Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0537930 | XP_024637107.1 | 95.525 | 581 | 26 | 0 | 1 | 581 | 1 | 581 | 0.0 | 1130 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0537930 | sp|Q9SK32|MAIL1_ARATH | 30.859 | 256 | 156 | 8 | 40 | 276 | 47 | 300 | 3.50e-25 | 112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0537930 | A0A396I1A4 | 95.525 | 581 | 26 | 0 | 1 | 581 | 1 | 581 | 0.0 | 1130 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0537930 | Msa0594080 | 0.904230 | 1.524514e-79 | -8.615850e-47 |
| Msa0537930 | Msa0641240 | 0.943747 | 6.880589e-103 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0537930 | MtrunA17_Chr4g0012881 | 95.525 | 581 | 26 | 0 | 1 | 581 | 1 | 581 | 0.0 | 1130 |
| Msa0537930 | MtrunA17_Chr3g0097251 | 28.205 | 234 | 154 | 4 | 39 | 258 | 54 | 287 | 9.94e-23 | 102 |
| Msa0537930 | MtrunA17_Chr6g0451401 | 25.092 | 271 | 160 | 8 | 47 | 277 | 70 | 337 | 2.16e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0537930 | AT2G25010.1 | 30.859 | 256 | 156 | 8 | 40 | 276 | 47 | 300 | 3.56e-26 | 112 |
| Msa0537930 | AT2G04865.2 | 31.330 | 233 | 146 | 5 | 40 | 258 | 49 | 281 | 2.97e-25 | 110 |
| Msa0537930 | AT2G04865.1 | 31.330 | 233 | 146 | 5 | 40 | 258 | 49 | 281 | 2.97e-25 | 110 |
| Msa0537930 | AT1G48120.1 | 26.667 | 255 | 156 | 8 | 64 | 289 | 80 | 332 | 7.17e-18 | 88.6 |
Find 130 sgRNAs with CRISPR-Local
Find 350 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACATGCTATCCTTGATTT+TGG | 0.077076 | 4_1:-16997066 | Msa0537930:three_prime_UTR |
| ATTAGACGCTGCTTTAATTT+TGG | 0.103482 | 4_1:-17000613 | Msa0537930:CDS |
| ATATCTTGATCTTGCAAATT+TGG | 0.144782 | 4_1:+16998861 | None:intergenic |
| GGGAATTTGGATGATGTTTC+TGG | 0.151625 | 4_1:-17000348 | Msa0537930:CDS |
| TATAATATTATCTGTTTGTT+AGG | 0.192368 | 4_1:-16997030 | Msa0537930:three_prime_UTR |
| ACGGGGTACTTCAAGGTTTA+AGG | 0.204094 | 4_1:-16998787 | Msa0537930:CDS |
| TTGATTAACAGGATGATTTA+AGG | 0.204191 | 4_1:-16997294 | Msa0537930:intron |
| GTATATATTTGCAGATAATT+TGG | 0.214541 | 4_1:-16998410 | Msa0537930:intron |
| AAGCCCGAAAATCTGATTAT+TGG | 0.271274 | 4_1:-16997492 | Msa0537930:CDS |
| GAGATCGGTTCCGGGGAAAT+TGG | 0.275217 | 4_1:-17000645 | Msa0537930:CDS |
| AAGCAAGGCTTGATTCTATT+GGG | 0.294387 | 4_1:-17000476 | Msa0537930:CDS |
| CTTCAATTTCTTCCATTTGT+TGG | 0.318421 | 4_1:+16997239 | None:intergenic |
| CCGAATAGAAAGAGATATTA+TGG | 0.319624 | 4_1:-16997113 | Msa0537930:CDS |
| AGCCCGAAAATCTGATTATT+GGG | 0.322283 | 4_1:-16997491 | Msa0537930:CDS |
| TGAATCCACTTTCCCATCAT+TGG | 0.324060 | 4_1:+17000389 | None:intergenic |
| TGGAAGCTCCAACCTACTTC+TGG | 0.333647 | 4_1:-16998390 | Msa0537930:CDS |
| TAGGTGGCAACGAGGATAAA+AGG | 0.334124 | 4_1:-16998326 | Msa0537930:CDS |
| GAAGCAAGGCTTGATTCTAT+TGG | 0.348379 | 4_1:-17000477 | Msa0537930:CDS |
| TTAATTGATCGTTAAGTTGT+TGG | 0.353496 | 4_1:-16996896 | Msa0537930:three_prime_UTR |
| CCATAATATCTCTTTCTATT+CGG | 0.354580 | 4_1:+16997113 | None:intergenic |
| TGTTTGTTAGGGGTTGTGTT+AGG | 0.363724 | 4_1:-16997018 | Msa0537930:three_prime_UTR |
| GCTATTTCGCGAACGGGATT+CGG | 0.371178 | 4_1:-17000756 | Msa0537930:CDS |
| CCCTCCAATTCGAGCATTGA+TGG | 0.372854 | 4_1:-16997795 | Msa0537930:CDS |
| TTCACCATCAATGCTCGAAT+TGG | 0.379321 | 4_1:+16997791 | None:intergenic |
| TTTATTCAATTGCATCAGTT+TGG | 0.382994 | 4_1:+16997086 | None:intergenic |
| ATTACCTGGCAAGAATTTCA+TGG | 0.387266 | 4_1:+16996969 | None:intergenic |
| TAAATCTCACCCGAGGCAAC+GGG | 0.387949 | 4_1:-16998805 | Msa0537930:CDS |
| ATAATATTATCTGTTTGTTA+GGG | 0.388782 | 4_1:-16997029 | Msa0537930:three_prime_UTR |
| TGTGGGGCACCGTGTGGAGC+TGG | 0.397933 | 4_1:-17000580 | Msa0537930:CDS |
| TCTGAATTGGAAGAGGAGTA+TGG | 0.398288 | 4_1:-17000540 | Msa0537930:CDS |
| TCCACACGGTGCCCCACAAC+TGG | 0.403268 | 4_1:+17000585 | None:intergenic |
| AAGAAATTTAAATTGCTTTG+CGG | 0.403574 | 4_1:-16997137 | Msa0537930:CDS |
| GTACCGGCGGTTCTGTAGCT+TGG | 0.423668 | 4_1:+17002544 | None:intergenic |
| TTAGGGGTTGTGTTAGGACT+AGG | 0.429515 | 4_1:-16997012 | Msa0537930:three_prime_UTR |
| AGATCTGCTATTTCGCGAAC+GGG | 0.434123 | 4_1:-17000762 | Msa0537930:CDS |
| TCTATCAGAATTTCTTCAAT+CGG | 0.439597 | 4_1:-17002573 | Msa0537930:CDS |
| CGATTTGAAATAATGAAAGT+AGG | 0.442754 | 4_1:+17002650 | None:intergenic |
| TACCGGCGGTTCTGTAGCTT+GGG | 0.446327 | 4_1:+17002545 | None:intergenic |
| GCACCGTGTGGAGCTGGCGG+AGG | 0.448066 | 4_1:-17000574 | Msa0537930:CDS |
| GCTGAAAATAAGCCAACAAA+TGG | 0.448086 | 4_1:-16997251 | Msa0537930:CDS |
| ACCTTGTTAAGAGAATGATT+TGG | 0.455071 | 4_1:+17000717 | None:intergenic |
| CGAGGCAACGGGGTACTTCA+AGG | 0.456523 | 4_1:-16998794 | Msa0537930:CDS |
| CCTTTCCTCGTGTGTGTCGA+TGG | 0.466858 | 4_1:-16998836 | Msa0537930:CDS |
| CATAGTCAGAGCTGAATGTA+GGG | 0.468065 | 4_1:+16997409 | None:intergenic |
| GAGGAAGGAGGTAGAGAAGA+AGG | 0.469014 | 4_1:-16997540 | Msa0537930:CDS |
| ACCATCAATGCTCGAATTGG+AGG | 0.477384 | 4_1:+16997794 | None:intergenic |
| AGAGAAGAAGAGATGAATGC+GGG | 0.477553 | 4_1:-16997606 | Msa0537930:CDS |
| TGAAAGTAGGGAAATGAAAA+CGG | 0.479072 | 4_1:+17002663 | None:intergenic |
| TTGAAGTACCCCGTTGCCTC+GGG | 0.479550 | 4_1:+16998796 | None:intergenic |
| GAAGCGCGTTCAAAGTTTAA+CGG | 0.481367 | 4_1:-17000793 | Msa0537930:CDS |
| TTCTTCCAATGATGGGAAAG+TGG | 0.482670 | 4_1:-17000394 | Msa0537930:CDS |
| CTTGAAGTACCCCGTTGCCT+CGG | 0.482898 | 4_1:+16998795 | None:intergenic |
| TTCTTCTCTACCTCCTTCCT+CGG | 0.486598 | 4_1:+16997542 | None:intergenic |
| GATTTGAAATAATGAAAGTA+GGG | 0.490533 | 4_1:+17002651 | None:intergenic |
| TAAGGATCTACATGACGATC+AGG | 0.492858 | 4_1:-16998769 | Msa0537930:intron |
