Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0641240 | XP_024637107.1 | 95.525 | 581 | 26 | 0 | 1 | 581 | 1 | 581 | 0.0 | 1130 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0641240 | sp|Q9SK32|MAIL1_ARATH | 30.859 | 256 | 156 | 8 | 40 | 276 | 47 | 300 | 3.50e-25 | 112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0641240 | A0A396I1A4 | 95.525 | 581 | 26 | 0 | 1 | 581 | 1 | 581 | 0.0 | 1130 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036870 | Msa0641240 | 0.806057 | 9.897341e-50 | -8.615850e-47 |
| Msa0537930 | Msa0641240 | 0.943747 | 6.880589e-103 | -8.615850e-47 |
| Msa0594080 | Msa0641240 | 0.909630 | 4.606723e-82 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0641240 | MtrunA17_Chr4g0012881 | 95.525 | 581 | 26 | 0 | 1 | 581 | 1 | 581 | 0.0 | 1130 |
| Msa0641240 | MtrunA17_Chr3g0097251 | 28.205 | 234 | 154 | 4 | 39 | 258 | 54 | 287 | 9.94e-23 | 102 |
| Msa0641240 | MtrunA17_Chr6g0451401 | 25.092 | 271 | 160 | 8 | 47 | 277 | 70 | 337 | 2.16e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0641240 | AT2G25010.1 | 30.859 | 256 | 156 | 8 | 40 | 276 | 47 | 300 | 3.56e-26 | 112 |
| Msa0641240 | AT2G04865.2 | 31.330 | 233 | 146 | 5 | 40 | 258 | 49 | 281 | 2.97e-25 | 110 |
| Msa0641240 | AT2G04865.1 | 31.330 | 233 | 146 | 5 | 40 | 258 | 49 | 281 | 2.97e-25 | 110 |
| Msa0641240 | AT1G48120.1 | 26.667 | 255 | 156 | 8 | 64 | 289 | 80 | 332 | 7.17e-18 | 88.6 |
Find 129 sgRNAs with CRISPR-Local
Find 349 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACATGCTATCCTTGATTT+TGG | 0.077076 | 4_3:+41248749 | Msa0641240:exon |
| ATTAGATGCTGCTTTAATTT+TGG | 0.095627 | 4_3:+41245200 | Msa0641240:CDS |
| ATATCTTGATCTTGCAAATT+TGG | 0.144782 | 4_3:-41246954 | None:intergenic |
| GGGAATTTGGATGATGTTTC+TGG | 0.151625 | 4_3:+41245465 | Msa0641240:CDS |
| TATAATATTATCTGTTTGTT+AGG | 0.192368 | 4_3:+41248785 | Msa0641240:three_prime_UTR |
| ACGGGGTACTTCAAGGTTTA+AGG | 0.204094 | 4_3:+41247028 | Msa0641240:CDS |
| TTGATTAACAGGATGATTTA+AGG | 0.204191 | 4_3:+41248521 | Msa0641240:intron |
| GTATATATTTGCAGATAATT+TGG | 0.214541 | 4_3:+41247405 | Msa0641240:intron |
| GAGATCGGTTCTGGGGAAAT+TGG | 0.267157 | 4_3:+41245168 | Msa0641240:CDS |
| AAGCCCGAAAATCTGATTAT+TGG | 0.271274 | 4_3:+41248323 | Msa0641240:CDS |
| AAGCAAGGCTTGATTCTATT+GGG | 0.294387 | 4_3:+41245337 | Msa0641240:CDS |
| CTTCAATTTCTTCCATTTGT+TGG | 0.318421 | 4_3:-41248576 | None:intergenic |
| CCGAATAGAAAGAGATATTA+TGG | 0.319624 | 4_3:+41248702 | Msa0641240:CDS |
| AGCCCGAAAATCTGATTATT+GGG | 0.322283 | 4_3:+41248324 | Msa0641240:CDS |
| TGAATCCACTTTCCCATCAT+TGG | 0.324060 | 4_3:-41245424 | None:intergenic |
| TGGAAGCTCCAACCTACTTC+TGG | 0.333647 | 4_3:+41247425 | Msa0641240:CDS |
| TAGGTGGCAACGAGGATAAA+AGG | 0.334124 | 4_3:+41247489 | Msa0641240:CDS |
| GAAGCAAGGCTTGATTCTAT+TGG | 0.348379 | 4_3:+41245336 | Msa0641240:CDS |
| TTAATTGATCGTTAAGTTGT+TGG | 0.353496 | 4_3:+41248919 | Msa0641240:three_prime_UTR |
| CCATAATATCTCTTTCTATT+CGG | 0.354580 | 4_3:-41248702 | None:intergenic |
| TGTTTGTTAGGGGTTGTGTT+AGG | 0.363724 | 4_3:+41248797 | Msa0641240:three_prime_UTR |
| GCTATTTCGCGAACGGGATT+CGG | 0.371178 | 4_3:+41245057 | Msa0641240:CDS |
| CCCTCCAATTCGAGCATTGA+TGG | 0.372854 | 4_3:+41248020 | Msa0641240:CDS |
| TTCACCATCAATGCTCGAAT+TGG | 0.379321 | 4_3:-41248024 | None:intergenic |
| TTTATTCAATTGCATCAGTT+TGG | 0.382994 | 4_3:-41248729 | None:intergenic |
| ATTACCTGGCAAGAATTTCA+TGG | 0.387266 | 4_3:-41248846 | None:intergenic |
| TAAATCTCACCCGAGGCAAC+GGG | 0.387949 | 4_3:+41247010 | Msa0641240:CDS |
| ATAATATTATCTGTTTGTTA+GGG | 0.388782 | 4_3:+41248786 | Msa0641240:three_prime_UTR |
| TGTGGGGCACCGTGTGGAGC+TGG | 0.397933 | 4_3:+41245233 | Msa0641240:CDS |
| TCTGAATTGGAAGAGGAGTA+TGG | 0.398288 | 4_3:+41245273 | Msa0641240:CDS |
| TCCACACGGTGCCCCACAAC+TGG | 0.403268 | 4_3:-41245228 | None:intergenic |
| AAGAAATTTAAATTGCTTTG+CGG | 0.403574 | 4_3:+41248678 | Msa0641240:CDS |
| GTACCGGCGGTTCTGTAGCT+TGG | 0.423668 | 4_3:-41243269 | None:intergenic |
| TTAGGGGTTGTGTTAGGACT+AGG | 0.429515 | 4_3:+41248803 | Msa0641240:three_prime_UTR |
| AGATCTGCTATTTCGCGAAC+GGG | 0.434123 | 4_3:+41245051 | Msa0641240:CDS |
| TCTATCAGAATTTCTTCAAT+CGG | 0.439597 | 4_3:+41243240 | Msa0641240:CDS |
| CGATTTGAAATAATGAAAGT+AGG | 0.442754 | 4_3:-41243163 | None:intergenic |
| TACCGGCGGTTCTGTAGCTT+GGG | 0.446327 | 4_3:-41243268 | None:intergenic |
| GCACCGTGTGGAGCTGGCGG+AGG | 0.448066 | 4_3:+41245239 | Msa0641240:CDS |
| GCTGAAAATAAGCCAACAAA+TGG | 0.448086 | 4_3:+41248564 | Msa0641240:CDS |
| ACCTTGTTAAGAGAATGATT+TGG | 0.455071 | 4_3:-41245096 | None:intergenic |
| CGAGGCAACGGGGTACTTCA+AGG | 0.456523 | 4_3:+41247021 | Msa0641240:CDS |
| CCTTTCCTCGTGTGTGTCGA+TGG | 0.466858 | 4_3:+41246979 | Msa0641240:CDS |
| CATAGTCAGAGCTGAATGTA+GGG | 0.468065 | 4_3:-41248406 | None:intergenic |
| GAGGAAGGAGGTAGAGAAGA+AGG | 0.469014 | 4_3:+41248275 | Msa0641240:CDS |
| ACCATCAATGCTCGAATTGG+AGG | 0.477384 | 4_3:-41248021 | None:intergenic |
| AGAGAAGAAGAGATGAATGC+GGG | 0.477553 | 4_3:+41248209 | Msa0641240:CDS |
| TGAAAGTAGGGAAATGAAAA+CGG | 0.479072 | 4_3:-41243150 | None:intergenic |
| TTGAAGTACCCCGTTGCCTC+GGG | 0.479550 | 4_3:-41247019 | None:intergenic |
| GAAGCGCGTTCAAAGTTTAA+CGG | 0.481367 | 4_3:+41245020 | Msa0641240:CDS |
| TTCTTCCAATGATGGGAAAG+TGG | 0.482670 | 4_3:+41245419 | Msa0641240:CDS |
| CTTGAAGTACCCCGTTGCCT+CGG | 0.482898 | 4_3:-41247020 | None:intergenic |
| TTCTTCTCTACCTCCTTCCT+CGG | 0.486598 | 4_3:-41248273 | None:intergenic |
| GATTTGAAATAATGAAAGTA+GGG | 0.490533 | 4_3:-41243162 | None:intergenic |
