Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0630200 | XP_003604737.1 | 98.682 | 607 | 8 | 0 | 1 | 607 | 1 | 607 | 0.0 | 1245 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0630200 | sp|Q9M040|PDC4_ARATH | 83.031 | 607 | 99 | 2 | 1 | 607 | 1 | 603 | 0.0 | 1059 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0630180 | Msa0630200 | 0.871171 | 8.374558e-67 | -8.615850e-47 |
| Msa0630200 | Msa0668270 | 0.825175 | 5.409795e-54 | -8.615850e-47 |
| Msa0533530 | Msa0630200 | 0.821423 | 4.070853e-53 | -8.615850e-47 |
| Msa0589790 | Msa0630200 | 0.824089 | 9.747783e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0630200 | MtrunA17_Chr4g0007071 | 98.682 | 607 | 8 | 0 | 1 | 607 | 1 | 607 | 0.0 | 1245 |
| Msa0630200 | MtrunA17_Chr5g0420011 | 98.517 | 607 | 9 | 0 | 1 | 607 | 1 | 607 | 0.0 | 1241 |
| Msa0630200 | MtrunA17_Chr7g0242961 | 85.832 | 607 | 82 | 3 | 1 | 607 | 1 | 603 | 0.0 | 1074 |
| Msa0630200 | MtrunA17_Chr7g0242981 | 82.566 | 608 | 86 | 4 | 1 | 607 | 1 | 589 | 0.0 | 1017 |
| Msa0630200 | MtrunA17_Chr2g0283471 | 79.094 | 574 | 120 | 0 | 34 | 607 | 9 | 582 | 0.0 | 960 |
| Msa0630200 | MtrunA17_Chr2g0279461 | 63.964 | 222 | 51 | 2 | 40 | 232 | 44 | 265 | 1.85e-97 | 298 |
| Msa0630200 | MtrunA17_Chr2g0279471 | 68.966 | 116 | 36 | 0 | 489 | 604 | 17 | 132 | 4.17e-53 | 177 |
| Msa0630200 | MtrunA17_Chr3g0132201 | 23.757 | 543 | 355 | 17 | 22 | 535 | 58 | 570 | 1.57e-22 | 102 |
| Msa0630200 | MtrunA17_Chr2g0290681 | 23.063 | 555 | 378 | 16 | 40 | 563 | 55 | 591 | 1.60e-18 | 89.4 |
| Msa0630200 | MtrunA17_Chr2g0281881 | 22.530 | 506 | 352 | 15 | 51 | 535 | 88 | 574 | 2.96e-17 | 85.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0630200 | AT5G01320.1 | 83.031 | 607 | 99 | 2 | 1 | 607 | 1 | 603 | 0.0 | 1059 |
| Msa0630200 | AT4G33070.1 | 82.266 | 609 | 104 | 4 | 1 | 607 | 1 | 607 | 0.0 | 1052 |
| Msa0630200 | AT5G54960.1 | 81.773 | 609 | 107 | 2 | 1 | 607 | 1 | 607 | 0.0 | 1044 |
| Msa0630200 | AT5G01330.1 | 82.968 | 593 | 97 | 3 | 17 | 607 | 2 | 592 | 0.0 | 1021 |
| Msa0630200 | AT3G48560.1 | 21.875 | 512 | 348 | 14 | 51 | 535 | 103 | 589 | 1.89e-15 | 80.5 |
Find 161 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGCCTAATTCTAATGATTT+TGG | 0.114847 | 4_3:-11895413 | Msa0630200:CDS |
| ATTAAGCTGAGATTACTTAA+AGG | 0.221242 | 4_3:-11892378 | Msa0630200:three_prime_UTR |
| TACTTTGGAGTCAAGGAAAA+TGG | 0.233278 | 4_3:+11894364 | None:intergenic |
| AACATTTCATTGGAACGTTT+TGG | 0.238749 | 4_3:-11894047 | Msa0630200:CDS |
| CTGCTTATGAGAATTATTTC+AGG | 0.247181 | 4_3:-11893789 | Msa0630200:CDS |
| CGATTATTGTTCAGCCTGAT+AGG | 0.276114 | 4_3:-11893900 | Msa0630200:CDS |
| CATTGGTGATGGAAGTTTCC+AGG | 0.279678 | 4_3:-11893137 | Msa0630200:intron |
| AGAATTCTTCATCATACTAT+TGG | 0.294152 | 4_3:-11895383 | Msa0630200:CDS |
| AAGCATAAACAATCCTTCTT+TGG | 0.294164 | 4_3:+11892554 | None:intergenic |
| TCTGAAGTTCACTGAGGATT+AGG | 0.300037 | 4_3:+11892446 | None:intergenic |
| GTCCCAAAATCATTAGAATT+AGG | 0.303299 | 4_3:+11895410 | None:intergenic |
| GCAGATGGCATGACGGAATA+TGG | 0.315658 | 4_3:+11894096 | None:intergenic |
| CAGCTTATGCTTATGTAAAC+AGG | 0.328846 | 4_3:+11894433 | None:intergenic |
| CGGATATGCTCAAGCTGTTC+CGG | 0.328908 | 4_3:-11893179 | Msa0630200:CDS |
| AAGAAGATTAATTACCTTAG+TGG | 0.336330 | 4_3:+11892771 | None:intergenic |
| TGAAAATAGGTCCAGCAAAT+AGG | 0.336734 | 4_3:+11893971 | None:intergenic |
| ATTACTTACCCACATCCTTT+TGG | 0.345387 | 4_3:+11893610 | None:intergenic |
| GATTTCAAAGGCAAACCTTC+AGG | 0.356531 | 4_3:+11893757 | None:intergenic |
| TCTCCAATCACAACCCTATC+AGG | 0.360164 | 4_3:+11893886 | None:intergenic |
| TATGAGTTCCAGATGCAATA+TGG | 0.362998 | 4_3:-11893232 | Msa0630200:CDS |
| CAGATGCAATATGGTTCAAT+TGG | 0.366605 | 4_3:-11893223 | Msa0630200:CDS |
| GAACTGTAATCATTGAAAAT+AGG | 0.370893 | 4_3:+11893958 | None:intergenic |
| GAGGATCACAAACATTTCAT+TGG | 0.372783 | 4_3:-11894057 | Msa0630200:CDS |
| AAGCAGTATTGTTCCTCTTA+AGG | 0.376245 | 4_3:+11893806 | None:intergenic |
| CAGTTCTTGATAACATTGTA+TGG | 0.391023 | 4_3:+11892847 | None:intergenic |
| GCTGATGCATACCTATTTGC+TGG | 0.395610 | 4_3:-11893982 | Msa0630200:CDS |
| GAAGCTAGGGATTGGGTTGA+AGG | 0.395680 | 4_3:+11895734 | None:intergenic |
| ATTGGAGATGGTCCTACATT+TGG | 0.399314 | 4_3:-11893871 | Msa0630200:CDS |
| CTGAACCTAGAGAGCCTTTG+AGG | 0.417588 | 4_3:-11893735 | Msa0630200:CDS |
| TCAGCTTCGGTTCAGCGATC+AGG | 0.418349 | 4_3:+11895606 | None:intergenic |
| CAATTGAACCATATTGCATC+TGG | 0.423310 | 4_3:+11893224 | None:intergenic |
| TCTGGAAACACCTAAGTTCC+TGG | 0.424227 | 4_3:+11895345 | None:intergenic |
| TTGCCAGTGATTTGTATTGT+TGG | 0.427170 | 4_3:-11895437 | Msa0630200:CDS |
