Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0630180 | XP_003604737.1 | 96.759 | 617 | 10 | 1 | 1 | 617 | 1 | 607 | 0.0 | 1234 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0630180 | sp|Q9M040|PDC4_ARATH | 81.524 | 617 | 100 | 2 | 1 | 617 | 1 | 603 | 0.0 | 1056 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0630180 | Msa0630200 | 0.871171 | 8.374558e-67 | -8.615850e-47 |
| Msa0630180 | Msa0668270 | 0.855534 | 5.915694e-62 | -8.615850e-47 |
| Msa0630180 | Msa1142590 | 0.807159 | 5.792565e-50 | -8.615850e-47 |
| Msa0533530 | Msa0630180 | 0.830736 | 2.482830e-55 | -8.615850e-47 |
| Msa0589790 | Msa0630180 | 0.811924 | 5.488244e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0630180 | MtrunA17_Chr4g0007071 | 96.759 | 617 | 10 | 1 | 1 | 617 | 1 | 607 | 0.0 | 1234 |
| Msa0630180 | MtrunA17_Chr5g0420011 | 96.596 | 617 | 11 | 1 | 1 | 617 | 1 | 607 | 0.0 | 1231 |
| Msa0630180 | MtrunA17_Chr7g0242961 | 84.441 | 617 | 82 | 4 | 1 | 617 | 1 | 603 | 0.0 | 1069 |
| Msa0630180 | MtrunA17_Chr7g0242981 | 80.744 | 618 | 89 | 4 | 1 | 617 | 1 | 589 | 0.0 | 1012 |
| Msa0630180 | MtrunA17_Chr2g0283471 | 79.094 | 574 | 120 | 0 | 44 | 617 | 9 | 582 | 0.0 | 961 |
| Msa0630180 | MtrunA17_Chr2g0279461 | 63.514 | 222 | 52 | 2 | 50 | 242 | 44 | 265 | 7.17e-97 | 297 |
| Msa0630180 | MtrunA17_Chr2g0279471 | 68.966 | 116 | 36 | 0 | 499 | 614 | 17 | 132 | 9.82e-55 | 182 |
| Msa0630180 | MtrunA17_Chr3g0132201 | 24.490 | 588 | 373 | 21 | 26 | 573 | 51 | 607 | 2.67e-23 | 104 |
| Msa0630180 | MtrunA17_Chr2g0290681 | 23.243 | 555 | 377 | 16 | 50 | 573 | 55 | 591 | 8.44e-19 | 90.5 |
| Msa0630180 | MtrunA17_Chr2g0281881 | 22.530 | 506 | 352 | 15 | 61 | 545 | 88 | 574 | 2.33e-17 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0630180 | AT5G01320.1 | 81.524 | 617 | 100 | 2 | 1 | 617 | 1 | 603 | 0.0 | 1056 |
| Msa0630180 | AT4G33070.1 | 80.614 | 619 | 106 | 4 | 1 | 617 | 1 | 607 | 0.0 | 1048 |
| Msa0630180 | AT5G54960.1 | 80.129 | 619 | 109 | 2 | 1 | 617 | 1 | 607 | 0.0 | 1038 |
| Msa0630180 | AT5G01330.1 | 82.403 | 591 | 100 | 2 | 29 | 617 | 4 | 592 | 0.0 | 1018 |
| Msa0630180 | AT3G48560.1 | 22.070 | 512 | 347 | 14 | 61 | 545 | 103 | 589 | 1.16e-15 | 80.9 |
Find 156 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGCCTAATTCTAATGATTT+TGG | 0.114847 | 4_3:-11874724 | Msa0630180:CDS |
| ATTAAGCTGAGATTACTTTA+AGG | 0.146349 | 4_3:-11872031 | Msa0630180:three_prime_UTR |
| AACATTTCATTGGAACGTTT+TGG | 0.238749 | 4_3:-11873600 | Msa0630180:CDS |
| TACTTTGGAGACAAGGAAAA+TGG | 0.246632 | 4_3:+11873910 | None:intergenic |
| CTGCTTATGAGAATTATTTC+AGG | 0.247181 | 4_3:-11873342 | Msa0630180:CDS |
| CATTGGTGATGGAAGTTTCC+AGG | 0.279678 | 4_3:-11872790 | Msa0630180:intron |
| AAGCATAAGCAATCTTTCTT+TGG | 0.284489 | 4_3:+11872207 | None:intergenic |
| CTATTATTGTTCAGCCTGAT+AGG | 0.293661 | 4_3:-11873453 | Msa0630180:CDS |
| TCTGAAGTTCACTGAGGATT+AGG | 0.294008 | 4_3:+11872099 | None:intergenic |
| AGAATTCTTCATCATACTAT+TGG | 0.294152 | 4_3:-11874694 | Msa0630180:CDS |
| GTCCCAAAATCATTAGAATT+AGG | 0.303299 | 4_3:+11874721 | None:intergenic |
| GCAGATGGCATGACGGAATA+TGG | 0.315658 | 4_3:+11873649 | None:intergenic |
| CGGATATGCTCAAGCTGTTC+CGG | 0.328908 | 4_3:-11872832 | Msa0630180:CDS |
| AAGAAGATTAATTACCTTAG+TGG | 0.336330 | 4_3:+11872424 | None:intergenic |
| TGAAAATAGGTCCAGCAAAT+AGG | 0.336734 | 4_3:+11873524 | None:intergenic |
| ATTACTTACCCACATCCTTT+TGG | 0.345387 | 4_3:+11873163 | None:intergenic |
| GATTTCAAAGGCAAACCTTC+AGG | 0.356531 | 4_3:+11873310 | None:intergenic |
| TCTCCAATCACAACCCTATC+AGG | 0.360164 | 4_3:+11873439 | None:intergenic |
| TATGAGTTCCAGATGCAATA+TGG | 0.362998 | 4_3:-11872885 | Msa0630180:CDS |
| CAGATGCAATATGGTTCAAT+TGG | 0.366605 | 4_3:-11872876 | Msa0630180:CDS |
| GAGGATCACAAACATTTCAT+TGG | 0.372783 | 4_3:-11873610 | Msa0630180:CDS |
| AAGCAGTATTGTTCCTCTTA+AGG | 0.376245 | 4_3:+11873359 | None:intergenic |
| CAGCTTATGCTAATATAAAC+AGG | 0.380505 | 4_3:+11873979 | None:intergenic |
| GAACTGTAATCATTGAAAAT+AGG | 0.384366 | 4_3:+11873511 | None:intergenic |
| CAGTTCTTGATAACATTGTA+TGG | 0.391023 | 4_3:+11872500 | None:intergenic |
| GCTGATGCATACCTATTTGC+TGG | 0.395610 | 4_3:-11873535 | Msa0630180:CDS |
| GAGGCTAGGGATTGGGTTGA+AGG | 0.395680 | 4_3:+11875045 | None:intergenic |
| AGCTTGATTAATGCAATTGC+TGG | 0.396533 | 4_3:-11874787 | Msa0630180:CDS |
| ATTGGAGATGGTCCTACATT+TGG | 0.399314 | 4_3:-11873424 | Msa0630180:CDS |