| ATTTGTAACTCTCCAGAAGT+AGG | 0.494468 | 4_1:+16998378 | None:intergenic |
| TTACTGAGGTAATGGAGGCT+TGG | 0.496261 | 4_1:-17000689 | Msa0537930:CDS |
| AGCGTTTCAGCAACCAACTC+TGG | 0.497300 | 4_1:+16997450 | None:intergenic |
| TCGAGCATTGATGGTGAAGT+AGG | 0.502854 | 4_1:-16997786 | Msa0537930:CDS |
| CTGATTATTGGGGACAAAGT+AGG | 0.505014 | 4_1:-16997480 | Msa0537930:CDS |
| GTAACTCTCCAGAAGTAGGT+TGG | 0.512066 | 4_1:+16998382 | None:intergenic |
| TGTGTCAGTGGCTTGATAAG+AGG | 0.514005 | 4_1:-17000293 | Msa0537930:CDS |
| CAGTCAGCTGCCCAAAATCA+AGG | 0.516730 | 4_1:+16997055 | None:intergenic |
| ACATAGTCAGAGCTGAATGT+AGG | 0.517491 | 4_1:+16997408 | None:intergenic |
| GTAAATCTCACCCGAGGCAA+CGG | 0.518963 | 4_1:-16998806 | Msa0537930:CDS |
| TTAACAGGATGATTTAAGGA+AGG | 0.522322 | 4_1:-16997290 | Msa0537930:intron |
| TCACAAGTGCTCAACCTTGT+GGG | 0.522508 | 4_1:+16997873 | None:intergenic |
| ATCACAAGTGCTCAACCTTG+TGG | 0.528515 | 4_1:+16997872 | None:intergenic |
| TGATGAGTTGAAGAAAGAGC+TGG | 0.537111 | 4_1:-16997170 | Msa0537930:CDS |
| CTTTCCTCGTGTGTGTCGAT+GGG | 0.543351 | 4_1:-16998835 | Msa0537930:CDS |
| GTCTATGCTCAAATTTGTGA+AGG | 0.545820 | 4_1:+16997719 | None:intergenic |
| TTGAGCATAGATGAGGAAGG+AGG | 0.553551 | 4_1:-16997630 | Msa0537930:CDS |
| AAGCCTCCATTACCTCAGTA+AGG | 0.553879 | 4_1:+17000691 | None:intergenic |
| AGGTGGCAACGAGGATAAAA+GGG | 0.559740 | 4_1:-16998325 | Msa0537930:CDS |
| TAGAGAAGAAGAGATGAATG+CGG | 0.560084 | 4_1:-16997607 | Msa0537930:CDS |
| AGAGAAGAAGAGATGAATGC+GGG | 0.561139 | 4_1:-16997684 | Msa0537930:CDS |
| GAAACCATGAAATTCTTGCC+AGG | 0.562018 | 4_1:-16996973 | Msa0537930:three_prime_UTR |
| CACAAATTTGAGCATAGATG+AGG | 0.563310 | 4_1:-16997637 | Msa0537930:CDS |
| CCATCAATGCTCGAATTGGA+GGG | 0.563743 | 4_1:+16997795 | None:intergenic |
| CGCCCAAGCTACAGAACCGC+CGG | 0.563793 | 4_1:-17002547 | Msa0537930:intron |
| TCCAAATCATTCTCTTAACA+AGG | 0.567181 | 4_1:-17000718 | Msa0537930:CDS |
| GATAACAATGTGCAGTATGT+TGG | 0.569504 | 4_1:-17000267 | Msa0537930:CDS |
| CACAAATTTGAGCATAGACA+AGG | 0.572292 | 4_1:-16997715 | Msa0537930:CDS |
| GGGGTTGTGTTAGGACTAGG+AGG | 0.572619 | 4_1:-16997009 | Msa0537930:three_prime_UTR |
| GGGGCACCGTGTGGAGCTGG+CGG | 0.574824 | 4_1:-17000577 | Msa0537930:CDS |
| TGTTCGATAAATTCTCTCTA+CGG | 0.575069 | 4_1:+16997212 | None:intergenic |
| TCCAGTTGTGGGGCACCGTG+TGG | 0.576327 | 4_1:-17000586 | Msa0537930:CDS |
| ATCTATGCTCAAATTTGTGA+AGG | 0.576382 | 4_1:+16997641 | None:intergenic |
| TTATTGAAGATTTGTGTCAG+TGG | 0.579200 | 4_1:-17000305 | Msa0537930:CDS |
| TTTCCTTACTGAGGTAATGG+AGG | 0.579719 | 4_1:-17000694 | Msa0537930:CDS |
| CCATCGACACACACGAGGAA+AGG | 0.580239 | 4_1:+16998836 | None:intergenic |
| GATGAACAGTTCTAATTACC+TGG | 0.580455 | 4_1:+16996955 | None:intergenic |
| TGCTTCACATGCGAAGAGAA+AGG | 0.580579 | 4_1:-17000517 | Msa0537930:CDS |
| TAAACTAAATCCAATTTCCC+CGG | 0.585016 | 4_1:+17000635 | None:intergenic |
| TAATATTATCTGTTTGTTAG+GGG | 0.585387 | 4_1:-16997028 | Msa0537930:three_prime_UTR |
| GCTCCTCCGCCAGCTCCACA+CGG | 0.591770 | 4_1:+17000571 | None:intergenic |
| AAGATCTGCTATTTCGCGAA+CGG | 0.594961 | 4_1:-17000763 | Msa0537930:CDS |
| CACAAATTTGAGCATATCCG+AGG | 0.597633 | 4_1:-16997559 | Msa0537930:CDS |
| ATCAATGCTCGAATTGGAGG+GGG | 0.600981 | 4_1:+16997797 | None:intergenic |
| AGGAAGGAGGTAGAGAAGAA+GGG | 0.604766 | 4_1:-16997539 | Msa0537930:CDS |
| ACATGAGCAGGTTTCAGATG+TGG | 0.606419 | 4_1:-16997979 | Msa0537930:intron |
| CATCAATGCTCGAATTGGAG+GGG | 0.607072 | 4_1:+16997796 | None:intergenic |
| AGTATCTCTAGTAAGATACA+TGG | 0.611272 | 4_1:-16997939 | Msa0537930:CDS |
| AGCAAGGCTTGATTCTATTG+GGG | 0.619954 | 4_1:-17000475 | Msa0537930:CDS |
| GAATGCGGGCAATCTCATAA+CGG | 0.623936 | 4_1:-16997670 | Msa0537930:CDS |
| TATTGAAAATCTGATAGTAG+AGG | 0.629533 | 4_1:-16997823 | Msa0537930:CDS |
| AACAATGTGCAGTATGTTGG+TGG | 0.629918 | 4_1:-17000264 | Msa0537930:CDS |
| TAGAGAAGAAGAGATGAATG+CGG | 0.629988 | 4_1:-16997685 | Msa0537930:CDS |
| AGTAGGAAGAGAGCCAGAGT+TGG | 0.631049 | 4_1:-16997463 | Msa0537930:CDS |
| GCCCGAAAATCTGATTATTG+GGG | 0.632581 | 4_1:-16997490 | Msa0537930:CDS |
| AAGATACATGGAGAAGACGA+GGG | 0.635295 | 4_1:-16997927 | Msa0537930:CDS |
| CTATGACTACTCTTGAAGCA+AGG | 0.635436 | 4_1:-17000491 | Msa0537930:CDS |
| GGATATGCTCAAATTTGTGA+AGG | 0.646774 | 4_1:+16997563 | None:intergenic |
| TAAGATACATGGAGAAGACG+AGG | 0.646778 | 4_1:-16997928 | Msa0537930:CDS |
| AATTTGAGCATATCCGAGGA+AGG | 0.647829 | 4_1:-16997555 | Msa0537930:CDS |
| TAGTCAGAGCTGAATGTAGG+GGG | 0.650037 | 4_1:+16997411 | None:intergenic |
| TGAGTGAGCTTAAACACTAG+TGG | 0.668228 | 4_1:+17002692 | None:intergenic |
| GAATGCGGGAAATCTCATAA+CGG | 0.673472 | 4_1:-16997592 | Msa0537930:CDS |
| AAAGCAATGGGGTTACTAGG+TGG | 0.677681 | 4_1:-16998342 | Msa0537930:CDS |
| TTGAGCATATCCGAGGAAGG+AGG | 0.679006 | 4_1:-16997552 | Msa0537930:CDS |
| ATAGTCAGAGCTGAATGTAG+GGG | 0.680263 | 4_1:+16997410 | None:intergenic |
| ATCATAGTAAATCTCACCCG+AGG | 0.686338 | 4_1:-16998812 | Msa0537930:CDS |
| TGCGGGAAATCTCATAACGG+AGG | 0.691741 | 4_1:-16997589 | Msa0537930:CDS |
| TAGTAGAGGACACTCCCACA+AGG | 0.691801 | 4_1:-16997887 | Msa0537930:CDS |
| TGATCCCATCGACACACACG+AGG | 0.697389 | 4_1:+16998831 | None:intergenic |
| AATTTGAGCATAGATGAGGA+AGG | 0.700153 | 4_1:-16997633 | Msa0537930:CDS |
| GGTTGCTGAAACGCTCATCG+TGG | 0.712316 | 4_1:-16997442 | Msa0537930:CDS |
| TTGAGCATAGACAAGGAACG+AGG | 0.726610 | 4_1:-16997708 | Msa0537930:CDS |
| AAATCTCACCCGAGGCAACG+GGG | 0.746775 | 4_1:-16998804 | Msa0537930:CDS |
| GGGGTTACTAGGTGGCAACG+AGG | 0.750829 | 4_1:-16998334 | Msa0537930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAACATATATATGATAA+TGG | + | chr4_1:16999406-16999425 | None:intergenic | 10.0% |