| TAAAGGATACTTATGTTTGA+GGG | 0.429052 | 4_3:-11892361 | Msa0630200:three_prime_UTR |
| CAAGCAATCACTCGCTTCTC+CGG | 0.431538 | 4_3:+11893160 | None:intergenic |
| TAGCAAAGAGTTGCTTGAAT+GGG | 0.434683 | 4_3:-11892501 | Msa0630200:CDS |
| CTGATGGATATGCAAGGTCT+AGG | 0.436168 | 4_3:-11895541 | Msa0630200:CDS |
| TTCAGATGAAGCTAGGGATT+GGG | 0.437372 | 4_3:+11895727 | None:intergenic |
| TTAAAGGATACTTATGTTTG+AGG | 0.438544 | 4_3:-11892362 | Msa0630200:three_prime_UTR |
| AGTTGCTTGAATGGGGATCA+AGG | 0.443953 | 4_3:-11892493 | Msa0630200:CDS |
| CTGAAATTGCCAAAAGGATG+TGG | 0.445246 | 4_3:-11893619 | Msa0630200:CDS |
| AGCGTGATTAATGCAATTGC+TGG | 0.447921 | 4_3:-11895476 | Msa0630200:CDS |
| CATACAATGTTATCAAGAAC+TGG | 0.450936 | 4_3:-11892846 | Msa0630200:CDS |
| CTAGCAAAGAGTTGCTTGAA+TGG | 0.452164 | 4_3:-11892502 | Msa0630200:CDS |
| GGAGTCAAGGAAAATGGAAC+AGG | 0.453218 | 4_3:+11894370 | None:intergenic |
| TTGTGCCGAGATTGTGGAAT+CGG | 0.455522 | 4_3:-11894004 | Msa0630200:CDS |
| CTAAGTTCCTGGCTAAAATC+AGG | 0.456762 | 4_3:+11895356 | None:intergenic |
| ATTCAGATGAAGCTAGGGAT+TGG | 0.458364 | 4_3:+11895726 | None:intergenic |
| ACTGCTGTTATTGCCGAGAC+AGG | 0.459219 | 4_3:-11893667 | Msa0630200:CDS |
| ACCGGGGACGGTGAAAATAT+CGG | 0.459953 | 4_3:+11895655 | None:intergenic |
| TTCGGACCGGCTACTAGTAC+TGG | 0.460290 | 4_3:+11894177 | None:intergenic |
| GGCAGCAGTGGAAGCAGCTG+CGG | 0.462599 | 4_3:-11894223 | Msa0630200:CDS |
| CCAGACTGTTACTTGCTACC+AGG | 0.464384 | 4_3:-11895327 | Msa0630200:intron |
| CATTGAGGTGATTGTTCACA+AGG | 0.471803 | 4_3:-11892531 | Msa0630200:CDS |
| ATGAAATGTTTGTGATCCTC+AGG | 0.472515 | 4_3:+11894060 | None:intergenic |
| ATTGTTAATCAAGAAGATTA+TGG | 0.473966 | 4_3:+11892906 | None:intergenic |
| GTTGTTACATTTACTGTTGG+TGG | 0.474317 | 4_3:-11895503 | Msa0630200:CDS |
| CAGTGATTTGTATTGTTGGT+GGG | 0.474712 | 4_3:-11895433 | Msa0630200:CDS |
| CACTTGCGAAGCGCCTTAAG+AGG | 0.476308 | 4_3:-11893819 | Msa0630200:CDS |
| CAAGGTCAGGTTAAAGTCAC+CGG | 0.479761 | 4_3:+11895637 | None:intergenic |
| TGCTGTAACGAACTGAATGC+TGG | 0.480708 | 4_3:-11895572 | Msa0630200:CDS |
| ATATGCAAGGTCTAGGGGTG+TGG | 0.482988 | 4_3:-11895534 | Msa0630200:CDS |
| TTAACCCTCAAAGGCTCTCT+AGG | 0.484853 | 4_3:+11893730 | None:intergenic |
| TTGTTACATTTACTGTTGGT+GGG | 0.485744 | 4_3:-11895502 | Msa0630200:CDS |
| GAAGCAATTGAGACAGCAAC+AGG | 0.485883 | 4_3:-11892578 | Msa0630200:CDS |
| ATTGAGTAATCCAATGGGAT+TGG | 0.486444 | 4_3:-11894247 | Msa0630200:CDS |
| ACTGCTGCCTCCAATCCCAT+TGG | 0.487915 | 4_3:+11894237 | None:intergenic |
| CCTGGTAGCAAGTAACAGTC+TGG | 0.488780 | 4_3:+11895327 | None:intergenic |
| TGCTACTCTTAGTTTCGGAC+CGG | 0.492737 | 4_3:+11894164 | None:intergenic |
| AAGCTAGGGATTGGGTTGAA+GGG | 0.497192 | 4_3:+11895735 | None:intergenic |
| TTCAATGATTACAGTTCCGT+TGG | 0.497624 | 4_3:-11893952 | Msa0630200:CDS |
| ACAATGGTCAAGGAAATTGC+TGG | 0.500572 | 4_3:-11892795 | Msa0630200:CDS |
| TGCAATATGGTTCAATTGGA+TGG | 0.502043 | 4_3:-11893219 | Msa0630200:CDS |
| CCAGTGATTTGTATTGTTGG+TGG | 0.502339 | 4_3:-11895434 | Msa0630200:CDS |
| TGATGGATATGCAAGGTCTA+GGG | 0.503579 | 4_3:-11895540 | Msa0630200:CDS |
| AAAATCTTACTTTGGAGTCA+AGG | 0.503703 | 4_3:+11894357 | None:intergenic |
| TCCGTCATGCCATCTGCTAA+AGG | 0.505379 | 4_3:-11894090 | Msa0630200:CDS |
| CAGCCTGATAGGGTTGTGAT+TGG | 0.505425 | 4_3:-11893889 | Msa0630200:CDS |
| AGCAATTTCCTTGACCATTG+TGG | 0.508734 | 4_3:+11892797 | None:intergenic |
| GAACTGGAATTACACTGGCT+TGG | 0.508806 | 4_3:-11892830 | Msa0630200:CDS |
| TAACATTGTATGGTCCATCA+TGG | 0.509244 | 4_3:+11892857 | None:intergenic |
| GCCGTGCTAGGTGACTTCCT+AGG | 0.509412 | 4_3:+11895699 | None:intergenic |
| GGGTTGATTCAGATGAAGCT+AGG | 0.509627 | 4_3:+11895720 | None:intergenic |
| AAATAACCATTCAAAAGCAT+TGG | 0.510545 | 4_3:+11892256 | None:intergenic |
| TGCATGATTCGAGGGATCCT+AGG | 0.513172 | 4_3:+11895825 | None:intergenic |
| GGTTCAATTGGATGGTCTGT+TGG | 0.514958 | 4_3:-11893211 | Msa0630200:CDS |
| TCAGGTGGTCGAGCAAGGTC+AGG | 0.515021 | 4_3:+11895624 | None:intergenic |
| CCGTGCTAGGTGACTTCCTA+GGG | 0.516328 | 4_3:+11895700 | None:intergenic |
| TATGCAAGGTCTAGGGGTGT+GGG | 0.518468 | 4_3:-11895533 | Msa0630200:CDS |
| ACAGGTTCGCGACTGAAAGT+AGG | 0.519422 | 4_3:+11894388 | None:intergenic |
| TGAACCTAGAGAGCCTTTGA+GGG | 0.523049 | 4_3:-11893734 | Msa0630200:CDS |
| TGACAGATTGAGTAATCCAA+TGG | 0.525959 | 4_3:-11894253 | Msa0630200:intron |
| TTGCCGAGACAGGGGACTCA+TGG | 0.526361 | 4_3:-11893657 | Msa0630200:CDS |
| GATTATTGTTCAGCCTGATA+GGG | 0.526387 | 4_3:-11893899 | Msa0630200:CDS |
| GACAGATTGAGTAATCCAAT+GGG | 0.528687 | 4_3:-11894252 | Msa0630200:intron |
| ATAACAACACCTTCATCAAA+CGG | 0.529906 | 4_3:-11895782 | Msa0630200:CDS |