| TTCAGATGAGGCTAGGGATT+GGG | 0.400283 | 4_3:+11875038 | None:intergenic |
| TCTGAAAACACCTAAGTTCC+TGG | 0.417152 | 4_3:+11874656 | None:intergenic |
| CTGAACCTAGAGAGCCTTTG+AGG | 0.417588 | 4_3:-11873288 | Msa0630180:CDS |
| TCAGCTTCGGTTCAGCGATC+AGG | 0.418349 | 4_3:+11874917 | None:intergenic |
| CAATTGAACCATATTGCATC+TGG | 0.423310 | 4_3:+11872877 | None:intergenic |
| TTGCCAGTGATTTGTATTGT+TGG | 0.427170 | 4_3:-11874748 | Msa0630180:CDS |
| CAAGCAATCACTCGCTTCTC+CGG | 0.431538 | 4_3:+11872813 | None:intergenic |
| TAGCAAAGAGTTGCTTGAAT+GGG | 0.434683 | 4_3:-11872154 | Msa0630180:CDS |
| CTGATGGATATGCAAGGTCT+AGG | 0.436168 | 4_3:-11874852 | Msa0630180:CDS |
| GAAGCAATTCAGACAGCAAC+AGG | 0.436338 | 4_3:-11872231 | Msa0630180:CDS |
| AGTTGCTTGAATGGGGATCA+AGG | 0.443953 | 4_3:-11872146 | Msa0630180:CDS |
| CTGAAATTGCCAAAAGGATG+TGG | 0.445246 | 4_3:-11873172 | Msa0630180:CDS |
| TTCAATGATTACAGTTCTGT+TGG | 0.449416 | 4_3:-11873505 | Msa0630180:CDS |
| CATACAATGTTATCAAGAAC+TGG | 0.450936 | 4_3:-11872499 | Msa0630180:CDS |
| CTAGCAAAGAGTTGCTTGAA+TGG | 0.452164 | 4_3:-11872155 | Msa0630180:CDS |
| CTAAGTTCCTGGCTAAAATC+AGG | 0.456762 | 4_3:+11874667 | None:intergenic |
| ACTGCTGTTATTGCCGAGAC+AGG | 0.459219 | 4_3:-11873220 | Msa0630180:CDS |
| ACCGGGGACGGTGAAAATAT+CGG | 0.459953 | 4_3:+11874966 | None:intergenic |
| GGAGACAAGGAAAATGGAAC+AGG | 0.460250 | 4_3:+11873916 | None:intergenic |
| TTCGGACCGGCTACTAGTAC+TGG | 0.460290 | 4_3:+11873730 | None:intergenic |
| GGCAGCAGTGGAAGCAGCTG+CGG | 0.462599 | 4_3:-11873776 | Msa0630180:CDS |
| CATTGAGGTGATTGTTCACA+AGG | 0.471803 | 4_3:-11872184 | Msa0630180:CDS |
| GTTGTTACATTTACTGTTGG+TGG | 0.472008 | 4_3:-11874814 | Msa0630180:CDS |
| ATGAAATGTTTGTGATCCTC+AGG | 0.472515 | 4_3:+11873613 | None:intergenic |
| ATTGTTAATCAAGAAGATTA+TGG | 0.473966 | 4_3:+11872559 | None:intergenic |
| CAGTGATTTGTATTGTTGGT+GGG | 0.474712 | 4_3:-11874744 | Msa0630180:CDS |
| CACTTGCGAAGCGCCTTAAG+AGG | 0.476308 | 4_3:-11873372 | Msa0630180:CDS |
| TTGTGCCGAGATAGTGGAAT+CGG | 0.478221 | 4_3:-11873557 | Msa0630180:CDS |
| TGCTGTAACGAACTCAATGC+TGG | 0.480708 | 4_3:-11874883 | Msa0630180:CDS |
| TTAACCCTCAAAGGCTCTCT+AGG | 0.484853 | 4_3:+11873283 | None:intergenic |
| TTGTTACATTTACTGTTGGT+GGG | 0.485744 | 4_3:-11874813 | Msa0630180:CDS |
| ATTGAGTAATCCAATGGGAT+TGG | 0.486444 | 4_3:-11873800 | Msa0630180:CDS |
| ACTGCTGCCTCCAATCCCAT+TGG | 0.487915 | 4_3:+11873790 | None:intergenic |
| ATTCAGATGAGGCTAGGGAT+TGG | 0.489259 | 4_3:+11875037 | None:intergenic |
| GTCGGGCAAGGTGGCTACCT+AGG | 0.489645 | 4_3:+11875010 | None:intergenic |
| TGCTACTCTTAGTTTCGGAC+CGG | 0.492737 | 4_3:+11873717 | None:intergenic |
| TAACGTTAGGTTGAAGTCAC+CGG | 0.493361 | 4_3:+11874948 | None:intergenic |
| ACAATGGTCAAGGAAATTGC+TGG | 0.500572 | 4_3:-11872448 | Msa0630180:CDS |
| TGCAATATGGTTCAATTGGA+TGG | 0.502043 | 4_3:-11872872 | Msa0630180:CDS |
| CCAGTGATTTGTATTGTTGG+TGG | 0.502339 | 4_3:-11874745 | Msa0630180:CDS |
| TGATGGATATGCAAGGTCTA+GGG | 0.503579 | 4_3:-11874851 | Msa0630180:CDS |
| ACCGACTTCCACTAGTCGTC+GGG | 0.505328 | 4_3:+11874993 | None:intergenic |
| TCCGTCATGCCATCTGCTAA+AGG | 0.505379 | 4_3:-11873643 | Msa0630180:CDS |
| CAGCCTGATAGGGTTGTGAT+TGG | 0.505425 | 4_3:-11873442 | Msa0630180:CDS |
| AGCAATTTCCTTGACCATTG+TGG | 0.508734 | 4_3:+11872450 | None:intergenic |
| GAACTGGAATTACACTGGCT+TGG | 0.508806 | 4_3:-11872483 | Msa0630180:CDS |
| TAACATTGTATGGTCCATCA+TGG | 0.509244 | 4_3:+11872510 | None:intergenic |
| ATTACTTTAAGGATACTTGA+GGG | 0.509346 | 4_3:-11872020 | Msa0630180:three_prime_UTR |
| AAATAACCATTCAAAAGCAT+TGG | 0.510545 | 4_3:+11871911 | None:intergenic |
| GGTTCAATTGGATGGTCTGT+TGG | 0.514958 | 4_3:-11872864 | Msa0630180:CDS |
| TATTATTGTTCAGCCTGATA+GGG | 0.516594 | 4_3:-11873452 | Msa0630180:CDS |
| AGGCTAGGGATTGGGTTGAA+GGG | 0.522886 | 4_3:+11875046 | None:intergenic |
| TGAACCTAGAGAGCCTTTGA+GGG | 0.523049 | 4_3:-11873287 | Msa0630180:CDS |
| TGACAGATTGAGTAATCCAA+TGG | 0.525959 | 4_3:-11873806 | Msa0630180:intron |
| TTGCCGAGACAGGGGACTCA+TGG | 0.526361 | 4_3:-11873210 | Msa0630180:CDS |
| TGCATGTTTCGAGGGATCCT+AGG | 0.526745 | 4_3:+11875166 | None:intergenic |
| GACAGATTGAGTAATCCAAT+GGG | 0.528687 | 4_3:-11873805 | Msa0630180:intron |
| AATTGTTTAATTGAGTTGAA+CGG | 0.532062 | 4_3:-11871974 | Msa0630180:three_prime_UTR |
| GGCTAGGGATTGGGTTGAAG+GGG | 0.532731 | 4_3:+11875047 | None:intergenic |