| TAAGGATCTACATGACGATC+AGG | 0.492858 | 4_3:+41247046 | Msa0641240:CDS |
| ATTTGTAACTCTCCAGAAGT+AGG | 0.494468 | 4_3:-41247437 | None:intergenic |
| TTACTGAGGTAATGGAGGCT+TGG | 0.496261 | 4_3:+41245124 | Msa0641240:CDS |
| AGCGTTTCAGCAACCAACTC+TGG | 0.497300 | 4_3:-41248365 | None:intergenic |
| TCGAGCATTGATGGTGAAGT+AGG | 0.502854 | 4_3:+41248029 | Msa0641240:CDS |
| CTGATTATTGGGGACAAAGT+AGG | 0.505014 | 4_3:+41248335 | Msa0641240:CDS |
| GTAACTCTCCAGAAGTAGGT+TGG | 0.512066 | 4_3:-41247433 | None:intergenic |
| TGTGTCAGTGGCTTGATAAG+AGG | 0.514005 | 4_3:+41245520 | Msa0641240:CDS |
| CAGTCAGCTGCCCAAAATCA+AGG | 0.516730 | 4_3:-41248760 | None:intergenic |
| ACATAGTCAGAGCTGAATGT+AGG | 0.517491 | 4_3:-41248407 | None:intergenic |
| GTAAATCTCACCCGAGGCAA+CGG | 0.518963 | 4_3:+41247009 | Msa0641240:CDS |
| TTAACAGGATGATTTAAGGA+AGG | 0.522322 | 4_3:+41248525 | Msa0641240:intron |
| TCACAAGTGCTCAACCTTGT+GGG | 0.522508 | 4_3:-41247942 | None:intergenic |
| ATCACAAGTGCTCAACCTTG+TGG | 0.528515 | 4_3:-41247943 | None:intergenic |
| TGATGAGTTGAAGAAAGAGC+TGG | 0.537111 | 4_3:+41248645 | Msa0641240:CDS |
| CTTTCCTCGTGTGTGTCGAT+GGG | 0.543351 | 4_3:+41246980 | Msa0641240:CDS |
| GTCTATGCTCAAATTTGTGA+AGG | 0.545820 | 4_3:-41248096 | None:intergenic |
| TTGAGCATAGATGAGGAAGG+AGG | 0.553551 | 4_3:+41248185 | Msa0641240:CDS |
| AAGCCTCCATTACCTCAGTA+AGG | 0.553879 | 4_3:-41245122 | None:intergenic |
| AGGTGGCAACGAGGATAAAA+GGG | 0.559740 | 4_3:+41247490 | Msa0641240:CDS |
| TAGAGAAGAAGAGATGAATG+CGG | 0.560084 | 4_3:+41248208 | Msa0641240:CDS |
| AGAGAAGAAGAGATGAATGC+GGG | 0.561139 | 4_3:+41248131 | Msa0641240:CDS |
| GAAACCATGAAATTCTTGCC+AGG | 0.562018 | 4_3:+41248842 | Msa0641240:three_prime_UTR |
| CACAAATTTGAGCATAGATG+AGG | 0.563310 | 4_3:+41248178 | Msa0641240:CDS |
| CCATCAATGCTCGAATTGGA+GGG | 0.563743 | 4_3:-41248020 | None:intergenic |
| CGCCCAAGCTACAGAACCGC+CGG | 0.563793 | 4_3:+41243266 | Msa0641240:CDS |
| TCCAAATCATTCTCTTAACA+AGG | 0.567181 | 4_3:+41245095 | Msa0641240:CDS |
| GATAACAATGTGCAGTATGT+TGG | 0.569504 | 4_3:+41245546 | Msa0641240:CDS |
| CACAAATTTGAGCATAGACA+AGG | 0.572292 | 4_3:+41248100 | Msa0641240:CDS |
| GGGGTTGTGTTAGGACTAGG+AGG | 0.572619 | 4_3:+41248806 | Msa0641240:three_prime_UTR |
| GGGGCACCGTGTGGAGCTGG+CGG | 0.574824 | 4_3:+41245236 | Msa0641240:CDS |
| TGTTCGATAAATTCTCTCTA+CGG | 0.575069 | 4_3:-41248603 | None:intergenic |
| TCCAGTTGTGGGGCACCGTG+TGG | 0.576327 | 4_3:+41245227 | Msa0641240:CDS |
| ATCTATGCTCAAATTTGTGA+AGG | 0.576382 | 4_3:-41248174 | None:intergenic |
| TTATTGAAGATTTGTGTCAG+TGG | 0.579200 | 4_3:+41245508 | Msa0641240:CDS |
| TTTCCTTACTGAGGTAATGG+AGG | 0.579719 | 4_3:+41245119 | Msa0641240:CDS |
| CCATCGACACACACGAGGAA+AGG | 0.580239 | 4_3:-41246979 | None:intergenic |
| GATGAACAGTTCTAATTACC+TGG | 0.580455 | 4_3:-41248860 | None:intergenic |
| TGCTTCACATGCGAAGAGAA+AGG | 0.580579 | 4_3:+41245296 | Msa0641240:CDS |
| TAATATTATCTGTTTGTTAG+GGG | 0.585387 | 4_3:+41248787 | Msa0641240:three_prime_UTR |
| GCTCCTCCGCCAGCTCCACA+CGG | 0.591770 | 4_3:-41245242 | None:intergenic |
| AAGATCTGCTATTTCGCGAA+CGG | 0.594961 | 4_3:+41245050 | Msa0641240:CDS |
| CACAAATTTGAGCATATCCG+AGG | 0.597633 | 4_3:+41248256 | Msa0641240:CDS |
| ATCAATGCTCGAATTGGAGG+GGG | 0.600981 | 4_3:-41248018 | None:intergenic |
| AGGAAGGAGGTAGAGAAGAA+GGG | 0.604766 | 4_3:+41248276 | Msa0641240:CDS |
| ACATGAGCAGGTTTCAGATG+TGG | 0.606419 | 4_3:+41247836 | Msa0641240:intron |
| CATCAATGCTCGAATTGGAG+GGG | 0.607072 | 4_3:-41248019 | None:intergenic |
| AGTATCTCTAGTAAGATACA+TGG | 0.611272 | 4_3:+41247876 | Msa0641240:CDS |
| AGCAAGGCTTGATTCTATTG+GGG | 0.619954 | 4_3:+41245338 | Msa0641240:CDS |
| GAATGCGGGCAATCTCATAA+CGG | 0.623936 | 4_3:+41248145 | Msa0641240:CDS |
| TATTGAAAATCTGATAGTAG+AGG | 0.629533 | 4_3:+41247992 | Msa0641240:CDS |
| AACAATGTGCAGTATGTTGG+TGG | 0.629918 | 4_3:+41245549 | Msa0641240:CDS |
| TAGAGAAGAAGAGATGAATG+CGG | 0.629988 | 4_3:+41248130 | Msa0641240:CDS |
| AGTAGGAAGAGAGCCAGAGT+TGG | 0.631049 | 4_3:+41248352 | Msa0641240:CDS |
| GCCCGAAAATCTGATTATTG+GGG | 0.632581 | 4_3:+41248325 | Msa0641240:CDS |
| AAGATACATGGAGAAGACGA+GGG | 0.635295 | 4_3:+41247888 | Msa0641240:CDS |
| CTATGACTACTCTTGAAGCA+AGG | 0.635436 | 4_3:+41245322 | Msa0641240:CDS |
| GGATATGCTCAAATTTGTGA+AGG | 0.646774 | 4_3:-41248252 | None:intergenic |
| TAAGATACATGGAGAAGACG+AGG | 0.646778 | 4_3:+41247887 | Msa0641240:CDS |
| AATTTGAGCATATCCGAGGA+AGG | 0.647829 | 4_3:+41248260 | Msa0641240:CDS |
| TAGTCAGAGCTGAATGTAGG+GGG | 0.650037 | 4_3:-41248404 | None:intergenic |
| TGAGTGAGCTTAAACACTAG+TGG | 0.668228 | 4_3:-41243121 | None:intergenic |
| GAATGCGGGAAATCTCATAA+CGG | 0.673472 | 4_3:+41248223 | Msa0641240:CDS |
| AAAGCAATGGGGTTACTAGG+TGG | 0.677681 | 4_3:+41247473 | Msa0641240:CDS |
| TTGAGCATATCCGAGGAAGG+AGG | 0.679006 | 4_3:+41248263 | Msa0641240:CDS |
| ATAGTCAGAGCTGAATGTAG+GGG | 0.680263 | 4_3:-41248405 | None:intergenic |
| ATCATAGTAAATCTCACCCG+AGG | 0.686338 | 4_3:+41247003 | Msa0641240:CDS |
| TGCGGGAAATCTCATAACGG+AGG | 0.691741 | 4_3:+41248226 | Msa0641240:CDS |
| TAGTAGAGGACACTCCCACA+AGG | 0.691801 | 4_3:+41247928 | Msa0641240:CDS |
| TGATCCCATCGACACACACG+AGG | 0.697389 | 4_3:-41246984 | None:intergenic |
| AATTTGAGCATAGATGAGGA+AGG | 0.700153 | 4_3:+41248182 | Msa0641240:CDS |
| GGTTGCTGAAACGCTCATCG+TGG | 0.712316 | 4_3:+41248373 | Msa0641240:CDS |
| TTGAGCATAGACAAGGAACG+AGG | 0.726610 | 4_3:+41248107 | Msa0641240:CDS |
| AAATCTCACCCGAGGCAACG+GGG | 0.746775 | 4_3:+41247011 | Msa0641240:CDS |