| AGCTAGGGATTGGGTTGAAG+GGG | 0.531081 | 4_3:+11895736 | None:intergenic |
| CTTCCACTAGTCGCCGTGCT+AGG | 0.532807 | 4_3:+11895687 | None:intergenic |
| AGGAAATTGCTGGACCACTA+AGG | 0.533010 | 4_3:-11892785 | Msa0630200:intron |
| ATAGGCTGTGGTCAACAACT+TGG | 0.534954 | 4_3:-11894512 | Msa0630200:intron |
| TGGTCTGTTGGTGCAACTCT+CGG | 0.535873 | 4_3:-11893199 | Msa0630200:CDS |
| GAGTAATCCAATGGGATTGG+AGG | 0.536971 | 4_3:-11894244 | Msa0630200:CDS |
| CAAAAGCTGAAATTGCCAAA+AGG | 0.537401 | 4_3:-11893625 | Msa0630200:CDS |
| GGAATTAGTCCTTTAGCAGA+TGG | 0.539613 | 4_3:+11894081 | None:intergenic |
| CAGGTTCGCGACTGAAAGTA+GGG | 0.539662 | 4_3:+11894389 | None:intergenic |
| ATCTTCTTGATTAACAATGG+TGG | 0.543934 | 4_3:-11892901 | Msa0630200:CDS |
| ATCAGCCGATTCCACAATCT+CGG | 0.548115 | 4_3:+11893999 | None:intergenic |
| GAAGTTCACTGAGGATTAGG+TGG | 0.550945 | 4_3:+11892449 | None:intergenic |
| GTGATTGCTTGCATTGGTGA+TGG | 0.552907 | 4_3:-11893148 | Msa0630200:CDS |
| AAAAGAACATTAACCCTCAA+AGG | 0.553752 | 4_3:+11893721 | None:intergenic |
| AATGGGATTGGAGGCAGCAG+TGG | 0.555789 | 4_3:-11894235 | Msa0630200:CDS |
| TGTGTTGTTACATTTACTGT+TGG | 0.555935 | 4_3:-11895506 | Msa0630200:CDS |
| GTTGCTTGAATGGGGATCAA+GGG | 0.556008 | 4_3:-11892492 | Msa0630200:CDS |
| GACAGCAACAGGACCAAAGA+AGG | 0.556311 | 4_3:-11892567 | Msa0630200:CDS |
| ATTGAAGTTGAAATCCATGA+TGG | 0.557098 | 4_3:-11892871 | Msa0630200:CDS |
| TCACCTAGCACGGCGACTAG+TGG | 0.559417 | 4_3:-11895690 | Msa0630200:CDS |
| GGTTGATTCAGATGAAGCTA+GGG | 0.561038 | 4_3:+11895721 | None:intergenic |
| CCCTAGGAAGTCACCTAGCA+CGG | 0.561934 | 4_3:-11895700 | Msa0630200:CDS |
| AAACCATGAGTCCCCTGTCT+CGG | 0.564220 | 4_3:+11893654 | None:intergenic |
| GATAGGGTTGTGATTGGAGA+TGG | 0.564456 | 4_3:-11893883 | Msa0630200:CDS |
| AGCGATCAGGTGGTCGAGCA+AGG | 0.564623 | 4_3:+11895619 | None:intergenic |
| CTGCTGTTATTGCCGAGACA+GGG | 0.566446 | 4_3:-11893666 | Msa0630200:CDS |
| ATGGTGATTTGCATGATTCG+AGG | 0.568880 | 4_3:+11895816 | None:intergenic |
| ATCAAAACACATCCAAATGT+AGG | 0.572453 | 4_3:+11893859 | None:intergenic |
| AAGCGAGTGATTGCTTGCAT+TGG | 0.574293 | 4_3:-11893154 | Msa0630200:CDS |
| AAGGTCAGGTTAAAGTCACC+GGG | 0.574556 | 4_3:+11895638 | None:intergenic |
| CAGGTTAAAGTCACCGGGGA+CGG | 0.576121 | 4_3:+11895643 | None:intergenic |
| GATGCTATCCACAATGGTCA+AGG | 0.577985 | 4_3:-11892805 | Msa0630200:CDS |
| GAAACAGTGCCGTTTGATGA+AGG | 0.578220 | 4_3:+11895773 | None:intergenic |
| ATAATCTTCTTGATTAACAA+TGG | 0.579911 | 4_3:-11892904 | Msa0630200:CDS |
| GTTGTTATTATGTCGTTGCA+TGG | 0.581178 | 4_3:+11895797 | None:intergenic |
| CCACCAACAATACAAATCAC+TGG | 0.581447 | 4_3:+11895434 | None:intergenic |
| GGATTGTTTATGCTTCATTG+AGG | 0.581782 | 4_3:-11892546 | Msa0630200:CDS |
| AAATGTTTAATTGAGTTGCA+TGG | 0.585765 | 4_3:-11892319 | Msa0630200:three_prime_UTR |
| GCTTCATCTGAATCAACCCT+AGG | 0.588476 | 4_3:-11895716 | Msa0630200:CDS |
| ATCAAGAACTGGAATTACAC+TGG | 0.595089 | 4_3:-11892835 | Msa0630200:CDS |
| TGGTGATTTGCATGATTCGA+GGG | 0.596910 | 4_3:+11895817 | None:intergenic |
| AATGCTGGATATGCTGCTGA+TGG | 0.598505 | 4_3:-11895557 | Msa0630200:CDS |
| TCCTTTAGCAGATGGCATGA+CGG | 0.599896 | 4_3:+11894089 | None:intergenic |
| ACTGAAAGTAGGGTGAGGAA+TGG | 0.602836 | 4_3:+11894399 | None:intergenic |
| CTGTCCACATCTCAGCATTG+TGG | 0.605032 | 4_3:+11892933 | None:intergenic |
| TCTCTAGGTTCAGATTTCAA+AGG | 0.609595 | 4_3:+11893745 | None:intergenic |
| GTGAAACCAGTACTAGTAGC+CGG | 0.613433 | 4_3:-11894183 | Msa0630200:CDS |
| GCTTCGGTTCAGCGATCAGG+TGG | 0.616013 | 4_3:+11895609 | None:intergenic |
| TGCTGTTATTGCCGAGACAG+GGG | 0.619008 | 4_3:-11893665 | Msa0630200:CDS |
| TTCAACATGGACACAAACCT+AGG | 0.622509 | 4_3:-11895842 | Msa0630200:exon |
| AGCAAAGAGTTGCTTGAATG+GGG | 0.623231 | 4_3:-11892500 | Msa0630200:CDS |
| TCGCGACTGAAAGTAGGGTG+AGG | 0.630951 | 4_3:+11894394 | None:intergenic |
| TGAAATTGCCAAAAGGATGT+GGG | 0.632720 | 4_3:-11893618 | Msa0630200:intron |
| TTATATGTAGGTGACAGCAC+AGG | 0.638117 | 4_3:-11892962 | Msa0630200:intron |
| AAGTTCACTGAGGATTAGGT+GGG | 0.639249 | 4_3:+11892450 | None:intergenic |
| AACAGTAAATGTAACAACAC+AGG | 0.641386 | 4_3:+11895508 | None:intergenic |
| GTGTCCACAATGCTGAGATG+TGG | 0.644135 | 4_3:-11892937 | Msa0630200:CDS |
| CAAAAGAAGTGAGTAACCAA+CGG | 0.655126 | 4_3:+11893936 | None:intergenic |
| TGCTAAAGGACTAATTCCTG+AGG | 0.659904 | 4_3:-11894076 | Msa0630200:CDS |
| GATGGATATGCAAGGTCTAG+GGG | 0.660780 | 4_3:-11895539 | Msa0630200:CDS |
| TAAATTTCTGAAGTTCACTG+AGG | 0.695310 | 4_3:+11892440 | None:intergenic |
| TTGGTTGATGCTATCCACAA+TGG | 0.702445 | 4_3:-11892811 | Msa0630200:CDS |
