Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0594080 | XP_024637107.1 | 95.525 | 581 | 26 | 0 | 1 | 581 | 1 | 581 | 0.0 | 1130 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0594080 | sp|Q9SK32|MAIL1_ARATH | 30.859 | 256 | 156 | 8 | 40 | 276 | 47 | 300 | 3.50e-25 | 112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0537930 | Msa0594080 | 0.904230 | 1.524514e-79 | -8.615850e-47 |
| Msa0594080 | Msa0641240 | 0.909630 | 4.606723e-82 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0594080 | MtrunA17_Chr4g0012881 | 95.525 | 581 | 26 | 0 | 1 | 581 | 1 | 581 | 0.0 | 1130 |
| Msa0594080 | MtrunA17_Chr3g0097251 | 28.205 | 234 | 154 | 4 | 39 | 258 | 54 | 287 | 9.94e-23 | 102 |
| Msa0594080 | MtrunA17_Chr6g0451401 | 25.092 | 271 | 160 | 8 | 47 | 277 | 70 | 337 | 2.16e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0594080 | AT2G25010.1 | 30.859 | 256 | 156 | 8 | 40 | 276 | 47 | 300 | 3.56e-26 | 112 |
| Msa0594080 | AT2G04865.2 | 31.330 | 233 | 146 | 5 | 40 | 258 | 49 | 281 | 2.97e-25 | 110 |
| Msa0594080 | AT2G04865.1 | 31.330 | 233 | 146 | 5 | 40 | 258 | 49 | 281 | 2.97e-25 | 110 |
| Msa0594080 | AT1G48120.1 | 26.667 | 255 | 156 | 8 | 64 | 289 | 80 | 332 | 7.17e-18 | 88.6 |
Find 125 sgRNAs with CRISPR-Local
Find 342 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACATGCTATCCTTGATTT+TGG | 0.077076 | 4_2:+21135444 | Msa0594080:exon |
| ATTAGACGCTGCTTTAATTT+TGG | 0.103482 | 4_2:+21131889 | Msa0594080:CDS |
| ATATCTTGATCTTGCAAATT+TGG | 0.144782 | 4_2:-21133649 | None:intergenic |
| GGGAATTTGGATGATGTTTC+TGG | 0.151625 | 4_2:+21132154 | Msa0594080:CDS |
| TATAATATTATCTGTTTGTT+AGG | 0.192368 | 4_2:+21135480 | Msa0594080:three_prime_UTR |
| ACGGGGTACTTCAAGGTTTA+AGG | 0.204094 | 4_2:+21133723 | Msa0594080:CDS |
| TTGATTAACAGGATGATTTA+AGG | 0.204191 | 4_2:+21135216 | Msa0594080:intron |
| GTATATATTTGCAGATAATT+TGG | 0.214541 | 4_2:+21134100 | Msa0594080:intron |
| AAGCCCGAAAATCTGATTAT+TGG | 0.271274 | 4_2:+21135018 | Msa0594080:CDS |
| GAGATCGGTTCCGGGGAAAT+TGG | 0.275217 | 4_2:+21131857 | Msa0594080:CDS |
| AAGCAAGGCTTGATTCTATT+GGG | 0.294387 | 4_2:+21132026 | Msa0594080:CDS |
| CTTCAATTTCTTCCATTTGT+TGG | 0.318421 | 4_2:-21135271 | None:intergenic |
| CCGAATAGAAAGAGATATTA+TGG | 0.319624 | 4_2:+21135397 | Msa0594080:CDS |
| AGCCCGAAAATCTGATTATT+GGG | 0.322283 | 4_2:+21135019 | Msa0594080:CDS |
| TGAATCCACTTTCCCATCAT+TGG | 0.324060 | 4_2:-21132113 | None:intergenic |
| TGGAAGCTCCAACCTACTTC+TGG | 0.333647 | 4_2:+21134120 | Msa0594080:CDS |
| TAGGTGGCAACGAGGATAAA+AGG | 0.334124 | 4_2:+21134184 | Msa0594080:CDS |
| GAAGCAAGGCTTGATTCTAT+TGG | 0.348379 | 4_2:+21132025 | Msa0594080:CDS |
| CCATAATATCTCTTTCTATT+CGG | 0.354580 | 4_2:-21135397 | None:intergenic |
| TGTTTGTTAGGGGTTGTGTT+AGG | 0.363724 | 4_2:+21135492 | Msa0594080:three_prime_UTR |
| CCCTCCAATTCGAGCATTGA+TGG | 0.372854 | 4_2:+21134715 | Msa0594080:CDS |
| GCTATTTCGCGAACAGGATT+CGG | 0.378939 | 4_2:+21131746 | Msa0594080:CDS |
| TTCACCATCAATGCTCGAAT+TGG | 0.379321 | 4_2:-21134719 | None:intergenic |
| TTTATTCAATTGCATCAGTT+TGG | 0.382994 | 4_2:-21135424 | None:intergenic |
| TAAATCTCACCCGAGGCAAC+GGG | 0.387949 | 4_2:+21133705 | Msa0594080:CDS |
| ATAATATTATCTGTTTGTTA+GGG | 0.388782 | 4_2:+21135481 | Msa0594080:three_prime_UTR |
| TGTGGGGCACCGTGTGGAGC+TGG | 0.397933 | 4_2:+21131922 | Msa0594080:CDS |
| TCTGAATTGGAAGAGGAGTA+TGG | 0.398288 | 4_2:+21131962 | Msa0594080:CDS |
| TCCACACGGTGCCCCACAAC+TGG | 0.403268 | 4_2:-21131917 | None:intergenic |
| AAGAAATTTAAATTGCTTTG+CGG | 0.403574 | 4_2:+21135373 | Msa0594080:CDS |
| AGATCTGCTATTTCGCGAAC+AGG | 0.405402 | 4_2:+21131740 | Msa0594080:CDS |
| GTACCGGCGGTTCTGTAGCT+TGG | 0.423668 | 4_2:-21130109 | None:intergenic |
| CGATTTGAAATAATGAAAGT+AGG | 0.442754 | 4_2:-21130003 | None:intergenic |
| TACCGGCGGTTCTGTAGCTT+GGG | 0.446327 | 4_2:-21130108 | None:intergenic |
| GCACCGTGTGGAGCTGGCGG+AGG | 0.448066 | 4_2:+21131928 | Msa0594080:CDS |
| GCTGAAAATAAGCCAACAAA+TGG | 0.448086 | 4_2:+21135259 | Msa0594080:CDS |
| ACCTTGTTAAGAGAATGATT+TGG | 0.455071 | 4_2:-21131785 | None:intergenic |
| CGAGGCAACGGGGTACTTCA+AGG | 0.456523 | 4_2:+21133716 | Msa0594080:CDS |
| CCTTTCCTCGTGTGTGTCGA+TGG | 0.466858 | 4_2:+21133674 | Msa0594080:CDS |
| CATAGTCAGAGCTGAATGTA+GGG | 0.468065 | 4_2:-21135101 | None:intergenic |
| GAGGAAGGAGGTAGAGAAGA+AGG | 0.469014 | 4_2:+21134970 | Msa0594080:CDS |
| ACCATCAATGCTCGAATTGG+AGG | 0.477384 | 4_2:-21134716 | None:intergenic |
| AGAGAAGAAGAGATGAATGC+GGG | 0.477553 | 4_2:+21134904 | Msa0594080:CDS |
| TGAAAGTAGGGAAATGAAAA+CGG | 0.479072 | 4_2:-21129990 | None:intergenic |
| TTGAAGTACCCCGTTGCCTC+GGG | 0.479550 | 4_2:-21133714 | None:intergenic |
| GAAGCGCGTTCAAAGTTTAA+CGG | 0.481367 | 4_2:+21131709 | Msa0594080:CDS |
| TTCTTCCAATGATGGGAAAG+TGG | 0.482670 | 4_2:+21132108 | Msa0594080:CDS |
| CTTGAAGTACCCCGTTGCCT+CGG | 0.482898 | 4_2:-21133715 | None:intergenic |
| TTCTTCTCTACCTCCTTCCT+CGG | 0.486598 | 4_2:-21134968 | None:intergenic |
| GATTTGAAATAATGAAAGTA+GGG | 0.490533 | 4_2:-21130002 | None:intergenic |
| TAAGGATCTACATGACGATC+AGG | 0.492858 | 4_2:+21133741 | Msa0594080:CDS |
| ATTTGTAACTCTCCAGAAGT+AGG | 0.494468 | 4_2:-21134132 | None:intergenic |
| TTACTGAGGTAATGGAGGCT+TGG | 0.496261 | 4_2:+21131813 | Msa0594080:CDS |
| AGCGTTTCAGCAACCAACTC+TGG | 0.497300 | 4_2:-21135060 | None:intergenic |
| TCGAGCATTGATGGTGAAGT+AGG | 0.502854 | 4_2:+21134724 | Msa0594080:CDS |