| GGGGTTACTAGGTGGCAACG+AGG | 0.750829 | 4_3:+41247481 | Msa0641240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAACATATATATGATAA+TGG | - | chr4_3:41245648-41245667 | None:intergenic | 10.0% |
| !! | ATTTATTAACAACATAATAA+TGG | + | chr4_3:41246377-41246396 | Msa0641240:intron | 10.0% |
| !!! | TAAAAAATTTAAAACTTGAA+TGG | - | chr4_3:41246490-41246509 | None:intergenic | 10.0% |
| !!! | CTTTATTTTATCATTTGTTA+TGG | + | chr4_3:41244596-41244615 | Msa0641240:intron | 15.0% |
| !!! | ACAAAATTGTTTTAAATTGT+TGG | + | chr4_3:41244801-41244820 | Msa0641240:intron | 15.0% |
| !!! | ATTTTTGTTTTTTCTTTTTC+AGG | + | chr4_3:41244954-41244973 | Msa0641240:intron | 15.0% |
| !!! | ATATGTTTTAATTTATAGAC+AGG | + | chr4_3:41245666-41245685 | Msa0641240:intron | 15.0% |
| !!! | TATGTTTTAATTTATAGACA+GGG | + | chr4_3:41245667-41245686 | Msa0641240:intron | 15.0% |
| !! | AACAAAACATAAATAAATGA+GGG | - | chr4_3:41245843-41245862 | None:intergenic | 15.0% |
| !!! | AATAATGGAAAATCTTTTTA+TGG | + | chr4_3:41246392-41246411 | Msa0641240:intron | 15.0% |
| !!! | AAATTTTTTAACTCTGTATA+TGG | + | chr4_3:41246500-41246519 | Msa0641240:intron | 15.0% |
| !!! | TCTTTCTTTTTAATATTTAG+TGG | + | chr4_3:41246731-41246750 | Msa0641240:intron | 15.0% |
| !!! | TTTTTATTAGTAAAAAGTAC+AGG | + | chr4_3:41246821-41246840 | Msa0641240:intron | 15.0% |
| !! | TTAATTAATCTGAGAATTAA+AGG | - | chr4_3:41247096-41247115 | None:intergenic | 15.0% |
| !! | AACAAAATATAGCATTAAAA+TGG | - | chr4_3:41247179-41247198 | None:intergenic | 15.0% |
| !! | TATAATATTATCTGTTTGTT+AGG | + | chr4_3:41248785-41248804 | Msa0641240:three_prime_UTR | 15.0% |
| !!! | ATAATATTATCTGTTTGTTA+GGG | + | chr4_3:41248786-41248805 | Msa0641240:three_prime_UTR | 15.0% |
| !!! | GATTTGAAATAATGAAAGTA+GGG | - | chr4_3:41243165-41243184 | None:intergenic | 20.0% |
| !! | ATTTAGTTGTTTATTCAAAC+AGG | + | chr4_3:41244678-41244697 | Msa0641240:intron | 20.0% |
| !! | TTTAGTTGTTTATTCAAACA+GGG | + | chr4_3:41244679-41244698 | Msa0641240:intron | 20.0% |
| !! | ACAAAACATAAATAAATGAG+GGG | - | chr4_3:41245842-41245861 | None:intergenic | 20.0% |
| !! | GAACAAAACATAAATAAATG+AGG | - | chr4_3:41245844-41245863 | None:intergenic | 20.0% |
| !!! | CATAAAAACAAGAATCATTT+TGG | + | chr4_3:41246264-41246283 | Msa0641240:intron | 20.0% |
| !! | AATTATTATAGTGTAGTAGT+TGG | + | chr4_3:41246323-41246342 | Msa0641240:intron | 20.0% |
| !! | ATTATTATAGTGTAGTAGTT+GGG | + | chr4_3:41246324-41246343 | Msa0641240:intron | 20.0% |
| !!! | ATTTTATTTTCTACTTGTCT+AGG | + | chr4_3:41246548-41246567 | Msa0641240:intron | 20.0% |
| !! | ATTGATACCAAATCAATAAT+TGG | - | chr4_3:41246590-41246609 | None:intergenic | 20.0% |
| !! | ATTTCAAAGACCAAAAATAT+TGG | - | chr4_3:41247289-41247308 | None:intergenic | 20.0% |
| !!! | ATTTTTGGTCTTTGAAATAA+TGG | + | chr4_3:41247291-41247310 | Msa0641240:intron | 20.0% |
| !! | TATAATATCAAAGCAAGTTA+GGG | - | chr4_3:41247319-41247338 | None:intergenic | 20.0% |
| !! | ATATAATATCAAAGCAAGTT+AGG | - | chr4_3:41247320-41247339 | None:intergenic | 20.0% |
| !! | GTATATATTTGCAGATAATT+TGG | + | chr4_3:41247405-41247424 | Msa0641240:intron | 20.0% |
| !! | AGACATAATAAAAAAAGCAA+TGG | + | chr4_3:41247460-41247479 | Msa0641240:CDS | 20.0% |
| !! | GACATAATAAAAAAAGCAAT+GGG | + | chr4_3:41247461-41247480 | Msa0641240:CDS | 20.0% |
| !! | ACATAATAAAAAAAGCAATG+GGG | + | chr4_3:41247462-41247481 | Msa0641240:CDS | 20.0% |
| !!! | ATATCAATTTTCTACCATTT+TGG | + | chr4_3:41247733-41247752 | Msa0641240:intron | 20.0% |
| !!! | TTCTATAGGAGTTTTATTAT+TGG | + | chr4_3:41247778-41247797 | Msa0641240:intron | 20.0% |
| !!! | ATCATTCTCCTTTTTTAATT+GGG | - | chr4_3:41248629-41248648 | None:intergenic | 20.0% |
| !! | AAGAAATTTAAATTGCTTTG+CGG | + | chr4_3:41248678-41248697 | Msa0641240:CDS | 20.0% |
| !!! | TAATATTATCTGTTTGTTAG+GGG | + | chr4_3:41248787-41248806 | Msa0641240:three_prime_UTR | 20.0% |
| !! | CGATTTGAAATAATGAAAGT+AGG | - | chr4_3:41243166-41243185 | None:intergenic | 25.0% |
| !! | ATTCTGATAGATTTTCTCAT+TGG | - | chr4_3:41243231-41243250 | None:intergenic | 25.0% |
| ! | TCTATCAGAATTTCTTCAAT+CGG | + | chr4_3:41243240-41243259 | Msa0641240:CDS | 25.0% |
| !! | AATTTTACATTTAACCCACT+TGG | + | chr4_3:41243448-41243467 | Msa0641240:intron | 25.0% |
| !! | ATTTTACATTTAACCCACTT+GGG | + | chr4_3:41243449-41243468 | Msa0641240:intron | 25.0% |
| !!! | AATTTTAGTTGAATGTGTCT+CGG | + | chr4_3:41243594-41243613 | Msa0641240:intron | 25.0% |
| !! | AGATGAAAGTGAAATTGTTT+TGG | + | chr4_3:41243733-41243752 | Msa0641240:intron | 25.0% |
| !!! | TGAAATTGGTTTTAGATTGT+TGG | + | chr4_3:41244046-41244065 | Msa0641240:intron | 25.0% |
| ! | TAATTGTAGATTGTAATCAC+CGG | + | chr4_3:41244162-41244181 | Msa0641240:intron | 25.0% |
| !!! | TTTTTTTTGAAAGAGTCTGA+TGG | + | chr4_3:41244270-41244289 | Msa0641240:intron | 25.0% |
| ! | TTTCGACATTTGATATACTT+TGG | - | chr4_3:41244353-41244372 | None:intergenic | 25.0% |
| !!! | TTTGTTTTTTCTTTTTCAGG+CGG | + | chr4_3:41244957-41244976 | Msa0641240:intron | 25.0% |
| !!! | ATTAGATGCTGCTTTAATTT+TGG | + | chr4_3:41245200-41245219 | Msa0641240:CDS | 25.0% |
| !!! | TTAGATGCTGCTTTAATTTT+GGG | + | chr4_3:41245201-41245220 | Msa0641240:CDS | 25.0% |
| ! | TTGGAAAATAACTCGTATTA+CGG | - | chr4_3:41245791-41245810 | None:intergenic | 25.0% |
| ! | CAAAACATAAATAAATGAGG+GGG | - | chr4_3:41245841-41245860 | None:intergenic | 25.0% |
| ! | TAGTGTAAATCTACTATGTT+TGG | - | chr4_3:41246018-41246037 | None:intergenic | 25.0% |
| !!! | GTGTTTTCTTACTTTTGTAT+GGG | + | chr4_3:41246286-41246305 | Msa0641240:intron | 25.0% |
| !! | ATTCATACAGAATCTGATTT+TGG | - | chr4_3:41246359-41246378 | None:intergenic | 25.0% |
| ! | AAAGTTTACATAAACAGACA+AGG | - | chr4_3:41246448-41246467 | None:intergenic | 25.0% |