| AGGAAATTGCTGGACCACTA+AGG | 0.533010 | 4_3:-11872438 | Msa0630180:intron |
| ATAGGCTGTGGTCAACAACT+TGG | 0.534954 | 4_3:-11874058 | Msa0630180:intron |
| TGGTCTGTTGGTGCAACTCT+CGG | 0.535873 | 4_3:-11872852 | Msa0630180:CDS |
| GAGTAATCCAATGGGATTGG+AGG | 0.536971 | 4_3:-11873797 | Msa0630180:CDS |
| CAAAAGCTGAAATTGCCAAA+AGG | 0.537401 | 4_3:-11873178 | Msa0630180:CDS |
| GGGTTGATTCAGATGAGGCT+AGG | 0.538563 | 4_3:+11875031 | None:intergenic |
| GGAATTAGTCCTTTAGCAGA+TGG | 0.539613 | 4_3:+11873634 | None:intergenic |
| CCACCTTGCCCGACGACTAG+TGG | 0.539676 | 4_3:-11875001 | Msa0630180:CDS |
| TCAGGTGATCGAGTAACGTT+AGG | 0.541014 | 4_3:+11874935 | None:intergenic |
| CAGGTTCACGACTGAAAGTA+GGG | 0.543920 | 4_3:+11873935 | None:intergenic |
| ATCTTCTTGATTAACAATGG+TGG | 0.543934 | 4_3:-11872554 | Msa0630180:CDS |
| TCAGACTGTTACTTGCTACC+AGG | 0.549159 | 4_3:-11874638 | Msa0630180:intron |
| AACGTTAGGTTGAAGTCACC+GGG | 0.550702 | 4_3:+11874949 | None:intergenic |
| ACAGGTTCACGACTGAAAGT+AGG | 0.552890 | 4_3:+11873934 | None:intergenic |
| GTGATTGCTTGCATTGGTGA+TGG | 0.552907 | 4_3:-11872801 | Msa0630180:CDS |
| AAAAGAACATTAACCCTCAA+AGG | 0.553752 | 4_3:+11873274 | None:intergenic |
| ATCAGCCGATTCCACTATCT+CGG | 0.554106 | 4_3:+11873552 | None:intergenic |
| AATGGGATTGGAGGCAGCAG+TGG | 0.555789 | 4_3:-11873788 | Msa0630180:CDS |
| GTTGCTTGAATGGGGATCAA+GGG | 0.556008 | 4_3:-11872145 | Msa0630180:CDS |
| GGTTGATTCAGATGAGGCTA+GGG | 0.556195 | 4_3:+11875032 | None:intergenic |
| ATTGAAGTTGAAATCCATGA+TGG | 0.557098 | 4_3:-11872524 | Msa0630180:CDS |
| ATGGTGATTTGCATGTTTCG+AGG | 0.558956 | 4_3:+11875157 | None:intergenic |
| TATGCAAGGTCTAGGGGTGT+AGG | 0.562216 | 4_3:-11874844 | Msa0630180:CDS |
| CTTCCACTAGTCGTCGGGCA+AGG | 0.563931 | 4_3:+11874998 | None:intergenic |
| AAACCATGAGTCCCCTGTCT+CGG | 0.564220 | 4_3:+11873207 | None:intergenic |
| GATAGGGTTGTGATTGGAGA+TGG | 0.564456 | 4_3:-11873436 | Msa0630180:CDS |
| TCGGGCAAGGTGGCTACCTA+GGG | 0.564516 | 4_3:+11875011 | None:intergenic |
| CTGCTGTTATTGCCGAGACA+GGG | 0.566446 | 4_3:-11873219 | Msa0630180:CDS |
| TGGTGATTTGCATGTTTCGA+GGG | 0.571332 | 4_3:+11875158 | None:intergenic |
| ATCAAAACACATCCAAATGT+AGG | 0.572453 | 4_3:+11873412 | None:intergenic |
| AAGCGAGTGATTGCTTGCAT+TGG | 0.574293 | 4_3:-11872807 | Msa0630180:CDS |
| TGTGTTGTTACATTTACTGT+TGG | 0.576510 | 4_3:-11874817 | Msa0630180:CDS |
| AGATTGCTTATGCTTCATTG+AGG | 0.577157 | 4_3:-11872199 | Msa0630180:CDS |
| GATGCTATCCACAATGGTCA+AGG | 0.577985 | 4_3:-11872458 | Msa0630180:CDS |
| ATAATCTTCTTGATTAACAA+TGG | 0.579911 | 4_3:-11872557 | Msa0630180:CDS |
| TTCACTGAGGATTAGGAGGA+CGG | 0.580098 | 4_3:+11872106 | None:intergenic |
| GTTGTTATTATGTCGTTGCA+TGG | 0.581178 | 4_3:+11875138 | None:intergenic |
| CCACCAACAATACAAATCAC+TGG | 0.581447 | 4_3:+11874745 | None:intergenic |
| AATGCTGGATATGCTGCTGA+TGG | 0.588023 | 4_3:-11874868 | Msa0630180:CDS |
| GAAGTTCACTGAGGATTAGG+AGG | 0.592723 | 4_3:+11872102 | None:intergenic |
| ATCAAGAACTGGAATTACAC+TGG | 0.595089 | 4_3:-11872488 | Msa0630180:CDS |
| GATTACTTTAAGGATACTTG+AGG | 0.599065 | 4_3:-11872021 | Msa0630180:three_prime_UTR |
| TCCTTTAGCAGATGGCATGA+CGG | 0.599896 | 4_3:+11873642 | None:intergenic |
| GAAACAGTGCTGTTTGATGA+AGG | 0.604999 | 4_3:+11875084 | None:intergenic |
| CTGTCCACATCTCAGCATTG+TGG | 0.605032 | 4_3:+11872586 | None:intergenic |
| TCTCTAGGTTCAGATTTCAA+AGG | 0.609595 | 4_3:+11873298 | None:intergenic |
| ACTGAAAGTAGGGTGAGGAA+TGG | 0.609868 | 4_3:+11873945 | None:intergenic |
| AAAATCTTACTTTGGAGACA+AGG | 0.611605 | 4_3:+11873903 | None:intergenic |
| GTGAAACCAGTACTAGTAGC+CGG | 0.613433 | 4_3:-11873736 | Msa0630180:CDS |
| TGCTGTTATTGCCGAGACAG+GGG | 0.619008 | 4_3:-11873218 | Msa0630180:CDS |
| TAGGTTGAAGTCACCGGGGA+CGG | 0.621326 | 4_3:+11874954 | None:intergenic |
| TTCAACATGGACACAAACCT+AGG | 0.622509 | 4_3:-11875183 | None:intergenic |
| AGCAAAGAGTTGCTTGAATG+GGG | 0.623231 | 4_3:-11872153 | Msa0630180:CDS |
| TGAAATTGCCAAAAGGATGT+GGG | 0.632720 | 4_3:-11873171 | Msa0630180:intron |
| TCACGACTGAAAGTAGGGTG+AGG | 0.637982 | 4_3:+11873940 | None:intergenic |
| TTATATGTAGGTGACAGCAC+AGG | 0.638117 | 4_3:-11872615 | Msa0630180:intron |
| ACCTAGGGTTGATTCAGATG+AGG | 0.638864 | 4_3:+11875026 | None:intergenic |
| GCCTCATCTGAATCAACCCT+AGG | 0.642019 | 4_3:-11875027 | Msa0630180:CDS |
| GTGTCCACAATGCTGAGATG+TGG | 0.644135 | 4_3:-11872590 | Msa0630180:CDS |
| TACCGACTTCCACTAGTCGT+CGG | 0.644310 | 4_3:+11874992 | None:intergenic |
