347 | None:intergenic | 30.0% |
| CAAAAGCTCAAATTTCCAAA+AGG | + | chr4_1:8564326-8564345 | Msa0533530:intron | 30.0% | |
| TCAAATTTCCAAAAGGATGT+GGG | + | chr4_1:8564333-8564352 | Msa0533530:intron | 30.0% | |
| AAAAGAACATTAACCCTCAA+AGG | - | chr4_1:8561872-8561891 | None:intergenic | 30.0% | |
| ! | AATACTTACCCACATCTTTT+TGG | - | chr4_1:8564956-8564975 | None:intergenic | 30.0% |
| !!! | CGATCGTATGTATGTTTTTT+TGG | - | chr4_1:8565108-8565127 | None:intergenic | 30.0% |
| AAGGAGATTAATTACCTTAG+TGG | - | chr4_1:8565213-8565232 | None:intergenic | 30.0% | |
| ! | GTTGTTATTATGTCGTTGCA+TGG | - | chr4_1:8559664-8559683 | None:intergenic | 35.0% |
| GTTGTTACATTTACTGTTGG+TGG | + | chr4_1:8559955-8559974 | Msa0533530:CDS | 35.0% | |
| ! | CAGTGATTTGTATTGTTGGT+GGG | + | chr4_1:8560025-8560044 | Msa0533530:CDS | 35.0% |
| ! | GGGCCTAATTCTAATGATTT+TGG | + | chr4_1:8560045-8560064 | Msa0533530:CDS | 35.0% |
| !! | AGAGAGATTGAGTTGAGATT+TGG | - | chr4_1:8560158-8560177 | None:intergenic | 35.0% |
| ! | TTTTAGGCCTTAGCTAGTAT+AGG | + | chr4_1:8560206-8560225 | Msa0533530:intron | 35.0% |
| AAAAATAGTGACACTGGCAT+AGG | + | chr4_1:8560282-8560301 | Msa0533530:intron | 35.0% | |
| CAGCTTATGCTTATGTAAAC+AGG | - | chr4_1:8561167-8561186 | None:intergenic | 35.0% | |
| ! | TACTTTGGAGACAAGGAAAA+TGG | - | chr4_1:8561236-8561255 | None:intergenic | 35.0% |
| TGACAGATTGAGTAATCCAA+TGG | + | chr4_1:8561337-8561356 | Msa0533530:intron | 35.0% | |
| GACAGATTGAGTAATCCAAT+GGG | + | chr4_1:8561338-8561357 | Msa0533530:intron | 35.0% | |
| ATTGAGTAATCCAATGGGAT+TGG | + | chr4_1:8561343-8561362 | Msa0533530:CDS | 35.0% | |
| ATGAAATGTTTGTGATCCTC+AGG | - | chr4_1:8561533-8561552 | None:intergenic | 35.0% | |
| GAGGATCACAAACATTTCAT+TGG | + | chr4_1:8561533-8561552 | Msa0533530:CDS | 35.0% | |
| ! | CATTTCATTGGAACGTTTTG+GGG | + | chr4_1:8561545-8561564 | Msa0533530:CDS | 35.0% |
| TGAAAATAGGTCCAGCAAAT+AGG | - | chr4_1:8561622-8561641 | None:intergenic | 35.0% | |
| CTATTATTGTTCAGCCTGAT+AGG | + | chr4_1:8561690-8561709 | Msa0533530:CDS | 35.0% | |
| AAGCAGTATTGTTCCTCTTA+AGG | - | chr4_1:8561787-8561806 | None:intergenic | 35.0% | |
| ! | TTCAGGATTTTTGTTCCTGA+AGG | + | chr4_1:8561818-8561837 | Msa0533530:CDS | 35.0% |
| TCTCTAGGTTCAGATTTCAA+AGG | - | chr4_1:8561848-8561867 | None:intergenic | 35.0% | |
| ! | CTTTTGGCAATTTCAGCTTT+TGG | - | chr4_1:8561967-8561986 | None:intergenic | 35.0% |
| CAAAAGCTGAAATTGCCAAA+AGG | + | chr4_1:8561965-8561984 | Msa0533530:CDS | 35.0% | |
| TGAAATTGCCAAAAGGATGT+GGG | + | chr4_1:8561972-8561991 | Msa0533530:CDS | 35.0% | |
| ! | ATTACTTACCCACATCCTTT+TGG | - | chr4_1:8561983-8562002 | None:intergenic | 35.0% |
| TATGAGTTCCAGATGCAATA+TGG | + | chr4_1:8562265-8562284 | Msa0533530:CDS | 35.0% | |
| CAATTGAACCATATTGCATC+TGG | - | chr4_1:8562276-8562295 | None:intergenic | 35.0% | |
| CAGATGCAATATGGTTCAAT+TGG | + | chr4_1:8562274-8562293 | Msa0533530:CDS | 35.0% | |
| TGCAATATGGTTCAATTGGA+TGG | + | chr4_1:8562278-8562297 | Msa0533530:CDS | 35.0% | |
| TAGTATGTGCAATACAAACC+TGG | - | chr4_1:8562381-8562400 | None:intergenic | 35.0% | |
| ! | ATGGTAGGTCTTTTGTGAAA+AGG | + | chr4_1:8562907-8562926 | Msa0533530:intron | 35.0% |
| AGATTGCTTATGCTTCATTG+AGG | + | chr4_1:8562970-8562989 | Msa0533530:CDS | 35.0% | |