| CTGATTATTGGGGACAAAGT+AGG | 0.505014 | 4_2:+21135030 | Msa0594080:CDS |
| GTAACTCTCCAGAAGTAGGT+TGG | 0.512066 | 4_2:-21134128 | None:intergenic |
| TGTGTCAGTGGCTTGATAAG+AGG | 0.514005 | 4_2:+21132209 | Msa0594080:CDS |
| TCCATCAGAATTTCTTCCAT+CGG | 0.515308 | 4_2:+21130080 | Msa0594080:CDS |
| CAGTCAGCTGCCCAAAATCA+AGG | 0.516730 | 4_2:-21135455 | None:intergenic |
| ACATAGTCAGAGCTGAATGT+AGG | 0.517491 | 4_2:-21135102 | None:intergenic |
| GTAAATCTCACCCGAGGCAA+CGG | 0.518963 | 4_2:+21133704 | Msa0594080:CDS |
| TTAACAGGATGATTTAAGGA+AGG | 0.522322 | 4_2:+21135220 | Msa0594080:intron |
| TCACAAGTGCTCAACCTTGT+GGG | 0.522508 | 4_2:-21134637 | None:intergenic |
| ATCACAAGTGCTCAACCTTG+TGG | 0.528515 | 4_2:-21134638 | None:intergenic |
| TGATGAGTTGAAGAAAGAGC+TGG | 0.537111 | 4_2:+21135340 | Msa0594080:CDS |
| CTTTCCTCGTGTGTGTCGAT+GGG | 0.543351 | 4_2:+21133675 | Msa0594080:CDS |
| GTCTATGCTCAAATTTGTGA+AGG | 0.545820 | 4_2:-21134791 | None:intergenic |
| TGTAGCTTGGGCGAGACCGA+TGG | 0.548428 | 4_2:-21130096 | None:intergenic |
| TTGAGCATAGATGAGGAAGG+AGG | 0.553551 | 4_2:+21134880 | Msa0594080:CDS |
| AAGCCTCCATTACCTCAGTA+AGG | 0.553879 | 4_2:-21131811 | None:intergenic |
| AGGTGGCAACGAGGATAAAA+GGG | 0.559740 | 4_2:+21134185 | Msa0594080:CDS |
| TAGAGAAGAAGAGATGAATG+CGG | 0.560084 | 4_2:+21134903 | Msa0594080:CDS |
| AGAGAAGAAGAGATGAATGC+GGG | 0.561139 | 4_2:+21134826 | Msa0594080:CDS |
| CACAAATTTGAGCATAGATG+AGG | 0.563310 | 4_2:+21134873 | Msa0594080:CDS |
| CCATCAATGCTCGAATTGGA+GGG | 0.563743 | 4_2:-21134715 | None:intergenic |
| CGCCCAAGCTACAGAACCGC+CGG | 0.563793 | 4_2:+21130106 | Msa0594080:CDS |
| TCCAAATCATTCTCTTAACA+AGG | 0.567181 | 4_2:+21131784 | Msa0594080:CDS |
| GATAACAATGTGCAGTATGT+TGG | 0.569504 | 4_2:+21132235 | Msa0594080:CDS |
| ACCGATGGAAGAAATTCTGA+TGG | 0.572225 | 4_2:-21130081 | None:intergenic |
| CACAAATTTGAGCATAGACA+AGG | 0.572292 | 4_2:+21134795 | Msa0594080:CDS |
| GGGGCACCGTGTGGAGCTGG+CGG | 0.574824 | 4_2:+21131925 | Msa0594080:CDS |
| TGTTCGATAAATTCTCTCTA+CGG | 0.575069 | 4_2:-21135298 | None:intergenic |
| TCCAGTTGTGGGGCACCGTG+TGG | 0.576327 | 4_2:+21131916 | Msa0594080:CDS |
| ATCTATGCTCAAATTTGTGA+AGG | 0.576382 | 4_2:-21134869 | None:intergenic |
| TTATTGAAGATTTGTGTCAG+TGG | 0.579200 | 4_2:+21132197 | Msa0594080:CDS |
| TTTCCTTACTGAGGTAATGG+AGG | 0.579719 | 4_2:+21131808 | Msa0594080:CDS |
| CCATCGACACACACGAGGAA+AGG | 0.580239 | 4_2:-21133674 | None:intergenic |
| TGCTTCACATGCGAAGAGAA+AGG | 0.580579 | 4_2:+21131985 | Msa0594080:CDS |
| TAAACTAAATCCAATTTCCC+CGG | 0.585016 | 4_2:-21131867 | None:intergenic |
| TAATATTATCTGTTTGTTAG+GGG | 0.585387 | 4_2:+21135482 | Msa0594080:three_prime_UTR |
| GCTCCTCCGCCAGCTCCACA+CGG | 0.591770 | 4_2:-21131931 | None:intergenic |
| CACAAATTTGAGCATATCCG+AGG | 0.597633 | 4_2:+21134951 | Msa0594080:CDS |
| ATCAATGCTCGAATTGGAGG+GGG | 0.600981 | 4_2:-21134713 | None:intergenic |
| AGGAAGGAGGTAGAGAAGAA+GGG | 0.604766 | 4_2:+21134971 | Msa0594080:CDS |
| ACATGAGCAGGTTTCAGATG+TGG | 0.606419 | 4_2:+21134531 | Msa0594080:intron |
| CATCAATGCTCGAATTGGAG+GGG | 0.607072 | 4_2:-21134714 | None:intergenic |
| AGTATCTCTAGTAAGATACA+TGG | 0.611272 | 4_2:+21134571 | Msa0594080:CDS |
| AGCAAGGCTTGATTCTATTG+GGG | 0.619954 | 4_2:+21132027 | Msa0594080:CDS |
| GAATGCGGGCAATCTCATAA+CGG | 0.623936 | 4_2:+21134840 | Msa0594080:CDS |
| TATTGAAAATCTGATAGTAG+AGG | 0.629533 | 4_2:+21134687 | Msa0594080:CDS |
| AACAATGTGCAGTATGTTGG+TGG | 0.629918 | 4_2:+21132238 | Msa0594080:CDS |
| TAGAGAAGAAGAGATGAATG+CGG | 0.629988 | 4_2:+21134825 | Msa0594080:CDS |
| AGTAGGAAGAGAGCCAGAGT+TGG | 0.631049 | 4_2:+21135047 | Msa0594080:CDS |
| GCCCGAAAATCTGATTATTG+GGG | 0.632581 | 4_2:+21135020 | Msa0594080:CDS |
| AAGATACATGGAGAAGACGA+GGG | 0.635295 | 4_2:+21134583 | Msa0594080:CDS |
| CTATGACTACTCTTGAAGCA+AGG | 0.635436 | 4_2:+21132011 | Msa0594080:CDS |
| GGATATGCTCAAATTTGTGA+AGG | 0.646774 | 4_2:-21134947 | None:intergenic |
| TAAGATACATGGAGAAGACG+AGG | 0.646778 | 4_2:+21134582 | Msa0594080:CDS |
| AATTTGAGCATATCCGAGGA+AGG | 0.647829 | 4_2:+21134955 | Msa0594080:CDS |
| TAGTCAGAGCTGAATGTAGG+GGG | 0.650037 | 4_2:-21135099 | None:intergenic |
| TGAGTGAGCTTAAACACTAG+TGG | 0.668228 | 4_2:-21129961 | None:intergenic |
| GAATGCGGGAAATCTCATAA+CGG | 0.673472 | 4_2:+21134918 | Msa0594080:CDS |
| AAAGCAATGGGGTTACTAGG+TGG | 0.677681 | 4_2:+21134168 | Msa0594080:CDS |
| TTGAGCATATCCGAGGAAGG+AGG | 0.679006 | 4_2:+21134958 | Msa0594080:CDS |
| ATAGTCAGAGCTGAATGTAG+GGG | 0.680263 | 4_2:-21135100 | None:intergenic |
| ATCATAGTAAATCTCACCCG+AGG | 0.686338 | 4_2:+21133698 | Msa0594080:CDS |
| TGCGGGAAATCTCATAACGG+AGG | 0.691741 | 4_2:+21134921 | Msa0594080:CDS |
| TAGTAGAGGACACTCCCACA+AGG | 0.691801 | 4_2:+21134623 | Msa0594080:CDS |
| TGATCCCATCGACACACACG+AGG | 0.697389 | 4_2:-21133679 | None:intergenic |
| AATTTGAGCATAGATGAGGA+AGG | 0.700153 | 4_2:+21134877 | Msa0594080:CDS |
| GGTTGCTGAAACGCTCATCG+TGG | 0.712316 | 4_2:+21135068 | Msa0594080:CDS |
| TTGAGCATAGACAAGGAACG+AGG | 0.726610 | 4_2:+21134802 | Msa0594080:CDS |
| AAATCTCACCCGAGGCAACG+GGG | 0.746775 | 4_2:+21133706 | Msa0594080:CDS |
| GGGGTTACTAGGTGGCAACG+AGG | 0.750829 | 4_2:+21134176 | Msa0594080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAACATATATATGATAA+TGG | - | chr4_2:21132337-21132356 | None:intergenic | 10.0% |
| !! | ATTTATTAACAACATAATAA+TGG | + | chr4_2:21133072-21133091 | Msa0594080:intron | 10.0% |