| GCACGGCGACTAGTGGAAGT+CGG | 0.702782 | 4_3:-11895683 | Msa0630200:CDS |
| ATGCTGCTGATGGATATGCA+AGG | 0.712084 | 4_3:-11895547 | Msa0630200:CDS |
| AGGTCAGGTTAAAGTCACCG+GGG | 0.791887 | 4_3:+11895639 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAAAAAAATAAAAAT+AGG | + | chr4_3:11892847-11892866 | None:intergenic | 0.0% |
| !!! | ATTTTTATTTTTTTATTTTT+AGG | - | chr4_3:11892847-11892866 | Msa0630200:CDS | 0.0% |
| !! | TTATAAAACTATTATTATCA+GGG | + | chr4_3:11892968-11892987 | None:intergenic | 10.0% |
| !! | TTTATAAAACTATTATTATC+AGG | + | chr4_3:11892969-11892988 | None:intergenic | 10.0% |
| !! | TTTCAAATCTTATAAGTAAA+AGG | + | chr4_3:11892919-11892938 | None:intergenic | 15.0% |
| !!! | TATAAAAAGTTTTCAAGTAT+AGG | - | chr4_3:11893102-11893121 | Msa0630200:intron | 15.0% |
| !! | TTGTAATATTATAATATGGT+TGG | - | chr4_3:11893271-11893290 | Msa0630200:intron | 15.0% |
| !! | AAATTATAATAAGACAGATT+TGG | + | chr4_3:11893329-11893348 | None:intergenic | 15.0% |
| !!! | AAATCTGTCTTATTATAATT+TGG | - | chr4_3:11893328-11893347 | Msa0630200:intron | 15.0% |
| !!! | AAGTAAAATCAATATTTTCA+AGG | - | chr4_3:11893371-11893390 | Msa0630200:intron | 15.0% |
| !!! | ATGTTTTCTAAATTATATGT+AGG | - | chr4_3:11895148-11895167 | Msa0630200:intron | 15.0% |
| !! | TTTATATATTTGATTATGGT+AGG | - | chr4_3:11895498-11895517 | Msa0630200:CDS | 15.0% |
| !!! | ATAAGATTTGGTTTACTATT+TGG | - | chr4_3:11893466-11893485 | Msa0630200:intron | 20.0% |
| !! | TTATGAGTAAAATCTTACTT+TGG | + | chr4_3:11893776-11893795 | None:intergenic | 20.0% |
| !!! | TCTTAATTTCATTTTTGACT+TGG | - | chr4_3:11893818-11893837 | Msa0630200:CDS | 20.0% |
| !!! | TAGAATTTGATTTTTGGTAT+TGG | - | chr4_3:11894541-11894560 | Msa0630200:intron | 20.0% |
| !! | CATAATAGAAACAGTTTAAT+CGG | + | chr4_3:11895131-11895150 | None:intergenic | 20.0% |
| !! | ATTGTTAATCAAGAAGATTA+TGG | + | chr4_3:11895219-11895238 | None:intergenic | 20.0% |
| !! | ATAATCTTCTTGATTAACAA+TGG | - | chr4_3:11895218-11895237 | Msa0630200:intron | 20.0% |
| !!! | AGCAAAAATTAATTTTTGAG+AGG | + | chr4_3:11895394-11895413 | None:intergenic | 20.0% |
| !!! | CTTTTGAATGGTTATTTTAT+AGG | - | chr4_3:11895872-11895891 | Msa0630200:five_prime_UTR | 20.0% |
| !!! | AAAGTTTTTTGATGTGTTTG+AGG | + | chr4_3:11892245-11892264 | None:intergenic | 25.0% |
| ! | AGAATTCTTCATCATACTAT+TGG | - | chr4_3:11892739-11892758 | Msa0630200:intron | 25.0% |
| ! | TTTGAAAAAAATAGTGACAC+TGG | - | chr4_3:11892932-11892951 | Msa0630200:CDS | 25.0% |
| ! | ATGTATTATTGTTGTGTTGT+TGG | - | chr4_3:11893018-11893037 | Msa0630200:intron | 25.0% |
| !!! | AAAGTTTTCAAGTATAGGTT+CGG | - | chr4_3:11893107-11893126 | Msa0630200:intron | 25.0% |
| ! | ATATGATTGCTCAATTTGAA+TGG | - | chr4_3:11893431-11893450 | Msa0630200:intron | 25.0% |
| ! | AAACCAAATCTTATCGAATA+TGG | + | chr4_3:11893460-11893479 | None:intergenic | 25.0% |
| !!! | CTCATAAATCTGCATTTTTT+TGG | - | chr4_3:11893522-11893541 | Msa0630200:intron | 25.0% |
| ! | ATTGATTGACTGTGTTAAAA+TGG | - | chr4_3:11893565-11893584 | Msa0630200:intron | 25.0% |
| ! | TAAAATGGCTTATATGTACT+TGG | - | chr4_3:11893580-11893599 | Msa0630200:intron | 25.0% |
| !! | TATGTACTTGGTTTGATTAT+AGG | - | chr4_3:11893592-11893611 | Msa0630200:intron | 25.0% |
| ! | AATCTGTCAAAAGAAGTTAT+TGG | + | chr4_3:11893858-11893877 | None:intergenic | 25.0% |
| ! | GAACTGTAATCATTGAAAAT+AGG | + | chr4_3:11894167-11894186 | None:intergenic | 25.0% |
| !!! | AGCTTCTAGAATTTGATTTT+TGG | - | chr4_3:11894535-11894554 | Msa0630200:intron | 25.0% |
| !!! | CGTAGCATATTTTGATAAAA+AGG | - | chr4_3:11894854-11894873 | Msa0630200:intron | 25.0% |
| ! | AAAAATGTGCTAGGAAAATT+TGG | + | chr4_3:11895078-11895097 | None:intergenic | 25.0% |
| ! | GTATTATTAAGTAGAAGCTT+AGG | + | chr4_3:11895104-11895123 | None:intergenic | 25.0% |
| ! | AAGAAGATTAATTACCTTAG+TGG | + | chr4_3:11895354-11895373 | None:intergenic | 25.0% |
| ! | ATTAAGCTGAGATTACTTAA+AGG | - | chr4_3:11895744-11895763 | Msa0630200:CDS | 25.0% |
| ! | TTAAAGGATACTTATGTTTG+AGG | - | chr4_3:11895760-11895779 | Msa0630200:CDS | 25.0% |
| ! | TAAAGGATACTTATGTTTGA+GGG | - | chr4_3:11895761-11895780 | Msa0630200:CDS | 25.0% |
| !! | AAATGTTTAATTGAGTTGCA+TGG | - | chr4_3:11895803-11895822 | Msa0630200:CDS | 25.0% |
| !! | AAATAACCATTCAAAAGCAT+TGG | + | chr4_3:11895869-11895888 | None:intergenic | 25.0% |
| !!! | AGGTGTATGATACTTTTTTA+TGG | - | chr4_3:11895892-11895911 | Msa0630200:five_prime_UTR | 25.0% |
| !!! | CTCTCTCATTTTTTTCAACA+TGG | - | chr4_3:11892267-11892286 | Msa0630200:three_prime_UTR | 30.0% |
| ATAACAACACCTTCATCAAA+CGG | - | chr4_3:11892340-11892359 | Msa0630200:three_prime_UTR | 30.0% | |
| AACAGTAAATGTAACAACAC+AGG | + | chr4_3:11892617-11892636 | None:intergenic | 30.0% | |