| CCACTAGTCGTCGGGCAAGG+TGG | 0.650330 | 4_3:+11875001 | None:intergenic |
| TGCTAAAGGACTAATTCCTG+AGG | 0.659904 | 4_3:-11873629 | Msa0630180:CDS |
| GATGGATATGCAAGGTCTAG+GGG | 0.660780 | 4_3:-11874850 | Msa0630180:CDS |
| GCCCGACGACTAGTGGAAGT+CGG | 0.665863 | 4_3:-11874994 | Msa0630180:CDS |
| TAAATTTCTGAAGTTCACTG+AGG | 0.695310 | 4_3:+11872093 | None:intergenic |
| TTGGTTGATGCTATCCACAA+TGG | 0.702445 | 4_3:-11872464 | Msa0630180:CDS |
| ATGCTGCTGATGGATATGCA+AGG | 0.712084 | 4_3:-11874858 | Msa0630180:CDS |
| ACGTTAGGTTGAAGTCACCG+GGG | 0.803012 | 4_3:+11874950 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAAAAAAATAAAATT+AGG | + | chr4_3:11872501-11872520 | None:intergenic | 0.0% |
| !!! | AATTTTATTTTTTTATTTTT+AGG | - | chr4_3:11872501-11872520 | Msa0630180:CDS | 0.0% |
| !! | AAAAATAGTATTATTATTGT+TGG | - | chr4_3:11872592-11872611 | Msa0630180:CDS | 10.0% |
| !! | TTATAAAACTATTATTATCA+GGG | + | chr4_3:11872619-11872638 | None:intergenic | 10.0% |
| !! | TTTATAAAACTATTATTATC+AGG | + | chr4_3:11872620-11872639 | None:intergenic | 10.0% |
| !! | TATTGTAATACTATTATAAT+TGG | - | chr4_3:11872843-11872862 | Msa0630180:CDS | 10.0% |
| !! | AAAGAATATTATAATATGAT+TGG | - | chr4_3:11872874-11872893 | Msa0630180:CDS | 10.0% |
| !! | TTTCAAATCTTATAAGTAAA+AGG | + | chr4_3:11872573-11872592 | None:intergenic | 15.0% |
| !!! | TATAAAAAGTTTTCAAGTAT+AGG | - | chr4_3:11872754-11872773 | Msa0630180:intron | 15.0% |
| !! | AAATTTGTCCTATTATAATT+TGG | - | chr4_3:11872931-11872950 | Msa0630180:intron | 15.0% |
| !!! | TTTTAATTTCATCTTTAACT+TGG | - | chr4_3:11873237-11873256 | Msa0630180:CDS | 15.0% |
| !!! | ATGTTTTCTAAATTATATGT+AGG | - | chr4_3:11874460-11874479 | Msa0630180:intron | 15.0% |
| !! | TTTATATATTTGATTATGGT+AGG | - | chr4_3:11874810-11874829 | Msa0630180:CDS | 15.0% |
| !!! | TTTTTTTTGAGAAAAGATGA+AGG | + | chr4_3:11871976-11871995 | None:intergenic | 20.0% |
| !!! | ATGTATTATTGTTGTTTTGT+TGG | - | chr4_3:11872669-11872688 | Msa0630180:intron | 20.0% |
| !! | AAAATGCACCAAATTATAAT+AGG | + | chr4_3:11872942-11872961 | None:intergenic | 20.0% |
| !!! | TAATTTGGTGCATTTTTTTA+TGG | - | chr4_3:11872946-11872965 | Msa0630180:intron | 20.0% |
| !!! | GCTTATATACTTTTGATTAT+AGG | - | chr4_3:11873011-11873030 | Msa0630180:intron | 20.0% |
| !! | TTATGAGTAAAATCTTACTT+TGG | + | chr4_3:11873195-11873214 | None:intergenic | 20.0% |
| !! | AATCTGTCAAAAGTTATTAT+TGG | + | chr4_3:11873270-11873289 | None:intergenic | 20.0% |
| !!! | TAGAATTTGATTTTTGGTAT+TGG | - | chr4_3:11873953-11873972 | Msa0630180:CDS | 20.0% |
| !! | CATAATAGAAACAGTTTAAT+CGG | + | chr4_3:11874443-11874462 | None:intergenic | 20.0% |
| !! | ATTGTTAATCAAGAAGATTA+TGG | + | chr4_3:11874531-11874550 | None:intergenic | 20.0% |
| !! | ATAATCTTCTTGATTAACAA+TGG | - | chr4_3:11874530-11874549 | Msa0630180:intron | 20.0% |
| !!! | AGCAAAAATTAATTTTTGAG+AGG | + | chr4_3:11874706-11874725 | None:intergenic | 20.0% |
| !!! | AATTGTTTAATTGAGTTGAA+CGG | - | chr4_3:11875113-11875132 | Msa0630180:CDS | 20.0% |
| ! | AGAATTCTTCATCATACTAT+TGG | - | chr4_3:11872393-11872412 | Msa0630180:intron | 25.0% |
| !!! | AAAGTTTTCAAGTATAGGTT+CGG | - | chr4_3:11872759-11872778 | Msa0630180:intron | 25.0% |
| ! | GAACTGTAATCATTGAAAAT+AGG | + | chr4_3:11873579-11873598 | None:intergenic | 25.0% |
| !!! | AGCTTCTAGAATTTGATTTT+TGG | - | chr4_3:11873947-11873966 | Msa0630180:CDS | 25.0% |
| !!! | CGTAGCATATTTTGATAAAA+AGG | - | chr4_3:11874166-11874185 | Msa0630180:intron | 25.0% |
| ! | AAAAATGTGCTAGGAAAATT+TGG | + | chr4_3:11874390-11874409 | None:intergenic | 25.0% |
| ! | GTATTATTAAGTAGAAGCTT+AGG | + | chr4_3:11874416-11874435 | None:intergenic | 25.0% |
| ! | AAGAAGATTAATTACCTTAG+TGG | + | chr4_3:11874666-11874685 | None:intergenic | 25.0% |
| ! | ATTAAGCTGAGATTACTTTA+AGG | - | chr4_3:11875056-11875075 | Msa0630180:CDS | 25.0% |
| !! | ATTACTTTAAGGATACTTGA+GGG | - | chr4_3:11875067-11875086 | Msa0630180:CDS | 25.0% |
| !!! | TGAGGGATATTTTATTTTGT+TGG | - | chr4_3:11875084-11875103 | Msa0630180:CDS | 25.0% |
| !! | AAATAACCATTCAAAAGCAT+TGG | + | chr4_3:11875179-11875198 | None:intergenic | 25.0% |
| ! | TGTGTTGTTACATTTACTGT+TGG | - | chr4_3:11872270-11872289 | Msa0630180:intron | 30.0% |
| TTGTTACATTTACTGTTGGT+GGG | - | chr4_3:11872274-11872293 | Msa0630180:intron | 30.0% | |
| ! | GGCCTAATTCTAATGATTTT+GGG | - | chr4_3:11872364-11872383 | Msa0630180:intron | 30.0% |