| !!! | TAAAAAATTTAAAACTTGAA+TGG | - | chr4_2:21133185-21133204 | None:intergenic | 10.0% |
| !!! | AAAATTGTGTTTTAAATTGT+TGG | + | chr4_2:21131490-21131509 | Msa0594080:intron | 15.0% |
| !!! | ATTTTTGTTTTTTCTTTTTC+AGG | + | chr4_2:21131643-21131662 | Msa0594080:intron | 15.0% |
| !!! | ATATGTTTTAATTTATAGAC+AGG | + | chr4_2:21132355-21132374 | Msa0594080:intron | 15.0% |
| !!! | TATGTTTTAATTTATAGACA+GGG | + | chr4_2:21132356-21132375 | Msa0594080:intron | 15.0% |
| !! | AACAAAACATAAATAAATGA+GGG | - | chr4_2:21132532-21132551 | None:intergenic | 15.0% |
| !!! | AATAATGGAAAATCTTTTTA+TGG | + | chr4_2:21133087-21133106 | Msa0594080:intron | 15.0% |
| !!! | AAATTTTTTAACTCTGTATA+TGG | + | chr4_2:21133195-21133214 | Msa0594080:intron | 15.0% |
| !!! | TCTTTCTTTTTAATTTTTAG+TGG | + | chr4_2:21133426-21133445 | Msa0594080:intron | 15.0% |
| !!! | TTTTTATTAGTAAAAAGTAC+AGG | + | chr4_2:21133516-21133535 | Msa0594080:intron | 15.0% |
| !! | TTAATTAATCTGAGAATTAA+AGG | - | chr4_2:21133791-21133810 | None:intergenic | 15.0% |
| !! | AACAAAATATAGCATTAAAA+TGG | - | chr4_2:21133874-21133893 | None:intergenic | 15.0% |
| !! | TATAATATTATCTGTTTGTT+AGG | + | chr4_2:21135480-21135499 | Msa0594080:three_prime_UTR | 15.0% |
| !!! | ATAATATTATCTGTTTGTTA+GGG | + | chr4_2:21135481-21135500 | Msa0594080:three_prime_UTR | 15.0% |
| !!! | GATTTGAAATAATGAAAGTA+GGG | - | chr4_2:21130005-21130024 | None:intergenic | 20.0% |
| !! | TCTGTTAATTCAACTAAAAA+CGG | - | chr4_2:21130275-21130294 | None:intergenic | 20.0% |
| !!! | AATTTTATATTTAACCGACT+TGG | + | chr4_2:21130315-21130334 | Msa0594080:intron | 20.0% |
| !!! | ATTTTATATTTAACCGACTT+GGG | + | chr4_2:21130316-21130335 | Msa0594080:intron | 20.0% |
| !!! | CTTTATTTTATCATTTGCTA+TGG | + | chr4_2:21131287-21131306 | Msa0594080:intron | 20.0% |
| !! | ACAAAACATAAATAAATGAG+GGG | - | chr4_2:21132531-21132550 | None:intergenic | 20.0% |
| !! | GAACAAAACATAAATAAATG+AGG | - | chr4_2:21132533-21132552 | None:intergenic | 20.0% |
| !!! | CATAAAAACAAGAATCATTT+TGG | + | chr4_2:21132959-21132978 | Msa0594080:intron | 20.0% |
| !! | AATTATTATAGTGTAGTAGT+TGG | + | chr4_2:21133018-21133037 | Msa0594080:intron | 20.0% |
| !! | ATTATTATAGTGTAGTAGTT+GGG | + | chr4_2:21133019-21133038 | Msa0594080:intron | 20.0% |
| !!! | ATTTTATTTTCTACTTGTCT+AGG | + | chr4_2:21133243-21133262 | Msa0594080:intron | 20.0% |
| !! | ATTGATACCAAATCAATAAT+TGG | - | chr4_2:21133285-21133304 | None:intergenic | 20.0% |
| !! | ATTTCAAAGACCAAAAATAT+TGG | - | chr4_2:21133984-21134003 | None:intergenic | 20.0% |
| !!! | ATTTTTGGTCTTTGAAATAA+TGG | + | chr4_2:21133986-21134005 | Msa0594080:intron | 20.0% |
| !! | TATAATATCAAAGCAAGTTA+GGG | - | chr4_2:21134014-21134033 | None:intergenic | 20.0% |
| !! | ATATAATATCAAAGCAAGTT+AGG | - | chr4_2:21134015-21134034 | None:intergenic | 20.0% |
| !! | GTATATATTTGCAGATAATT+TGG | + | chr4_2:21134100-21134119 | Msa0594080:intron | 20.0% |
| !! | AGACATAATAAAAAAAGCAA+TGG | + | chr4_2:21134155-21134174 | Msa0594080:CDS | 20.0% |
| !! | GACATAATAAAAAAAGCAAT+GGG | + | chr4_2:21134156-21134175 | Msa0594080:CDS | 20.0% |
| !! | ACATAATAAAAAAAGCAATG+GGG | + | chr4_2:21134157-21134176 | Msa0594080:CDS | 20.0% |
| !!! | ATATCAATTTTCTACCATTT+TGG | + | chr4_2:21134428-21134447 | Msa0594080:intron | 20.0% |
| !!! | TTCTATAGGAGTTTTATTAT+TGG | + | chr4_2:21134473-21134492 | Msa0594080:intron | 20.0% |
| !!! | ATCATTCTCCTTTTTTAATT+GGG | - | chr4_2:21135324-21135343 | None:intergenic | 20.0% |
| !! | AAGAAATTTAAATTGCTTTG+CGG | + | chr4_2:21135373-21135392 | Msa0594080:CDS | 20.0% |
| !!! | TAATATTATCTGTTTGTTAG+GGG | + | chr4_2:21135482-21135501 | Msa0594080:three_prime_UTR | 20.0% |
| !! | CGATTTGAAATAATGAAAGT+AGG | - | chr4_2:21130006-21130025 | None:intergenic | 25.0% |
| !! | GATTTTCTCATTGTTGAATT+AGG | - | chr4_2:21130062-21130081 | None:intergenic | 25.0% |
| ! | ATAAAATTTCAAAACCACCT+GGG | - | chr4_2:21130303-21130322 | None:intergenic | 25.0% |
| ! | TATAAAATTTCAAAACCACC+TGG | - | chr4_2:21130304-21130323 | None:intergenic | 25.0% |
| ! | TTAGTTGAATGTGTCTAATA+AGG | + | chr4_2:21130466-21130485 | Msa0594080:intron | 25.0% |
| !! | AGATGAAAGTGAAATTGTTT+TGG | + | chr4_2:21130609-21130628 | Msa0594080:intron | 25.0% |
| !!! | TGAAATTGGTTTTAGATTGT+TGG | + | chr4_2:21130784-21130803 | Msa0594080:intron | 25.0% |
| ! | TAATTGTAGATTGTAATCAC+CGG | + | chr4_2:21130900-21130919 | Msa0594080:intron | 25.0% |
| ! | CATTTGATATATTGAGACAT+GGG | - | chr4_2:21131075-21131094 | None:intergenic | 25.0% |
| ! | ACATTTGATATATTGAGACA+TGG | - | chr4_2:21131076-21131095 | None:intergenic | 25.0% |
| ! | TTTAGTTGTTCATTCAAACA+AGG | + | chr4_2:21131366-21131385 | Msa0594080:intron | 25.0% |
| !!! | TTTGTTTTTTCTTTTTCAGG+CGG | + | chr4_2:21131646-21131665 | Msa0594080:intron | 25.0% |
| ! | TTGGAAAATAACTCGTATTA+CGG | - | chr4_2:21132480-21132499 | None:intergenic | 25.0% |
| ! | CAAAACATAAATAAATGAGG+GGG | - | chr4_2:21132530-21132549 | None:intergenic | 25.0% |
| ! | TAGTGTAAATCTACTATGTT+TGG | - | chr4_2:21132707-21132726 | None:intergenic | 25.0% |
| !!! | GTGTTTTCTTACTTTTGTAT+GGG | + | chr4_2:21132981-21133000 | Msa0594080:intron | 25.0% |
| !! | ATTCATACAGAATCTGATTT+TGG | - | chr4_2:21133054-21133073 | None:intergenic | 25.0% |
| ! | AAAGTTTACATAAACAGACA+AGG | - | chr4_2:21133143-21133162 | None:intergenic | 25.0% |
| !! | TAGTTCTCCAATTATTGATT+TGG | + | chr4_2:21133275-21133294 | Msa0594080:intron | 25.0% |
| ! | AAAATGTCTTAACTGGATTA+AGG | + | chr4_2:21133314-21133333 | Msa0594080:intron | 25.0% |