| !! | ATTTATTAACAACATAATAA+TGG | - | chr4_1:17000133-17000152 | Msa0537930:intron | 10.0% |
| !!! | TAAAAAATTTAAAACTTGAA+TGG | + | chr4_1:17000246-17000265 | None:intergenic | 10.0% |
| !!! | CTTTATTTTATCATTTGTTA+TGG | - | chr4_1:16998354-16998373 | Msa0537930:CDS | 15.0% |
| !!! | ACAAAATTGTTTTAAATTGT+TGG | - | chr4_1:16998559-16998578 | Msa0537930:intron | 15.0% |
| !!! | ATTTTTGTTTTTTCTTTTTC+AGG | - | chr4_1:16998712-16998731 | Msa0537930:intron | 15.0% |
| !!! | ATATGTTTTAATTTATAGAC+AGG | - | chr4_1:16999424-16999443 | Msa0537930:intron | 15.0% |
| !!! | TATGTTTTAATTTATAGACA+GGG | - | chr4_1:16999425-16999444 | Msa0537930:intron | 15.0% |
| !! | AACAAAACATAAATAAATGA+GGG | + | chr4_1:16999601-16999620 | None:intergenic | 15.0% |
| !!! | AATAATGGAAAATCTTTTTA+TGG | - | chr4_1:17000148-17000167 | Msa0537930:intron | 15.0% |
| !!! | AAATTTTTTAACTCTGTATA+TGG | - | chr4_1:17000256-17000275 | Msa0537930:CDS | 15.0% |
| !!! | TCTTTCTTTTTAATATTTAG+TGG | - | chr4_1:17000487-17000506 | Msa0537930:CDS | 15.0% |
| !!! | TTTTTATTAGTAAAAAGTAC+AGG | - | chr4_1:17000577-17000596 | Msa0537930:CDS | 15.0% |
| !! | TTAATTAATCTGAGAATTAA+AGG | + | chr4_1:17000852-17000871 | None:intergenic | 15.0% |
| !! | AACAAAATATAGCATTAAAA+TGG | + | chr4_1:17000935-17000954 | None:intergenic | 15.0% |
| !! | TATAATATTATCTGTTTGTT+AGG | - | chr4_1:17002541-17002560 | Msa0537930:intron | 15.0% |
| !!! | ATAATATTATCTGTTTGTTA+GGG | - | chr4_1:17002542-17002561 | Msa0537930:intron | 15.0% |
| !!! | GATTTGAAATAATGAAAGTA+GGG | + | chr4_1:16996923-16996942 | None:intergenic | 20.0% |
| !! | ATTTAGTTGTTTATTCAAAC+AGG | - | chr4_1:16998436-16998455 | Msa0537930:intron | 20.0% |
| !! | TTTAGTTGTTTATTCAAACA+GGG | - | chr4_1:16998437-16998456 | Msa0537930:intron | 20.0% |
| !! | ACAAAACATAAATAAATGAG+GGG | + | chr4_1:16999600-16999619 | None:intergenic | 20.0% |
| !! | GAACAAAACATAAATAAATG+AGG | + | chr4_1:16999602-16999621 | None:intergenic | 20.0% |
| !!! | CATAAAAACAAGAATCATTT+TGG | - | chr4_1:17000020-17000039 | Msa0537930:intron | 20.0% |
| !! | AATTATTATAGTGTAGTAGT+TGG | - | chr4_1:17000079-17000098 | Msa0537930:intron | 20.0% |
| !! | ATTATTATAGTGTAGTAGTT+GGG | - | chr4_1:17000080-17000099 | Msa0537930:intron | 20.0% |
| !!! | ATTTTATTTTCTACTTGTCT+AGG | - | chr4_1:17000304-17000323 | Msa0537930:CDS | 20.0% |
| !! | ATTGATACCAAATCAATAAT+TGG | + | chr4_1:17000346-17000365 | None:intergenic | 20.0% |
| !! | ATTTCAAAGACCAAAAATAT+TGG | + | chr4_1:17001045-17001064 | None:intergenic | 20.0% |
| !!! | ATTTTTGGTCTTTGAAATAA+TGG | - | chr4_1:17001047-17001066 | Msa0537930:intron | 20.0% |
| !! | TATAATATCAAAGCAAGTTA+GGG | + | chr4_1:17001075-17001094 | None:intergenic | 20.0% |
| !! | ATATAATATCAAAGCAAGTT+AGG | + | chr4_1:17001076-17001095 | None:intergenic | 20.0% |
| !! | GTATATATTTGCAGATAATT+TGG | - | chr4_1:17001161-17001180 | Msa0537930:intron | 20.0% |
| !! | AGACATAATAAAAAAAGCAA+TGG | - | chr4_1:17001216-17001235 | Msa0537930:intron | 20.0% |
| !! | GACATAATAAAAAAAGCAAT+GGG | - | chr4_1:17001217-17001236 | Msa0537930:intron | 20.0% |
| !! | ACATAATAAAAAAAGCAATG+GGG | - | chr4_1:17001218-17001237 | Msa0537930:intron | 20.0% |
| !!! | ATATCAATTTTCTACCATTT+TGG | - | chr4_1:17001489-17001508 | Msa0537930:intron | 20.0% |
| !!! | TTCTATAGGAGTTTTATTAT+TGG | - | chr4_1:17001534-17001553 | Msa0537930:intron | 20.0% |
| !!! | ATCATTCTCCTTTTTTAATT+GGG | + | chr4_1:17002385-17002404 | None:intergenic | 20.0% |
| !! | AAGAAATTTAAATTGCTTTG+CGG | - | chr4_1:17002434-17002453 | Msa0537930:intron | 20.0% |
| !!! | TAATATTATCTGTTTGTTAG+GGG | - | chr4_1:17002543-17002562 | Msa0537930:intron | 20.0% |
| !! | CGATTTGAAATAATGAAAGT+AGG | + | chr4_1:16996924-16996943 | None:intergenic | 25.0% |
| !! | ATTCTGATAGATTTTCTCAT+TGG | + | chr4_1:16996989-16997008 | None:intergenic | 25.0% |
| ! | TCTATCAGAATTTCTTCAAT+CGG | - | chr4_1:16996998-16997017 | Msa0537930:three_prime_UTR | 25.0% |
| !! | AATTTTACATTTAACCCACT+TGG | - | chr4_1:16997206-16997225 | Msa0537930:CDS | 25.0% |
| !! | ATTTTACATTTAACCCACTT+GGG | - | chr4_1:16997207-16997226 | Msa0537930:CDS | 25.0% |
| !!! | AATTTTAGTTGAATGTGTCT+CGG | - | chr4_1:16997352-16997371 | Msa0537930:intron | 25.0% |
| !! | AGATGAAAGTGAAATTGTTT+TGG | - | chr4_1:16997491-16997510 | Msa0537930:CDS | 25.0% |
| !!! | TGAAATTGGTTTTAGATTGT+TGG | - | chr4_1:16997805-16997824 | Msa0537930:CDS | 25.0% |
| ! | TAATTGTAGATTGTAATCAC+CGG | - | chr4_1:16997921-16997940 | Msa0537930:CDS | 25.0% |
| !!! | TTTTTTTTGAAAGAGTCTGA+TGG | - | chr4_1:16998029-16998048 | Msa0537930:intron | 25.0% |
| !!! | TTTGTTTTTTCTTTTTCAGG+CGG | - | chr4_1:16998715-16998734 | Msa0537930:intron | 25.0% |
| ! | TTGGAAAATAACTCGTATTA+CGG | + | chr4_1:16999549-16999568 | None:intergenic | 25.0% |
| ! | CAAAACATAAATAAATGAGG+GGG | + | chr4_1:16999599-16999618 | None:intergenic | 25.0% |
| ! | TAGTGTAAATCTACTATGTT+TGG | + | chr4_1:16999776-16999795 | None:intergenic | 25.0% |
| !!! | GTGTTTTCTTACTTTTGTAT+GGG | - | chr4_1:17000042-17000061 | Msa0537930:intron | 25.0% |
| !! | ATTCATACAGAATCTGATTT+TGG | + | chr4_1:17000115-17000134 | None:intergenic | 25.0% |
| ! | AAAGTTTACATAAACAGACA+AGG | + | chr4_1:17000204-17000223 | None:intergenic | 25.0% |
| !! | TAGTTCTCCAATTATTGATT+TGG | - | chr4_1:17000336-17000355 | Msa0537930:CDS | 25.0% |
| ! | AAAATGTCTTAACTGGATTA+AGG | - | chr4_1:17000375-17000394 | Msa0537930:CDS | 25.0% |
| ! | TTGCAAATAAAATGTGTGTA+TGG | - | chr4_1:17000512-17000531 | Msa0537930:CDS | 25.0% |
| !! | GTTTTTCTTACCCATTTTAT+TGG | - | chr4_1:17000649-17000668 | Msa0537930:CDS | 25.0% |