| TAGCAAAGAGTTGCTTGAAT+GGG | + | chr4_1:8563015-8563034 | Msa0533530:CDS | 35.0% | |
| !! | AGCATTGGTGCAAAAAAAGT+TGG | - | chr4_1:8563246-8563265 | None:intergenic | 35.0% |
| ! | TTTGCACCAATGCTTTTGAA+TGG | + | chr4_1:8563252-8563271 | Msa0533530:intron | 35.0% |
| !! | GACTTTTGAGAAAAACTGAG+GGG | + | chr4_1:8563529-8563548 | Msa0533530:intron | 35.0% |
| !! | ACTTTTGAGAAAAACTGAGG+GGG | + | chr4_1:8563530-8563549 | Msa0533530:intron | 35.0% |
| AAAGGCTAAAACAATGGCTT+GGG | - | chr4_1:8563606-8563625 | None:intergenic | 35.0% | |
| AACACTTCATTGGAACATTC+TGG | + | chr4_1:8563904-8563923 | Msa0533530:intron | 35.0% | |
| ACACTTCATTGGAACATTCT+GGG | + | chr4_1:8563905-8563924 | Msa0533530:intron | 35.0% | |
| ! | CCAGTAAAAAAGGTATGCAT+TGG | - | chr4_1:8563973-8563992 | None:intergenic | 35.0% |
| !!! | CCAATGCATACCTTTTTTAC+TGG | + | chr4_1:8563970-8563989 | Msa0533530:intron | 35.0% |
| GAAAATAGGCCCAGTAAAAA+AGG | - | chr4_1:8563983-8564002 | None:intergenic | 35.0% | |
| TTCAATGACTGCAGTTATGT+TGG | + | chr4_1:8564000-8564019 | Msa0533530:intron | 35.0% | |
| GCTATCATTGTTCATCCTAT+AGG | + | chr4_1:8564051-8564070 | Msa0533530:intron | 35.0% | |
| ATTTCCAATCACAACCCTAT+AGG | - | chr4_1:8564069-8564088 | None:intergenic | 35.0% | |
| ATCAAAACACACCCAAATGT+AGG | - | chr4_1:8564095-8564114 | None:intergenic | 35.0% | |
| !!! | ATTTGGGTGTGTTTTGATGA+AGG | + | chr4_1:8564097-8564116 | Msa0533530:intron | 35.0% |
| AGCAATAACTACAGTTTCAC+TGG | - | chr4_1:8564279-8564298 | None:intergenic | 35.0% | |
| TGAAACTGTAGTTATTGCTG+AGG | + | chr4_1:8564280-8564299 | Msa0533530:intron | 35.0% | |
| CTCAAATTTCCAAAAGGATG+TGG | + | chr4_1:8564332-8564351 | Msa0533530:intron | 35.0% | |
| ! | ATTACTTACCCACATCCTTT+TGG | - | chr4_1:8561983-8562002 | None:intergenic | 35.0% |
| ATTGGTCGCGATTTATTGAA+GGG | - | chr4_1:8564518-8564537 | None:intergenic | 35.0% | |
| AATTGGTCGCGATTTATTGA+AGG | - | chr4_1:8564519-8564538 | None:intergenic | 35.0% | |
| TATGAGTTCCAGATGCAATA+TGG | + | chr4_1:8562265-8562284 | Msa0533530:CDS | 35.0% | |
| CAATTGATCCATATTGCATC+TGG | - | chr4_1:8564627-8564646 | None:intergenic | 35.0% | |
| CAGATGCAATATGGATCAAT+TGG | + | chr4_1:8564625-8564644 | Msa0533530:intron | 35.0% | |
| TGCAATATGGATCAATTGGA+TGG | + | chr4_1:8564629-8564648 | Msa0533530:intron | 35.0% | |
| TGATCAGTGATTGTTTGCAT+TGG | + | chr4_1:8564697-8564716 | Msa0533530:intron | 35.0% | |
| !! | TTTGGGATTTTTGTTGCTGA+AGG | + | chr4_1:8564792-8564811 | Msa0533530:intron | 35.0% |
| !! | TTTTTGGCAATCTCAGCTTT+TGG | - | chr4_1:8564940-8564959 | None:intergenic | 35.0% |
| TGAGATTGCCAAAAAGATGT+GGG | + | chr4_1:8564945-8564964 | Msa0533530:intron | 35.0% | |
| ! | TTAAGGAAATTACACTGGCT+TGG | + | chr4_1:8565151-8565170 | Msa0533530:intron | 35.0% |
| GGAACGTAGCGTATTAATTA+AGG | - | chr4_1:8565232-8565251 | None:intergenic | 35.0% | |
| ! | TACGACACGTTTTCAATATG+AGG | + | chr4_1:8565302-8565321 | Msa0533530:intron | 35.0% |
| ! | ACGTTTTCAATATGAGGTGT+CGG | + | chr4_1:8565308-8565327 | Msa0533530:intron | 35.0% |
| GGATTACTTATGCTTCATTG+AGG | + | chr4_1:8565435-8565454 | Msa0533530:intron | 35.0% | |
| ACACTAGCAAAGATACTTGA+GGG | + | chr4_1:8565476-8565495 | Msa0533530:intron | 35.0% | |