| ! | TTGCAAATAAAATGTGTGTA+TGG | + | chr4_2:21133451-21133470 | Msa0594080:intron | 25.0% |
| !! | GTTTTTCTTACCCATTTTAT+TGG | + | chr4_2:21133588-21133607 | Msa0594080:intron | 25.0% |
| ! | ATATCTTGATCTTGCAAATT+TGG | - | chr4_2:21133652-21133671 | None:intergenic | 25.0% |
| ! | TTCTCAGATTAATTAAGCAT+TGG | + | chr4_2:21133795-21133814 | Msa0594080:intron | 25.0% |
| ! | ACTTGAAAATGAAAAGTGAA+CGG | - | chr4_2:21133935-21133954 | None:intergenic | 25.0% |
| !!! | TTTTTTGTTTTATGCGTATC+TGG | + | chr4_2:21134271-21134290 | Msa0594080:intron | 25.0% |
| ! | TGACTGGTATATAAAACTTA+AGG | + | chr4_2:21134294-21134313 | Msa0594080:intron | 25.0% |
| ! | GTATATAAAACTTAAGGAGA+GGG | + | chr4_2:21134300-21134319 | Msa0594080:intron | 25.0% |
| ! | TCATTTATTGAACAAATGAC+TGG | - | chr4_2:21134371-21134390 | None:intergenic | 25.0% |
| ! | TTGAAATAGAAGAACCAAAA+TGG | - | chr4_2:21134445-21134464 | None:intergenic | 25.0% |
| ! | TTTCAATGCTATTCTTCTAT+AGG | + | chr4_2:21134459-21134478 | Msa0594080:intron | 25.0% |
| ! | TATTGAAAATCTGATAGTAG+AGG | + | chr4_2:21134687-21134706 | Msa0594080:CDS | 25.0% |
| ! | TTTATTCAGCTCTATATCTT+TGG | + | chr4_2:21135130-21135149 | Msa0594080:intron | 25.0% |
| ! | TTATTCAGCTCTATATCTTT+GGG | + | chr4_2:21135131-21135150 | Msa0594080:intron | 25.0% |
| ! | AAGTAACTTCTTTGATTAAC+AGG | + | chr4_2:21135205-21135224 | Msa0594080:intron | 25.0% |
| ! | TTGATTAACAGGATGATTTA+AGG | + | chr4_2:21135216-21135235 | Msa0594080:intron | 25.0% |
| !!! | CATCATTCTCCTTTTTTAAT+TGG | - | chr4_2:21135325-21135344 | None:intergenic | 25.0% |
| ! | CCATAATATCTCTTTCTATT+CGG | - | chr4_2:21135400-21135419 | None:intergenic | 25.0% |
| ! | TTTATTCAATTGCATCAGTT+TGG | - | chr4_2:21135427-21135446 | None:intergenic | 25.0% |
| TGAAAGTAGGGAAATGAAAA+CGG | - | chr4_2:21129993-21130012 | None:intergenic | 30.0% | |
| ! | TCTTCTTTCATTTTCTTCGT+TGG | + | chr4_2:21130032-21130051 | Msa0594080:five_prime_UTR | 30.0% |
| AAAACAAGTAATTGAGAGAG+AGG | - | chr4_2:21130144-21130163 | None:intergenic | 30.0% | |
| TACGTCTATTCAAAATTGAG+CGG | - | chr4_2:21130222-21130241 | None:intergenic | 30.0% | |
| ! | TCAATTTTGAATAGACGTAG+CGG | + | chr4_2:21130223-21130242 | Msa0594080:intron | 30.0% |
| TAATTCAACTAAAAACGGCA+AGG | - | chr4_2:21130270-21130289 | None:intergenic | 30.0% | |
| !! | TTAATTTCAGTGGGTTAGTT+TGG | + | chr4_2:21130411-21130430 | Msa0594080:intron | 30.0% |
| !!! | GTGAAATTGTTTTGGATTGT+TGG | + | chr4_2:21130617-21130636 | Msa0594080:intron | 30.0% |
| AAAATTGTAGAGTTATCCAC+CGG | + | chr4_2:21130724-21130743 | Msa0594080:intron | 30.0% | |
| CAATCTACAATTGCAATTGA+AGG | - | chr4_2:21130849-21130868 | None:intergenic | 30.0% | |
| ATACACTAAATGTTGAGAAC+TGG | + | chr4_2:21131032-21131051 | Msa0594080:intron | 30.0% | |
| TACACTAAATGTTGAGAACT+GGG | + | chr4_2:21131033-21131052 | Msa0594080:intron | 30.0% | |
| GGTTTGACATTCGATATATT+GGG | - | chr4_2:21131106-21131125 | None:intergenic | 30.0% | |
| AGGTTTGACATTCGATATAT+TGG | - | chr4_2:21131107-21131126 | None:intergenic | 30.0% | |
| ! | TTTGCTATGGAAATAGCTTA+TGG | + | chr4_2:21131300-21131319 | Msa0594080:intron | 30.0% |
| TAGTGACATTTAGTATACTG+GGG | - | chr4_2:21131434-21131453 | None:intergenic | 30.0% | |
| GTAGTGACATTTAGTATACT+GGG | - | chr4_2:21131435-21131454 | None:intergenic | 30.0% | |
| AGTAGTGACATTTAGTATAC+TGG | - | chr4_2:21131436-21131455 | None:intergenic | 30.0% | |
| TAGACTGTAACTTAGAACTA+TGG | + | chr4_2:21131568-21131587 | Msa0594080:intron | 30.0% | |
| GAACTATGGCAAAAGAAAAT+TGG | + | chr4_2:21131582-21131601 | Msa0594080:intron | 30.0% | |
| TCCAAATCATTCTCTTAACA+AGG | + | chr4_2:21131784-21131803 | Msa0594080:CDS | 30.0% | |
| ACCTTGTTAAGAGAATGATT+TGG | - | chr4_2:21131788-21131807 | None:intergenic | 30.0% | |
| TAAACTAAATCCAATTTCCC+CGG | - | chr4_2:21131870-21131889 | None:intergenic | 30.0% | |
| !! | ATTAGACGCTGCTTTAATTT+TGG | + | chr4_2:21131889-21131908 | Msa0594080:CDS | 30.0% |
| !! | TTAGACGCTGCTTTAATTTT+GGG | + | chr4_2:21131890-21131909 | Msa0594080:CDS | 30.0% |
| ! | ATTGTTTTCTGAATTGGAAG+AGG | + | chr4_2:21131955-21131974 | Msa0594080:CDS | 30.0% |
| !! | AGCTTTTTGCTTTTCACAAT+TGG | + | chr4_2:21132076-21132095 | Msa0594080:CDS | 30.0% |
| !! | GCTTTTTGCTTTTCACAATT+GGG | + | chr4_2:21132077-21132096 | Msa0594080:CDS | 30.0% |
| ! | ACTTTTCTTTCTTCCAATGA+TGG | + | chr4_2:21132100-21132119 | Msa0594080:CDS | 30.0% |
| ! | CTTTTCTTTCTTCCAATGAT+GGG | + | chr4_2:21132101-21132120 | Msa0594080:CDS | 30.0% |
| ! | TCAAGATACTTGTCTTTTCT+TGG | + | chr4_2:21132133-21132152 | Msa0594080:CDS | 30.0% |
| ! | CAAGATACTTGTCTTTTCTT+GGG | + | chr4_2:21132134-21132153 | Msa0594080:CDS | 30.0% |
| TTATTGAAGATTTGTGTCAG+TGG | + | chr4_2:21132197-21132216 | Msa0594080:CDS | 30.0% | |
| !! | TTTCCCTTATTTAGGTTGTT+TGG | + | chr4_2:21132416-21132435 | Msa0594080:intron | 30.0% |
| ! | ATGTTCTCCTTGAGTTTTTA+AGG | + | chr4_2:21132443-21132462 | Msa0594080:intron | 30.0% |
| ! | TGTTCTCCTTGAGTTTTTAA+GGG | + | chr4_2:21132444-21132463 | Msa0594080:intron | 30.0% |
| ! | CTGAAGATAGTTATCGATTA+GGG | + | chr4_2:21132577-21132596 | Msa0594080:intron | 30.0% |
| TGAAATAAATCTCACCACAT+AGG | + | chr4_2:21132754-21132773 | Msa0594080:intron | 30.0% | |
| !! | GGTGTTTTCTTACTTTTGTA+TGG | + | chr4_2:21132980-21132999 | Msa0594080:intron | 30.0% |
| ! | TATTTTCTACTTGTCTAGGA+AGG | + | chr4_2:21133247-21133266 | Msa0594080:intron | 30.0% |