| ! | ATATCTTGATCTTGCAAATT+TGG | + | chr4_1:17000713-17000732 | None:intergenic | 25.0% |
| ! | TTCTCAGATTAATTAAGCAT+TGG | - | chr4_1:17000856-17000875 | Msa0537930:intron | 25.0% |
| ! | ACTTGAAAATGAAAAGTGAA+CGG | + | chr4_1:17000996-17001015 | None:intergenic | 25.0% |
| !!! | TTTTTTGTTTTATGCGTATC+TGG | - | chr4_1:17001332-17001351 | Msa0537930:intron | 25.0% |
| ! | TGACTGGTATATAAAACTTA+AGG | - | chr4_1:17001355-17001374 | Msa0537930:intron | 25.0% |
| ! | GTATATAAAACTTAAGGAGA+GGG | - | chr4_1:17001361-17001380 | Msa0537930:intron | 25.0% |
| ! | TCATTTATTGAACAAATGAC+TGG | + | chr4_1:17001432-17001451 | None:intergenic | 25.0% |
| ! | TTGAAATAGAAGAACCAAAA+TGG | + | chr4_1:17001506-17001525 | None:intergenic | 25.0% |
| ! | TTTCAATGCTATTCTTCTAT+AGG | - | chr4_1:17001520-17001539 | Msa0537930:intron | 25.0% |
| ! | TATTGAAAATCTGATAGTAG+AGG | - | chr4_1:17001748-17001767 | Msa0537930:intron | 25.0% |
| ! | TTTATTCAGCTCTATATCTT+TGG | - | chr4_1:17002191-17002210 | Msa0537930:intron | 25.0% |
| ! | TTATTCAGCTCTATATCTTT+GGG | - | chr4_1:17002192-17002211 | Msa0537930:intron | 25.0% |
| ! | AAGTAACTTCTTTGATTAAC+AGG | - | chr4_1:17002266-17002285 | Msa0537930:intron | 25.0% |
| ! | TTGATTAACAGGATGATTTA+AGG | - | chr4_1:17002277-17002296 | Msa0537930:intron | 25.0% |
| !!! | CATCATTCTCCTTTTTTAAT+TGG | + | chr4_1:17002386-17002405 | None:intergenic | 25.0% |
| ! | CCATAATATCTCTTTCTATT+CGG | + | chr4_1:17002461-17002480 | None:intergenic | 25.0% |
| ! | TTTATTCAATTGCATCAGTT+TGG | + | chr4_1:17002488-17002507 | None:intergenic | 25.0% |
| !! | TTAATTGATCGTTAAGTTGT+TGG | - | chr4_1:17002675-17002694 | Msa0537930:five_prime_UTR | 25.0% |
| TGAAAGTAGGGAAATGAAAA+CGG | + | chr4_1:16996911-16996930 | None:intergenic | 30.0% | |
| AAAACAAGTAATTGAGAGAG+AGG | + | chr4_1:16997062-16997081 | None:intergenic | 30.0% | |
| TACGTCTATTCAAAATTGAG+CGG | + | chr4_1:16997140-16997159 | None:intergenic | 30.0% | |
| AAATTTCAAAACCACCTAGA+CGG | + | chr4_1:16997191-16997210 | None:intergenic | 30.0% | |
| TCAAACTAACCAACGAAAAT+TGG | + | chr4_1:16997310-16997329 | None:intergenic | 30.0% | |
| !! | ATTAGTGAAGTGTTGAGAAT+TGG | - | chr4_1:16997396-16997415 | Msa0537930:intron | 30.0% |
| CGTAAGTACATCTCAAATTA+TGG | + | chr4_1:16997471-16997490 | None:intergenic | 30.0% | |
| CAATCTACAATTGCAATTGA+AGG | + | chr4_1:16997870-16997889 | None:intergenic | 30.0% | |
| ! | CTCAACATTTAGTTTATCTG+AGG | + | chr4_1:16998059-16998078 | None:intergenic | 30.0% |
| ATAAACTAAATGTTGAGAGC+TGG | - | chr4_1:16998062-16998081 | Msa0537930:intron | 30.0% | |
| TAAACTAAATGTTGAGAGCT+GGG | - | chr4_1:16998063-16998082 | Msa0537930:intron | 30.0% | |
| ACATTTGATATACTTGGACA+CGG | + | chr4_1:16998106-16998125 | None:intergenic | 30.0% | |
| GTTTCGACATTTGATATACT+TGG | + | chr4_1:16998112-16998131 | None:intergenic | 30.0% | |
| TTTGAGAGAACTTATGGAAA+TGG | - | chr4_1:16998204-16998223 | Msa0537930:intron | 30.0% | |
| CTTATAGGCTATAGCTTATA+AGG | - | chr4_1:16998323-16998342 | Msa0537930:CDS | 30.0% | |
| TAAGCGCTTATCATATGTAA+GGG | + | chr4_1:16998397-16998416 | None:intergenic | 30.0% | |
| TAGACTGTAACTTAGAACTA+TGG | - | chr4_1:16998637-16998656 | Msa0537930:intron | 30.0% | |
| GAACTATGGCAAAAGAAAAT+TGG | - | chr4_1:16998651-16998670 | Msa0537930:intron | 30.0% | |
| TCCAAATCATTCTCTTAACA+AGG | - | chr4_1:16998853-16998872 | Msa0537930:CDS | 30.0% | |
| ACCTTGTTAAGAGAATGATT+TGG | + | chr4_1:16998857-16998876 | None:intergenic | 30.0% | |
| TAAACTAAATCCAATTTCCC+CGG | + | chr4_1:16998939-16998958 | None:intergenic | 30.0% | |
| !! | ATTAGACGCTGCTTTAATTT+TGG | - | chr4_1:16998958-16998977 | Msa0537930:intron | 30.0% |
| !! | TTAGACGCTGCTTTAATTTT+GGG | - | chr4_1:16998959-16998978 | Msa0537930:intron | 30.0% |
| ! | ATTGTTTTCTGAATTGGAAG+AGG | - | chr4_1:16999024-16999043 | Msa0537930:intron | 30.0% |
| !! | AGCTTTTTGCTTTTCACAAT+TGG | - | chr4_1:16999145-16999164 | Msa0537930:intron | 30.0% |
| !! | GCTTTTTGCTTTTCACAATT+GGG | - | chr4_1:16999146-16999165 | Msa0537930:intron | 30.0% |
| ! | ACTTTTCTTTCTTCCAATGA+TGG | - | chr4_1:16999169-16999188 | Msa0537930:intron | 30.0% |
| ! | CTTTTCTTTCTTCCAATGAT+GGG | - | chr4_1:16999170-16999189 | Msa0537930:intron | 30.0% |
| ! | TCAAGATACTTGTCTTTTCT+TGG | - | chr4_1:16999202-16999221 | Msa0537930:intron | 30.0% |
| ! | CAAGATACTTGTCTTTTCTT+GGG | - | chr4_1:16999203-16999222 | Msa0537930:intron | 30.0% |
| TTATTGAAGATTTGTGTCAG+TGG | - | chr4_1:16999266-16999285 | Msa0537930:intron | 30.0% | |
| !! | TTTCCCTTATTTAGGTTGTT+TGG | - | chr4_1:16999485-16999504 | Msa0537930:intron | 30.0% |
| ! | ATGTTCTCCTTGAGTTTTTA+AGG | - | chr4_1:16999512-16999531 | Msa0537930:intron | 30.0% |
| ! | TGTTCTCCTTGAGTTTTTAA+GGG | - | chr4_1:16999513-16999532 | Msa0537930:intron | 30.0% |
| ! | CTGAAGATAGTTATCGATTA+GGG | - | chr4_1:16999646-16999665 | Msa0537930:intron | 30.0% |
| TGAAATAAATCTCACCACAT+AGG | - | chr4_1:16999823-16999842 | Msa0537930:intron | 30.0% | |
| !! | GGTGTTTTCTTACTTTTGTA+TGG | - | chr4_1:17000041-17000060 | Msa0537930:intron | 30.0% |
| ! | TATTTTCTACTTGTCTAGGA+AGG | - | chr4_1:17000308-17000327 | Msa0537930:CDS | 30.0% |
| AGTTCACAAAATGTCTTAAC+TGG | - | chr4_1:17000368-17000387 | Msa0537930:CDS | 30.0% | |
| ACTGAAAGATTGAATTGACA+TGG | + | chr4_1:17000455-17000474 | None:intergenic | 30.0% | |
| CATGTCTGTTCCAATAAAAT+GGG | + | chr4_1:17000662-17000681 | None:intergenic | 30.0% | |
| !! | ATGAGCATTTTGATATAGCA+CGG | - | chr4_1:17000687-17000706 | Msa0537930:CDS | 30.0% |
| ! | CTCAATTTTCCATGTTATCA+GGG | + | chr4_1:17000884-17000903 | None:intergenic | 30.0% |