| ! | TGTGTTGTTACATTTACTGT+TGG | - | chr4_3:11892616-11892635 | Msa0630200:intron | 30.0% |
| TTGTTACATTTACTGTTGGT+GGG | - | chr4_3:11892620-11892639 | Msa0630200:intron | 30.0% | |
| ! | GGCCTAATTCTAATGATTTT+GGG | - | chr4_3:11892710-11892729 | Msa0630200:intron | 30.0% |
| GTCCCAAAATCATTAGAATT+AGG | + | chr4_3:11892715-11892734 | None:intergenic | 30.0% | |
| TTTCATACCTATACTAGCTA+AGG | + | chr4_3:11892873-11892892 | None:intergenic | 30.0% | |
| TGTCCATATTCGATAAGATT+TGG | - | chr4_3:11893454-11893473 | Msa0630200:intron | 30.0% | |
| ATGCAGATTTATGAGAAGAA+AGG | + | chr4_3:11893517-11893536 | None:intergenic | 30.0% | |
| !! | AAAATCTTACTTTGGAGTCA+AGG | + | chr4_3:11893768-11893787 | None:intergenic | 30.0% |
| ! | AACATTTCATTGGAACGTTT+TGG | - | chr4_3:11894075-11894094 | Msa0630200:CDS | 30.0% |
| ! | ACATTTCATTGGAACGTTTT+GGG | - | chr4_3:11894076-11894095 | Msa0630200:CDS | 30.0% |
| ATCAAAACACATCCAAATGT+AGG | + | chr4_3:11894266-11894285 | None:intergenic | 30.0% | |
| !!! | ATTTGGATGTGTTTTGATGA+AGG | - | chr4_3:11894268-11894287 | Msa0630200:intron | 30.0% |
| CTGCTTATGAGAATTATTTC+AGG | - | chr4_3:11894333-11894352 | Msa0630200:intron | 30.0% | |
| AAAAGAACATTAACCCTCAA+AGG | + | chr4_3:11894404-11894423 | None:intergenic | 30.0% | |
| AGCTGCATTTAACTACAATT+TGG | + | chr4_3:11894611-11894630 | None:intergenic | 30.0% | |
| ATCTTCTTGATTAACAATGG+TGG | - | chr4_3:11895221-11895240 | Msa0630200:intron | 30.0% | |
| ATTGAAGTTGAAATCCATGA+TGG | - | chr4_3:11895251-11895270 | Msa0630200:intron | 30.0% | |
| ! | CAGTTCTTGATAACATTGTA+TGG | + | chr4_3:11895278-11895297 | None:intergenic | 30.0% |
| CATACAATGTTATCAAGAAC+TGG | - | chr4_3:11895276-11895295 | Msa0630200:intron | 30.0% | |
| ATGTTTCCAATATGAAGTGT+CGG | - | chr4_3:11895449-11895468 | Msa0630200:CDS | 30.0% | |
| ! | ATTTTACCGACACTTCATAT+TGG | + | chr4_3:11895458-11895477 | None:intergenic | 30.0% |
| AAGCATAAACAATCCTTCTT+TGG | + | chr4_3:11895571-11895590 | None:intergenic | 30.0% | |
| !! | TAAATTTCTGAAGTTCACTG+AGG | + | chr4_3:11895685-11895704 | None:intergenic | 30.0% |
| ! | GTTGTTATTATGTCGTTGCA+TGG | + | chr4_3:11892328-11892347 | None:intergenic | 35.0% |
| GTTGTTACATTTACTGTTGG+TGG | - | chr4_3:11892619-11892638 | Msa0630200:intron | 35.0% | |
| ! | TTGCCAGTGATTTGTATTGT+TGG | - | chr4_3:11892685-11892704 | Msa0630200:intron | 35.0% |
| ! | CAGTGATTTGTATTGTTGGT+GGG | - | chr4_3:11892689-11892708 | Msa0630200:intron | 35.0% |
| ! | GGGCCTAATTCTAATGATTT+TGG | - | chr4_3:11892709-11892728 | Msa0630200:intron | 35.0% |
| !! | AGAGAGATTGAGTTGAGATT+TGG | + | chr4_3:11892822-11892841 | None:intergenic | 35.0% |
| ! | TTTTAGGCCTTAGCTAGTAT+AGG | - | chr4_3:11892863-11892882 | Msa0630200:CDS | 35.0% |
| AAAAATAGTGACACTGGCAT+AGG | - | chr4_3:11892938-11892957 | Msa0630200:CDS | 35.0% | |
| CAGCTTATGCTTATGTAAAC+AGG | + | chr4_3:11893692-11893711 | None:intergenic | 35.0% | |
| !! | TACTTTGGAGTCAAGGAAAA+TGG | + | chr4_3:11893761-11893780 | None:intergenic | 35.0% |
| TGACAGATTGAGTAATCCAA+TGG | - | chr4_3:11893869-11893888 | Msa0630200:CDS | 35.0% | |
| GACAGATTGAGTAATCCAAT+GGG | - | chr4_3:11893870-11893889 | Msa0630200:CDS | 35.0% | |
| ATTGAGTAATCCAATGGGAT+TGG | - | chr4_3:11893875-11893894 | Msa0630200:CDS | 35.0% | |
| ! | GCTTTTGCTACTCTTAGTTT+CGG | + | chr4_3:11893966-11893985 | None:intergenic | 35.0% |
| ATGAAATGTTTGTGATCCTC+AGG | + | chr4_3:11894065-11894084 | None:intergenic | 35.0% | |
| GAGGATCACAAACATTTCAT+TGG | - | chr4_3:11894065-11894084 | Msa0630200:CDS | 35.0% | |
| ! | CATTTCATTGGAACGTTTTG+GGG | - | chr4_3:11894077-11894096 | Msa0630200:CDS | 35.0% |
| TGAAAATAGGTCCAGCAAAT+AGG | + | chr4_3:11894154-11894173 | None:intergenic | 35.0% | |
| TTCAATGATTACAGTTCCGT+TGG | - | chr4_3:11894170-11894189 | Msa0630200:CDS | 35.0% | |
| CAAAAGAAGTGAGTAACCAA+CGG | + | chr4_3:11894189-11894208 | None:intergenic | 35.0% | |
| GATTATTGTTCAGCCTGATA+GGG | - | chr4_3:11894223-11894242 | Msa0630200:CDS | 35.0% | |
| AAGCAGTATTGTTCCTCTTA+AGG | + | chr4_3:11894319-11894338 | None:intergenic | 35.0% | |
| ! | TTCAGGATTTTTGTTCCTGA+AGG | - | chr4_3:11894350-11894369 | Msa0630200:intron | 35.0% |
| TCTCTAGGTTCAGATTTCAA+AGG | + | chr4_3:11894380-11894399 | None:intergenic | 35.0% | |
| ! | CTTTTGGCAATTTCAGCTTT+TGG | + | chr4_3:11894499-11894518 | None:intergenic | 35.0% |
| CAAAAGCTGAAATTGCCAAA+AGG | - | chr4_3:11894497-11894516 | Msa0630200:CDS | 35.0% | |
| TGAAATTGCCAAAAGGATGT+GGG | - | chr4_3:11894504-11894523 | Msa0630200:CDS | 35.0% | |
| ! | ATTACTTACCCACATCCTTT+TGG | + | chr4_3:11894515-11894534 | None:intergenic | 35.0% |
| TGCAATTAAGGTCACATAAG+CGG | + | chr4_3:11894636-11894655 | None:intergenic | 35.0% | |
