Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539270 | XP_013454694.1 | 97.417 | 542 | 14 | 0 | 1 | 542 | 1 | 542 | 0.0 | 1101 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539270 | sp|O48652|UVR3_ARATH | 75.370 | 540 | 129 | 2 | 2 | 537 | 13 | 552 | 0.0 | 883 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539270 | A0A072UHW9 | 97.417 | 542 | 14 | 0 | 1 | 542 | 1 | 542 | 0.0 | 1101 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0096020 | Msa0539270 | 0.800682 | 1.284948e-48 | -8.615850e-47 |
| Msa0539270 | Msa0580540 | 0.806671 | 7.344206e-50 | -8.615850e-47 |
| Msa0539270 | Msa0754350 | 0.805741 | 1.153053e-49 | -8.615850e-47 |
| Msa0539270 | Msa1403950 | 0.806807 | 6.873585e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539270 | MtrunA17_Chr4g0003821 | 97.417 | 542 | 14 | 0 | 1 | 542 | 1 | 542 | 0.0 | 1101 |
| Msa0539270 | MtrunA17_Chr1g0167721 | 29.020 | 510 | 322 | 14 | 15 | 506 | 4 | 491 | 3.07e-50 | 182 |
| Msa0539270 | MtrunA17_Chr1g0187801 | 27.872 | 531 | 336 | 18 | 15 | 524 | 6 | 510 | 2.22e-48 | 177 |
| Msa0539270 | MtrunA17_Chr5g0426121 | 26.758 | 512 | 341 | 13 | 8 | 506 | 2 | 492 | 1.37e-42 | 161 |
| Msa0539270 | MtrunA17_Chr3g0138841 | 28.661 | 478 | 301 | 13 | 2 | 454 | 84 | 546 | 8.83e-40 | 152 |
| Msa0539270 | MtrunA17_Chr1g0195451 | 27.147 | 361 | 189 | 11 | 6 | 323 | 111 | 440 | 2.20e-20 | 94.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539270 | AT3G15620.1 | 75.370 | 540 | 129 | 2 | 2 | 537 | 13 | 552 | 0.0 | 883 |
| Msa0539270 | AT3G15620.2 | 76.415 | 424 | 96 | 2 | 2 | 421 | 13 | 436 | 0.0 | 703 |
| Msa0539270 | AT1G04400.1 | 28.287 | 502 | 318 | 14 | 9 | 491 | 1 | 479 | 2.16e-48 | 177 |
| Msa0539270 | AT1G04400.2 | 28.287 | 502 | 318 | 14 | 9 | 491 | 1 | 479 | 2.16e-48 | 177 |
| Msa0539270 | AT5G24850.1 | 30.193 | 467 | 302 | 12 | 4 | 460 | 74 | 526 | 4.70e-43 | 162 |
| Msa0539270 | AT4G08920.1 | 27.451 | 510 | 324 | 16 | 16 | 506 | 15 | 497 | 1.73e-40 | 156 |
| Msa0539270 | AT2G47590.1 | 28.173 | 323 | 204 | 8 | 18 | 323 | 120 | 431 | 4.62e-20 | 93.6 |
Find 172 sgRNAs with CRISPR-Local
Find 359 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACCACCTGTTTCTCTTCT+AGG | 0.128721 | 4_1:+20029059 | Msa0539270:CDS |
| TGTAATGTAGTGCAATTCTT+AGG | 0.188354 | 4_1:+20031766 | Msa0539270:three_prime_UTR |
| TCTTTCATGCTATCGAAATT+TGG | 0.191394 | 4_1:-20029214 | None:intergenic |
| TCGCATTTGATATTTGATTT+TGG | 0.193088 | 4_1:-20026229 | None:intergenic |
| AAAATTCTTGCTTGAGAGTT+TGG | 0.229242 | 4_1:+20026458 | Msa0539270:CDS |
| TAAAGAGTGCAAAAGGAAAA+TGG | 0.230129 | 4_1:+20031402 | Msa0539270:CDS |
| CAGTTTGTCCATTGGGAAAA+AGG | 0.245245 | 4_1:+20029980 | Msa0539270:intron |
| TTCGAGATTGTTGGTTCTTA+AGG | 0.258692 | 4_1:+20026512 | Msa0539270:CDS |