| GTCCCAAAATCATTAGAATT+AGG | + | chr4_3:11872369-11872388 | None:intergenic | 30.0% | |
| TTTCATACCTATACTAGCTA+AGG | + | chr4_3:11872527-11872546 | None:intergenic | 30.0% | |
| ATTGGTTGAGTGTGTTAAAA+TGG | - | chr4_3:11872989-11873008 | Msa0630180:intron | 30.0% | |
| !! | ATACTTTTGATTATAGGCTG+TGG | - | chr4_3:11873017-11873036 | Msa0630180:intron | 30.0% |
| CAGCTTATGCTAATATAAAC+AGG | + | chr4_3:11873111-11873130 | None:intergenic | 30.0% | |
| ! | AAAATCTTACTTTGGAGACA+AGG | + | chr4_3:11873187-11873206 | None:intergenic | 30.0% |
| ! | AACATTTCATTGGAACGTTT+TGG | - | chr4_3:11873487-11873506 | Msa0630180:CDS | 30.0% |
| ! | ACATTTCATTGGAACGTTTT+GGG | - | chr4_3:11873488-11873507 | Msa0630180:CDS | 30.0% |
| TTCAATGATTACAGTTCTGT+TGG | - | chr4_3:11873582-11873601 | Msa0630180:CDS | 30.0% | |
| TATTATTGTTCAGCCTGATA+GGG | - | chr4_3:11873635-11873654 | Msa0630180:CDS | 30.0% | |
| ATCAAAACACATCCAAATGT+AGG | + | chr4_3:11873678-11873697 | None:intergenic | 30.0% | |
| !!! | ATTTGGATGTGTTTTGATGA+AGG | - | chr4_3:11873680-11873699 | Msa0630180:CDS | 30.0% |
| CTGCTTATGAGAATTATTTC+AGG | - | chr4_3:11873745-11873764 | Msa0630180:CDS | 30.0% | |
| AAAAGAACATTAACCCTCAA+AGG | + | chr4_3:11873816-11873835 | None:intergenic | 30.0% | |
| AGCTGCATTTAACTACAATT+TGG | + | chr4_3:11874023-11874042 | None:intergenic | 30.0% | |
| ATCTTCTTGATTAACAATGG+TGG | - | chr4_3:11874533-11874552 | Msa0630180:intron | 30.0% | |
| ATTGAAGTTGAAATCCATGA+TGG | - | chr4_3:11874563-11874582 | Msa0630180:intron | 30.0% | |
| ! | CAGTTCTTGATAACATTGTA+TGG | + | chr4_3:11874590-11874609 | None:intergenic | 30.0% |
| CATACAATGTTATCAAGAAC+TGG | - | chr4_3:11874588-11874607 | Msa0630180:intron | 30.0% | |
| ATGTTTCCAATATGAAGTGT+CGG | - | chr4_3:11874761-11874780 | Msa0630180:CDS | 30.0% | |
| ! | ATTTTACCGACACTTCATAT+TGG | + | chr4_3:11874770-11874789 | None:intergenic | 30.0% |
| AAGCATAAGCAATCTTTCTT+TGG | + | chr4_3:11874883-11874902 | None:intergenic | 30.0% | |
| !! | TAAATTTCTGAAGTTCACTG+AGG | + | chr4_3:11874997-11875016 | None:intergenic | 30.0% |
| ! | GATTACTTTAAGGATACTTG+AGG | - | chr4_3:11875066-11875085 | Msa0630180:CDS | 30.0% |
| ! | GTTGTTATTATGTCGTTGCA+TGG | + | chr4_3:11871952-11871971 | None:intergenic | 35.0% |
| GTTGTTACATTTACTGTTGG+TGG | - | chr4_3:11872273-11872292 | Msa0630180:intron | 35.0% | |
| AGCTTGATTAATGCAATTGC+TGG | - | chr4_3:11872300-11872319 | Msa0630180:intron | 35.0% | |
| ! | TTGCCAGTGATTTGTATTGT+TGG | - | chr4_3:11872339-11872358 | Msa0630180:intron | 35.0% |
| ! | CAGTGATTTGTATTGTTGGT+GGG | - | chr4_3:11872343-11872362 | Msa0630180:intron | 35.0% |
| ! | GGGCCTAATTCTAATGATTT+TGG | - | chr4_3:11872363-11872382 | Msa0630180:intron | 35.0% |
| !! | AGAGAGATTGAGTTGAGATT+TGG | + | chr4_3:11872476-11872495 | None:intergenic | 35.0% |
| ! | TTTTAGGCCTTAGCTAGTAT+AGG | - | chr4_3:11872517-11872536 | Msa0630180:CDS | 35.0% |
| GTGATTCATGTGAACTTCAT+TGG | - | chr4_3:11872971-11872990 | Msa0630180:intron | 35.0% | |
| ! | TACTTTGGAGACAAGGAAAA+TGG | + | chr4_3:11873180-11873199 | None:intergenic | 35.0% |
| TGACAGATTGAGTAATCCAA+TGG | - | chr4_3:11873281-11873300 | Msa0630180:CDS | 35.0% | |
| GACAGATTGAGTAATCCAAT+GGG | - | chr4_3:11873282-11873301 | Msa0630180:CDS | 35.0% | |
| ATTGAGTAATCCAATGGGAT+TGG | - | chr4_3:11873287-11873306 | Msa0630180:CDS | 35.0% | |
| ! | GCTTTTGCTACTCTTAGTTT+CGG | + | chr4_3:11873378-11873397 | None:intergenic | 35.0% |
| ATGAAATGTTTGTGATCCTC+AGG | + | chr4_3:11873477-11873496 | None:intergenic | 35.0% | |
| GAGGATCACAAACATTTCAT+TGG | - | chr4_3:11873477-11873496 | Msa0630180:CDS | 35.0% | |
| ! | CATTTCATTGGAACGTTTTG+GGG | - | chr4_3:11873489-11873508 | Msa0630180:CDS | 35.0% |
| TGAAAATAGGTCCAGCAAAT+AGG | + | chr4_3:11873566-11873585 | None:intergenic | 35.0% | |
| CTATTATTGTTCAGCCTGAT+AGG | - | chr4_3:11873634-11873653 | Msa0630180:CDS | 35.0% | |
| AAGCAGTATTGTTCCTCTTA+AGG | + | chr4_3:11873731-11873750 | None:intergenic | 35.0% | |
| ! | TTCAGGATTTTTGTTCCTGA+AGG | - | chr4_3:11873762-11873781 | Msa0630180:CDS | 35.0% |
| TCTCTAGGTTCAGATTTCAA+AGG | + | chr4_3:11873792-11873811 | None:intergenic | 35.0% | |
| ! | CTTTTGGCAATTTCAGCTTT+TGG | + | chr4_3:11873911-11873930 | None:intergenic | 35.0% |
| CAAAAGCTGAAATTGCCAAA+AGG | - | chr4_3:11873909-11873928 | Msa0630180:intron | 35.0% | |
| TGAAATTGCCAAAAGGATGT+GGG | - | chr4_3:11873916-11873935 | Msa0630180:CDS | 35.0% | |