| !! | TAGTTCTCCAATTATTGATT+TGG | + | chr4_3:41246580-41246599 | Msa0641240:intron | 25.0% |
| ! | AAAATGTCTTAACTGGATTA+AGG | + | chr4_3:41246619-41246638 | Msa0641240:intron | 25.0% |
| ! | TTGCAAATAAAATGTGTGTA+TGG | + | chr4_3:41246756-41246775 | Msa0641240:intron | 25.0% |
| !! | GTTTTTCTTACCCATTTTAT+TGG | + | chr4_3:41246893-41246912 | Msa0641240:intron | 25.0% |
| ! | ATATCTTGATCTTGCAAATT+TGG | - | chr4_3:41246957-41246976 | None:intergenic | 25.0% |
| ! | TTCTCAGATTAATTAAGCAT+TGG | + | chr4_3:41247100-41247119 | Msa0641240:intron | 25.0% |
| ! | ACTTGAAAATGAAAAGTGAA+CGG | - | chr4_3:41247240-41247259 | None:intergenic | 25.0% |
| !!! | TTTTTTGTTTTATGCGTATC+TGG | + | chr4_3:41247576-41247595 | Msa0641240:intron | 25.0% |
| ! | TGACTGGTATATAAAACTTA+AGG | + | chr4_3:41247599-41247618 | Msa0641240:intron | 25.0% |
| ! | GTATATAAAACTTAAGGAGA+GGG | + | chr4_3:41247605-41247624 | Msa0641240:intron | 25.0% |
| ! | TCATTTATTGAACAAATGAC+TGG | - | chr4_3:41247676-41247695 | None:intergenic | 25.0% |
| ! | TTGAAATAGAAGAACCAAAA+TGG | - | chr4_3:41247750-41247769 | None:intergenic | 25.0% |
| ! | TTTCAATGCTATTCTTCTAT+AGG | + | chr4_3:41247764-41247783 | Msa0641240:intron | 25.0% |
| ! | TATTGAAAATCTGATAGTAG+AGG | + | chr4_3:41247992-41248011 | Msa0641240:CDS | 25.0% |
| ! | TTTATTCAGCTCTATATCTT+TGG | + | chr4_3:41248435-41248454 | Msa0641240:intron | 25.0% |
| ! | TTATTCAGCTCTATATCTTT+GGG | + | chr4_3:41248436-41248455 | Msa0641240:intron | 25.0% |
| ! | AAGTAACTTCTTTGATTAAC+AGG | + | chr4_3:41248510-41248529 | Msa0641240:intron | 25.0% |
| ! | TTGATTAACAGGATGATTTA+AGG | + | chr4_3:41248521-41248540 | Msa0641240:intron | 25.0% |
| !!! | CATCATTCTCCTTTTTTAAT+TGG | - | chr4_3:41248630-41248649 | None:intergenic | 25.0% |
| ! | CCATAATATCTCTTTCTATT+CGG | - | chr4_3:41248705-41248724 | None:intergenic | 25.0% |
| ! | TTTATTCAATTGCATCAGTT+TGG | - | chr4_3:41248732-41248751 | None:intergenic | 25.0% |
| !! | TTAATTGATCGTTAAGTTGT+TGG | + | chr4_3:41248919-41248938 | Msa0641240:three_prime_UTR | 25.0% |
| TGAAAGTAGGGAAATGAAAA+CGG | - | chr4_3:41243153-41243172 | None:intergenic | 30.0% | |
| AAAACAAGTAATTGAGAGAG+AGG | - | chr4_3:41243304-41243323 | None:intergenic | 30.0% | |
| TACGTCTATTCAAAATTGAG+CGG | - | chr4_3:41243382-41243401 | None:intergenic | 30.0% | |
| AAATTTCAAAACCACCTAGA+CGG | - | chr4_3:41243433-41243452 | None:intergenic | 30.0% | |
| TCAAACTAACCAACGAAAAT+TGG | - | chr4_3:41243552-41243571 | None:intergenic | 30.0% | |
| !! | ATTAGTGAAGTGTTGAGAAT+TGG | + | chr4_3:41243638-41243657 | Msa0641240:intron | 30.0% |
| CAATCTACAATTGCAATTGA+AGG | - | chr4_3:41244111-41244130 | None:intergenic | 30.0% | |
| ! | CTCAACATTTAGTTTATCTG+AGG | - | chr4_3:41244300-41244319 | None:intergenic | 30.0% |
| ATAAACTAAATGTTGAGAGC+TGG | + | chr4_3:41244303-41244322 | Msa0641240:intron | 30.0% | |
| TAAACTAAATGTTGAGAGCT+GGG | + | chr4_3:41244304-41244323 | Msa0641240:intron | 30.0% | |
| CATTTGATATACTTTGGACA+CGG | - | chr4_3:41244347-41244366 | None:intergenic | 30.0% | |
| TTTGAGAGAACTTATGGAAA+TGG | + | chr4_3:41244446-41244465 | Msa0641240:intron | 30.0% | |
| CTTATAGGCTATAGCTTATA+AGG | + | chr4_3:41244565-41244584 | Msa0641240:intron | 30.0% | |
| TAAGCGCTTATCATATGTAA+GGG | - | chr4_3:41244639-41244658 | None:intergenic | 30.0% | |
| TAGACTGTAACTTAGAACTA+TGG | + | chr4_3:41244879-41244898 | Msa0641240:intron | 30.0% | |
| GAACTATGGCAAAAGAAAAT+TGG | + | chr4_3:41244893-41244912 | Msa0641240:intron | 30.0% | |
| TCCAAATCATTCTCTTAACA+AGG | + | chr4_3:41245095-41245114 | Msa0641240:CDS | 30.0% | |
| ACCTTGTTAAGAGAATGATT+TGG | - | chr4_3:41245099-41245118 | None:intergenic | 30.0% | |
| !!! | TAGATGCTGCTTTAATTTTG+GGG | + | chr4_3:41245202-41245221 | Msa0641240:CDS | 30.0% |
| ! | ATTGTTTTCTGAATTGGAAG+AGG | + | chr4_3:41245266-41245285 | Msa0641240:CDS | 30.0% |
| !! | AGCTTTTTGCTTTTCACAAT+TGG | + | chr4_3:41245387-41245406 | Msa0641240:CDS | 30.0% |
| !! | GCTTTTTGCTTTTCACAATT+GGG | + | chr4_3:41245388-41245407 | Msa0641240:CDS | 30.0% |
| ! | ACTTTTCTTTCTTCCAATGA+TGG | + | chr4_3:41245411-41245430 | Msa0641240:CDS | 30.0% |
| ! | CTTTTCTTTCTTCCAATGAT+GGG | + | chr4_3:41245412-41245431 | Msa0641240:CDS | 30.0% |
| ! | TCAAGATACTTGTCTTTTCT+TGG | + | chr4_3:41245444-41245463 | Msa0641240:CDS | 30.0% |
| ! | CAAGATACTTGTCTTTTCTT+GGG | + | chr4_3:41245445-41245464 | Msa0641240:CDS | 30.0% |
| TTATTGAAGATTTGTGTCAG+TGG | + | chr4_3:41245508-41245527 | Msa0641240:CDS | 30.0% | |
| !! | TTTCCCTTATTTAGGTTGTT+TGG | + | chr4_3:41245727-41245746 | Msa0641240:intron | 30.0% |
| ! | ATGTTCTCCTTGAGTTTTTA+AGG | + | chr4_3:41245754-41245773 | Msa0641240:intron | 30.0% |
| ! | TGTTCTCCTTGAGTTTTTAA+GGG | + | chr4_3:41245755-41245774 | Msa0641240:intron | 30.0% |
| ! | CTGAAGATAGTTATCGATTA+GGG | + | chr4_3:41245888-41245907 | Msa0641240:intron | 30.0% |
| TGAAATAAATCTCACCACAT+AGG | + | chr4_3:41246065-41246084 | Msa0641240:intron | 30.0% | |
| !! | GGTGTTTTCTTACTTTTGTA+TGG | + | chr4_3:41246285-41246304 | Msa0641240:intron | 30.0% |
| ! | TATTTTCTACTTGTCTAGGA+AGG | + | chr4_3:41246552-41246571 | Msa0641240:intron | 30.0% |
| AGTTCACAAAATGTCTTAAC+TGG | + | chr4_3:41246612-41246631 | Msa0641240:intron | 30.0% | |
| ACTGAAAGATTGAATTGACA+TGG | - | chr4_3:41246699-41246718 | None:intergenic | 30.0% | |
| CATGTCTGTTCCAATAAAAT+GGG | - | chr4_3:41246906-41246925 | None:intergenic | 30.0% | |
| ! | CTCAATTTTCCATGTTATCA+GGG | - | chr4_3:41247128-41247147 | None:intergenic | 30.0% |
| ! | TCTCAATTTTCCATGTTATC+AGG | - | chr4_3:41247129-41247148 | None:intergenic | 30.0% |