| ! | TCTCAATTTTCCATGTTATC+AGG | + | chr4_1:17000885-17000904 | None:intergenic | 30.0% |
| GGTATATAAAACTTAAGGAG+AGG | - | chr4_1:17001360-17001379 | Msa0537930:intron | 30.0% | |
| ! | AAGATCAGTGCATTTTATGT+TGG | - | chr4_1:17001396-17001415 | Msa0537930:intron | 30.0% |
| ! | CAATTTCACTATTGATTGAG+AGG | - | chr4_1:17001566-17001585 | Msa0537930:intron | 30.0% |
| AGTATCTCTAGTAAGATACA+TGG | - | chr4_1:17001632-17001651 | Msa0537930:intron | 30.0% | |
| AGTTGAAAAACTTGTGATTG+AGG | - | chr4_1:17001826-17001845 | Msa0537930:intron | 30.0% | |
| ATCTATGCTCAAATTTGTGA+AGG | + | chr4_1:17001933-17001952 | None:intergenic | 30.0% | |
| TTAACAGGATGATTTAAGGA+AGG | - | chr4_1:17002281-17002300 | Msa0537930:intron | 30.0% | |
| CTTCAATTTCTTCCATTTGT+TGG | + | chr4_1:17002335-17002354 | None:intergenic | 30.0% | |
| TGTTCGATAAATTCTCTCTA+CGG | + | chr4_1:17002362-17002381 | None:intergenic | 30.0% | |
| ATCGAACACCCAATTAAAAA+AGG | - | chr4_1:17002374-17002393 | Msa0537930:intron | 30.0% | |
| CCGAATAGAAAGAGATATTA+TGG | - | chr4_1:17002458-17002477 | Msa0537930:intron | 30.0% | |
| ! | AAACATGCTATCCTTGATTT+TGG | - | chr4_1:17002505-17002524 | Msa0537930:intron | 30.0% |
| ! | AACATGCTATCCTTGATTTT+GGG | - | chr4_1:17002506-17002525 | Msa0537930:intron | 30.0% |
| ! | TCTTCTTTCATTTTCTTCGC+TGG | - | chr4_1:16996950-16996969 | Msa0537930:three_prime_UTR | 35.0% |
| ! | GATTTTCTCATTGGTGAGTT+AGG | + | chr4_1:16996980-16996999 | None:intergenic | 35.0% |
| !!! | CTTGTTTTGTTTCGTGTTTG+CGG | - | chr4_1:16997074-16997093 | Msa0537930:exon | 35.0% |
| TTGAATAGACGTAGCAGATT+TGG | - | chr4_1:16997147-16997166 | Msa0537930:CDS | 35.0% | |
| GTTGAATGTGTCTAACAATG+TGG | - | chr4_1:16997664-16997683 | Msa0537930:CDS | 35.0% | |
| !! | AATTCTCCACTTTTCAACAC+TGG | + | chr4_1:16997727-16997746 | None:intergenic | 35.0% |
| ! | AGTGTTGAAAAGTGGAGAAT+TGG | - | chr4_1:16997726-16997745 | Msa0537930:CDS | 35.0% |
| TTACGAGACGAAAGTGAAAT+TGG | - | chr4_1:16997791-16997810 | Msa0537930:CDS | 35.0% | |
| AAACTAAATGTTGAGAGCTG+GGG | - | chr4_1:16998064-16998083 | Msa0537930:intron | 35.0% | |
| AGACTGTTTGAGAGAACTTA+TGG | - | chr4_1:16998198-16998217 | Msa0537930:intron | 35.0% | |
| AGCTTGTGAAAACTGCTTAT+AGG | - | chr4_1:16998308-16998327 | Msa0537930:CDS | 35.0% | |
| GTAAGCGCTTATCATATGTA+AGG | + | chr4_1:16998398-16998417 | None:intergenic | 35.0% | |
| GCGCTTACGATATTTATATG+CGG | - | chr4_1:16998410-16998429 | Msa0537930:intron | 35.0% | |
| TAGTGGCATTTAGTATACTG+GGG | + | chr4_1:16998505-16998524 | None:intergenic | 35.0% | |
| GTAGTGGCATTTAGTATACT+GGG | + | chr4_1:16998506-16998525 | None:intergenic | 35.0% | |
| AGTAGTGGCATTTAGTATAC+TGG | + | chr4_1:16998507-16998526 | None:intergenic | 35.0% | |
| GGTTCATATAGTAACAGTAG+TGG | + | chr4_1:16998522-16998541 | None:intergenic | 35.0% | |
| ACTATATGAACCGTACTTAC+AGG | - | chr4_1:16998530-16998549 | Msa0537930:intron | 35.0% | |
| TTGTGTTCTTCCTGTAAGTA+CGG | + | chr4_1:16998543-16998562 | None:intergenic | 35.0% | |
| ! | TAACAAGGTTTTCCTTACTG+AGG | - | chr4_1:16998868-16998887 | Msa0537930:CDS | 35.0% |
| !!! | GAACGACATGTTTTTGAGAT+CGG | - | chr4_1:16998911-16998930 | Msa0537930:intron | 35.0% |
| !! | TAGACGCTGCTTTAATTTTG+GGG | - | chr4_1:16998960-16998979 | Msa0537930:intron | 35.0% |
| ! | GGAGCAATTGTTTTCTGAAT+TGG | - | chr4_1:16999018-16999037 | Msa0537930:intron | 35.0% |
| AAGCAAGGCTTGATTCTATT+GGG | - | chr4_1:16999095-16999114 | Msa0537930:intron | 35.0% | |
| ! | ATGTGAGTGATGATTTTGTG+AGG | - | chr4_1:16999122-16999141 | Msa0537930:intron | 35.0% |
| ! | CTTGTCTTTTCTTGGGAATT+TGG | - | chr4_1:16999210-16999229 | Msa0537930:intron | 35.0% |
| !!! | ATGATGTTTCTGGTTTTGCT+TGG | - | chr4_1:16999233-16999252 | Msa0537930:intron | 35.0% |
| !!! | TGATGTTTCTGGTTTTGCTT+GGG | - | chr4_1:16999234-16999253 | Msa0537930:intron | 35.0% |
| GATAACAATGTGCAGTATGT+TGG | - | chr4_1:16999304-16999323 | Msa0537930:intron | 35.0% | |
| CCACCAAACAACCTAAATAA+GGG | + | chr4_1:16999491-16999510 | None:intergenic | 35.0% | |
| !! | CCTTATTTAGGTTGTTTGGT+GGG | - | chr4_1:16999489-16999508 | Msa0537930:intron | 35.0% |
| AATCCTCCCTTAAAAACTCA+AGG | + | chr4_1:16999522-16999541 | None:intergenic | 35.0% | |
| ATACACCAAACTCATTTGAC+AGG | + | chr4_1:16999575-16999594 | None:intergenic | 35.0% | |
| ! | GCTGAAGATAGTTATCGATT+AGG | - | chr4_1:16999645-16999664 | Msa0537930:intron | 35.0% |
| TATATACTAGCATCCCAACT+AGG | + | chr4_1:16999678-16999697 | None:intergenic | 35.0% | |
| AAGGCATACTATACATAGTC+GGG | + | chr4_1:17000185-17000204 | None:intergenic | 35.0% | |
| CAAGGCATACTATACATAGT+CGG | + | chr4_1:17000186-17000205 | None:intergenic | 35.0% | |
| CCATGTCTGTTCCAATAAAA+TGG | + | chr4_1:17000663-17000682 | None:intergenic | 35.0% | |
| ! | CCATTTTATTGGAACAGACA+TGG | - | chr4_1:17000660-17000679 | Msa0537930:CDS | 35.0% |
| AGAAAAGATGTCTCTCATCA+TGG | - | chr4_1:17000902-17000921 | Msa0537930:intron | 35.0% | |
| ! | GAATCTGCAGCCAATATTTT+TGG | - | chr4_1:17001032-17001051 | Msa0537930:intron | 35.0% |
| GTACTACGATGATAGAAAAG+TGG | - | chr4_1:17001101-17001120 | Msa0537930:intron | 35.0% | |
| ATTTGTAACTCTCCAGAAGT+AGG | + | chr4_1:17001196-17001215 | None:intergenic | 35.0% | |
| AAAAAAGCAATGGGGTTACT+AGG | - | chr4_1:17001226-17001245 | Msa0537930:intron | 35.0% | |
| !! | TTTTGAGAATGAGGTAGTAG+AGG | - | chr4_1:17001670-17001689 | Msa0537930:intron | 35.0% |
| TAGAGAAGAAGAGATGAATG+CGG | - | chr4_1:17001886-17001905 | Msa0537930:intron | 35.0% | |
| CACAAATTTGAGCATAGATG+AGG | - | chr4_1:17001934-17001953 | Msa0537930:intron | 35.0% | |
| AATTTGAGCATAGATGAGGA+AGG | - | chr4_1:17001938-17001957 | Msa0537930:intron | 35.0% | |