| ! | ATTACTTACCCACATCCTTT+TGG | + | chr4_3:11873927-11873946 | None:intergenic | 35.0% |
| TGCAATTAAGGTCACATAAG+CGG | + | chr4_3:11874048-11874067 | None:intergenic | 35.0% | |
| TATGAGTTCCAGATGCAATA+TGG | - | chr4_3:11874202-11874221 | Msa0630180:intron | 35.0% | |
| CAATTGAACCATATTGCATC+TGG | + | chr4_3:11874213-11874232 | None:intergenic | 35.0% | |
| CAGATGCAATATGGTTCAAT+TGG | - | chr4_3:11874211-11874230 | Msa0630180:intron | 35.0% | |
| TGCAATATGGTTCAATTGGA+TGG | - | chr4_3:11874215-11874234 | Msa0630180:intron | 35.0% | |
| CTTAGGAGAAAAAATGTGCT+AGG | + | chr4_3:11874399-11874418 | None:intergenic | 35.0% | |
| TAACATTGTATGGTCCATCA+TGG | + | chr4_3:11874580-11874599 | None:intergenic | 35.0% | |
| ATCAAGAACTGGAATTACAC+TGG | - | chr4_3:11874599-11874618 | Msa0630180:intron | 35.0% | |
| AGATTGCTTATGCTTCATTG+AGG | - | chr4_3:11874888-11874907 | Msa0630180:CDS | 35.0% | |
| TAGCAAAGAGTTGCTTGAAT+GGG | - | chr4_3:11874933-11874952 | Msa0630180:CDS | 35.0% | |
| !! | AGCATTGGTGCAAAAAAAGT+TGG | + | chr4_3:11875164-11875183 | None:intergenic | 35.0% |
| ! | TTTGCACCAATGCTTTTGAA+TGG | - | chr4_3:11875170-11875189 | Msa0630180:CDS | 35.0% |
| ! | TGGTGATTTGCATGTTTCGA+GGG | + | chr4_3:11871932-11871951 | None:intergenic | 40.0% |
| ! | ATGGTGATTTGCATGTTTCG+AGG | + | chr4_3:11871933-11871952 | None:intergenic | 40.0% |
| !! | GAAACAGTGCTGTTTGATGA+AGG | + | chr4_3:11872006-11872025 | None:intergenic | 40.0% |
| !! | TGAAGGGGATTTTTGGATTG+TGG | + | chr4_3:11872028-11872047 | None:intergenic | 40.0% |
| !!! | ATTGGGTTGAAGGGGATTTT+TGG | + | chr4_3:11872035-11872054 | None:intergenic | 40.0% |
| !! | TAACGTTAGGTTGAAGTCAC+CGG | + | chr4_3:11872142-11872161 | None:intergenic | 40.0% |
| !! | CAACCAACGTTTTTCAGCTT+CGG | + | chr4_3:11872186-11872205 | None:intergenic | 40.0% |
| ! | TGATGGATATGCAAGGTCTA+GGG | - | chr4_3:11872236-11872255 | Msa0630180:CDS | 40.0% |
| CCACCAACAATACAAATCAC+TGG | + | chr4_3:11872345-11872364 | None:intergenic | 40.0% | |
| ! | CCAGTGATTTGTATTGTTGG+TGG | - | chr4_3:11872342-11872361 | Msa0630180:intron | 40.0% |
| CTAAGTTCCTGGCTAAAATC+AGG | + | chr4_3:11872423-11872442 | None:intergenic | 40.0% | |
| !! | CTGATTTTAGCCAGGAACTT+AGG | - | chr4_3:11872421-11872440 | Msa0630180:intron | 40.0% |
| TCTGAAAACACCTAAGTTCC+TGG | + | chr4_3:11872434-11872453 | None:intergenic | 40.0% | |
| !! | ATTGAGTTGAGATTTGGACC+TGG | + | chr4_3:11872470-11872489 | None:intergenic | 40.0% |
| GGAATTAGTCCTTTAGCAGA+TGG | + | chr4_3:11873456-11873475 | None:intergenic | 40.0% | |
| TGCTAAAGGACTAATTCCTG+AGG | - | chr4_3:11873458-11873477 | Msa0630180:CDS | 40.0% | |
| ATTGGAGATGGTCCTACATT+TGG | - | chr4_3:11873663-11873682 | Msa0630180:CDS | 40.0% | |
| GATTTCAAAGGCAAACCTTC+AGG | + | chr4_3:11873780-11873799 | None:intergenic | 40.0% | |
| CTGAAATTGCCAAAAGGATG+TGG | - | chr4_3:11873915-11873934 | Msa0630180:CDS | 40.0% | |
| CCTCAATGCAACTGCAATTA+AGG | + | chr4_3:11874060-11874079 | None:intergenic | 40.0% | |
| CCTTAATTGCAGTTGCATTG+AGG | - | chr4_3:11874057-11874076 | Msa0630180:CDS | 40.0% | |
| TATGATGTGCAAGACAAACC+TGG | + | chr4_3:11874318-11874337 | None:intergenic | 40.0% | |
| TTATATGTAGGTGACAGCAC+AGG | - | chr4_3:11874472-11874491 | Msa0630180:intron | 40.0% | |
| ! | TTGGTTGATGCTATCCACAA+TGG | - | chr4_3:11874623-11874642 | Msa0630180:intron | 40.0% |
| AGCAATTTCCTTGACCATTG+TGG | + | chr4_3:11874640-11874659 | None:intergenic | 40.0% | |
| ACAATGGTCAAGGAAATTGC+TGG | - | chr4_3:11874639-11874658 | Msa0630180:CDS | 40.0% | |
| ! | ATGGTAGGTCTTTTGTGAAG+AGG | - | chr4_3:11874825-11874844 | Msa0630180:CDS | 40.0% |
| CATTGAGGTGATTGTTCACA+AGG | - | chr4_3:11874903-11874922 | Msa0630180:CDS | 40.0% | |
| CTAGCAAAGAGTTGCTTGAA+TGG | - | chr4_3:11874932-11874951 | Msa0630180:CDS | 40.0% | |
| AGCAAAGAGTTGCTTGAATG+GGG | - | chr4_3:11874934-11874953 | Msa0630180:CDS | 40.0% | |
| ! | TCTGAAGTTCACTGAGGATT+AGG | + | chr4_3:11874991-11875010 | None:intergenic | 40.0% |
| TTCAGATGAGGCTAGGGATT+GGG | + | chr4_3:11872052-11872071 | None:intergenic | 45.0% | |
| ATTCAGATGAGGCTAGGGAT+TGG | + | chr4_3:11872053-11872072 | None:intergenic | 45.0% | |
| ! | GGTTGATTCAGATGAGGCTA+GGG | + | chr4_3:11872058-11872077 | None:intergenic | 45.0% |
| ! | ACCTAGGGTTGATTCAGATG+AGG | + | chr4_3:11872064-11872083 | None:intergenic | 45.0% |
| !! | AACGTTAGGTTGAAGTCACC+GGG | + | chr4_3:11872141-11872160 | None:intergenic | 45.0% |
| TCAGGTGATCGAGTAACGTT+AGG | + | chr4_3:11872155-11872174 | None:intergenic | 45.0% | |