| GGTATATAAAACTTAAGGAG+AGG | + | chr4_3:41247604-41247623 | Msa0641240:intron | 30.0% | |
| ! | AAGATCAGTGCATTTTATGT+TGG | + | chr4_3:41247640-41247659 | Msa0641240:intron | 30.0% |
| ! | CAATTTCACTATTGATTGAG+AGG | + | chr4_3:41247810-41247829 | Msa0641240:intron | 30.0% |
| AGTATCTCTAGTAAGATACA+TGG | + | chr4_3:41247876-41247895 | Msa0641240:CDS | 30.0% | |
| AGTTGAAAAACTTGTGATTG+AGG | + | chr4_3:41248070-41248089 | Msa0641240:CDS | 30.0% | |
| ATCTATGCTCAAATTTGTGA+AGG | - | chr4_3:41248177-41248196 | None:intergenic | 30.0% | |
| TTAACAGGATGATTTAAGGA+AGG | + | chr4_3:41248525-41248544 | Msa0641240:intron | 30.0% | |
| CTTCAATTTCTTCCATTTGT+TGG | - | chr4_3:41248579-41248598 | None:intergenic | 30.0% | |
| TGTTCGATAAATTCTCTCTA+CGG | - | chr4_3:41248606-41248625 | None:intergenic | 30.0% | |
| ATCGAACACCCAATTAAAAA+AGG | + | chr4_3:41248618-41248637 | Msa0641240:CDS | 30.0% | |
| CCGAATAGAAAGAGATATTA+TGG | + | chr4_3:41248702-41248721 | Msa0641240:CDS | 30.0% | |
| ! | AAACATGCTATCCTTGATTT+TGG | + | chr4_3:41248749-41248768 | Msa0641240:exon | 30.0% |
| ! | AACATGCTATCCTTGATTTT+GGG | + | chr4_3:41248750-41248769 | Msa0641240:exon | 30.0% |
| ! | TCTTCTTTCATTTTCTTCGC+TGG | + | chr4_3:41243192-41243211 | Msa0641240:five_prime_UTR | 35.0% |
| ! | GATTTTCTCATTGGTGAGTT+AGG | - | chr4_3:41243222-41243241 | None:intergenic | 35.0% |
| !!! | CTTGTTTTGTTTCGTGTTTG+CGG | + | chr4_3:41243316-41243335 | Msa0641240:intron | 35.0% |
| TTGAATAGACGTAGCAGATT+TGG | + | chr4_3:41243389-41243408 | Msa0641240:intron | 35.0% | |
| ! | ACTTTGGTGTATACTCTTCT+CGG | + | chr4_3:41243501-41243520 | Msa0641240:intron | 35.0% |
| GTTGAATGTGTCTAACAATG+TGG | + | chr4_3:41243906-41243925 | Msa0641240:intron | 35.0% | |
| !! | AATTCTCCACTTTTCAACAC+TGG | - | chr4_3:41243968-41243987 | None:intergenic | 35.0% |
| ! | AGTGTTGAAAAGTGGAGAAT+TGG | + | chr4_3:41243967-41243986 | Msa0641240:intron | 35.0% |
| TTACGAGACGAAAGTGAAAT+TGG | + | chr4_3:41244032-41244051 | Msa0641240:intron | 35.0% | |
| AAACTAAATGTTGAGAGCTG+GGG | + | chr4_3:41244305-41244324 | Msa0641240:intron | 35.0% | |
| AGACTGTTTGAGAGAACTTA+TGG | + | chr4_3:41244440-41244459 | Msa0641240:intron | 35.0% | |
| AGCTTGTGAAAACTGCTTAT+AGG | + | chr4_3:41244550-41244569 | Msa0641240:intron | 35.0% | |
| GTAAGCGCTTATCATATGTA+AGG | - | chr4_3:41244640-41244659 | None:intergenic | 35.0% | |
| GCGCTTACGATATTTATATG+CGG | + | chr4_3:41244652-41244671 | Msa0641240:intron | 35.0% | |
| TAGTGGCATTTAGTATACTG+GGG | - | chr4_3:41244747-41244766 | None:intergenic | 35.0% | |
| GTAGTGGCATTTAGTATACT+GGG | - | chr4_3:41244748-41244767 | None:intergenic | 35.0% | |
| AGTAGTGGCATTTAGTATAC+TGG | - | chr4_3:41244749-41244768 | None:intergenic | 35.0% | |
| GGTTCATATAGTAACAGTAG+TGG | - | chr4_3:41244764-41244783 | None:intergenic | 35.0% | |
| ACTATATGAACCGTACTTAC+AGG | + | chr4_3:41244772-41244791 | Msa0641240:intron | 35.0% | |
| TTGTGTTCTTCCTGTAAGTA+CGG | - | chr4_3:41244785-41244804 | None:intergenic | 35.0% | |
| ! | TAACAAGGTTTTCCTTACTG+AGG | + | chr4_3:41245110-41245129 | Msa0641240:CDS | 35.0% |
| ! | GGAGCAATTGTTTTCTGAAT+TGG | + | chr4_3:41245260-41245279 | Msa0641240:CDS | 35.0% |
| AAGCAAGGCTTGATTCTATT+GGG | + | chr4_3:41245337-41245356 | Msa0641240:CDS | 35.0% | |
| ! | ATGTGAGTGATGATTTTGTG+AGG | + | chr4_3:41245364-41245383 | Msa0641240:CDS | 35.0% |
| ! | CTTGTCTTTTCTTGGGAATT+TGG | + | chr4_3:41245452-41245471 | Msa0641240:CDS | 35.0% |
| !!! | ATGATGTTTCTGGTTTTGCT+TGG | + | chr4_3:41245475-41245494 | Msa0641240:CDS | 35.0% |
| !!! | TGATGTTTCTGGTTTTGCTT+GGG | + | chr4_3:41245476-41245495 | Msa0641240:CDS | 35.0% |
| GATAACAATGTGCAGTATGT+TGG | + | chr4_3:41245546-41245565 | Msa0641240:CDS | 35.0% | |
| CCACCAAACAACCTAAATAA+GGG | - | chr4_3:41245733-41245752 | None:intergenic | 35.0% | |
| !! | CCTTATTTAGGTTGTTTGGT+GGG | + | chr4_3:41245731-41245750 | Msa0641240:intron | 35.0% |
| AATCCTCCCTTAAAAACTCA+AGG | - | chr4_3:41245764-41245783 | None:intergenic | 35.0% | |
| ATACACCAAACTCATTTGAC+AGG | - | chr4_3:41245817-41245836 | None:intergenic | 35.0% | |
| ! | GCTGAAGATAGTTATCGATT+AGG | + | chr4_3:41245887-41245906 | Msa0641240:intron | 35.0% |
| TATATACTAGCATCCCAACT+AGG | - | chr4_3:41245920-41245939 | None:intergenic | 35.0% | |
| AAGGCATACTATACATAGTC+GGG | - | chr4_3:41246429-41246448 | None:intergenic | 35.0% | |
| CAAGGCATACTATACATAGT+CGG | - | chr4_3:41246430-41246449 | None:intergenic | 35.0% | |
| CCATGTCTGTTCCAATAAAA+TGG | - | chr4_3:41246907-41246926 | None:intergenic | 35.0% | |
| ! | CCATTTTATTGGAACAGACA+TGG | + | chr4_3:41246904-41246923 | Msa0641240:intron | 35.0% |
| !! | ATGAGCATTTTGACATAGCA+CGG | + | chr4_3:41246931-41246950 | Msa0641240:CDS | 35.0% |
| AGAAAAGATGTCTCTCATCA+TGG | + | chr4_3:41247146-41247165 | Msa0641240:intron | 35.0% | |
| ! | GAATCTGCAGCCAATATTTT+TGG | + | chr4_3:41247276-41247295 | Msa0641240:intron | 35.0% |
| GTACTACGATGATAGAAAAG+TGG | + | chr4_3:41247345-41247364 | Msa0641240:intron | 35.0% | |
| ATTTGTAACTCTCCAGAAGT+AGG | - | chr4_3:41247440-41247459 | None:intergenic | 35.0% | |
| AAAAAAGCAATGGGGTTACT+AGG | + | chr4_3:41247470-41247489 | Msa0641240:CDS | 35.0% | |
| !! | TTTTGAGAATGAGGTAGTAG+AGG | + | chr4_3:41247914-41247933 | Msa0641240:CDS | 35.0% |
| TAGAGAAGAAGAGATGAATG+CGG | + | chr4_3:41248130-41248149 | Msa0641240:CDS | 35.0% | |
| CACAAATTTGAGCATAGATG+AGG | + | chr4_3:41248178-41248197 | Msa0641240:CDS | 35.0% | |
| AATTTGAGCATAGATGAGGA+AGG | + | chr4_3:41248182-41248201 | Msa0641240:CDS | 35.0% | |
| TAGAGAAGAAGAGATGAATG+CGG | + | chr4_3:41248130-41248149 | Msa0641240:CDS | 35.0% | |