| TATGAGTTCCAGATGCAATA+TGG | - | chr4_3:11894890-11894909 | Msa0630200:intron | 35.0% | |
| CAATTGAACCATATTGCATC+TGG | + | chr4_3:11894901-11894920 | None:intergenic | 35.0% | |
| CAGATGCAATATGGTTCAAT+TGG | - | chr4_3:11894899-11894918 | Msa0630200:intron | 35.0% | |
| TGCAATATGGTTCAATTGGA+TGG | - | chr4_3:11894903-11894922 | Msa0630200:intron | 35.0% | |
| CTTAGGAGAAAAAATGTGCT+AGG | + | chr4_3:11895087-11895106 | None:intergenic | 35.0% | |
| TAACATTGTATGGTCCATCA+TGG | + | chr4_3:11895268-11895287 | None:intergenic | 35.0% | |
| ATCAAGAACTGGAATTACAC+TGG | - | chr4_3:11895287-11895306 | Msa0630200:intron | 35.0% | |
| GGATTGTTTATGCTTCATTG+AGG | - | chr4_3:11895576-11895595 | Msa0630200:CDS | 35.0% | |
| TAGCAAAGAGTTGCTTGAAT+GGG | - | chr4_3:11895621-11895640 | Msa0630200:CDS | 35.0% | |
| !! | AGCATTGGTGCAAAAAAAGT+TGG | + | chr4_3:11895854-11895873 | None:intergenic | 35.0% |
| ! | TTTGCACCAATGCTTTTGAA+TGG | - | chr4_3:11895860-11895879 | Msa0630200:five_prime_UTR | 35.0% |
| TTCAACATGGACACAAACCT+AGG | - | chr4_3:11892280-11892299 | Msa0630200:three_prime_UTR | 40.0% | |
| ! | TGGTGATTTGCATGATTCGA+GGG | + | chr4_3:11892308-11892327 | None:intergenic | 40.0% |
| ! | ATGGTGATTTGCATGATTCG+AGG | + | chr4_3:11892309-11892328 | None:intergenic | 40.0% |
| !! | TGAAGGGGATTTTTGGATTG+TGG | + | chr4_3:11892374-11892393 | None:intergenic | 40.0% |
| !!! | ATTGGGTTGAAGGGGATTTT+TGG | + | chr4_3:11892381-11892400 | None:intergenic | 40.0% |
| TTCAGATGAAGCTAGGGATT+GGG | + | chr4_3:11892398-11892417 | None:intergenic | 40.0% | |
| ATTCAGATGAAGCTAGGGAT+TGG | + | chr4_3:11892399-11892418 | None:intergenic | 40.0% | |
| ! | GGTTGATTCAGATGAAGCTA+GGG | + | chr4_3:11892404-11892423 | None:intergenic | 40.0% |
| ! | TGATGGATATGCAAGGTCTA+GGG | - | chr4_3:11892582-11892601 | Msa0630200:CDS | 40.0% |
| AGCGTGATTAATGCAATTGC+TGG | - | chr4_3:11892646-11892665 | Msa0630200:intron | 40.0% | |
| CCACCAACAATACAAATCAC+TGG | + | chr4_3:11892691-11892710 | None:intergenic | 40.0% | |
| ! | CCAGTGATTTGTATTGTTGG+TGG | - | chr4_3:11892688-11892707 | Msa0630200:intron | 40.0% |
| CTAAGTTCCTGGCTAAAATC+AGG | + | chr4_3:11892769-11892788 | None:intergenic | 40.0% | |
| !! | CTGATTTTAGCCAGGAACTT+AGG | - | chr4_3:11892767-11892786 | Msa0630200:intron | 40.0% |
| !! | ATTGAGTTGAGATTTGGACC+TGG | + | chr4_3:11892816-11892835 | None:intergenic | 40.0% |
| ! | CTTGGTTTGATTATAGGCTG+TGG | - | chr4_3:11893598-11893617 | Msa0630200:intron | 40.0% |
| GGAATTAGTCCTTTAGCAGA+TGG | + | chr4_3:11894044-11894063 | None:intergenic | 40.0% | |
| TGCTAAAGGACTAATTCCTG+AGG | - | chr4_3:11894046-11894065 | Msa0630200:CDS | 40.0% | |
| CGATTATTGTTCAGCCTGAT+AGG | - | chr4_3:11894222-11894241 | Msa0630200:CDS | 40.0% | |
| ATTGGAGATGGTCCTACATT+TGG | - | chr4_3:11894251-11894270 | Msa0630200:intron | 40.0% | |
| GATTTCAAAGGCAAACCTTC+AGG | + | chr4_3:11894368-11894387 | None:intergenic | 40.0% | |
| CTGAAATTGCCAAAAGGATG+TGG | - | chr4_3:11894503-11894522 | Msa0630200:CDS | 40.0% | |
| CCTCAATGCAACTGCAATTA+AGG | + | chr4_3:11894648-11894667 | None:intergenic | 40.0% | |
| CCTTAATTGCAGTTGCATTG+AGG | - | chr4_3:11894645-11894664 | Msa0630200:intron | 40.0% | |
| TATGATGTGCAAGACAAACC+TGG | + | chr4_3:11895006-11895025 | None:intergenic | 40.0% | |
| TTATATGTAGGTGACAGCAC+AGG | - | chr4_3:11895160-11895179 | Msa0630200:intron | 40.0% | |
| ! | TTGGTTGATGCTATCCACAA+TGG | - | chr4_3:11895311-11895330 | Msa0630200:intron | 40.0% |
| AGCAATTTCCTTGACCATTG+TGG | + | chr4_3:11895328-11895347 | None:intergenic | 40.0% | |
| ACAATGGTCAAGGAAATTGC+TGG | - | chr4_3:11895327-11895346 | Msa0630200:intron | 40.0% | |
| ! | ATGGTAGGTCTTTTGTGAAG+AGG | - | chr4_3:11895513-11895532 | Msa0630200:CDS | 40.0% |
| CATTGAGGTGATTGTTCACA+AGG | - | chr4_3:11895591-11895610 | Msa0630200:CDS | 40.0% | |
| CTAGCAAAGAGTTGCTTGAA+TGG | - | chr4_3:11895620-11895639 | Msa0630200:CDS | 40.0% | |
| AGCAAAGAGTTGCTTGAATG+GGG | - | chr4_3:11895622-11895641 | Msa0630200:CDS | 40.0% | |
| AAGTTCACTGAGGATTAGGT+GGG | + | chr4_3:11895675-11895694 | None:intergenic | 40.0% | |
| ! | TCTGAAGTTCACTGAGGATT+AGG | + | chr4_3:11895679-11895698 | None:intergenic | 40.0% |
| !! | GAAACAGTGCCGTTTGATGA+AGG | + | chr4_3:11892352-11892371 | None:intergenic | 45.0% |
| !! | AAGCTAGGGATTGGGTTGAA+GGG | + | chr4_3:11892390-11892409 | None:intergenic | 45.0% |
| ! | GGGTTGATTCAGATGAAGCT+AGG | + | chr4_3:11892405-11892424 | None:intergenic | 45.0% |
| GCTTCATCTGAATCAACCCT+AGG | - | chr4_3:11892406-11892425 | Msa0630200:three_prime_UTR | 45.0% | |
| AAGGTCAGGTTAAAGTCACC+GGG | + | chr4_3:11892487-11892506 | None:intergenic | 45.0% | |