| TAGAGAAGAAGAGATGAATG+CGG | - | chr4_1:17001886-17001905 | Msa0537930:intron | 35.0% | |
| GGATATGCTCAAATTTGTGA+AGG | + | chr4_1:17002011-17002030 | None:intergenic | 35.0% | |
| AAGCCCGAAAATCTGATTAT+TGG | - | chr4_1:17002079-17002098 | Msa0537930:intron | 35.0% | |
| AGCCCGAAAATCTGATTATT+GGG | - | chr4_1:17002080-17002099 | Msa0537930:intron | 35.0% | |
| ! | TCCCCAATAATCAGATTTTC+GGG | + | chr4_1:17002085-17002104 | None:intergenic | 35.0% |
| ! | GTCCCCAATAATCAGATTTT+CGG | + | chr4_1:17002086-17002105 | None:intergenic | 35.0% |
| CACACAAAATATGTGCACAA+TGG | - | chr4_1:17002232-17002251 | Msa0537930:intron | 35.0% | |
| GCTGAAAATAAGCCAACAAA+TGG | - | chr4_1:17002320-17002339 | Msa0537930:intron | 35.0% | |
| ATTACCTGGCAAGAATTTCA+TGG | + | chr4_1:17002605-17002624 | None:intergenic | 35.0% | |
| ! | GATGAACAGTTCTAATTACC+TGG | + | chr4_1:17002619-17002638 | None:intergenic | 35.0% |
| TGAGTGAGCTTAAACACTAG+TGG | + | chr4_1:16996882-16996901 | None:intergenic | 40.0% | |
| ! | CGTAGCAGATTTGGTAAAAG+CGG | - | chr4_1:16997156-16997175 | Msa0537930:CDS | 40.0% |
| TACATTTAACCCACTTGGGT+TGG | - | chr4_1:16997211-16997230 | Msa0537930:CDS | 40.0% | |
| ACATTTAACCCACTTGGGTT+GGG | - | chr4_1:16997212-16997231 | Msa0537930:CDS | 40.0% | |
| ! | CTTTGGTGTATACTCTTCTC+AGG | - | chr4_1:16997260-16997279 | Msa0537930:CDS | 40.0% |
| TAACCAACGAAAATTGGCAC+TGG | + | chr4_1:16997304-16997323 | None:intergenic | 40.0% | |
| !! | GCTATGAGGTTGATGAGATT+TGG | - | chr4_1:16997616-16997635 | Msa0537930:CDS | 40.0% |
| ! | ACAAAGCCAGTGTTGAAAAG+TGG | - | chr4_1:16997718-16997737 | Msa0537930:CDS | 40.0% |
| AGACATGCTAAGGATCTGTT+TGG | - | chr4_1:16998134-16998153 | Msa0537930:intron | 40.0% | |
| AGCCTGTGAAAACAGCTTAT+AGG | - | chr4_1:16998281-16998300 | Msa0537930:intron | 40.0% | |
| !! | AGCCTATAAGCTGTTTTCAC+AGG | + | chr4_1:16998286-16998305 | None:intergenic | 40.0% |
| TTCTCCCACTCTCAACATTT+AGG | + | chr4_1:16998463-16998482 | None:intergenic | 40.0% | |
| GAAGCGCGTTCAAAGTTTAA+CGG | - | chr4_1:16998778-16998797 | Msa0537930:CDS | 40.0% | |
| !! | AAGATCTGCTATTTCGCGAA+CGG | - | chr4_1:16998808-16998827 | Msa0537930:CDS | 40.0% |
| ! | GGTTTTCCTTACTGAGGTAA+TGG | - | chr4_1:16998874-16998893 | Msa0537930:CDS | 40.0% |
| ! | TTTCCTTACTGAGGTAATGG+AGG | - | chr4_1:16998877-16998896 | Msa0537930:CDS | 40.0% |
| !!! | CATGTTTTTGAGATCGGTTC+CGG | - | chr4_1:16998917-16998936 | Msa0537930:intron | 40.0% |
| !!! | ATGTTTTTGAGATCGGTTCC+GGG | - | chr4_1:16998918-16998937 | Msa0537930:intron | 40.0% |
| !! | AATTTTGGGGATTCCAGTTG+TGG | - | chr4_1:16998973-16998992 | Msa0537930:intron | 40.0% |
| !! | ATTTTGGGGATTCCAGTTGT+GGG | - | chr4_1:16998974-16998993 | Msa0537930:intron | 40.0% |
| TCTGAATTGGAAGAGGAGTA+TGG | - | chr4_1:16999031-16999050 | Msa0537930:intron | 40.0% | |
| CTATGACTACTCTTGAAGCA+AGG | - | chr4_1:16999080-16999099 | Msa0537930:intron | 40.0% | |
| GAAGCAAGGCTTGATTCTAT+TGG | - | chr4_1:16999094-16999113 | Msa0537930:intron | 40.0% | |
| AGCAAGGCTTGATTCTATTG+GGG | - | chr4_1:16999096-16999115 | Msa0537930:intron | 40.0% | |
| ! | TTCTTCCAATGATGGGAAAG+TGG | - | chr4_1:16999177-16999196 | Msa0537930:intron | 40.0% |
| TGAATCCACTTTCCCATCAT+TGG | + | chr4_1:16999185-16999204 | None:intergenic | 40.0% | |
| GGGAATTTGGATGATGTTTC+TGG | - | chr4_1:16999223-16999242 | Msa0537930:intron | 40.0% | |
| !!! | GATGTTTCTGGTTTTGCTTG+GGG | - | chr4_1:16999235-16999254 | Msa0537930:intron | 40.0% |
| AACAATGTGCAGTATGTTGG+TGG | - | chr4_1:16999307-16999326 | Msa0537930:intron | 40.0% | |
| GCCAAAAAGCTTTCCAATCA+CGG | - | chr4_1:16999460-16999479 | Msa0537930:intron | 40.0% | |
| CCAAAAAGCTTTCCAATCAC+GGG | - | chr4_1:16999461-16999480 | Msa0537930:intron | 40.0% | |
| AATAAGGGAAATCCCGTGAT+TGG | + | chr4_1:16999476-16999495 | None:intergenic | 40.0% | |
| ! | TCACGGGATTTCCCTTATTT+AGG | - | chr4_1:16999477-16999496 | Msa0537930:intron | 40.0% |
| !! | CCCTTATTTAGGTTGTTTGG+TGG | - | chr4_1:16999488-16999507 | Msa0537930:intron | 40.0% |
| CCCACCAAACAACCTAAATA+AGG | + | chr4_1:16999492-16999511 | None:intergenic | 40.0% | |
| !! | TCTCCTTGAGTTTTTAAGGG+AGG | - | chr4_1:16999516-16999535 | Msa0537930:intron | 40.0% |
| AAACTCATTTGACAGGAGCT+TGG | + | chr4_1:16999568-16999587 | None:intergenic | 40.0% | |
| AAGCTCCTGTCAAATGAGTT+TGG | - | chr4_1:16999567-16999586 | Msa0537930:intron | 40.0% | |
| TTGGGATGCTAGTATATAGC+TGG | - | chr4_1:16999680-16999699 | Msa0537930:intron | 40.0% | |
| TCACCACATAGGTGTTTGTT+GGG | - | chr4_1:16999834-16999853 | Msa0537930:intron | 40.0% | |
| TATCCCAACAAACACCTATG+TGG | + | chr4_1:16999840-16999859 | None:intergenic | 40.0% | |
| CATTCAATCACTTCTCACTG+TGG | + | chr4_1:16999891-16999910 | None:intergenic | 40.0% | |
| ATCATAGTAAATCTCACCCG+AGG | - | chr4_1:17000759-17000778 | Msa0537930:CDS | 40.0% | |
| TAAGGATCTACATGACGATC+AGG | - | chr4_1:17000802-17000821 | Msa0537930:CDS | 40.0% | |
| TACATGACGATCAGGTAACT+TGG | - | chr4_1:17000810-17000829 | Msa0537930:CDS | 40.0% | |
| ACATGACGATCAGGTAACTT+GGG | - | chr4_1:17000811-17000830 | Msa0537930:CDS | 40.0% | |
| ! | TTTTATGCGTATCTGGTGAC+TGG | - | chr4_1:17001339-17001358 | Msa0537930:intron | 40.0% |
| TAAGATACATGGAGAAGACG+AGG | - | chr4_1:17001643-17001662 | Msa0537930:intron | 40.0% | |
| AAGATACATGGAGAAGACGA+GGG | - | chr4_1:17001644-17001663 | Msa0537930:intron | 40.0% | |
| TTCACCATCAATGCTCGAAT+TGG | + | chr4_1:17001783-17001802 | None:intergenic | 40.0% | |
| AGAGAAGAAGAGATGAATGC+GGG | - | chr4_1:17001887-17001906 | Msa0537930:intron | 40.0% | |
| AGAGAAGAAGAGATGAATGC+GGG | - | chr4_1:17001887-17001906 | Msa0537930:intron | 40.0% | |