| AGTTCACAAAATGTCTTAAC+TGG | + | chr4_2:21133307-21133326 | Msa0594080:intron | 30.0% | |
| ACTGAAAGATTGAATTGACA+TGG | - | chr4_2:21133394-21133413 | None:intergenic | 30.0% | |
| CATGTCTGTTCCAATAAAAT+GGG | - | chr4_2:21133601-21133620 | None:intergenic | 30.0% | |
| !! | ATGAGCATTTTGATATAGCA+CGG | + | chr4_2:21133626-21133645 | Msa0594080:CDS | 30.0% |
| ! | CTCAATTTTCCATGTTATCA+GGG | - | chr4_2:21133823-21133842 | None:intergenic | 30.0% |
| ! | TCTCAATTTTCCATGTTATC+AGG | - | chr4_2:21133824-21133843 | None:intergenic | 30.0% |
| GGTATATAAAACTTAAGGAG+AGG | + | chr4_2:21134299-21134318 | Msa0594080:intron | 30.0% | |
| ! | AAGATCAGTGCATTTTATGT+TGG | + | chr4_2:21134335-21134354 | Msa0594080:intron | 30.0% |
| ! | CAATTTCACTATTGATTGAG+AGG | + | chr4_2:21134505-21134524 | Msa0594080:intron | 30.0% |
| AGTATCTCTAGTAAGATACA+TGG | + | chr4_2:21134571-21134590 | Msa0594080:CDS | 30.0% | |
| AGTTGAAAAACTTGTGATTG+AGG | + | chr4_2:21134765-21134784 | Msa0594080:CDS | 30.0% | |
| ATCTATGCTCAAATTTGTGA+AGG | - | chr4_2:21134872-21134891 | None:intergenic | 30.0% | |
| TTAACAGGATGATTTAAGGA+AGG | + | chr4_2:21135220-21135239 | Msa0594080:intron | 30.0% | |
| CTTCAATTTCTTCCATTTGT+TGG | - | chr4_2:21135274-21135293 | None:intergenic | 30.0% | |
| TGTTCGATAAATTCTCTCTA+CGG | - | chr4_2:21135301-21135320 | None:intergenic | 30.0% | |
| ATCGAACACCCAATTAAAAA+AGG | + | chr4_2:21135313-21135332 | Msa0594080:CDS | 30.0% | |
| CCGAATAGAAAGAGATATTA+TGG | + | chr4_2:21135397-21135416 | Msa0594080:CDS | 30.0% | |
| ! | AAACATGCTATCCTTGATTT+TGG | + | chr4_2:21135444-21135463 | Msa0594080:exon | 30.0% |
| ! | AACATGCTATCCTTGATTTT+GGG | + | chr4_2:21135445-21135464 | Msa0594080:exon | 30.0% |
| TCCATCAGAATTTCTTCCAT+CGG | + | chr4_2:21130080-21130099 | Msa0594080:CDS | 35.0% | |
| !!! | CTTGTTTTGTTTCGTGTTTG+CGG | + | chr4_2:21130156-21130175 | Msa0594080:intron | 35.0% |
| !! | TAGCGGATTTGGTAAAAAAG+CGG | + | chr4_2:21130240-21130259 | Msa0594080:intron | 35.0% |
| !! | TATATTTAACCGACTTGGGT+TGG | + | chr4_2:21130320-21130339 | Msa0594080:intron | 35.0% |
| ! | GTGATGTTAGTTTGGGAATT+CGG | + | chr4_2:21130347-21130366 | Msa0594080:intron | 35.0% |
| ! | ACTCTGGTGTTAATTTCAGT+GGG | + | chr4_2:21130402-21130421 | Msa0594080:intron | 35.0% |
| !! | ATTAGTGAAGTGTTGAGAAG+TGG | + | chr4_2:21130514-21130533 | Msa0594080:intron | 35.0% |
| TTACGAGACGAAAGTGAAAT+TGG | + | chr4_2:21130770-21130789 | Msa0594080:intron | 35.0% | |
| ACACTAAATGTTGAGAACTG+GGG | + | chr4_2:21131034-21131053 | Msa0594080:intron | 35.0% | |
| GTTTGAGAGAGCTTATGAAA+CGG | + | chr4_2:21131160-21131179 | Msa0594080:intron | 35.0% | |
| AGTGACATTTAGTATACTGG+GGG | - | chr4_2:21131433-21131452 | None:intergenic | 35.0% | |
| ACTATATGAACCGTACTTAC+AGG | + | chr4_2:21131459-21131478 | Msa0594080:intron | 35.0% | |
| ! | TAACAAGGTTTTCCTTACTG+AGG | + | chr4_2:21131799-21131818 | Msa0594080:CDS | 35.0% |
| !!! | GAACGACATGTTTTTGAGAT+CGG | + | chr4_2:21131842-21131861 | Msa0594080:CDS | 35.0% |
| !! | TAGACGCTGCTTTAATTTTG+GGG | + | chr4_2:21131891-21131910 | Msa0594080:CDS | 35.0% |
| ! | GGAGCAATTGTTTTCTGAAT+TGG | + | chr4_2:21131949-21131968 | Msa0594080:CDS | 35.0% |
| AAGCAAGGCTTGATTCTATT+GGG | + | chr4_2:21132026-21132045 | Msa0594080:CDS | 35.0% | |
| ! | ATGTGAGTGATGATTTTGTG+AGG | + | chr4_2:21132053-21132072 | Msa0594080:CDS | 35.0% |
| ! | CTTGTCTTTTCTTGGGAATT+TGG | + | chr4_2:21132141-21132160 | Msa0594080:CDS | 35.0% |
| !!! | ATGATGTTTCTGGTTTTGCT+TGG | + | chr4_2:21132164-21132183 | Msa0594080:CDS | 35.0% |
| !!! | TGATGTTTCTGGTTTTGCTT+GGG | + | chr4_2:21132165-21132184 | Msa0594080:CDS | 35.0% |
| GATAACAATGTGCAGTATGT+TGG | + | chr4_2:21132235-21132254 | Msa0594080:CDS | 35.0% | |
| CCACCAAACAACCTAAATAA+GGG | - | chr4_2:21132422-21132441 | None:intergenic | 35.0% | |
| !! | CCTTATTTAGGTTGTTTGGT+GGG | + | chr4_2:21132420-21132439 | Msa0594080:intron | 35.0% |
| AATCCTCCCTTAAAAACTCA+AGG | - | chr4_2:21132453-21132472 | None:intergenic | 35.0% | |
| ATACACCAAACTCATTTGAC+AGG | - | chr4_2:21132506-21132525 | None:intergenic | 35.0% | |
| ! | GCTGAAGATAGTTATCGATT+AGG | + | chr4_2:21132576-21132595 | Msa0594080:intron | 35.0% |
| TATATACTAGCATCCCAACT+AGG | - | chr4_2:21132609-21132628 | None:intergenic | 35.0% | |
| AAGGCATACTATACATAGTC+GGG | - | chr4_2:21133124-21133143 | None:intergenic | 35.0% | |
| CAAGGCATACTATACATAGT+CGG | - | chr4_2:21133125-21133144 | None:intergenic | 35.0% | |
| CCATGTCTGTTCCAATAAAA+TGG | - | chr4_2:21133602-21133621 | None:intergenic | 35.0% | |
| ! | CCATTTTATTGGAACAGACA+TGG | + | chr4_2:21133599-21133618 | Msa0594080:intron | 35.0% |
| AGAAAAGATGTCTCTCATCA+TGG | + | chr4_2:21133841-21133860 | Msa0594080:intron | 35.0% | |
| ! | GAATCTGCAGCCAATATTTT+TGG | + | chr4_2:21133971-21133990 | Msa0594080:intron | 35.0% |
| GTACTACGATGATAGAAAAG+TGG | + | chr4_2:21134040-21134059 | Msa0594080:intron | 35.0% | |
| ATTTGTAACTCTCCAGAAGT+AGG | - | chr4_2:21134135-21134154 | None:intergenic | 35.0% | |
| AAAAAAGCAATGGGGTTACT+AGG | + | chr4_2:21134165-21134184 | Msa0594080:CDS | 35.0% | |
| !! | TTTTGAGAATGAGGTAGTAG+AGG | + | chr4_2:21134609-21134628 | Msa0594080:CDS | 35.0% |
| GTCTATGCTCAAATTTGTGA+AGG | - | chr4_2:21134794-21134813 | None:intergenic | 35.0% | |
| CACAAATTTGAGCATAGACA+AGG | + | chr4_2:21134795-21134814 | Msa0594080:CDS | 35.0% | |
| TAGAGAAGAAGAGATGAATG+CGG | + | chr4_2:21134825-21134844 | Msa0594080:CDS | 35.0% | |
| CACAAATTTGAGCATAGATG+AGG | + | chr4_2:21134873-21134892 | Msa0594080:CDS | 35.0% | |