| CAAGGTCAGGTTAAAGTCAC+CGG | + | chr4_3:11892488-11892507 | None:intergenic | 45.0% | |
| GAACCGAAGCTGAAAAACGT+CGG | - | chr4_3:11892526-11892545 | Msa0630200:CDS | 45.0% | |
| !! | CAACCGACGTTTTTCAGCTT+CGG | + | chr4_3:11892532-11892551 | None:intergenic | 45.0% |
| TGCTGTAACGAACTGAATGC+TGG | - | chr4_3:11892550-11892569 | Msa0630200:CDS | 45.0% | |
| AATGCTGGATATGCTGCTGA+TGG | - | chr4_3:11892565-11892584 | Msa0630200:CDS | 45.0% | |
| ! | ATGCTGCTGATGGATATGCA+AGG | - | chr4_3:11892575-11892594 | Msa0630200:CDS | 45.0% |
| ! | CTGATGGATATGCAAGGTCT+AGG | - | chr4_3:11892581-11892600 | Msa0630200:CDS | 45.0% |
| GATGGATATGCAAGGTCTAG+GGG | - | chr4_3:11892583-11892602 | Msa0630200:CDS | 45.0% | |
| !! | TGGTTTGCCTGATTTTAGCC+AGG | - | chr4_3:11892759-11892778 | Msa0630200:intron | 45.0% |
| TCTGGAAACACCTAAGTTCC+TGG | + | chr4_3:11892780-11892799 | None:intergenic | 45.0% | |
| AATAGTGACACTGGCATAGG+TGG | - | chr4_3:11892941-11892960 | Msa0630200:CDS | 45.0% | |
| ATAGGCTGTGGTCAACAACT+TGG | - | chr4_3:11893610-11893629 | Msa0630200:intron | 45.0% | |
| ACTGAAAGTAGGGTGAGGAA+TGG | + | chr4_3:11893726-11893745 | None:intergenic | 45.0% | |
| GGAGTCAAGGAAAATGGAAC+AGG | + | chr4_3:11893755-11893774 | None:intergenic | 45.0% | |
| GAGTAATCCAATGGGATTGG+AGG | - | chr4_3:11893878-11893897 | Msa0630200:CDS | 45.0% | |
| GTGAAACCAGTACTAGTAGC+CGG | - | chr4_3:11893939-11893958 | Msa0630200:CDS | 45.0% | |
| TGCTACTCTTAGTTTCGGAC+CGG | + | chr4_3:11893961-11893980 | None:intergenic | 45.0% | |
| TCCTTTAGCAGATGGCATGA+CGG | + | chr4_3:11894036-11894055 | None:intergenic | 45.0% | |
| ! | TGCATTTTGTGCCGAGATTG+TGG | - | chr4_3:11894112-11894131 | Msa0630200:CDS | 45.0% |
| TTGTGCCGAGATTGTGGAAT+CGG | - | chr4_3:11894118-11894137 | Msa0630200:CDS | 45.0% | |
| ! | ATCAGCCGATTCCACAATCT+CGG | + | chr4_3:11894126-11894145 | None:intergenic | 45.0% |
| GCTGATGCATACCTATTTGC+TGG | - | chr4_3:11894140-11894159 | Msa0630200:CDS | 45.0% | |
| TCTCCAATCACAACCCTATC+AGG | + | chr4_3:11894239-11894258 | None:intergenic | 45.0% | |
| GATAGGGTTGTGATTGGAGA+TGG | - | chr4_3:11894239-11894258 | Msa0630200:CDS | 45.0% | |
| TGAACCTAGAGAGCCTTTGA+GGG | - | chr4_3:11894388-11894407 | Msa0630200:CDS | 45.0% | |
| TTAACCCTCAAAGGCTCTCT+AGG | + | chr4_3:11894395-11894414 | None:intergenic | 45.0% | |
| GGTTCAATTGGATGGTCTGT+TGG | - | chr4_3:11894911-11894930 | Msa0630200:intron | 45.0% | |
| AAGCGAGTGATTGCTTGCAT+TGG | - | chr4_3:11894968-11894987 | Msa0630200:intron | 45.0% | |
| ! | GTGATTGCTTGCATTGGTGA+TGG | - | chr4_3:11894974-11894993 | Msa0630200:intron | 45.0% |
| !! | CATTGGTGATGGAAGTTTCC+AGG | - | chr4_3:11894985-11895004 | Msa0630200:intron | 45.0% |
| ! | GAACTGGAATTACACTGGCT+TGG | - | chr4_3:11895292-11895311 | Msa0630200:intron | 45.0% |
| GATGCTATCCACAATGGTCA+AGG | - | chr4_3:11895317-11895336 | Msa0630200:intron | 45.0% | |
| AGGAAATTGCTGGACCACTA+AGG | - | chr4_3:11895337-11895356 | Msa0630200:CDS | 45.0% | |
| GAAGCAATTGAGACAGCAAC+AGG | - | chr4_3:11895544-11895563 | Msa0630200:CDS | 45.0% | |
| AGTTGCTTGAATGGGGATCA+AGG | - | chr4_3:11895629-11895648 | Msa0630200:CDS | 45.0% | |
| GTTGCTTGAATGGGGATCAA+GGG | - | chr4_3:11895630-11895649 | Msa0630200:CDS | 45.0% | |
| GAAGTTCACTGAGGATTAGG+TGG | + | chr4_3:11895676-11895695 | None:intergenic | 45.0% | |
| !!! | TAATAATAGTTTTATAAAAT+TGG | - | chr4_3:11892971-11892990 | Msa0630200:intron | 5.0% |
| !! | ATTATTGTAATATTATAATA+TGG | - | chr4_3:11893267-11893286 | Msa0630200:intron | 5.0% |
| !! | TTAATTTATATATTTGATTA+TGG | - | chr4_3:11895494-11895513 | Msa0630200:CDS | 5.0% |
| TGCATGATTCGAGGGATCCT+AGG | + | chr4_3:11892300-11892319 | None:intergenic | 50.0% | |
| !! | AGCTAGGGATTGGGTTGAAG+GGG | + | chr4_3:11892389-11892408 | None:intergenic | 50.0% |
| !! | GAAGCTAGGGATTGGGTTGA+AGG | + | chr4_3:11892391-11892410 | None:intergenic | 50.0% |
| ! | ACCGATATTTTCACCGTCCC+CGG | - | chr4_3:11892466-11892485 | Msa0630200:CDS | 50.0% |
| ACCGGGGACGGTGAAAATAT+CGG | + | chr4_3:11892470-11892489 | None:intergenic | 50.0% | |
| AGGTCAGGTTAAAGTCACCG+GGG | + | chr4_3:11892486-11892505 | None:intergenic | 50.0% | |
| ATATGCAAGGTCTAGGGGTG+TGG | - | chr4_3:11892588-11892607 | Msa0630200:CDS | 50.0% | |
| ! | TATGCAAGGTCTAGGGGTGT+GGG | - | chr4_3:11892589-11892608 | Msa0630200:CDS | 50.0% |
| CCTGGTAGCAAGTAACAGTC+TGG | + | chr4_3:11892798-11892817 | None:intergenic | 50.0% | |
| ! | CCAGACTGTTACTTGCTACC+AGG | - | chr4_3:11892795-11892814 | Msa0630200:CDS | 50.0% |
| CAGGTTCGCGACTGAAAGTA+GGG | + | chr4_3:11893736-11893755 | None:intergenic | 50.0% | |
| ACAGGTTCGCGACTGAAAGT+AGG | + | chr4_3:11893737-11893756 | None:intergenic | 50.0% | |