| GAACCGAAGCTGAAAAACGT+TGG | - | chr4_3:11872180-11872199 | Msa0630180:CDS | 45.0% | |
| TGCTGTAACGAACTCAATGC+TGG | - | chr4_3:11872204-11872223 | Msa0630180:CDS | 45.0% | |
| AATGCTGGATATGCTGCTGA+TGG | - | chr4_3:11872219-11872238 | Msa0630180:CDS | 45.0% | |
| ! | ATGCTGCTGATGGATATGCA+AGG | - | chr4_3:11872229-11872248 | Msa0630180:CDS | 45.0% |
| ! | CTGATGGATATGCAAGGTCT+AGG | - | chr4_3:11872235-11872254 | Msa0630180:CDS | 45.0% |
| GATGGATATGCAAGGTCTAG+GGG | - | chr4_3:11872237-11872256 | Msa0630180:CDS | 45.0% | |
| !! | TGGTTTGCCTGATTTTAGCC+AGG | - | chr4_3:11872413-11872432 | Msa0630180:intron | 45.0% |
| ! | TCAGACTGTTACTTGCTACC+AGG | - | chr4_3:11872449-11872468 | Msa0630180:CDS | 45.0% |
| ATAGGCTGTGGTCAACAACT+TGG | - | chr4_3:11873029-11873048 | Msa0630180:intron | 45.0% | |
| ACTGAAAGTAGGGTGAGGAA+TGG | + | chr4_3:11873145-11873164 | None:intergenic | 45.0% | |
| CAGGTTCACGACTGAAAGTA+GGG | + | chr4_3:11873155-11873174 | None:intergenic | 45.0% | |
| ACAGGTTCACGACTGAAAGT+AGG | + | chr4_3:11873156-11873175 | None:intergenic | 45.0% | |
| GGAGACAAGGAAAATGGAAC+AGG | + | chr4_3:11873174-11873193 | None:intergenic | 45.0% | |
| GAGTAATCCAATGGGATTGG+AGG | - | chr4_3:11873290-11873309 | Msa0630180:CDS | 45.0% | |
| GTGAAACCAGTACTAGTAGC+CGG | - | chr4_3:11873351-11873370 | Msa0630180:CDS | 45.0% | |
| TGCTACTCTTAGTTTCGGAC+CGG | + | chr4_3:11873373-11873392 | None:intergenic | 45.0% | |
| TCCTTTAGCAGATGGCATGA+CGG | + | chr4_3:11873448-11873467 | None:intergenic | 45.0% | |
| ! | TGCATTTTGTGCCGAGATAG+TGG | - | chr4_3:11873524-11873543 | Msa0630180:CDS | 45.0% |
| !! | TTGTGCCGAGATAGTGGAAT+CGG | - | chr4_3:11873530-11873549 | Msa0630180:CDS | 45.0% |
| ! | ATCAGCCGATTCCACTATCT+CGG | + | chr4_3:11873538-11873557 | None:intergenic | 45.0% |
| GCTGATGCATACCTATTTGC+TGG | - | chr4_3:11873552-11873571 | Msa0630180:CDS | 45.0% | |
| TCTCCAATCACAACCCTATC+AGG | + | chr4_3:11873651-11873670 | None:intergenic | 45.0% | |
| GATAGGGTTGTGATTGGAGA+TGG | - | chr4_3:11873651-11873670 | Msa0630180:CDS | 45.0% | |
| TGAACCTAGAGAGCCTTTGA+GGG | - | chr4_3:11873800-11873819 | Msa0630180:CDS | 45.0% | |
| TTAACCCTCAAAGGCTCTCT+AGG | + | chr4_3:11873807-11873826 | None:intergenic | 45.0% | |
| CAGTTGCATTGAGGTCACAT+AGG | - | chr4_3:11874066-11874085 | Msa0630180:intron | 45.0% | |
| GGTTCAATTGGATGGTCTGT+TGG | - | chr4_3:11874223-11874242 | Msa0630180:intron | 45.0% | |
| AAGCGAGTGATTGCTTGCAT+TGG | - | chr4_3:11874280-11874299 | Msa0630180:intron | 45.0% | |
| ! | GTGATTGCTTGCATTGGTGA+TGG | - | chr4_3:11874286-11874305 | Msa0630180:intron | 45.0% |
| !! | CATTGGTGATGGAAGTTTCC+AGG | - | chr4_3:11874297-11874316 | Msa0630180:intron | 45.0% |
| ! | GAACTGGAATTACACTGGCT+TGG | - | chr4_3:11874604-11874623 | Msa0630180:intron | 45.0% |
| GATGCTATCCACAATGGTCA+AGG | - | chr4_3:11874629-11874648 | Msa0630180:intron | 45.0% | |
| AGGAAATTGCTGGACCACTA+AGG | - | chr4_3:11874649-11874668 | Msa0630180:CDS | 45.0% | |
| GAAGCAATTCAGACAGCAAC+AGG | - | chr4_3:11874856-11874875 | Msa0630180:CDS | 45.0% | |
| AGTTGCTTGAATGGGGATCA+AGG | - | chr4_3:11874941-11874960 | Msa0630180:CDS | 45.0% | |
| GTTGCTTGAATGGGGATCAA+GGG | - | chr4_3:11874942-11874961 | Msa0630180:CDS | 45.0% | |
| TTCACTGAGGATTAGGAGGA+CGG | + | chr4_3:11874984-11875003 | None:intergenic | 45.0% | |
| GAAGTTCACTGAGGATTAGG+AGG | + | chr4_3:11874988-11875007 | None:intergenic | 45.0% | |
| !! | TTAATTTATATATTTGATTA+TGG | - | chr4_3:11874806-11874825 | Msa0630180:CDS | 5.0% |
| TGCATGTTTCGAGGGATCCT+AGG | + | chr4_3:11871924-11871943 | None:intergenic | 50.0% | |
| !! | AGGCTAGGGATTGGGTTGAA+GGG | + | chr4_3:11872044-11872063 | None:intergenic | 50.0% |
| ! | GGGTTGATTCAGATGAGGCT+AGG | + | chr4_3:11872059-11872078 | None:intergenic | 50.0% |
| GCCTCATCTGAATCAACCCT+AGG | - | chr4_3:11872060-11872079 | Msa0630180:three_prime_UTR | 50.0% | |
| !! | TACCGACTTCCACTAGTCGT+CGG | + | chr4_3:11872098-11872117 | None:intergenic | 50.0% |
| ! | ACCGATATTTTCACCGTCCC+CGG | - | chr4_3:11872120-11872139 | Msa0630180:CDS | 50.0% |
| ACCGGGGACGGTGAAAATAT+CGG | + | chr4_3:11872124-11872143 | None:intergenic | 50.0% | |
| !! | ACGTTAGGTTGAAGTCACCG+GGG | + | chr4_3:11872140-11872159 | None:intergenic | 50.0% |
| ! | TATGCAAGGTCTAGGGGTGT+AGG | - | chr4_3:11872243-11872262 | Msa0630180:CDS | 50.0% |
| TCACGACTGAAAGTAGGGTG+AGG | + | chr4_3:11873150-11873169 | None:intergenic | 50.0% | |