| !! | AGCATTGGTGCAAAAAAAGT+TGG | - | chr4_1:8563246-8563265 | None:intergenic | 35.0% |
| ! | TTTGCACCAATGCTTTTGAA+TGG | + | chr4_1:8563252-8563271 | Msa0533530:intron | 35.0% |
| TTCAACATGGACACAAACCT+AGG | + | chr4_1:8559616-8559635 | Msa0533530:exon | 40.0% | |
| ! | TGGTGATTTGCATGATTCGA+GGG | - | chr4_1:8559644-8559663 | None:intergenic | 40.0% |
| ! | ATGGTGATTTGCATGATTCG+AGG | - | chr4_1:8559645-8559664 | None:intergenic | 40.0% |
| !! | TGAAGGGGATTTTTGGATTG+TGG | - | chr4_1:8559710-8559729 | None:intergenic | 40.0% |
| !!! | ATTGGGTTGAAGGGGATTTT+TGG | - | chr4_1:8559717-8559736 | None:intergenic | 40.0% |
| TTCAGATGAAGCTAGGGATT+GGG | - | chr4_1:8559734-8559753 | None:intergenic | 40.0% | |
| ATTCAGATGAAGCTAGGGAT+TGG | - | chr4_1:8559735-8559754 | None:intergenic | 40.0% | |
| ! | GGTTGATTCAGATGAAGCTA+GGG | - | chr4_1:8559740-8559759 | None:intergenic | 40.0% |
| TGATGGTTATGCAAGGTCTA+GGG | + | chr4_1:8559918-8559937 | Msa0533530:CDS | 40.0% | |
| AGCGTGATTAATGCTATTGC+TGG | + | chr4_1:8559982-8560001 | Msa0533530:CDS | 40.0% | |
| CCACCAACAATACAAATCAC+TGG | - | chr4_1:8560027-8560046 | None:intergenic | 40.0% | |
| ! | CCAGTGATTTGTATTGTTGG+TGG | + | chr4_1:8560024-8560043 | Msa0533530:CDS | 40.0% |
| CTAAGTTCCTGGCTAAAATC+AGG | - | chr4_1:8560105-8560124 | None:intergenic | 40.0% | |
| !! | CTGATTTTAGCCAGGAACTT+AGG | + | chr4_1:8560103-8560122 | Msa0533530:CDS | 40.0% |
| !! | ATTGAGTTGAGATTTGGACC+TGG | - | chr4_1:8560152-8560171 | None:intergenic | 40.0% |
| !!! | ACCGCAAGTTTTGGAAAGAT+AGG | + | chr4_1:8560442-8560461 | Msa0533530:intron | 40.0% |
| CCCTATCTTTCCAAAACTTG+CGG | - | chr4_1:8560446-8560465 | None:intergenic | 40.0% | |
| !!! | CCGCAAGTTTTGGAAAGATA+GGG | + | chr4_1:8560443-8560462 | Msa0533530:intron | 40.0% |
| !!! | CGCAAGTTTTGGAAAGATAG+GGG | + | chr4_1:8560444-8560463 | Msa0533530:intron | 40.0% |
| ! | CTTGGTTTGATTATAGGCTG+TGG | + | chr4_1:8561073-8561092 | Msa0533530:intron | 40.0% |
| AGGAAAATGGAACAGGTTCA+CGG | - | chr4_1:8561223-8561242 | None:intergenic | 40.0% | |
| ! | GCTTTCGCTACTCTTAGTTT+TGG | - | chr4_1:8561434-8561453 | None:intergenic | 40.0% |
| GGAATTAGTCCTTTAGCAGA+TGG | - | chr4_1:8561512-8561531 | None:intergenic | 40.0% | |
| TGCTAAAGGACTAATTCCTG+AGG | + | chr4_1:8561514-8561533 | Msa0533530:CDS | 40.0% | |
| ATCGGAAATGGTCCTACATT+TGG | + | chr4_1:8561719-8561738 | Msa0533530:CDS | 40.0% | |
| TCGGAAATGGTCCTACATTT+GGG | + | chr4_1:8561720-8561739 | Msa0533530:CDS | 40.0% | |
| ATCAAGACACACCCAAATGT+AGG | - | chr4_1:8561734-8561753 | None:intergenic | 40.0% | |
| GATTTCAAAGGCAAACCTTC+AGG | - | chr4_1:8561836-8561855 | None:intergenic | 40.0% | |
| CTGAAATTGCCAAAAGGATG+TGG | + | chr4_1:8561971-8561990 | Msa0533530:CDS | 40.0% | |
| TGCGATTAAGGTTGCTTAAG+TGG | - | chr4_1:8562107-8562126 | None:intergenic | 40.0% | |
| TTATATGTAGGTGACAGCAC+AGG | + | chr4_1:8562544-8562563 | Msa0533530:intron | 40.0% | |
| TCACATTGTATGGTCCATCA+TGG | - | chr4_1:8562652-8562671 | None:intergenic | 40.0% | |
| ! | TTGGTTGATGCTATCCACAA+TGG | + | chr4_1:8562695-8562714 | Msa0533530:CDS | 40.0% |
| AGCAATTTCCTTGACCATTG+TGG | - | chr4_1:8562712-8562731 | None:intergenic | 40.0% | |
| ACAATGGTCAAGGAAATTGC+TGG | + | chr4_1:8562711-8562730 | Msa0533530:CDS | 40.0% | |