| GAATGCGGGAAATCTCATAA+CGG | - | chr4_1:17001979-17001998 | Msa0537930:intron | 40.0% | |
| CACAAATTTGAGCATATCCG+AGG | - | chr4_1:17002012-17002031 | Msa0537930:intron | 40.0% | |
| AATTTGAGCATATCCGAGGA+AGG | - | chr4_1:17002016-17002035 | Msa0537930:intron | 40.0% | |
| GCCCGAAAATCTGATTATTG+GGG | - | chr4_1:17002081-17002100 | Msa0537930:intron | 40.0% | |
| CTGATTATTGGGGACAAAGT+AGG | - | chr4_1:17002091-17002110 | Msa0537930:intron | 40.0% | |
| ATAGTCAGAGCTGAATGTAG+GGG | + | chr4_1:17002164-17002183 | None:intergenic | 40.0% | |
| CATAGTCAGAGCTGAATGTA+GGG | + | chr4_1:17002165-17002184 | None:intergenic | 40.0% | |
| ACATAGTCAGAGCTGAATGT+AGG | + | chr4_1:17002166-17002185 | None:intergenic | 40.0% | |
| ! | TGATGAGTTGAAGAAAGAGC+TGG | - | chr4_1:17002401-17002420 | Msa0537930:intron | 40.0% |
| ! | TGTTTGTTAGGGGTTGTGTT+AGG | - | chr4_1:17002553-17002572 | Msa0537930:CDS | 40.0% |
| GAAACCATGAAATTCTTGCC+AGG | - | chr4_1:17002598-17002617 | Msa0537930:exon | 40.0% | |
| ! | AGAGAGGAAGAGAGAAGTAC+CGG | + | chr4_1:16997046-16997065 | None:intergenic | 45.0% |
| ! | AGCAGATTTGGTAAAAGCGG+CGG | - | chr4_1:16997159-16997178 | Msa0537930:CDS | 45.0% |
| ! | TTGGTCTGGTGGTGTTAGTT+TGG | - | chr4_1:16997235-16997254 | Msa0537930:CDS | 45.0% |
| ! | TGGTCTGGTGGTGTTAGTTT+GGG | - | chr4_1:16997236-16997255 | Msa0537930:CDS | 45.0% |
| ! | GTGGTGTTAGTTTGGGACTT+TGG | - | chr4_1:16997243-16997262 | Msa0537930:CDS | 45.0% |
| GTATACTCTTCTCAGGTCTC+AGG | - | chr4_1:16997267-16997286 | Msa0537930:CDS | 45.0% | |
| ! | ACTCCAGTGCCAATTTTCGT+TGG | - | chr4_1:16997298-16997317 | Msa0537930:intron | 45.0% |
| AACTGTAGAGTTGCGCTATG+AGG | - | chr4_1:16997602-16997621 | Msa0537930:CDS | 45.0% | |
| GTCTTTGCTGCTATCATCTG+AGG | - | chr4_1:16997763-16997782 | Msa0537930:CDS | 45.0% | |
| ACCTCATAACGCAACTCTAC+CGG | + | chr4_1:16997943-16997962 | None:intergenic | 45.0% | |
| GTCGAAACTCAGACATGCTA+AGG | - | chr4_1:16998124-16998143 | Msa0537930:intron | 45.0% | |
| AGGGCCTAAATGTTGAGAGT+GGG | - | chr4_1:16998456-16998475 | Msa0537930:intron | 45.0% | |
| !! | AGATCTGCTATTTCGCGAAC+GGG | - | chr4_1:16998809-16998828 | Msa0537930:CDS | 45.0% |
| AAGCCTCCATTACCTCAGTA+AGG | + | chr4_1:16998883-16998902 | None:intergenic | 45.0% | |
| !! | TTACTGAGGTAATGGAGGCT+TGG | - | chr4_1:16998882-16998901 | Msa0537930:CDS | 45.0% |
| !!! | TGTTTTTGAGATCGGTTCCG+GGG | - | chr4_1:16998919-16998938 | Msa0537930:intron | 45.0% |
| !! | TTTTGGGGATTCCAGTTGTG+GGG | - | chr4_1:16998975-16998994 | Msa0537930:intron | 45.0% |
| TGCTTCACATGCGAAGAGAA+AGG | - | chr4_1:16999054-16999073 | Msa0537930:intron | 45.0% | |
| TGTGTCAGTGGCTTGATAAG+AGG | - | chr4_1:16999278-16999297 | Msa0537930:intron | 45.0% | |
| ! | CCCGTGATTGGAAAGCTTTT+TGG | + | chr4_1:16999464-16999483 | None:intergenic | 45.0% |
| ! | ATTAGGGTGCCAACCTAGTT+GGG | - | chr4_1:16999662-16999681 | Msa0537930:intron | 45.0% |
| TACTAGCATCCCAACTAGGT+TGG | + | chr4_1:16999674-16999693 | None:intergenic | 45.0% | |
| CTCACCACATAGGTGTTTGT+TGG | - | chr4_1:16999833-16999852 | Msa0537930:intron | 45.0% | |
| ! | ACGGGGTACTTCAAGGTTTA+AGG | - | chr4_1:17000784-17000803 | Msa0537930:CDS | 45.0% |
| GTAACTCTCCAGAAGTAGGT+TGG | + | chr4_1:17001192-17001211 | None:intergenic | 45.0% | |
| AAAGCAATGGGGTTACTAGG+TGG | - | chr4_1:17001229-17001248 | Msa0537930:intron | 45.0% | |
| TAGGTGGCAACGAGGATAAA+AGG | - | chr4_1:17001245-17001264 | Msa0537930:intron | 45.0% | |
| AGGTGGCAACGAGGATAAAA+GGG | - | chr4_1:17001246-17001265 | Msa0537930:intron | 45.0% | |
| ATTGAGAGGTTGACATGAGC+AGG | - | chr4_1:17001580-17001599 | Msa0537930:intron | 45.0% | |
| ACATGAGCAGGTTTCAGATG+TGG | - | chr4_1:17001592-17001611 | Msa0537930:intron | 45.0% | |
| !!! | CGAGGGAAGTTTTGAGAATG+AGG | - | chr4_1:17001661-17001680 | Msa0537930:intron | 45.0% |
| TCACAAGTGCTCAACCTTGT+GGG | + | chr4_1:17001701-17001720 | None:intergenic | 45.0% | |
| ATCACAAGTGCTCAACCTTG+TGG | + | chr4_1:17001702-17001721 | None:intergenic | 45.0% | |
| ATCAATGCTCGAATTGGAGG+GGG | + | chr4_1:17001777-17001796 | None:intergenic | 45.0% | |
| CATCAATGCTCGAATTGGAG+GGG | + | chr4_1:17001778-17001797 | None:intergenic | 45.0% | |
| CCATCAATGCTCGAATTGGA+GGG | + | chr4_1:17001779-17001798 | None:intergenic | 45.0% | |
| ACCATCAATGCTCGAATTGG+AGG | + | chr4_1:17001780-17001799 | None:intergenic | 45.0% | |
| !! | TCGAGCATTGATGGTGAAGT+AGG | - | chr4_1:17001785-17001804 | Msa0537930:intron | 45.0% |
| TTGAGCATAGACAAGGAACG+AGG | - | chr4_1:17001863-17001882 | Msa0537930:intron | 45.0% | |
| GAATGCGGGCAATCTCATAA+CGG | - | chr4_1:17001901-17001920 | Msa0537930:intron | 45.0% | |
| TTGAGCATAGATGAGGAAGG+AGG | - | chr4_1:17001941-17001960 | Msa0537930:intron | 45.0% | |
| TTCTTCTCTACCTCCTTCCT+CGG | + | chr4_1:17001954-17001973 | None:intergenic | 45.0% | |
| AGGAAGGAGGTAGAGAAGAA+GGG | - | chr4_1:17001954-17001973 | Msa0537930:intron | 45.0% | |
| TAGTCAGAGCTGAATGTAGG+GGG | + | chr4_1:17002163-17002182 | None:intergenic | 45.0% | |
| TTAGGGGTTGTGTTAGGACT+AGG | - | chr4_1:17002559-17002578 | Msa0537930:CDS | 45.0% | |
| TCAAAACCACCTAGACGGTG+AGG | + | chr4_1:16997186-16997205 | None:intergenic | 50.0% | |
| !! | TTAACCCACTTGGGTTGGGT+TGG | - | chr4_1:16997216-16997235 | Msa0537930:CDS | 50.0% |
| ACCGGTAGAGTTGCGTTATG+AGG | - | chr4_1:16997939-16997958 | Msa0537930:CDS | 50.0% | |
| CAGGGCCTAAATGTTGAGAG+TGG | - | chr4_1:16998455-16998474 | Msa0537930:intron | 50.0% | |
| CATTTAGTATACTGGGGCGC+AGG | + | chr4_1:16998499-16998518 | None:intergenic | 50.0% | |
| ! | GCTATTTCGCGAACGGGATT+CGG | - | chr4_1:16998815-16998834 | Msa0537930:CDS | 50.0% |