| ! | GCAGATGGCATGACGGAATA+TGG | + | chr4_3:11873441-11873460 | None:intergenic | 50.0% |
| TCCGTCATGCCATCTGCTAA+AGG | - | chr4_3:11873444-11873463 | Msa0630180:CDS | 50.0% | |
| CAGCCTGATAGGGTTGTGAT+TGG | - | chr4_3:11873645-11873664 | Msa0630180:CDS | 50.0% | |
| CTGAACCTAGAGAGCCTTTG+AGG | - | chr4_3:11873799-11873818 | Msa0630180:CDS | 50.0% | |
| ACTGCTGTTATTGCCGAGAC+AGG | - | chr4_3:11873867-11873886 | Msa0630180:intron | 50.0% | |
| CTGCTGTTATTGCCGAGACA+GGG | - | chr4_3:11873868-11873887 | Msa0630180:intron | 50.0% | |
| TGCTGTTATTGCCGAGACAG+GGG | - | chr4_3:11873869-11873888 | Msa0630180:intron | 50.0% | |
| AAACCATGAGTCCCCTGTCT+CGG | + | chr4_3:11873883-11873902 | None:intergenic | 50.0% | |
| TGGTCTGTTGGTGCAACTCT+CGG | - | chr4_3:11874235-11874254 | Msa0630180:intron | 50.0% | |
| CGGATATGCTCAAGCTGTTC+CGG | - | chr4_3:11874255-11874274 | Msa0630180:intron | 50.0% | |
| CAAGCAATCACTCGCTTCTC+CGG | + | chr4_3:11874277-11874296 | None:intergenic | 50.0% | |
| GTGTCCACAATGCTGAGATG+TGG | - | chr4_3:11874497-11874516 | Msa0630180:intron | 50.0% | |
| CTGTCCACATCTCAGCATTG+TGG | + | chr4_3:11874504-11874523 | None:intergenic | 50.0% | |
| !! | GGCTAGGGATTGGGTTGAAG+GGG | + | chr4_3:11872043-11872062 | None:intergenic | 55.0% |
| !! | GAGGCTAGGGATTGGGTTGA+AGG | + | chr4_3:11872045-11872064 | None:intergenic | 55.0% |
| ! | ACCGACTTCCACTAGTCGTC+GGG | + | chr4_3:11872097-11872116 | None:intergenic | 55.0% |
| ! | TAGGTTGAAGTCACCGGGGA+CGG | + | chr4_3:11872136-11872155 | None:intergenic | 55.0% |
| TCAGCTTCGGTTCAGCGATC+AGG | + | chr4_3:11872173-11872192 | None:intergenic | 55.0% | |
| ACTGCTGCCTCCAATCCCAT+TGG | + | chr4_3:11873300-11873319 | None:intergenic | 55.0% | |
| AATGGGATTGGAGGCAGCAG+TGG | - | chr4_3:11873299-11873318 | Msa0630180:CDS | 55.0% | |
| TTCGGACCGGCTACTAGTAC+TGG | + | chr4_3:11873360-11873379 | None:intergenic | 55.0% | |
| ! | CACTTGCGAAGCGCCTTAAG+AGG | - | chr4_3:11873715-11873734 | Msa0630180:CDS | 55.0% |
| TCGGGCAAGGTGGCTACCTA+GGG | + | chr4_3:11872079-11872098 | None:intergenic | 60.0% | |
| CTTCCACTAGTCGTCGGGCA+AGG | + | chr4_3:11872092-11872111 | None:intergenic | 60.0% | |
| GCCCGACGACTAGTGGAAGT+CGG | - | chr4_3:11872093-11872112 | Msa0630180:exon | 60.0% | |
| TTGCCGAGACAGGGGACTCA+TGG | - | chr4_3:11873877-11873896 | Msa0630180:intron | 60.0% | |
| GTCGGGCAAGGTGGCTACCT+AGG | + | chr4_3:11872080-11872099 | None:intergenic | 65.0% | |
| CCACTAGTCGTCGGGCAAGG+TGG | + | chr4_3:11872089-11872108 | None:intergenic | 65.0% | |
| CCACCTTGCCCGACGACTAG+TGG | - | chr4_3:11872086-11872105 | Msa0630180:three_prime_UTR | 65.0% | |
| GGCAGCAGTGGAAGCAGCTG+CGG | - | chr4_3:11873311-11873330 | Msa0630180:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 11871910 | 11875199 | 11871910 | ID=Msa0630180;Name=Msa0630180 |
| chr4_3 | mRNA | 11871910 | 11875199 | 11871910 | ID=Msa0630180-mRNA-1;Parent=Msa0630180;Name=Msa0630180-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|1|0.83|1|1|1|6|197|617 |
| chr4_3 | exon | 11871910 | 11872277 | 11871910 | ID=Msa0630180-mRNA-1:exon:3548;Parent=Msa0630180-mRNA-1 |
| chr4_3 | exon | 11872439 | 11872627 | 11872439 | ID=Msa0630180-mRNA-1:exon:3547;Parent=Msa0630180-mRNA-1 |
| chr4_3 | exon | 11872791 | 11872908 | 11872791 | ID=Msa0630180-mRNA-1:exon:3546;Parent=Msa0630180-mRNA-1 |
| chr4_3 | exon | 11873172 | 11873822 | 11873172 | ID=Msa0630180-mRNA-1:exon:3545;Parent=Msa0630180-mRNA-1 |
| chr4_3 | exon | 11873913 | 11874076 | 11873913 | ID=Msa0630180-mRNA-1:exon:3544;Parent=Msa0630180-mRNA-1 |
| chr4_3 | exon | 11874639 | 11875199 | 11874639 | ID=Msa0630180-mRNA-1:exon:3543;Parent=Msa0630180-mRNA-1 |
| chr4_3 | CDS | 11874639 | 11875199 | 11874639 | ID=Msa0630180-mRNA-1:cds;Parent=Msa0630180-mRNA-1 |
| chr4_3 | CDS | 11873913 | 11874076 | 11873913 | ID=Msa0630180-mRNA-1:cds;Parent=Msa0630180-mRNA-1 |
| chr4_3 | CDS | 11873172 | 11873822 | 11873172 | ID=Msa0630180-mRNA-1:cds;Parent=Msa0630180-mRNA-1 |
| chr4_3 | CDS | 11872791 | 11872908 | 11872791 | ID=Msa0630180-mRNA-1:cds;Parent=Msa0630180-mRNA-1 |
| chr4_3 | CDS | 11872439 | 11872627 | 11872439 | ID=Msa0630180-mRNA-1:cds;Parent=Msa0630180-mRNA-1 |
| chr4_3 | CDS | 11872107 | 11872277 | 11872107 | ID=Msa0630180-mRNA-1:cds;Parent=Msa0630180-mRNA-1 |
| chr4_3 | three_prime_UTR | 11871910 | 11872106 | 11871910 | ID=Msa0630180-mRNA-1:three_prime_utr;Parent=Msa0630180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