| GGATATGCTCAAATTTGTGA+AGG | - | chr4_3:41248255-41248274 | None:intergenic | 35.0% | |
| AAGCCCGAAAATCTGATTAT+TGG | + | chr4_3:41248323-41248342 | Msa0641240:CDS | 35.0% | |
| AGCCCGAAAATCTGATTATT+GGG | + | chr4_3:41248324-41248343 | Msa0641240:CDS | 35.0% | |
| ! | TCCCCAATAATCAGATTTTC+GGG | - | chr4_3:41248329-41248348 | None:intergenic | 35.0% |
| ! | GTCCCCAATAATCAGATTTT+CGG | - | chr4_3:41248330-41248349 | None:intergenic | 35.0% |
| CACACAAAATATGTGCACAA+TGG | + | chr4_3:41248476-41248495 | Msa0641240:intron | 35.0% | |
| GCTGAAAATAAGCCAACAAA+TGG | + | chr4_3:41248564-41248583 | Msa0641240:CDS | 35.0% | |
| ATTACCTGGCAAGAATTTCA+TGG | - | chr4_3:41248849-41248868 | None:intergenic | 35.0% | |
| ! | GATGAACAGTTCTAATTACC+TGG | - | chr4_3:41248863-41248882 | None:intergenic | 35.0% |
| TGAGTGAGCTTAAACACTAG+TGG | - | chr4_3:41243124-41243143 | None:intergenic | 40.0% | |
| ! | CGTAGCAGATTTGGTAAAAG+CGG | + | chr4_3:41243398-41243417 | Msa0641240:intron | 40.0% |
| TACATTTAACCCACTTGGGT+TGG | + | chr4_3:41243453-41243472 | Msa0641240:intron | 40.0% | |
| ACATTTAACCCACTTGGGTT+GGG | + | chr4_3:41243454-41243473 | Msa0641240:intron | 40.0% | |
| ! | CTTTGGTGTATACTCTTCTC+GGG | + | chr4_3:41243502-41243521 | Msa0641240:intron | 40.0% |
| TAACCAACGAAAATTGGCAC+TGG | - | chr4_3:41243546-41243565 | None:intergenic | 40.0% | |
| AATTGTAGAGTTGCGCTATG+AGG | + | chr4_3:41243844-41243863 | Msa0641240:intron | 40.0% | |
| !! | GCTATGAGGTTGATGAGATT+TGG | + | chr4_3:41243858-41243877 | Msa0641240:intron | 40.0% |
| ! | ACAAAGCCAGTGTTGAAAAG+TGG | + | chr4_3:41243959-41243978 | Msa0641240:intron | 40.0% |
| ACCTCATAACACAACTCTAC+CGG | - | chr4_3:41244184-41244203 | None:intergenic | 40.0% | |
| AGACATGCTAAGGATCTGTT+TGG | + | chr4_3:41244376-41244395 | Msa0641240:intron | 40.0% | |
| AGCCTGTGAAAACAGCTTAT+AGG | + | chr4_3:41244523-41244542 | Msa0641240:intron | 40.0% | |
| !! | AGCCTATAAGCTGTTTTCAC+AGG | - | chr4_3:41244528-41244547 | None:intergenic | 40.0% |
| TTCTCCCACTCTCAACATTT+AGG | - | chr4_3:41244705-41244724 | None:intergenic | 40.0% | |
| GAAGCGCGTTCAAAGTTTAA+CGG | + | chr4_3:41245020-41245039 | Msa0641240:CDS | 40.0% | |
| !! | AAGATCTGCTATTTCGCGAA+CGG | + | chr4_3:41245050-41245069 | Msa0641240:CDS | 40.0% |
| ! | GGTTTTCCTTACTGAGGTAA+TGG | + | chr4_3:41245116-41245135 | Msa0641240:CDS | 40.0% |
| ! | TTTCCTTACTGAGGTAATGG+AGG | + | chr4_3:41245119-41245138 | Msa0641240:CDS | 40.0% |
| !!! | GAACGACACGTTTTTGAGAT+CGG | + | chr4_3:41245153-41245172 | Msa0641240:CDS | 40.0% |
| !!! | ACGTTTTTGAGATCGGTTCT+GGG | + | chr4_3:41245160-41245179 | Msa0641240:CDS | 40.0% |
| !! | AATTTTGGGGATTCCAGTTG+TGG | + | chr4_3:41245215-41245234 | Msa0641240:CDS | 40.0% |
| !! | ATTTTGGGGATTCCAGTTGT+GGG | + | chr4_3:41245216-41245235 | Msa0641240:CDS | 40.0% |
| TCTGAATTGGAAGAGGAGTA+TGG | + | chr4_3:41245273-41245292 | Msa0641240:CDS | 40.0% | |
| CTATGACTACTCTTGAAGCA+AGG | + | chr4_3:41245322-41245341 | Msa0641240:CDS | 40.0% | |
| GAAGCAAGGCTTGATTCTAT+TGG | + | chr4_3:41245336-41245355 | Msa0641240:CDS | 40.0% | |
| AGCAAGGCTTGATTCTATTG+GGG | + | chr4_3:41245338-41245357 | Msa0641240:CDS | 40.0% | |
| ! | TTCTTCCAATGATGGGAAAG+TGG | + | chr4_3:41245419-41245438 | Msa0641240:CDS | 40.0% |
| TGAATCCACTTTCCCATCAT+TGG | - | chr4_3:41245427-41245446 | None:intergenic | 40.0% | |
| GGGAATTTGGATGATGTTTC+TGG | + | chr4_3:41245465-41245484 | Msa0641240:CDS | 40.0% | |
| !!! | GATGTTTCTGGTTTTGCTTG+GGG | + | chr4_3:41245477-41245496 | Msa0641240:CDS | 40.0% |
| AACAATGTGCAGTATGTTGG+TGG | + | chr4_3:41245549-41245568 | Msa0641240:CDS | 40.0% | |
| GCCAAAAAGCTTTCCAATCA+CGG | + | chr4_3:41245702-41245721 | Msa0641240:intron | 40.0% | |
| CCAAAAAGCTTTCCAATCAC+GGG | + | chr4_3:41245703-41245722 | Msa0641240:intron | 40.0% | |
| AATAAGGGAAATCCCGTGAT+TGG | - | chr4_3:41245718-41245737 | None:intergenic | 40.0% | |
| ! | TCACGGGATTTCCCTTATTT+AGG | + | chr4_3:41245719-41245738 | Msa0641240:intron | 40.0% |
| !! | CCCTTATTTAGGTTGTTTGG+TGG | + | chr4_3:41245730-41245749 | Msa0641240:intron | 40.0% |
| CCCACCAAACAACCTAAATA+AGG | - | chr4_3:41245734-41245753 | None:intergenic | 40.0% | |
| !! | TCTCCTTGAGTTTTTAAGGG+AGG | + | chr4_3:41245758-41245777 | Msa0641240:intron | 40.0% |
| AAACTCATTTGACAGGAGCT+TGG | - | chr4_3:41245810-41245829 | None:intergenic | 40.0% | |
| AAGCTCCTGTCAAATGAGTT+TGG | + | chr4_3:41245809-41245828 | Msa0641240:intron | 40.0% | |
| TTGGGATGCTAGTATATAGC+TGG | + | chr4_3:41245922-41245941 | Msa0641240:intron | 40.0% | |
| TCACCACATAGGTGTTTGTT+GGG | + | chr4_3:41246076-41246095 | Msa0641240:intron | 40.0% | |
| TATCCCAACAAACACCTATG+TGG | - | chr4_3:41246082-41246101 | None:intergenic | 40.0% | |
| CATTCAATCACTTCTCACTG+TGG | - | chr4_3:41246133-41246152 | None:intergenic | 40.0% | |
| ATCATAGTAAATCTCACCCG+AGG | + | chr4_3:41247003-41247022 | Msa0641240:CDS | 40.0% | |
| TAAGGATCTACATGACGATC+AGG | + | chr4_3:41247046-41247065 | Msa0641240:CDS | 40.0% | |
| TACATGACGATCAGGTAACT+TGG | + | chr4_3:41247054-41247073 | Msa0641240:intron | 40.0% | |
| ACATGACGATCAGGTAACTT+GGG | + | chr4_3:41247055-41247074 | Msa0641240:intron | 40.0% | |
| ! | TTTTATGCGTATCTGGTGAC+TGG | + | chr4_3:41247583-41247602 | Msa0641240:intron | 40.0% |
| TAAGATACATGGAGAAGACG+AGG | + | chr4_3:41247887-41247906 | Msa0641240:CDS | 40.0% | |
| AAGATACATGGAGAAGACGA+GGG | + | chr4_3:41247888-41247907 | Msa0641240:CDS | 40.0% | |
| TTCACCATCAATGCTCGAAT+TGG | - | chr4_3:41248027-41248046 | None:intergenic | 40.0% | |
| AGAGAAGAAGAGATGAATGC+GGG | + | chr4_3:41248131-41248150 | Msa0641240:CDS | 40.0% | |