| CACATCACTTTCACAAACAC+CGG | + | chr4_1:8562808-8562827 | Msa0533530:intron | 40.0% | |
| CATTGAGGTGATTGTTCACA+AGG | + | chr4_1:8562985-8563004 | Msa0533530:CDS | 40.0% | |
| CTAGCAAAGAGTTGCTTGAA+TGG | + | chr4_1:8563014-8563033 | Msa0533530:CDS | 40.0% | |
| AGCAAAGAGTTGCTTGAATG+GGG | + | chr4_1:8563016-8563035 | Msa0533530:CDS | 40.0% | |
| ! | TCTGAAGTTCACTGAGGATT+TGG | - | chr4_1:8563073-8563092 | None:intergenic | 40.0% |
| ! | GGATCATGTGTCTTTTTCCA+TGG | + | chr4_1:8563350-8563369 | Msa0533530:intron | 40.0% |
| GAAAGGCTAAAACAATGGCT+TGG | - | chr4_1:8563607-8563626 | None:intergenic | 40.0% | |
| GAGTAATCAAATAGGACTGG+AGG | + | chr4_1:8563706-8563725 | Msa0533530:intron | 40.0% | |
| GTTTAACCAAATGGGATTGG+AGG | + | chr4_1:8563770-8563789 | Msa0533530:intron | 40.0% | |
| GTGAAACCAATACTAGTAGC+AGG | + | chr4_1:8563831-8563850 | Msa0533530:intron | 40.0% | |
| TTTGGACCTGCTACTAGTAT+TGG | - | chr4_1:8563840-8563859 | None:intergenic | 40.0% | |
| GAGGATCACAAACACTTCAT+TGG | + | chr4_1:8563894-8563913 | Msa0533530:intron | 40.0% | |
| CACTTCATTGGAACATTCTG+GGG | + | chr4_1:8563906-8563925 | Msa0533530:intron | 40.0% | |
| ATTGGCCGATTAAACGATCT+CGG | - | chr4_1:8563955-8563974 | None:intergenic | 40.0% | |
| TCATCCTATAGGGTTGTGAT+TGG | + | chr4_1:8564062-8564081 | Msa0533530:intron | 40.0% | |
| GATTTCACAGACAAACCTTC+AGG | - | chr4_1:8564197-8564216 | None:intergenic | 40.0% | |
| TTAACCTTCAAAGGCTCTCT+AGG | - | chr4_1:8564224-8564243 | None:intergenic | 40.0% | |
| TGTAGTTATTGCTGAGGCAT+TGG | + | chr4_1:8564286-8564305 | Msa0533530:intron | 40.0% | |
| ! | GTAGTTATTGCTGAGGCATT+GGG | + | chr4_1:8564287-8564306 | Msa0533530:intron | 40.0% |
| TGGGATCTTTGATATTCCTG+AGG | + | chr4_1:8564423-8564442 | Msa0533530:intron | 40.0% | |
| AACTGCGGTTAAGGTCAAAT+AGG | + | chr4_1:8564472-8564491 | Msa0533530:intron | 40.0% | |
| ! | GTGATTGTTTGCATTGGTGA+TGG | + | chr4_1:8564703-8564722 | Msa0533530:intron | 40.0% |
| GCACATCATAACTACTTGAG+AGG | + | chr4_1:8564745-8564764 | Msa0533530:intron | 40.0% | |
| CTGAGATTGCCAAAAAGATG+TGG | + | chr4_1:8564944-8564963 | Msa0533530:intron | 40.0% | |
| CGCACTTAAGGAAATTACAC+TGG | + | chr4_1:8565146-8565165 | Msa0533530:intron | 40.0% | |
| ! | ATGGTAGGTCTTTTGTGAAG+AGG | + | chr4_1:8565372-8565391 | Msa0533530:intron | 40.0% |
| CATTGAGGTGATTGTTCACA+AGG | + | chr4_1:8562985-8563004 | Msa0533530:CDS | 40.0% | |
| GACACTAGCAAAGATACTTG+AGG | + | chr4_1:8565475-8565494 | Msa0533530:intron | 40.0% | |
| !! | GAAACAGTGCCGTTTGATGA+AGG | - | chr4_1:8559688-8559707 | None:intergenic | 45.0% |
| !! | AAGCTAGGGATTGGGTTGAA+GGG | - | chr4_1:8559726-8559745 | None:intergenic | 45.0% |
| ! | GGGTTGATTCAGATGAAGCT+AGG | - | chr4_1:8559741-8559760 | None:intergenic | 45.0% |
| GCTTCATCTGAATCAACCCT+AGG | + | chr4_1:8559742-8559761 | Msa0533530:CDS | 45.0% | |
| AAGGTCAGGTTAAAGTCACC+GGG | - | chr4_1:8559823-8559842 | None:intergenic | 45.0% | |
| CAAGGTCAGGTTAAAGTCAC+CGG | - | chr4_1:8559824-8559843 | None:intergenic | 45.0% | |
| GAACCGAAGCTGAAAAACGT+CGG | + | chr4_1:8559862-8559881 | Msa0533530:CDS | 45.0% | |
| !! | CAACCGACGTTTTTCAGCTT+CGG | - | chr4_1:8559868-8559887 | None:intergenic | 45.0% |
| TGCTGTAACGAACTGAATGC+TGG | + | chr4_1:8559886-8559905 | Msa0533530:CDS | 45.0% | |