| ! | GATTAGGGTGCCAACCTAGT+TGG | - | chr4_1:16999661-16999680 | Msa0537930:intron | 50.0% |
| ! | CTTTCCTCGTGTGTGTCGAT+GGG | - | chr4_1:17000736-17000755 | Msa0537930:CDS | 50.0% |
| GTAAATCTCACCCGAGGCAA+CGG | - | chr4_1:17000765-17000784 | Msa0537930:CDS | 50.0% | |
| TAAATCTCACCCGAGGCAAC+GGG | - | chr4_1:17000766-17000785 | Msa0537930:CDS | 50.0% | |
| !! | GCATTGGCTCCCTGATAACA+TGG | - | chr4_1:17000872-17000891 | Msa0537930:intron | 50.0% |
| TGGAAGCTCCAACCTACTTC+TGG | - | chr4_1:17001181-17001200 | Msa0537930:intron | 50.0% | |
| TAGTAGAGGACACTCCCACA+AGG | - | chr4_1:17001684-17001703 | Msa0537930:intron | 50.0% | |
| !! | CCCTCCAATTCGAGCATTGA+TGG | - | chr4_1:17001776-17001795 | Msa0537930:intron | 50.0% |
| TGCGGGAAATCTCATAACGG+AGG | - | chr4_1:17001982-17002001 | Msa0537930:intron | 50.0% | |
| TTGAGCATATCCGAGGAAGG+AGG | - | chr4_1:17002019-17002038 | Msa0537930:intron | 50.0% | |
| GAGGAAGGAGGTAGAGAAGA+AGG | - | chr4_1:17001953-17001972 | Msa0537930:intron | 50.0% | |
| AGTAGGAAGAGAGCCAGAGT+TGG | - | chr4_1:17002108-17002127 | Msa0537930:intron | 50.0% | |
| AGCGTTTCAGCAACCAACTC+TGG | + | chr4_1:17002124-17002143 | None:intergenic | 50.0% | |
| CAGTCAGCTGCCCAAAATCA+AGG | + | chr4_1:17002519-17002538 | None:intergenic | 50.0% | |
| TACCGGCGGTTCTGTAGCTT+GGG | + | chr4_1:16997029-16997048 | None:intergenic | 55.0% | |
| !! | GAGGAAGAGAGAAGTACCGG+CGG | + | chr4_1:16997043-16997062 | None:intergenic | 55.0% |
| CAGACCAACCCAACCCAAGT+GGG | + | chr4_1:16997223-16997242 | None:intergenic | 55.0% | |
| GTTGAGAGCTGGGGAATTGC+AGG | - | chr4_1:16998073-16998092 | Msa0537930:intron | 55.0% | |
| ! | GAGATCGGTTCCGGGGAAAT+TGG | - | chr4_1:16998926-16998945 | Msa0537930:intron | 55.0% |
| CCATCGACACACACGAGGAA+AGG | + | chr4_1:17000738-17000757 | None:intergenic | 55.0% | |
| CCTTTCCTCGTGTGTGTCGA+TGG | - | chr4_1:17000735-17000754 | Msa0537930:CDS | 55.0% | |
| TGATCCCATCGACACACACG+AGG | + | chr4_1:17000743-17000762 | None:intergenic | 55.0% | |
| AAATCTCACCCGAGGCAACG+GGG | - | chr4_1:17000767-17000786 | Msa0537930:CDS | 55.0% | |
| ! | TTGAAGTACCCCGTTGCCTC+GGG | + | chr4_1:17000778-17000797 | None:intergenic | 55.0% |
| ! | CTTGAAGTACCCCGTTGCCT+CGG | + | chr4_1:17000779-17000798 | None:intergenic | 55.0% |
| GGTTGCTGAAACGCTCATCG+TGG | - | chr4_1:17002129-17002148 | Msa0537930:intron | 55.0% | |
| GGGGTTGTGTTAGGACTAGG+AGG | - | chr4_1:17002562-17002581 | Msa0537930:CDS | 55.0% | |
| ! | GTACCGGCGGTTCTGTAGCT+TGG | + | chr4_1:16997030-16997049 | None:intergenic | 60.0% |
| CCAGACCAACCCAACCCAAG+TGG | + | chr4_1:16997224-16997243 | None:intergenic | 60.0% | |
| !! | CCACTTGGGTTGGGTTGGTC+TGG | - | chr4_1:16997221-16997240 | Msa0537930:CDS | 60.0% |
| !! | CTTGGGTTGGGTTGGTCTGG+TGG | - | chr4_1:16997224-16997243 | Msa0537930:CDS | 60.0% |
| ! | CGAGGCAACGGGGTACTTCA+AGG | - | chr4_1:17000777-17000796 | Msa0537930:CDS | 60.0% |
| GGGGTTACTAGGTGGCAACG+AGG | - | chr4_1:17001237-17001256 | Msa0537930:intron | 60.0% | |
| CGCCCAAGCTACAGAACCGC+CGG | - | chr4_1:16997024-16997043 | Msa0537930:three_prime_UTR | 65.0% | |
| !! | TCCAGTTGTGGGGCACCGTG+TGG | - | chr4_1:16998985-16999004 | Msa0537930:intron | 65.0% |
| TCCACACGGTGCCCCACAAC+TGG | + | chr4_1:16998989-16999008 | None:intergenic | 65.0% | |
| AGCGGCGGTCCTCACCGTCT+AGG | - | chr4_1:16997174-16997193 | Msa0537930:CDS | 70.0% | |
| GGCGGTCCTCACCGTCTAGG+TGG | - | chr4_1:16997177-16997196 | Msa0537930:CDS | 70.0% | |
| !! | TGTGGGGCACCGTGTGGAGC+TGG | - | chr4_1:16998991-16999010 | Msa0537930:intron | 70.0% |
| GCTCCTCCGCCAGCTCCACA+CGG | + | chr4_1:16999003-16999022 | None:intergenic | 70.0% | |
| !! | GGGGCACCGTGTGGAGCTGG+CGG | - | chr4_1:16998994-16999013 | Msa0537930:intron | 75.0% |
| GCACCGTGTGGAGCTGGCGG+AGG | - | chr4_1:16998997-16999016 | Msa0537930:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 16996863 | 17002730 | 16996863 | ID=Msa0537930;Name=Msa0537930 |
| chr4_1 | mRNA | 16996863 | 17002730 | 16996863 | ID=Msa0537930-mRNA-1;Parent=Msa0537930;Name=Msa0537930-mRNA-1;_AED=0.00;_eAED=0.00;_QI=126|1|0.83|1|1|1|6|224|581 |
| chr4_1 | exon | 16996863 | 16997305 | 16996863 | ID=Msa0537930-mRNA-1:exon:5029;Parent=Msa0537930-mRNA-1 |
| chr4_1 | exon | 16997410 | 16997991 | 16997410 | ID=Msa0537930-mRNA-1:exon:5028;Parent=Msa0537930-mRNA-1 |
| chr4_1 | exon | 16998293 | 16998418 | 16998293 | ID=Msa0537930-mRNA-1:exon:5027;Parent=Msa0537930-mRNA-1 |
| chr4_1 | exon | 16998770 | 16998916 | 16998770 | ID=Msa0537930-mRNA-1:exon:5026;Parent=Msa0537930-mRNA-1 |
| chr4_1 | exon | 17000245 | 17000859 | 17000245 | ID=Msa0537930-mRNA-1:exon:5025;Parent=Msa0537930-mRNA-1 |
| chr4_1 | exon | 17002548 | 17002730 | 17002548 | ID=Msa0537930-mRNA-1:exon:5024;Parent=Msa0537930-mRNA-1 |
| chr4_1 | five_prime_UTR | 17002605 | 17002730 | 17002605 | ID=Msa0537930-mRNA-1:five_prime_utr;Parent=Msa0537930-mRNA-1 |
| chr4_1 | CDS | 17002548 | 17002604 | 17002548 | ID=Msa0537930-mRNA-1:cds;Parent=Msa0537930-mRNA-1 |
| chr4_1 | CDS | 17000245 | 17000859 | 17000245 | ID=Msa0537930-mRNA-1:cds;Parent=Msa0537930-mRNA-1 |
| chr4_1 | CDS | 16998770 | 16998916 | 16998770 | ID=Msa0537930-mRNA-1:cds;Parent=Msa0537930-mRNA-1 |
| chr4_1 | CDS | 16998293 | 16998418 | 16998293 | ID=Msa0537930-mRNA-1:cds;Parent=Msa0537930-mRNA-1 |
| chr4_1 | CDS | 16997410 | 16997991 | 16997410 | ID=Msa0537930-mRNA-1:cds;Parent=Msa0537930-mRNA-1 |
| chr4_1 | CDS | 16997087 | 16997305 | 16997087 | ID=Msa0537930-mRNA-1:cds;Parent=Msa0537930-mRNA-1 |
| chr4_1 | three_prime_UTR | 16996863 | 16997086 | 16996863 | ID=Msa0537930-mRNA-1:three_prime_utr;Parent=Msa0537930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