| AGAGAAGAAGAGATGAATGC+GGG | + | chr4_3:41248131-41248150 | Msa0641240:CDS | 40.0% | |
| GAATGCGGGAAATCTCATAA+CGG | + | chr4_3:41248223-41248242 | Msa0641240:CDS | 40.0% | |
| CACAAATTTGAGCATATCCG+AGG | + | chr4_3:41248256-41248275 | Msa0641240:CDS | 40.0% | |
| AATTTGAGCATATCCGAGGA+AGG | + | chr4_3:41248260-41248279 | Msa0641240:CDS | 40.0% | |
| GCCCGAAAATCTGATTATTG+GGG | + | chr4_3:41248325-41248344 | Msa0641240:CDS | 40.0% | |
| CTGATTATTGGGGACAAAGT+AGG | + | chr4_3:41248335-41248354 | Msa0641240:CDS | 40.0% | |
| ATAGTCAGAGCTGAATGTAG+GGG | - | chr4_3:41248408-41248427 | None:intergenic | 40.0% | |
| CATAGTCAGAGCTGAATGTA+GGG | - | chr4_3:41248409-41248428 | None:intergenic | 40.0% | |
| ACATAGTCAGAGCTGAATGT+AGG | - | chr4_3:41248410-41248429 | None:intergenic | 40.0% | |
| ! | TGATGAGTTGAAGAAAGAGC+TGG | + | chr4_3:41248645-41248664 | Msa0641240:CDS | 40.0% |
| ! | TGTTTGTTAGGGGTTGTGTT+AGG | + | chr4_3:41248797-41248816 | Msa0641240:three_prime_UTR | 40.0% |
| GAAACCATGAAATTCTTGCC+AGG | + | chr4_3:41248842-41248861 | Msa0641240:three_prime_UTR | 40.0% | |
| ! | AGAGAGGAAGAGAGAAGTAC+CGG | - | chr4_3:41243288-41243307 | None:intergenic | 45.0% |
| ! | AGCAGATTTGGTAAAAGCGG+CGG | + | chr4_3:41243401-41243420 | Msa0641240:intron | 45.0% |
| ! | TTGGTCTGGTGGTGTTAGTT+TGG | + | chr4_3:41243477-41243496 | Msa0641240:intron | 45.0% |
| ! | TGGTCTGGTGGTGTTAGTTT+GGG | + | chr4_3:41243478-41243497 | Msa0641240:intron | 45.0% |
| ! | GTGGTGTTAGTTTGGGACTT+TGG | + | chr4_3:41243485-41243504 | Msa0641240:intron | 45.0% |
| ! | ACTCCAGTGCCAATTTTCGT+TGG | + | chr4_3:41243540-41243559 | Msa0641240:intron | 45.0% |
| GTCTTTGCTGCTATCATCTG+AGG | + | chr4_3:41244004-41244023 | Msa0641240:intron | 45.0% | |
| ACCGGTAGAGTTGTGTTATG+AGG | + | chr4_3:41244180-41244199 | Msa0641240:intron | 45.0% | |
| GTCGAAACTCAGACATGCTA+AGG | + | chr4_3:41244366-41244385 | Msa0641240:intron | 45.0% | |
| AGGGCCTAAATGTTGAGAGT+GGG | + | chr4_3:41244698-41244717 | Msa0641240:intron | 45.0% | |
| !! | AGATCTGCTATTTCGCGAAC+GGG | + | chr4_3:41245051-41245070 | Msa0641240:CDS | 45.0% |
| AAGCCTCCATTACCTCAGTA+AGG | - | chr4_3:41245125-41245144 | None:intergenic | 45.0% | |
| !! | TTACTGAGGTAATGGAGGCT+TGG | + | chr4_3:41245124-41245143 | Msa0641240:CDS | 45.0% |
| !!! | CACGTTTTTGAGATCGGTTC+TGG | + | chr4_3:41245159-41245178 | Msa0641240:CDS | 45.0% |
| !!! | CGTTTTTGAGATCGGTTCTG+GGG | + | chr4_3:41245161-41245180 | Msa0641240:CDS | 45.0% |
| !! | TTTTGGGGATTCCAGTTGTG+GGG | + | chr4_3:41245217-41245236 | Msa0641240:CDS | 45.0% |
| TGCTTCACATGCGAAGAGAA+AGG | + | chr4_3:41245296-41245315 | Msa0641240:CDS | 45.0% | |
| TGTGTCAGTGGCTTGATAAG+AGG | + | chr4_3:41245520-41245539 | Msa0641240:CDS | 45.0% | |
| ! | CCCGTGATTGGAAAGCTTTT+TGG | - | chr4_3:41245706-41245725 | None:intergenic | 45.0% |
| ! | ATTAGGGTGCCAACCTAGTT+GGG | + | chr4_3:41245904-41245923 | Msa0641240:intron | 45.0% |
| TACTAGCATCCCAACTAGGT+TGG | - | chr4_3:41245916-41245935 | None:intergenic | 45.0% | |
| CTCACCACATAGGTGTTTGT+TGG | + | chr4_3:41246075-41246094 | Msa0641240:intron | 45.0% | |
| ! | ACGGGGTACTTCAAGGTTTA+AGG | + | chr4_3:41247028-41247047 | Msa0641240:CDS | 45.0% |
| GTAACTCTCCAGAAGTAGGT+TGG | - | chr4_3:41247436-41247455 | None:intergenic | 45.0% | |
| AAAGCAATGGGGTTACTAGG+TGG | + | chr4_3:41247473-41247492 | Msa0641240:CDS | 45.0% | |
| TAGGTGGCAACGAGGATAAA+AGG | + | chr4_3:41247489-41247508 | Msa0641240:CDS | 45.0% | |
| AGGTGGCAACGAGGATAAAA+GGG | + | chr4_3:41247490-41247509 | Msa0641240:CDS | 45.0% | |
| ATTGAGAGGTTGACATGAGC+AGG | + | chr4_3:41247824-41247843 | Msa0641240:intron | 45.0% | |
| ACATGAGCAGGTTTCAGATG+TGG | + | chr4_3:41247836-41247855 | Msa0641240:intron | 45.0% | |
| !!! | CGAGGGAAGTTTTGAGAATG+AGG | + | chr4_3:41247905-41247924 | Msa0641240:CDS | 45.0% |
| TCACAAGTGCTCAACCTTGT+GGG | - | chr4_3:41247945-41247964 | None:intergenic | 45.0% | |
| ATCACAAGTGCTCAACCTTG+TGG | - | chr4_3:41247946-41247965 | None:intergenic | 45.0% | |
| ATCAATGCTCGAATTGGAGG+GGG | - | chr4_3:41248021-41248040 | None:intergenic | 45.0% | |
| CATCAATGCTCGAATTGGAG+GGG | - | chr4_3:41248022-41248041 | None:intergenic | 45.0% | |
| CCATCAATGCTCGAATTGGA+GGG | - | chr4_3:41248023-41248042 | None:intergenic | 45.0% | |
| ACCATCAATGCTCGAATTGG+AGG | - | chr4_3:41248024-41248043 | None:intergenic | 45.0% | |
| !! | TCGAGCATTGATGGTGAAGT+AGG | + | chr4_3:41248029-41248048 | Msa0641240:CDS | 45.0% |
| TTGAGCATAGACAAGGAACG+AGG | + | chr4_3:41248107-41248126 | Msa0641240:CDS | 45.0% | |
| GAATGCGGGCAATCTCATAA+CGG | + | chr4_3:41248145-41248164 | Msa0641240:CDS | 45.0% | |
| TTGAGCATAGATGAGGAAGG+AGG | + | chr4_3:41248185-41248204 | Msa0641240:CDS | 45.0% | |
| TTCTTCTCTACCTCCTTCCT+CGG | - | chr4_3:41248198-41248217 | None:intergenic | 45.0% | |
| AGGAAGGAGGTAGAGAAGAA+GGG | + | chr4_3:41248198-41248217 | Msa0641240:CDS | 45.0% | |
| TAGTCAGAGCTGAATGTAGG+GGG | - | chr4_3:41248407-41248426 | None:intergenic | 45.0% | |
| TTAGGGGTTGTGTTAGGACT+AGG | + | chr4_3:41248803-41248822 | Msa0641240:three_prime_UTR | 45.0% | |
| TCAAAACCACCTAGACGGTG+AGG | - | chr4_3:41243428-41243447 | None:intergenic | 50.0% | |
| !! | TTAACCCACTTGGGTTGGGT+TGG | + | chr4_3:41243458-41243477 | Msa0641240:intron | 50.0% |
| GTATACTCTTCTCGGGTCTC+AGG | + | chr4_3:41243509-41243528 | Msa0641240:intron | 50.0% | |
| CAGGGCCTAAATGTTGAGAG+TGG | + | chr4_3:41244697-41244716 | Msa0641240:intron | 50.0% | |
| CATTTAGTATACTGGGGCGC+AGG | - | chr4_3:41244741-41244760 | None:intergenic | 50.0% | |
| ! | GCTATTTCGCGAACGGGATT+CGG | + | chr4_3:41245057-41245076 | Msa0641240:CDS | 50.0% |