| AATGCTGGATATGCTGCTGA+TGG | + | chr4_1:8559901-8559920 | Msa0533530:CDS | 45.0% | |
| ATGCTGCTGATGGTTATGCA+AGG | + | chr4_1:8559911-8559930 | Msa0533530:CDS | 45.0% | |
| CTGATGGTTATGCAAGGTCT+AGG | + | chr4_1:8559917-8559936 | Msa0533530:CDS | 45.0% | |
| GATGGTTATGCAAGGTCTAG+GGG | + | chr4_1:8559919-8559938 | Msa0533530:CDS | 45.0% | |
| !! | TGGTTTGCCTGATTTTAGCC+AGG | + | chr4_1:8560095-8560114 | Msa0533530:CDS | 45.0% |
| TCTGGAAACACCTAAGTTCC+TGG | - | chr4_1:8560116-8560135 | None:intergenic | 45.0% | |
| AATAGTGACACTGGCATAGG+TGG | + | chr4_1:8560285-8560304 | Msa0533530:intron | 45.0% | |
| ATAGGCTGTGGTCAACAACT+TGG | + | chr4_1:8561085-8561104 | Msa0533530:intron | 45.0% | |
| GGAGACAAGGAAAATGGAAC+AGG | - | chr4_1:8561230-8561249 | None:intergenic | 45.0% | |
| GAGTAATCCAATGGGATTGG+AGG | + | chr4_1:8561346-8561365 | Msa0533530:CDS | 45.0% | |
| !! | GGCTACTAGTACTGGTTTCA+CGG | - | chr4_1:8561408-8561427 | None:intergenic | 45.0% |
| GTGAAACCAGTACTAGTAGC+CGG | + | chr4_1:8561407-8561426 | Msa0533530:CDS | 45.0% | |
| !!! | CGCTACTCTTAGTTTTGGAC+CGG | - | chr4_1:8561429-8561448 | None:intergenic | 45.0% |
| GCAGATGGCATGACAGAATA+CGG | - | chr4_1:8561497-8561516 | None:intergenic | 45.0% | |
| TCTGTCATGCCATCTGCTAA+AGG | + | chr4_1:8561500-8561519 | Msa0533530:CDS | 45.0% | |
| ! | TGCATTTTGTGCCGAGATTG+TGG | + | chr4_1:8561580-8561599 | Msa0533530:CDS | 45.0% |
| TTGTGCCGAGATTGTGGAAT+CGG | + | chr4_1:8561586-8561605 | Msa0533530:CDS | 45.0% | |
| ! | ATCAGCCGATTCCACAATCT+CGG | - | chr4_1:8561594-8561613 | None:intergenic | 45.0% |
| GCTGATGCATACCTATTTGC+TGG | + | chr4_1:8561608-8561627 | Msa0533530:CDS | 45.0% | |
| TTTCCGATCACAACCCTATC+AGG | - | chr4_1:8561707-8561726 | None:intergenic | 45.0% | |
| GATAGGGTTGTGATCGGAAA+TGG | + | chr4_1:8561707-8561726 | Msa0533530:CDS | 45.0% | |
| TGAACCTAGAGAGCCTTTGA+GGG | + | chr4_1:8561856-8561875 | Msa0533530:CDS | 45.0% | |
| TTAACCCTCAAAGGCTCTCT+AGG | - | chr4_1:8561863-8561882 | None:intergenic | 45.0% | |
| CCTCAATGCAACTGCGATTA+AGG | - | chr4_1:8562119-8562138 | None:intergenic | 45.0% | |
| CCTTAATCGCAGTTGCATTG+AGG | + | chr4_1:8562116-8562135 | Msa0533530:intron | 45.0% | |
| CAGTTGCATTGAGGTCACAT+AGG | + | chr4_1:8562125-8562144 | Msa0533530:intron | 45.0% | |
| GGTTCAATTGGATGGTCTGT+TGG | + | chr4_1:8562286-8562305 | Msa0533530:CDS | 45.0% | |
| TGGTTATGCTCAAGCTGTTC+CGG | + | chr4_1:8562318-8562337 | Msa0533530:CDS | 45.0% | |
| AAGCGAGTGATTGCTTGCAT+TGG | + | chr4_1:8562343-8562362 | Msa0533530:CDS | 45.0% | |
| GTTTCCACAATGCTGAGATG+TGG | + | chr4_1:8562569-8562588 | Msa0533530:CDS | 45.0% | |
| ! | GAACTGGAATTACACTGGCT+TGG | + | chr4_1:8562676-8562695 | Msa0533530:CDS | 45.0% |
| GATGCTATCCACAATGGTCA+AGG | + | chr4_1:8562701-8562720 | Msa0533530:CDS | 45.0% | |
| AGGAAATTGCTGGACCACTA+AGG | + | chr4_1:8562721-8562740 | Msa0533530:CDS | 45.0% | |
| AAATGTGTCAGTGTCGTGTC+CGG | - | chr4_1:8562830-8562849 | None:intergenic | 45.0% | |
| GAAGCAATTCAGACAGCAAC+AGG | + | chr4_1:8562938-8562957 | Msa0533530:CDS | 45.0% | |
| AGTTGCTTGAATGGGGATCA+AGG | + | chr4_1:8563023-8563042 | Msa0533530:CDS | 45.0% | |
| GTTGCTTGAATGGGGATCAA+GGG | + | chr4_1:8563024-8563043 | Msa0533530:CDS | 45.0% | |
| GAAGTTCACTGAGGATTTGG+AGG | - | chr4_1:8563070-8563089 | None:intergenic | 45.0% | |