| AATTTGAGCATAGATGAGGA+AGG | + | chr4_2:21134877-21134896 | Msa0594080:CDS | 35.0% | |
| TAGAGAAGAAGAGATGAATG+CGG | + | chr4_2:21134825-21134844 | Msa0594080:CDS | 35.0% | |
| GGATATGCTCAAATTTGTGA+AGG | - | chr4_2:21134950-21134969 | None:intergenic | 35.0% | |
| AAGCCCGAAAATCTGATTAT+TGG | + | chr4_2:21135018-21135037 | Msa0594080:CDS | 35.0% | |
| AGCCCGAAAATCTGATTATT+GGG | + | chr4_2:21135019-21135038 | Msa0594080:CDS | 35.0% | |
| ! | TCCCCAATAATCAGATTTTC+GGG | - | chr4_2:21135024-21135043 | None:intergenic | 35.0% |
| ! | GTCCCCAATAATCAGATTTT+CGG | - | chr4_2:21135025-21135044 | None:intergenic | 35.0% |
| CACACAAAATATGTGCACAA+TGG | + | chr4_2:21135171-21135190 | Msa0594080:intron | 35.0% | |
| GCTGAAAATAAGCCAACAAA+TGG | + | chr4_2:21135259-21135278 | Msa0594080:CDS | 35.0% | |
| TGAGTGAGCTTAAACACTAG+TGG | - | chr4_2:21129964-21129983 | None:intergenic | 40.0% | |
| ACCGATGGAAGAAATTCTGA+TGG | - | chr4_2:21130084-21130103 | None:intergenic | 40.0% | |
| !! | TTGAATAGACGTAGCGGATT+TGG | + | chr4_2:21130229-21130248 | Msa0594080:intron | 40.0% |
| ! | TTGGTCTGGTGATGTTAGTT+TGG | + | chr4_2:21130339-21130358 | Msa0594080:intron | 40.0% |
| ! | TGGTCTGGTGATGTTAGTTT+GGG | + | chr4_2:21130340-21130359 | Msa0594080:intron | 40.0% |
| !! | GTTTCAAGTTCGATTCACTC+TGG | + | chr4_2:21130386-21130405 | Msa0594080:intron | 40.0% |
| ! | CACTCTGGTGTTAATTTCAG+TGG | + | chr4_2:21130401-21130420 | Msa0594080:intron | 40.0% |
| CGTAAGTACATCTCAGATGA+TGG | - | chr4_2:21130589-21130608 | None:intergenic | 40.0% | |
| !! | GTTATGAGGTTGATGAGAGT+TGG | + | chr4_2:21130932-21130951 | Msa0594080:intron | 40.0% |
| CTTATGTCAGTACGTGTCTA+AGG | - | chr4_2:21131127-21131146 | None:intergenic | 40.0% | |
| ! | ATTAGCTCTTCATGATAGCC+TGG | + | chr4_2:21131221-21131240 | Msa0594080:intron | 40.0% |
| ! | TTAGCTCTTCATGATAGCCT+GGG | + | chr4_2:21131222-21131241 | Msa0594080:intron | 40.0% |
| AAGGCCTAAATGTTGAGAGT+GGG | + | chr4_2:21131385-21131404 | Msa0594080:intron | 40.0% | |
| GTGACATTTAGTATACTGGG+GGG | - | chr4_2:21131432-21131451 | None:intergenic | 40.0% | |
| TTGCGTTCTTCCTGTAAGTA+CGG | - | chr4_2:21131472-21131491 | None:intergenic | 40.0% | |
| GAAGCGCGTTCAAAGTTTAA+CGG | + | chr4_2:21131709-21131728 | Msa0594080:CDS | 40.0% | |
| ! | GGTTTTCCTTACTGAGGTAA+TGG | + | chr4_2:21131805-21131824 | Msa0594080:CDS | 40.0% |
| ! | TTTCCTTACTGAGGTAATGG+AGG | + | chr4_2:21131808-21131827 | Msa0594080:CDS | 40.0% |
| !!! | CATGTTTTTGAGATCGGTTC+CGG | + | chr4_2:21131848-21131867 | Msa0594080:CDS | 40.0% |
| !!! | ATGTTTTTGAGATCGGTTCC+GGG | + | chr4_2:21131849-21131868 | Msa0594080:CDS | 40.0% |
| !! | AATTTTGGGGATTCCAGTTG+TGG | + | chr4_2:21131904-21131923 | Msa0594080:CDS | 40.0% |
| !! | ATTTTGGGGATTCCAGTTGT+GGG | + | chr4_2:21131905-21131924 | Msa0594080:CDS | 40.0% |
| TCTGAATTGGAAGAGGAGTA+TGG | + | chr4_2:21131962-21131981 | Msa0594080:CDS | 40.0% | |
| CTATGACTACTCTTGAAGCA+AGG | + | chr4_2:21132011-21132030 | Msa0594080:CDS | 40.0% | |
| GAAGCAAGGCTTGATTCTAT+TGG | + | chr4_2:21132025-21132044 | Msa0594080:CDS | 40.0% | |
| AGCAAGGCTTGATTCTATTG+GGG | + | chr4_2:21132027-21132046 | Msa0594080:CDS | 40.0% | |
| ! | TTCTTCCAATGATGGGAAAG+TGG | + | chr4_2:21132108-21132127 | Msa0594080:CDS | 40.0% |
| TGAATCCACTTTCCCATCAT+TGG | - | chr4_2:21132116-21132135 | None:intergenic | 40.0% | |
| GGGAATTTGGATGATGTTTC+TGG | + | chr4_2:21132154-21132173 | Msa0594080:CDS | 40.0% | |
| !!! | GATGTTTCTGGTTTTGCTTG+GGG | + | chr4_2:21132166-21132185 | Msa0594080:CDS | 40.0% |
| AACAATGTGCAGTATGTTGG+TGG | + | chr4_2:21132238-21132257 | Msa0594080:CDS | 40.0% | |
| GCCAAAAAGCTTTCCAATCA+CGG | + | chr4_2:21132391-21132410 | Msa0594080:intron | 40.0% | |
| CCAAAAAGCTTTCCAATCAC+GGG | + | chr4_2:21132392-21132411 | Msa0594080:intron | 40.0% | |
| AATAAGGGAAATCCCGTGAT+TGG | - | chr4_2:21132407-21132426 | None:intergenic | 40.0% | |
| ! | TCACGGGATTTCCCTTATTT+AGG | + | chr4_2:21132408-21132427 | Msa0594080:intron | 40.0% |
| !! | CCCTTATTTAGGTTGTTTGG+TGG | + | chr4_2:21132419-21132438 | Msa0594080:intron | 40.0% |
| CCCACCAAACAACCTAAATA+AGG | - | chr4_2:21132423-21132442 | None:intergenic | 40.0% | |
| !! | TCTCCTTGAGTTTTTAAGGG+AGG | + | chr4_2:21132447-21132466 | Msa0594080:intron | 40.0% |
| AAACTCATTTGACAGGAGCT+TGG | - | chr4_2:21132499-21132518 | None:intergenic | 40.0% | |
| AAGCTCCTGTCAAATGAGTT+TGG | + | chr4_2:21132498-21132517 | Msa0594080:intron | 40.0% | |
| TTGGGATGCTAGTATATAGC+TGG | + | chr4_2:21132611-21132630 | Msa0594080:intron | 40.0% | |
| TCACCACATAGGTGTTTGTT+GGG | + | chr4_2:21132765-21132784 | Msa0594080:intron | 40.0% | |
| TATCCCAACAAACACCTATG+TGG | - | chr4_2:21132771-21132790 | None:intergenic | 40.0% | |
| CATTCAATCACTTCTCACTG+TGG | - | chr4_2:21132822-21132841 | None:intergenic | 40.0% | |
| ATCATAGTAAATCTCACCCG+AGG | + | chr4_2:21133698-21133717 | Msa0594080:CDS | 40.0% | |
| TAAGGATCTACATGACGATC+AGG | + | chr4_2:21133741-21133760 | Msa0594080:CDS | 40.0% | |
| TACATGACGATCAGGTAACT+TGG | + | chr4_2:21133749-21133768 | Msa0594080:intron | 40.0% | |
| ACATGACGATCAGGTAACTT+GGG | + | chr4_2:21133750-21133769 | Msa0594080:intron | 40.0% | |
| ! | TTTTATGCGTATCTGGTGAC+TGG | + | chr4_2:21134278-21134297 | Msa0594080:intron | 40.0% |
| TAAGATACATGGAGAAGACG+AGG | + | chr4_2:21134582-21134601 | Msa0594080:CDS | 40.0% | |
| AAGATACATGGAGAAGACGA+GGG | + | chr4_2:21134583-21134602 | Msa0594080:CDS | 40.0% | |