| !! | GAGATCGGTTCTGGGGAAAT+TGG | + | chr4_3:41245168-41245187 | Msa0641240:CDS | 50.0% |
| ! | GATTAGGGTGCCAACCTAGT+TGG | + | chr4_3:41245903-41245922 | Msa0641240:intron | 50.0% |
| ! | CTTTCCTCGTGTGTGTCGAT+GGG | + | chr4_3:41246980-41246999 | Msa0641240:CDS | 50.0% |
| GTAAATCTCACCCGAGGCAA+CGG | + | chr4_3:41247009-41247028 | Msa0641240:CDS | 50.0% | |
| TAAATCTCACCCGAGGCAAC+GGG | + | chr4_3:41247010-41247029 | Msa0641240:CDS | 50.0% | |
| !! | GCATTGGCTCCCTGATAACA+TGG | + | chr4_3:41247116-41247135 | Msa0641240:intron | 50.0% |
| TGGAAGCTCCAACCTACTTC+TGG | + | chr4_3:41247425-41247444 | Msa0641240:CDS | 50.0% | |
| TAGTAGAGGACACTCCCACA+AGG | + | chr4_3:41247928-41247947 | Msa0641240:CDS | 50.0% | |
| !! | CCCTCCAATTCGAGCATTGA+TGG | + | chr4_3:41248020-41248039 | Msa0641240:CDS | 50.0% |
| TGCGGGAAATCTCATAACGG+AGG | + | chr4_3:41248226-41248245 | Msa0641240:CDS | 50.0% | |
| TTGAGCATATCCGAGGAAGG+AGG | + | chr4_3:41248263-41248282 | Msa0641240:CDS | 50.0% | |
| GAGGAAGGAGGTAGAGAAGA+AGG | + | chr4_3:41248197-41248216 | Msa0641240:CDS | 50.0% | |
| AGTAGGAAGAGAGCCAGAGT+TGG | + | chr4_3:41248352-41248371 | Msa0641240:CDS | 50.0% | |
| AGCGTTTCAGCAACCAACTC+TGG | - | chr4_3:41248368-41248387 | None:intergenic | 50.0% | |
| CAGTCAGCTGCCCAAAATCA+AGG | - | chr4_3:41248763-41248782 | None:intergenic | 50.0% | |
| TACCGGCGGTTCTGTAGCTT+GGG | - | chr4_3:41243271-41243290 | None:intergenic | 55.0% | |
| !! | GAGGAAGAGAGAAGTACCGG+CGG | - | chr4_3:41243285-41243304 | None:intergenic | 55.0% |
| CAGACCAACCCAACCCAAGT+GGG | - | chr4_3:41243465-41243484 | None:intergenic | 55.0% | |
| GTTGAGAGCTGGGGAATTGC+AGG | + | chr4_3:41244314-41244333 | Msa0641240:intron | 55.0% | |
| CCATCGACACACACGAGGAA+AGG | - | chr4_3:41246982-41247001 | None:intergenic | 55.0% | |
| CCTTTCCTCGTGTGTGTCGA+TGG | + | chr4_3:41246979-41246998 | Msa0641240:CDS | 55.0% | |
| TGATCCCATCGACACACACG+AGG | - | chr4_3:41246987-41247006 | None:intergenic | 55.0% | |
| AAATCTCACCCGAGGCAACG+GGG | + | chr4_3:41247011-41247030 | Msa0641240:CDS | 55.0% | |
| ! | TTGAAGTACCCCGTTGCCTC+GGG | - | chr4_3:41247022-41247041 | None:intergenic | 55.0% |
| ! | CTTGAAGTACCCCGTTGCCT+CGG | - | chr4_3:41247023-41247042 | None:intergenic | 55.0% |
| GGTTGCTGAAACGCTCATCG+TGG | + | chr4_3:41248373-41248392 | Msa0641240:CDS | 55.0% | |
| GGGGTTGTGTTAGGACTAGG+AGG | + | chr4_3:41248806-41248825 | Msa0641240:three_prime_UTR | 55.0% | |
| ! | GTACCGGCGGTTCTGTAGCT+TGG | - | chr4_3:41243272-41243291 | None:intergenic | 60.0% |
| CCAGACCAACCCAACCCAAG+TGG | - | chr4_3:41243466-41243485 | None:intergenic | 60.0% | |
| !! | CCACTTGGGTTGGGTTGGTC+TGG | + | chr4_3:41243463-41243482 | Msa0641240:intron | 60.0% |
| !! | CTTGGGTTGGGTTGGTCTGG+TGG | + | chr4_3:41243466-41243485 | Msa0641240:intron | 60.0% |
| ! | CGAGGCAACGGGGTACTTCA+AGG | + | chr4_3:41247021-41247040 | Msa0641240:CDS | 60.0% |
| GGGGTTACTAGGTGGCAACG+AGG | + | chr4_3:41247481-41247500 | Msa0641240:CDS | 60.0% | |
| CGCCCAAGCTACAGAACCGC+CGG | + | chr4_3:41243266-41243285 | Msa0641240:CDS | 65.0% | |
| !! | TCCAGTTGTGGGGCACCGTG+TGG | + | chr4_3:41245227-41245246 | Msa0641240:CDS | 65.0% |
| TCCACACGGTGCCCCACAAC+TGG | - | chr4_3:41245231-41245250 | None:intergenic | 65.0% | |
| AGCGGCGGTCCTCACCGTCT+AGG | + | chr4_3:41243416-41243435 | Msa0641240:intron | 70.0% | |
| GGCGGTCCTCACCGTCTAGG+TGG | + | chr4_3:41243419-41243438 | Msa0641240:intron | 70.0% | |
| !! | TGTGGGGCACCGTGTGGAGC+TGG | + | chr4_3:41245233-41245252 | Msa0641240:CDS | 70.0% |
| GCTCCTCCGCCAGCTCCACA+CGG | - | chr4_3:41245245-41245264 | None:intergenic | 70.0% | |
| !! | GGGGCACCGTGTGGAGCTGG+CGG | + | chr4_3:41245236-41245255 | Msa0641240:CDS | 75.0% |
| GCACCGTGTGGAGCTGGCGG+AGG | + | chr4_3:41245239-41245258 | Msa0641240:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 41243105 | 41248974 | 41243105 | ID=Msa0641240;Name=Msa0641240 |
| chr4_3 | mRNA | 41243105 | 41248974 | 41243105 | ID=Msa0641240-mRNA-1;Parent=Msa0641240;Name=Msa0641240-mRNA-1;_AED=0.00;_eAED=0.00;_QI=126|1|0.83|1|1|1|6|224|581 |
| chr4_3 | exon | 41243105 | 41243287 | 41243105 | ID=Msa0641240-mRNA-1:exon:9253;Parent=Msa0641240-mRNA-1 |
| chr4_3 | exon | 41244976 | 41245590 | 41244976 | ID=Msa0641240-mRNA-1:exon:9254;Parent=Msa0641240-mRNA-1 |
| chr4_3 | exon | 41246921 | 41247067 | 41246921 | ID=Msa0641240-mRNA-1:exon:9255;Parent=Msa0641240-mRNA-1 |
| chr4_3 | exon | 41247419 | 41247544 | 41247419 | ID=Msa0641240-mRNA-1:exon:9256;Parent=Msa0641240-mRNA-1 |
| chr4_3 | exon | 41247846 | 41248427 | 41247846 | ID=Msa0641240-mRNA-1:exon:9257;Parent=Msa0641240-mRNA-1 |
| chr4_3 | exon | 41248532 | 41248974 | 41248532 | ID=Msa0641240-mRNA-1:exon:9258;Parent=Msa0641240-mRNA-1 |
| chr4_3 | five_prime_UTR | 41243105 | 41243230 | 41243105 | ID=Msa0641240-mRNA-1:five_prime_utr;Parent=Msa0641240-mRNA-1 |
| chr4_3 | CDS | 41243231 | 41243287 | 41243231 | ID=Msa0641240-mRNA-1:cds;Parent=Msa0641240-mRNA-1 |
| chr4_3 | CDS | 41244976 | 41245590 | 41244976 | ID=Msa0641240-mRNA-1:cds;Parent=Msa0641240-mRNA-1 |
| chr4_3 | CDS | 41246921 | 41247067 | 41246921 | ID=Msa0641240-mRNA-1:cds;Parent=Msa0641240-mRNA-1 |
| chr4_3 | CDS | 41247419 | 41247544 | 41247419 | ID=Msa0641240-mRNA-1:cds;Parent=Msa0641240-mRNA-1 |
| chr4_3 | CDS | 41247846 | 41248427 | 41247846 | ID=Msa0641240-mRNA-1:cds;Parent=Msa0641240-mRNA-1 |
| chr4_3 | CDS | 41248532 | 41248750 | 41248532 | ID=Msa0641240-mRNA-1:cds;Parent=Msa0641240-mRNA-1 |
| chr4_3 | three_prime_UTR | 41248751 | 41248974 | 41248751 | ID=Msa0641240-mRNA-1:three_prime_utr;Parent=Msa0641240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