| CTGTGCCGAGATCGTTTAAT+CGG | + | chr4_1:8563947-8563966 | Msa0533530:intron | 45.0% | |
| TGAACCTAGAGAGCCTTTGA+AGG | + | chr4_1:8561856-8561875 | Msa0533530:CDS | 45.0% | |
| GGATCAATTGGATGGTCTGT+CGG | + | chr4_1:8564637-8564656 | Msa0533530:intron | 45.0% | |
| TGGTTATGCTCAAGCTGTTC+CGG | + | chr4_1:8562318-8562337 | Msa0533530:CDS | 45.0% | |
| ACAATCACTGATCACTTCCC+CGG | - | chr4_1:8564691-8564710 | None:intergenic | 45.0% | |
| !! | CATTGGTGATGGAAGTTTCC+AGG | + | chr4_1:8564714-8564733 | Msa0533530:intron | 45.0% |
| TATGATGTGCAAGTCGAACC+TGG | - | chr4_1:8564735-8564754 | None:intergenic | 45.0% | |
| TTAACCCTCAAAGGCTCTCT+AGG | - | chr4_1:8561863-8561882 | None:intergenic | 45.0% | |
| CAGCAATGACAGCAGTTCTT+TGG | - | chr4_1:8564892-8564911 | None:intergenic | 45.0% | |
| ! | TTGGTTGATGCTATCCACGA+TGG | + | chr4_1:8565170-8565189 | Msa0533530:intron | 45.0% |
| AGCAATTTCCTTGACCATCG+TGG | - | chr4_1:8565187-8565206 | None:intergenic | 45.0% | |
| ACGATGGTCAAGGAAATTGC+TGG | + | chr4_1:8565186-8565205 | Msa0533530:intron | 45.0% | |
| AGGAAATTGCTGGACCACTA+AGG | + | chr4_1:8562721-8562740 | Msa0533530:CDS | 45.0% | |
| GTCGTATCCTGAGTTTGTGT+CGG | - | chr4_1:8565288-8565307 | None:intergenic | 45.0% | |
| GATGCAATTCAGACAGCAAC+AGG | + | chr4_1:8565403-8565422 | Msa0533530:intron | 45.0% | |
| GACAGCAACAGGACAAAAGA+AGG | + | chr4_1:8565414-8565433 | Msa0533530:intron | 45.0% | |
| !! | TATTATTGTAATATTATAAT+TGG | + | chr4_1:8560738-8560757 | Msa0533530:intron | 5.0% |
| !!! | TTTTATTTTTTTTTTTATCA+AGG | + | chr4_1:8563643-8563662 | Msa0533530:intron | 5.0% |
| !! | TTAATTTATATATTTGATTA+TGG | + | chr4_1:8565353-8565372 | Msa0533530:intron | 5.0% |
| TGCATGATTCGAGGGATCCT+AGG | - | chr4_1:8559636-8559655 | None:intergenic | 50.0% | |
| !! | AGCTAGGGATTGGGTTGAAG+GGG | - | chr4_1:8559725-8559744 | None:intergenic | 50.0% |
| !! | GAAGCTAGGGATTGGGTTGA+AGG | - | chr4_1:8559727-8559746 | None:intergenic | 50.0% |
| AGGTCAGGTTAAAGTCACCG+GGG | - | chr4_1:8559822-8559841 | None:intergenic | 50.0% | |
| TTATGCAAGGTCTAGGGGTG+TGG | + | chr4_1:8559924-8559943 | Msa0533530:CDS | 50.0% | |
| ! | TATGCAAGGTCTAGGGGTGT+GGG | + | chr4_1:8559925-8559944 | Msa0533530:CDS | 50.0% |
| CCTGGTAGCAAGTAACAGTC+TGG | - | chr4_1:8560134-8560153 | None:intergenic | 50.0% | |
| ! | CCAGACTGTTACTTGCTACC+AGG | + | chr4_1:8560131-8560150 | Msa0533530:CDS | 50.0% |
| GCTGAAAGTAGGGTGAGGAA+TGG | - | chr4_1:8561201-8561220 | None:intergenic | 50.0% | |
| CAGGTTCACGGCTGAAAGTA+GGG | - | chr4_1:8561211-8561230 | None:intergenic | 50.0% | |
| ACAGGTTCACGGCTGAAAGT+AGG | - | chr4_1:8561212-8561231 | None:intergenic | 50.0% | |
| TTTGGACCGGCTACTAGTAC+TGG | - | chr4_1:8561416-8561435 | None:intergenic | 50.0% | |
| CAGCCTGATAGGGTTGTGAT+CGG | + | chr4_1:8561701-8561720 | Msa0533530:CDS | 50.0% | |
| CTGAACCTAGAGAGCCTTTG+AGG | + | chr4_1:8561855-8561874 | Msa0533530:CDS | 50.0% | |
| ACTGCTGTTATTGCCGAGAC+AGG | + | chr4_1:8561923-8561942 | Msa0533530:CDS | 50.0% | |
| CTGCTGTTATTGCCGAGACA+GGG | + | chr4_1:8561924-8561943 | Msa0533530:CDS | 50.0% | |
| TGCTGTTATTGCCGAGACAG+GGG | + | chr4_1:8561925-8561944 | Msa0533530:CDS | 50.0% | |
| AAACCATGAGTCCCCTGTCT+CGG | - | chr4_1:8561939-8561958 | None:intergenic | 50.0% | |