| TTCACCATCAATGCTCGAAT+TGG | - | chr4_2:21134722-21134741 | None:intergenic | 40.0% | |
| AGAGAAGAAGAGATGAATGC+GGG | + | chr4_2:21134826-21134845 | Msa0594080:CDS | 40.0% | |
| AGAGAAGAAGAGATGAATGC+GGG | + | chr4_2:21134826-21134845 | Msa0594080:CDS | 40.0% | |
| GAATGCGGGAAATCTCATAA+CGG | + | chr4_2:21134918-21134937 | Msa0594080:CDS | 40.0% | |
| CACAAATTTGAGCATATCCG+AGG | + | chr4_2:21134951-21134970 | Msa0594080:CDS | 40.0% | |
| AATTTGAGCATATCCGAGGA+AGG | + | chr4_2:21134955-21134974 | Msa0594080:CDS | 40.0% | |
| GCCCGAAAATCTGATTATTG+GGG | + | chr4_2:21135020-21135039 | Msa0594080:CDS | 40.0% | |
| CTGATTATTGGGGACAAAGT+AGG | + | chr4_2:21135030-21135049 | Msa0594080:CDS | 40.0% | |
| ATAGTCAGAGCTGAATGTAG+GGG | - | chr4_2:21135103-21135122 | None:intergenic | 40.0% | |
| CATAGTCAGAGCTGAATGTA+GGG | - | chr4_2:21135104-21135123 | None:intergenic | 40.0% | |
| ACATAGTCAGAGCTGAATGT+AGG | - | chr4_2:21135105-21135124 | None:intergenic | 40.0% | |
| ! | TGATGAGTTGAAGAAAGAGC+TGG | + | chr4_2:21135340-21135359 | Msa0594080:CDS | 40.0% |
| ! | TGTTTGTTAGGGGTTGTGTT+AGG | + | chr4_2:21135492-21135511 | Msa0594080:three_prime_UTR | 40.0% |
| ! | AGAGAGGAAGAGAGAAGTAC+CGG | - | chr4_2:21130128-21130147 | None:intergenic | 45.0% |
| ! | CGGATTTGGTAAAAAAGCGG+CGG | + | chr4_2:21130243-21130262 | Msa0594080:intron | 45.0% |
| TGAATTAACAGACCTGACCC+AGG | + | chr4_2:21130283-21130302 | Msa0594080:intron | 45.0% | |
| ATTTCAAAACCACCTGGGTC+AGG | - | chr4_2:21130298-21130317 | None:intergenic | 45.0% | |
| ACCTTCATACGCAACTCTAC+CGG | - | chr4_2:21130746-21130765 | None:intergenic | 45.0% | |
| ACCTCATAACGCAACTCTAC+CGG | - | chr4_2:21130922-21130941 | None:intergenic | 45.0% | |
| AGCCTGGGAAAACAGCTTAT+AGG | + | chr4_2:21131237-21131256 | Msa0594080:intron | 45.0% | |
| !! | AGCCTATAAGCTGTTTTCCC+AGG | - | chr4_2:21131242-21131261 | None:intergenic | 45.0% |
| CAAGGCCTAAATGTTGAGAG+TGG | + | chr4_2:21131384-21131403 | Msa0594080:intron | 45.0% | |
| AGGCCTAAATGTTGAGAGTG+GGG | + | chr4_2:21131386-21131405 | Msa0594080:intron | 45.0% | |
| TTCCCCCACTCTCAACATTT+AGG | - | chr4_2:21131392-21131411 | None:intergenic | 45.0% | |
| !! | AGATCTGCTATTTCGCGAAC+AGG | + | chr4_2:21131740-21131759 | Msa0594080:CDS | 45.0% |
| ! | GCTATTTCGCGAACAGGATT+CGG | + | chr4_2:21131746-21131765 | Msa0594080:CDS | 45.0% |
| AAGCCTCCATTACCTCAGTA+AGG | - | chr4_2:21131814-21131833 | None:intergenic | 45.0% | |
| !! | TTACTGAGGTAATGGAGGCT+TGG | + | chr4_2:21131813-21131832 | Msa0594080:CDS | 45.0% |
| !!! | TGTTTTTGAGATCGGTTCCG+GGG | + | chr4_2:21131850-21131869 | Msa0594080:CDS | 45.0% |
| !! | TTTTGGGGATTCCAGTTGTG+GGG | + | chr4_2:21131906-21131925 | Msa0594080:CDS | 45.0% |
| TGCTTCACATGCGAAGAGAA+AGG | + | chr4_2:21131985-21132004 | Msa0594080:CDS | 45.0% | |
| TGTGTCAGTGGCTTGATAAG+AGG | + | chr4_2:21132209-21132228 | Msa0594080:CDS | 45.0% | |
| ! | CCCGTGATTGGAAAGCTTTT+TGG | - | chr4_2:21132395-21132414 | None:intergenic | 45.0% |
| ! | ATTAGGGTGCCAACCTAGTT+GGG | + | chr4_2:21132593-21132612 | Msa0594080:intron | 45.0% |
| TACTAGCATCCCAACTAGGT+TGG | - | chr4_2:21132605-21132624 | None:intergenic | 45.0% | |
| CTCACCACATAGGTGTTTGT+TGG | + | chr4_2:21132764-21132783 | Msa0594080:intron | 45.0% | |
| ! | ACGGGGTACTTCAAGGTTTA+AGG | + | chr4_2:21133723-21133742 | Msa0594080:CDS | 45.0% |
| GTAACTCTCCAGAAGTAGGT+TGG | - | chr4_2:21134131-21134150 | None:intergenic | 45.0% | |
| AAAGCAATGGGGTTACTAGG+TGG | + | chr4_2:21134168-21134187 | Msa0594080:CDS | 45.0% | |
| TAGGTGGCAACGAGGATAAA+AGG | + | chr4_2:21134184-21134203 | Msa0594080:CDS | 45.0% | |
| AGGTGGCAACGAGGATAAAA+GGG | + | chr4_2:21134185-21134204 | Msa0594080:CDS | 45.0% | |
| ATTGAGAGGTTGACATGAGC+AGG | + | chr4_2:21134519-21134538 | Msa0594080:intron | 45.0% | |
| ACATGAGCAGGTTTCAGATG+TGG | + | chr4_2:21134531-21134550 | Msa0594080:intron | 45.0% | |
| !!! | CGAGGGAAGTTTTGAGAATG+AGG | + | chr4_2:21134600-21134619 | Msa0594080:CDS | 45.0% |
| TCACAAGTGCTCAACCTTGT+GGG | - | chr4_2:21134640-21134659 | None:intergenic | 45.0% | |
| ATCACAAGTGCTCAACCTTG+TGG | - | chr4_2:21134641-21134660 | None:intergenic | 45.0% | |
| ATCAATGCTCGAATTGGAGG+GGG | - | chr4_2:21134716-21134735 | None:intergenic | 45.0% | |
| CATCAATGCTCGAATTGGAG+GGG | - | chr4_2:21134717-21134736 | None:intergenic | 45.0% | |
| CCATCAATGCTCGAATTGGA+GGG | - | chr4_2:21134718-21134737 | None:intergenic | 45.0% | |
| ACCATCAATGCTCGAATTGG+AGG | - | chr4_2:21134719-21134738 | None:intergenic | 45.0% | |
| !! | TCGAGCATTGATGGTGAAGT+AGG | + | chr4_2:21134724-21134743 | Msa0594080:CDS | 45.0% |
| TTGAGCATAGACAAGGAACG+AGG | + | chr4_2:21134802-21134821 | Msa0594080:CDS | 45.0% | |
| GAATGCGGGCAATCTCATAA+CGG | + | chr4_2:21134840-21134859 | Msa0594080:CDS | 45.0% | |
| TTGAGCATAGATGAGGAAGG+AGG | + | chr4_2:21134880-21134899 | Msa0594080:CDS | 45.0% | |
| TTCTTCTCTACCTCCTTCCT+CGG | - | chr4_2:21134893-21134912 | None:intergenic | 45.0% | |
| AGGAAGGAGGTAGAGAAGAA+GGG | + | chr4_2:21134893-21134912 | Msa0594080:CDS | 45.0% | |
| TAGTCAGAGCTGAATGTAGG+GGG | - | chr4_2:21135102-21135121 | None:intergenic | 45.0% | |
| ATTAACAGACCTGACCCAGG+TGG | + | chr4_2:21130286-21130305 | Msa0594080:intron | 50.0% | |
| !! | TTAACCGACTTGGGTTGGTC+TGG | + | chr4_2:21130325-21130344 | Msa0594080:intron | 50.0% |
| ATCACCAGACCAACCCAAGT+CGG | - | chr4_2:21130332-21130351 | None:intergenic | 50.0% | |
| TTCATACGCAACTCTACCGG+TGG | - | chr4_2:21130743-21130762 | None:intergenic | 50.0% | |