| CTTCCTCCAGTTGGCCCTCT+TGG | 0.268297 | 4_1:+20028346 | Msa0539270:CDS |
| ATATCCAAAGCCTGATAATA+TGG | 0.272900 | 4_1:-20027855 | None:intergenic |
| TCAGATTGGGCAATTAATAA+TGG | 0.275873 | 4_1:+20030034 | Msa0539270:CDS |
| TCGGGTCGGGTTCTATGATA+TGG | 0.283819 | 4_1:+20026277 | Msa0539270:CDS |
| CAATCATTTGTCAAGCTTGC+AGG | 0.296741 | 4_1:+20028286 | Msa0539270:CDS |
| GATTGATGCTATCATGGTTC+AGG | 0.305923 | 4_1:+20029657 | Msa0539270:CDS |
| GAAGGATGATGATAAACTTC+TGG | 0.317197 | 4_1:+20029600 | Msa0539270:CDS |
| TCGATAGCATGAAAGATAAT+AGG | 0.329682 | 4_1:+20029221 | Msa0539270:CDS |
| ACCCTAATGGTGACTATATT+AGG | 0.330749 | 4_1:+20030251 | Msa0539270:CDS |
| TTCTGTGTAGCTACGCCAAT+GGG | 0.337346 | 4_1:+20029821 | Msa0539270:intron |
| TTGAAAAGTGTGTGGCTTAC+AGG | 0.338185 | 4_1:-20028048 | None:intergenic |
| AATGCATTGGTAGAAATATC+TGG | 0.338321 | 4_1:-20029003 | None:intergenic |
| TCCGATTATGCAATTTGCTT+TGG | 0.341822 | 4_1:-20030445 | None:intergenic |
| CATCTTCTTCAATGTCATTC+GGG | 0.353223 | 4_1:+20026259 | Msa0539270:CDS |
| ACCAAAGCAAATTGCATAAT+CGG | 0.361673 | 4_1:+20030444 | Msa0539270:CDS |
| TTTGCTTTGGTCTGGATGCT+TGG | 0.364599 | 4_1:-20030432 | None:intergenic |
| TGCCTAATATAGTCACCATT+AGG | 0.369929 | 4_1:-20030253 | None:intergenic |
| ATTTATTCCCCAACCACATT+TGG | 0.374206 | 4_1:+20030217 | Msa0539270:CDS |
| TCATCTTCTTCAATGTCATT+CGG | 0.375742 | 4_1:+20026258 | Msa0539270:CDS |
| AAATAAAGCACTGAATGGTT+TGG | 0.376019 | 4_1:+20031441 | Msa0539270:CDS |
| ATTGGTTTACTATGCAAGAT+TGG | 0.376604 | 4_1:+20031573 | Msa0539270:three_prime_UTR |
| ATTACAGGACTATGCTCTTA+AGG | 0.380280 | 4_1:+20028005 | Msa0539270:intron |
| GATGTTAATCTTAAGAAGAT+TGG | 0.380989 | 4_1:+20026489 | Msa0539270:CDS |
| AAATTCTTGCTTGAGAGTTT+GGG | 0.384882 | 4_1:+20026459 | Msa0539270:CDS |
| TATGGTTTCGAAAGGGTATT+CGG | 0.388661 | 4_1:+20026295 | Msa0539270:CDS |
| GGTGATAAAATAGTTGTTGC+TGG | 0.390371 | 4_1:-20028830 | None:intergenic |
| GGCTTCTGATTGATTCAGAT+TGG | 0.392521 | 4_1:+20030020 | Msa0539270:CDS |
| ACTTCTTACCAAATGTGGTT+GGG | 0.395254 | 4_1:-20030225 | None:intergenic |
| TCGAGATTGTTGGTTCTTAA+GGG | 0.401778 | 4_1:+20026513 | Msa0539270:CDS |
| TTATGCAATTTGCTTTGGTC+TGG | 0.403118 | 4_1:-20030440 | None:intergenic |
| GAACCGGGTGAGAAAGCATT+TGG | 0.406999 | 4_1:-20026411 | None:intergenic |
| TCTGATTCACCGCCTTTGAA+TGG | 0.407367 | 4_1:-20028505 | None:intergenic |
| GAACTAAATCTAAAAGATCT+AGG | 0.409537 | 4_1:+20031521 | Msa0539270:CDS |
| CTAGCAGCTGTTATCATGTA+AGG | 0.409670 | 4_1:+20031707 | Msa0539270:three_prime_UTR |
| GGGCAATTAATAATGGAAAC+TGG | 0.413172 | 4_1:+20030041 | Msa0539270:CDS |
| ATTATGGCAGTTTGTCCATT+GGG | 0.413466 | 4_1:+20029973 | Msa0539270:intron |