| TGGTCTGTTGGTGCAACTCT+TGG | + | chr4_1:8562298-8562317 | Msa0533530:CDS | 50.0% | |
| CAAGCAATCACTCGCTTCTC+CGG | - | chr4_1:8562340-8562359 | None:intergenic | 50.0% | |
| ! | GTGATTGCTTGCATTGGCGA+TGG | + | chr4_1:8562349-8562368 | Msa0533530:CDS | 50.0% |
| CATTGGCGATGGAAGTTTCC+AGG | + | chr4_1:8562360-8562379 | Msa0533530:CDS | 50.0% | |
| CTGTCCACATCTCAGCATTG+TGG | - | chr4_1:8562576-8562595 | None:intergenic | 50.0% | |
| !! | TACAGAGGCATCAATGCCTC+AGG | - | chr4_1:8564442-8564461 | None:intergenic | 50.0% |
| CAGTTGCATCGAGGTTACAG+AGG | - | chr4_1:8564457-8564476 | None:intergenic | 50.0% | |
| CTGTAACCTCGATGCAACTG+CGG | + | chr4_1:8564457-8564476 | Msa0533530:intron | 50.0% | |
| GGTTATGCTCAAGCTGTTCC+GGG | + | chr4_1:8562319-8562338 | Msa0533530:CDS | 50.0% | |
| GTTATGCTCAAGCTGTTCCG+GGG | + | chr4_1:8562320-8562339 | Msa0533530:CDS | 50.0% | |
| TCTCTAGGTTCGGACTTCAC+AGG | - | chr4_1:8564822-8564841 | None:intergenic | 50.0% | |
| CCTCAAAGGCTCTCTAGGTT+CGG | - | chr4_1:8561858-8561877 | None:intergenic | 50.0% | |
| CGAACCTAGAGAGCCTTTGA+GGG | + | chr4_1:8564830-8564849 | Msa0533530:intron | 50.0% | |
| ACTGCTGTCATTGCTGTGAC+AGG | + | chr4_1:8564896-8564915 | Msa0533530:intron | 50.0% | |
| CTGCTGTCATTGCTGTGACA+GGG | + | chr4_1:8564897-8564916 | Msa0533530:intron | 50.0% | |
| TGCTGTCATTGCTGTGACAG+GGG | + | chr4_1:8564898-8564917 | Msa0533530:intron | 50.0% | |
| CGAACACACTTGCGCACTTA+AGG | + | chr4_1:8565134-8565153 | Msa0533530:intron | 50.0% | |
| GATGCTATCCACGATGGTCA+AGG | + | chr4_1:8565176-8565195 | Msa0533530:intron | 50.0% | |
| !! | TGAAGCACCGACACAAACTC+AGG | + | chr4_1:8565278-8565297 | Msa0533530:intron | 50.0% |
| CAGGTTAAAGTCACCGGGGA+CGG | - | chr4_1:8559818-8559837 | None:intergenic | 55.0% | |
| TCAGCTTCGGTTCAGCGATC+AGG | - | chr4_1:8559855-8559874 | None:intergenic | 55.0% | |
| ! | GGGGCTGTAACCGCAAGTTT+TGG | + | chr4_1:8560433-8560452 | Msa0533530:intron | 55.0% |
| TCACGGCTGAAAGTAGGGTG+AGG | - | chr4_1:8561206-8561225 | None:intergenic | 55.0% | |
| ACTGCTGCCTCCAATCCCAT+TGG | - | chr4_1:8561356-8561375 | None:intergenic | 55.0% | |
| AATGGGATTGGAGGCAGCAG+TGG | + | chr4_1:8561355-8561374 | Msa0533530:CDS | 55.0% | |
| CTGCTGCCTCCAATCCCATT+TGG | - | chr4_1:8561355-8561374 | None:intergenic | 55.0% | |
| AATGGGATTGGAGGCAGCAG+TGG | + | chr4_1:8561355-8561374 | Msa0533530:CDS | 55.0% | |
| ! | CGCTTGCGAAGTGCCTTAAG+AGG | + | chr4_1:8564132-8564151 | Msa0533530:intron | 55.0% |
| !! | TTGCTGAGGCATTGGGCTCT+TGG | + | chr4_1:8564294-8564313 | Msa0533530:intron | 55.0% |
| CCTTAACCGCAGTTGCATCG+AGG | - | chr4_1:8564466-8564485 | None:intergenic | 55.0% | |
| CCTCGATGCAACTGCGGTTA+AGG | + | chr4_1:8564463-8564482 | Msa0533530:intron | 55.0% | |
| TGGTCTGTCGGTGCAACTCT+TGG | + | chr4_1:8564649-8564668 | Msa0533530:intron | 55.0% | |
| CCGAACCTAGAGAGCCTTTG+AGG | + | chr4_1:8564829-8564848 | Msa0533530:intron | 55.0% | |
| TTGCTGTGACAGGGGACTCT+TGG | + | chr4_1:8564906-8564925 | Msa0533530:intron | 55.0% | |
| AGTGCGCAAGTGTGTTCGTG+CGG | - | chr4_1:8565132-8565151 | None:intergenic | 55.0% | |
| CTTCCACTAGTCGCCGTGCT+AGG | - | chr4_1:8559774-8559793 | None:intergenic | 60.0% | |
| GCACGGCGACTAGTGGAAGT+CGG | + | chr4_1:8559775-8559794 | Msa0533530:CDS | 60.0% | |