| ACCGGTAGAGTTGCGTATGA+AGG | + | chr4_2:21130742-21130761 | Msa0594080:intron | 50.0% | |
| ACCGGTAGAGTTGCGTTATG+AGG | + | chr4_2:21130918-21130937 | Msa0594080:intron | 50.0% | |
| GTTGAGAACTGGGGAATTGC+AGG | + | chr4_2:21131043-21131062 | Msa0594080:intron | 50.0% | |
| GGCCTAAATGTTGAGAGTGG+GGG | + | chr4_2:21131387-21131406 | Msa0594080:intron | 50.0% | |
| CATTTAGTATACTGGGGGGC+AGG | - | chr4_2:21131428-21131447 | None:intergenic | 50.0% | |
| ! | GATTAGGGTGCCAACCTAGT+TGG | + | chr4_2:21132592-21132611 | Msa0594080:intron | 50.0% |
| ! | CTTTCCTCGTGTGTGTCGAT+GGG | + | chr4_2:21133675-21133694 | Msa0594080:CDS | 50.0% |
| GTAAATCTCACCCGAGGCAA+CGG | + | chr4_2:21133704-21133723 | Msa0594080:CDS | 50.0% | |
| TAAATCTCACCCGAGGCAAC+GGG | + | chr4_2:21133705-21133724 | Msa0594080:CDS | 50.0% | |
| !! | GCATTGGCTCCCTGATAACA+TGG | + | chr4_2:21133811-21133830 | Msa0594080:intron | 50.0% |
| TGGAAGCTCCAACCTACTTC+TGG | + | chr4_2:21134120-21134139 | Msa0594080:CDS | 50.0% | |
| TAGTAGAGGACACTCCCACA+AGG | + | chr4_2:21134623-21134642 | Msa0594080:CDS | 50.0% | |
| !! | CCCTCCAATTCGAGCATTGA+TGG | + | chr4_2:21134715-21134734 | Msa0594080:CDS | 50.0% |
| TGCGGGAAATCTCATAACGG+AGG | + | chr4_2:21134921-21134940 | Msa0594080:CDS | 50.0% | |
| TTGAGCATATCCGAGGAAGG+AGG | + | chr4_2:21134958-21134977 | Msa0594080:CDS | 50.0% | |
| GAGGAAGGAGGTAGAGAAGA+AGG | + | chr4_2:21134892-21134911 | Msa0594080:CDS | 50.0% | |
| AGTAGGAAGAGAGCCAGAGT+TGG | + | chr4_2:21135047-21135066 | Msa0594080:CDS | 50.0% | |
| AGCGTTTCAGCAACCAACTC+TGG | - | chr4_2:21135063-21135082 | None:intergenic | 50.0% | |
| CAGTCAGCTGCCCAAAATCA+AGG | - | chr4_2:21135458-21135477 | None:intergenic | 50.0% | |
| TACCGGCGGTTCTGTAGCTT+GGG | - | chr4_2:21130111-21130130 | None:intergenic | 55.0% | |
| !! | GAGGAAGAGAGAAGTACCGG+CGG | - | chr4_2:21130125-21130144 | None:intergenic | 55.0% |
| ! | GAGATCGGTTCCGGGGAAAT+TGG | + | chr4_2:21131857-21131876 | Msa0594080:CDS | 55.0% |
| CCATCGACACACACGAGGAA+AGG | - | chr4_2:21133677-21133696 | None:intergenic | 55.0% | |
| CCTTTCCTCGTGTGTGTCGA+TGG | + | chr4_2:21133674-21133693 | Msa0594080:CDS | 55.0% | |
| TGATCCCATCGACACACACG+AGG | - | chr4_2:21133682-21133701 | None:intergenic | 55.0% | |
| AAATCTCACCCGAGGCAACG+GGG | + | chr4_2:21133706-21133725 | Msa0594080:CDS | 55.0% | |
| ! | TTGAAGTACCCCGTTGCCTC+GGG | - | chr4_2:21133717-21133736 | None:intergenic | 55.0% |
| ! | CTTGAAGTACCCCGTTGCCT+CGG | - | chr4_2:21133718-21133737 | None:intergenic | 55.0% |
| GGTTGCTGAAACGCTCATCG+TGG | + | chr4_2:21135068-21135087 | Msa0594080:CDS | 55.0% | |
| TGTAGCTTGGGCGAGACCGA+TGG | - | chr4_2:21130099-21130118 | None:intergenic | 60.0% | |
| ! | GTACCGGCGGTTCTGTAGCT+TGG | - | chr4_2:21130112-21130131 | None:intergenic | 60.0% |
| ! | CGAGGCAACGGGGTACTTCA+AGG | + | chr4_2:21133716-21133735 | Msa0594080:CDS | 60.0% |
| GGGGTTACTAGGTGGCAACG+AGG | + | chr4_2:21134176-21134195 | Msa0594080:CDS | 60.0% | |
| CGCCCAAGCTACAGAACCGC+CGG | + | chr4_2:21130106-21130125 | Msa0594080:CDS | 65.0% | |
| !! | TCCAGTTGTGGGGCACCGTG+TGG | + | chr4_2:21131916-21131935 | Msa0594080:CDS | 65.0% |
| TCCACACGGTGCCCCACAAC+TGG | - | chr4_2:21131920-21131939 | None:intergenic | 65.0% | |
| !! | TGTGGGGCACCGTGTGGAGC+TGG | + | chr4_2:21131922-21131941 | Msa0594080:CDS | 70.0% |
| GCTCCTCCGCCAGCTCCACA+CGG | - | chr4_2:21131934-21131953 | None:intergenic | 70.0% | |
| !! | GGGGCACCGTGTGGAGCTGG+CGG | + | chr4_2:21131925-21131944 | Msa0594080:CDS | 75.0% |
| GCACCGTGTGGAGCTGGCGG+AGG | + | chr4_2:21131928-21131947 | Msa0594080:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 21129945 | 21135516 | 21129945 | ID=Msa0594080;Name=Msa0594080 |
| chr4_2 | mRNA | 21129945 | 21135516 | 21129945 | ID=Msa0594080-mRNA-1;Parent=Msa0594080;Name=Msa0594080-mRNA-1;_AED=0.00;_eAED=0.00;_QI=126|1|0.83|1|1|1|6|71|581 |
| chr4_2 | exon | 21129945 | 21130127 | 21129945 | ID=Msa0594080-mRNA-1:exon:5898;Parent=Msa0594080-mRNA-1 |
| chr4_2 | exon | 21131665 | 21132279 | 21131665 | ID=Msa0594080-mRNA-1:exon:5899;Parent=Msa0594080-mRNA-1 |
| chr4_2 | exon | 21133616 | 21133762 | 21133616 | ID=Msa0594080-mRNA-1:exon:5900;Parent=Msa0594080-mRNA-1 |
| chr4_2 | exon | 21134114 | 21134239 | 21134114 | ID=Msa0594080-mRNA-1:exon:5901;Parent=Msa0594080-mRNA-1 |
| chr4_2 | exon | 21134541 | 21135122 | 21134541 | ID=Msa0594080-mRNA-1:exon:5902;Parent=Msa0594080-mRNA-1 |
| chr4_2 | exon | 21135227 | 21135516 | 21135227 | ID=Msa0594080-mRNA-1:exon:5903;Parent=Msa0594080-mRNA-1 |
| chr4_2 | five_prime_UTR | 21129945 | 21130070 | 21129945 | ID=Msa0594080-mRNA-1:five_prime_utr;Parent=Msa0594080-mRNA-1 |
| chr4_2 | CDS | 21130071 | 21130127 | 21130071 | ID=Msa0594080-mRNA-1:cds;Parent=Msa0594080-mRNA-1 |
| chr4_2 | CDS | 21131665 | 21132279 | 21131665 | ID=Msa0594080-mRNA-1:cds;Parent=Msa0594080-mRNA-1 |
| chr4_2 | CDS | 21133616 | 21133762 | 21133616 | ID=Msa0594080-mRNA-1:cds;Parent=Msa0594080-mRNA-1 |
| chr4_2 | CDS | 21134114 | 21134239 | 21134114 | ID=Msa0594080-mRNA-1:cds;Parent=Msa0594080-mRNA-1 |
| chr4_2 | CDS | 21134541 | 21135122 | 21134541 | ID=Msa0594080-mRNA-1:cds;Parent=Msa0594080-mRNA-1 |
| chr4_2 | CDS | 21135227 | 21135445 | 21135227 | ID=Msa0594080-mRNA-1:cds;Parent=Msa0594080-mRNA-1 |
| chr4_2 | three_prime_UTR | 21135446 | 21135516 | 21135446 | ID=Msa0594080-mRNA-1:three_prime_utr;Parent=Msa0594080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