| ! | GCAGATGGCATGACGGAATA+TGG | + | chr4_3:11894029-11894048 | None:intergenic | 50.0% |
| TCCGTCATGCCATCTGCTAA+AGG | - | chr4_3:11894032-11894051 | Msa0630200:CDS | 50.0% | |
| CAGCCTGATAGGGTTGTGAT+TGG | - | chr4_3:11894233-11894252 | Msa0630200:CDS | 50.0% | |
| CTGAACCTAGAGAGCCTTTG+AGG | - | chr4_3:11894387-11894406 | Msa0630200:CDS | 50.0% | |
| ACTGCTGTTATTGCCGAGAC+AGG | - | chr4_3:11894455-11894474 | Msa0630200:CDS | 50.0% | |
| CTGCTGTTATTGCCGAGACA+GGG | - | chr4_3:11894456-11894475 | Msa0630200:CDS | 50.0% | |
| TGCTGTTATTGCCGAGACAG+GGG | - | chr4_3:11894457-11894476 | Msa0630200:CDS | 50.0% | |
| AAACCATGAGTCCCCTGTCT+CGG | + | chr4_3:11894471-11894490 | None:intergenic | 50.0% | |
| TGGTCTGTTGGTGCAACTCT+CGG | - | chr4_3:11894923-11894942 | Msa0630200:intron | 50.0% | |
| CGGATATGCTCAAGCTGTTC+CGG | - | chr4_3:11894943-11894962 | Msa0630200:intron | 50.0% | |
| CAAGCAATCACTCGCTTCTC+CGG | + | chr4_3:11894965-11894984 | None:intergenic | 50.0% | |
| GTGTCCACAATGCTGAGATG+TGG | - | chr4_3:11895185-11895204 | Msa0630200:intron | 50.0% | |
| CTGTCCACATCTCAGCATTG+TGG | + | chr4_3:11895192-11895211 | None:intergenic | 50.0% | |
| GACAGCAACAGGACCAAAGA+AGG | - | chr4_3:11895555-11895574 | Msa0630200:CDS | 50.0% | |
| CCGTGCTAGGTGACTTCCTA+GGG | + | chr4_3:11892425-11892444 | None:intergenic | 55.0% | |
| CCCTAGGAAGTCACCTAGCA+CGG | - | chr4_3:11892422-11892441 | Msa0630200:three_prime_UTR | 55.0% | |
| CAGGTTAAAGTCACCGGGGA+CGG | + | chr4_3:11892482-11892501 | None:intergenic | 55.0% | |
| TCAGCTTCGGTTCAGCGATC+AGG | + | chr4_3:11892519-11892538 | None:intergenic | 55.0% | |
| TCGCGACTGAAAGTAGGGTG+AGG | + | chr4_3:11893731-11893750 | None:intergenic | 55.0% | |
| ACTGCTGCCTCCAATCCCAT+TGG | + | chr4_3:11893888-11893907 | None:intergenic | 55.0% | |
| AATGGGATTGGAGGCAGCAG+TGG | - | chr4_3:11893887-11893906 | Msa0630200:CDS | 55.0% | |
| TTCGGACCGGCTACTAGTAC+TGG | + | chr4_3:11893948-11893967 | None:intergenic | 55.0% | |
| ! | CACTTGCGAAGCGCCTTAAG+AGG | - | chr4_3:11894303-11894322 | Msa0630200:intron | 55.0% |
| GCCGTGCTAGGTGACTTCCT+AGG | + | chr4_3:11892426-11892445 | None:intergenic | 60.0% | |
| TCACCTAGCACGGCGACTAG+TGG | - | chr4_3:11892432-11892451 | Msa0630200:three_prime_UTR | 60.0% | |
| CTTCCACTAGTCGCCGTGCT+AGG | + | chr4_3:11892438-11892457 | None:intergenic | 60.0% | |
| GCACGGCGACTAGTGGAAGT+CGG | - | chr4_3:11892439-11892458 | Msa0630200:exon | 60.0% | |
| TCAGGTGGTCGAGCAAGGTC+AGG | + | chr4_3:11892501-11892520 | None:intergenic | 60.0% | |
| AGCGATCAGGTGGTCGAGCA+AGG | + | chr4_3:11892506-11892525 | None:intergenic | 60.0% | |
| GCTTCGGTTCAGCGATCAGG+TGG | + | chr4_3:11892516-11892535 | None:intergenic | 60.0% | |
| TTGCCGAGACAGGGGACTCA+TGG | - | chr4_3:11894465-11894484 | Msa0630200:CDS | 60.0% | |
| GGCAGCAGTGGAAGCAGCTG+CGG | - | chr4_3:11893899-11893918 | Msa0630200:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 11892213 | 11895931 | 11892213 | ID=Msa0630200;Name=Msa0630200 |
| chr4_3 | mRNA | 11892213 | 11895931 | 11892213 | ID=Msa0630200-mRNA-1;Parent=Msa0630200;Name=Msa0630200-mRNA-1;_AED=0.08;_eAED=0.08;_QI=73|1|1|1|1|1|6|241|607 |
| chr4_3 | exon | 11892213 | 11892624 | 11892213 | ID=Msa0630200-mRNA-1:exon:3568;Parent=Msa0630200-mRNA-1 |
| chr4_3 | exon | 11892786 | 11892974 | 11892786 | ID=Msa0630200-mRNA-1:exon:3567;Parent=Msa0630200-mRNA-1 |
| chr4_3 | exon | 11893138 | 11893255 | 11893138 | ID=Msa0630200-mRNA-1:exon:3566;Parent=Msa0630200-mRNA-1 |
| chr4_3 | exon | 11893619 | 11894269 | 11893619 | ID=Msa0630200-mRNA-1:exon:3565;Parent=Msa0630200-mRNA-1 |
| chr4_3 | exon | 11894367 | 11894530 | 11894367 | ID=Msa0630200-mRNA-1:exon:3564;Parent=Msa0630200-mRNA-1 |
| chr4_3 | exon | 11895328 | 11895931 | 11895328 | ID=Msa0630200-mRNA-1:exon:3563;Parent=Msa0630200-mRNA-1 |
| chr4_3 | five_prime_UTR | 11895859 | 11895931 | 11895859 | ID=Msa0630200-mRNA-1:five_prime_utr;Parent=Msa0630200-mRNA-1 |
| chr4_3 | CDS | 11895328 | 11895858 | 11895328 | ID=Msa0630200-mRNA-1:cds;Parent=Msa0630200-mRNA-1 |
| chr4_3 | CDS | 11894367 | 11894530 | 11894367 | ID=Msa0630200-mRNA-1:cds;Parent=Msa0630200-mRNA-1 |
| chr4_3 | CDS | 11893619 | 11894269 | 11893619 | ID=Msa0630200-mRNA-1:cds;Parent=Msa0630200-mRNA-1 |
| chr4_3 | CDS | 11893138 | 11893255 | 11893138 | ID=Msa0630200-mRNA-1:cds;Parent=Msa0630200-mRNA-1 |
| chr4_3 | CDS | 11892786 | 11892974 | 11892786 | ID=Msa0630200-mRNA-1:cds;Parent=Msa0630200-mRNA-1 |
| chr4_3 | CDS | 11892454 | 11892624 | 11892454 | ID=Msa0630200-mRNA-1:cds;Parent=Msa0630200-mRNA-1 |
| chr4_3 | three_prime_UTR | 11892213 | 11892453 | 11892213 | ID=Msa0630200-mRNA-1:three_prime_utr;Parent=Msa0630200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