| ACCGACATCTTCACCGTCCC+CGG | + | chr4_1:8559802-8559821 | Msa0533530:CDS | 60.0% | |
| ACCGGGGACGGTGAAGATGT+CGG | - | chr4_1:8559806-8559825 | None:intergenic | 60.0% | |
| TCAGGTGGTCGAGCAAGGTC+AGG | - | chr4_1:8559837-8559856 | None:intergenic | 60.0% | |
| AGCGATCAGGTGGTCGAGCA+AGG | - | chr4_1:8559842-8559861 | None:intergenic | 60.0% | |
| GCTTCGGTTCAGCGATCAGG+TGG | - | chr4_1:8559852-8559871 | None:intergenic | 60.0% | |
| TTGCCGAGACAGGGGACTCA+TGG | + | chr4_1:8561933-8561952 | Msa0533530:CDS | 60.0% | |
| GTGCGCAAGTGTGTTCGTGC+GGG | - | chr4_1:8565131-8565150 | None:intergenic | 60.0% | |
| CCGTGCTAGGTGGCTGCCTA+GGG | - | chr4_1:8559761-8559780 | None:intergenic | 65.0% | |
| CCCTAGGCAGCCACCTAGCA+CGG | + | chr4_1:8559758-8559777 | Msa0533530:CDS | 65.0% | |
| CCACTAGTCGCCGTGCTAGG+TGG | - | chr4_1:8559771-8559790 | None:intergenic | 65.0% | |
| CCACCTAGCACGGCGACTAG+TGG | + | chr4_1:8559768-8559787 | Msa0533530:CDS | 65.0% | |
| GGCAGCAGTGGAAGCAGCTG+CGG | + | chr4_1:8561367-8561386 | Msa0533530:CDS | 65.0% | |
| ! | CGCTCGCGAAGCGCCTTAAG+AGG | + | chr4_1:8561771-8561790 | Msa0533530:CDS | 65.0% |
| GCCGTGCTAGGTGGCTGCCT+AGG | - | chr4_1:8559762-8559781 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 8559549 | 8565633 | 8559549 | ID=Msa0533530;Name=Msa0533530 |
| chr4_1 | mRNA | 8559549 | 8565633 | 8559549 | ID=Msa0533530-mRNA-1;Parent=Msa0533530;Name=Msa0533530-mRNA-1;_AED=0.20;_eAED=0.20;_QI=73|1|1|1|0.83|0.71|7|228|607 |
| chr4_1 | exon | 8559549 | 8560152 | 8559549 | ID=Msa0533530-mRNA-1:exon:2841;Parent=Msa0533530-mRNA-1 |
| chr4_1 | exon | 8561089 | 8561252 | 8561089 | ID=Msa0533530-mRNA-1:exon:2842;Parent=Msa0533530-mRNA-1 |
| chr4_1 | exon | 8561343 | 8561993 | 8561343 | ID=Msa0533530-mRNA-1:exon:2843;Parent=Msa0533530-mRNA-1 |
| chr4_1 | exon | 8562264 | 8562381 | 8562264 | ID=Msa0533530-mRNA-1:exon:2844;Parent=Msa0533530-mRNA-1 |
| chr4_1 | exon | 8562554 | 8562742 | 8562554 | ID=Msa0533530-mRNA-1:exon:2845;Parent=Msa0533530-mRNA-1 |
| chr4_1 | exon | 8562914 | 8563166 | 8562914 | ID=Msa0533530-mRNA-1:exon:2846;Parent=Msa0533530-mRNA-1 |
| chr4_1 | exon | 8565488 | 8565633 | 8565488 | ID=Msa0533530-mRNA-1:exon:2847;Parent=Msa0533530-mRNA-1 |
| chr4_1 | five_prime_UTR | 8559549 | 8559621 | 8559549 | ID=Msa0533530-mRNA-1:five_prime_utr;Parent=Msa0533530-mRNA-1 |
| chr4_1 | CDS | 8559622 | 8560152 | 8559622 | ID=Msa0533530-mRNA-1:cds;Parent=Msa0533530-mRNA-1 |
| chr4_1 | CDS | 8561089 | 8561252 | 8561089 | ID=Msa0533530-mRNA-1:cds;Parent=Msa0533530-mRNA-1 |
| chr4_1 | CDS | 8561343 | 8561993 | 8561343 | ID=Msa0533530-mRNA-1:cds;Parent=Msa0533530-mRNA-1 |
| chr4_1 | CDS | 8562264 | 8562381 | 8562264 | ID=Msa0533530-mRNA-1:cds;Parent=Msa0533530-mRNA-1 |
| chr4_1 | CDS | 8562554 | 8562742 | 8562554 | ID=Msa0533530-mRNA-1:cds;Parent=Msa0533530-mRNA-1 |
| chr4_1 | CDS | 8562914 | 8563084 | 8562914 | ID=Msa0533530-mRNA-1:cds;Parent=Msa0533530-mRNA-1 |
| chr4_1 | three_prime_UTR | 8563085 | 8563166 | 8563085 | ID=Msa0533530-mRNA-1:three_prime_utr;Parent=Msa0533530-mRNA-1 |
| chr4_1 | three_prime_UTR | 8565488 | 8565633 | 8565488 | ID=Msa0533530-mRNA-1:three_prime_utr;Parent=Msa0533530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