| TCCTTGGATTGATGCTATCA+TGG | 0.413684 | 4_1:+20029651 | Msa0539270:CDS |
| GCCTAATATAGTCACCATTA+GGG | 0.423398 | 4_1:-20030252 | None:intergenic |
| TACTAGTATCCTAGACTTGT+AGG | 0.424372 | 4_1:+20031664 | Msa0539270:three_prime_UTR |
| AAAGAGTGCAAAAGGAAAAT+GGG | 0.424958 | 4_1:+20031403 | Msa0539270:CDS |
| GGATCCATATTATCAGGCTT+TGG | 0.425788 | 4_1:+20027851 | Msa0539270:CDS |
| CAGACCCGCACGAGATGAAC+CGG | 0.426269 | 4_1:-20026427 | None:intergenic |
| GAAGATTGGTTCGAGATTGT+TGG | 0.428676 | 4_1:+20026503 | Msa0539270:CDS |
| CATCTCGTGCGGGTCTGAAC+CGG | 0.430238 | 4_1:+20026433 | Msa0539270:CDS |
| GCGCGCGTTATGAAATGAAA+TGG | 0.431687 | 4_1:-20026180 | None:intergenic |
| TGACACGGATCCATATTATC+AGG | 0.435040 | 4_1:+20027845 | Msa0539270:CDS |
| TTCTTCAATGTCATTCGGGT+CGG | 0.435226 | 4_1:+20026263 | Msa0539270:CDS |
| ATGCTAAGACAGGATTTCCT+TGG | 0.439686 | 4_1:+20029635 | Msa0539270:CDS |
| CAACTTCCAAGAGGGCCAAC+TGG | 0.441301 | 4_1:-20028352 | None:intergenic |
| ACCTGTCCTAGAAGAGAAAC+AGG | 0.442561 | 4_1:-20029065 | None:intergenic |
| TCTTCAATGTCATTCGGGTC+GGG | 0.442839 | 4_1:+20026264 | Msa0539270:CDS |
| ATCAGAAGCATTGAAGAGAT+TGG | 0.445221 | 4_1:+20028522 | Msa0539270:CDS |
| TATCCAAGGTCTTTGATTGT+TGG | 0.447004 | 4_1:-20028391 | None:intergenic |
| GTAATGTAGTGCAATTCTTA+GGG | 0.452180 | 4_1:+20031767 | Msa0539270:three_prime_UTR |
| CACTACATTATATACATGTC+TGG | 0.452616 | 4_1:-20031630 | None:intergenic |
| ATGATAAACTTCTGGAGGCT+TGG | 0.453571 | 4_1:+20029608 | Msa0539270:CDS |
| TGCTCTTAAGGCAGGAATTG+AGG | 0.458436 | 4_1:+20028017 | Msa0539270:CDS |
| GCTTCTGATTGATTCAGATT+GGG | 0.460699 | 4_1:+20030021 | Msa0539270:CDS |
| TGTGACACTAACATTAGTTA+TGG | 0.461931 | 4_1:-20031806 | None:intergenic |
| GGTTGTGTCTAACGTGCGCT+AGG | 0.463087 | 4_1:-20026146 | None:intergenic |
| GCTTTGGTCTGGATGCTTGG+AGG | 0.467199 | 4_1:-20030429 | None:intergenic |
| TATATACATCTTGAATGCAT+TGG | 0.472931 | 4_1:-20029016 | None:intergenic |
| TGGATATGAAGATGATCAAC+TGG | 0.474594 | 4_1:+20028408 | Msa0539270:CDS |
| GGTGAGAAAGCATTTGGATC+GGG | 0.475581 | 4_1:-20026405 | None:intergenic |
| CGTGTGGCATATTCTAGTGC+CGG | 0.477171 | 4_1:-20026330 | None:intergenic |
| ACCTTCTGTATAATATCTGT+TGG | 0.477382 | 4_1:-20028072 | None:intergenic |
| AAATGCAGATGGATTACCCT+TGG | 0.480990 | 4_1:-20028801 | None:intergenic |
| TATTATGGCAGTTTGTCCAT+TGG | 0.481926 | 4_1:+20029972 | Msa0539270:intron |
| CTGCAAGTAAAGAGTGCAAA+AGG | 0.483445 | 4_1:+20031395 | Msa0539270:CDS |
| CAGGAGTTCTCTCCATTCAA+AGG | 0.485802 | 4_1:+20028493 | Msa0539270:intron |
| CTTCTTACCAAATGTGGTTG+GGG | 0.488497 | 4_1:-20030224 | None:intergenic |
| ATCCTAGTGAAGTTCTTGTT+CGG | 0.488611 | 4_1:+20026538 | Msa0539270:CDS |
| ACAGGTGGTGAAGTATGCTT+TGG | 0.492467 | 4_1:-20029047 | None:intergenic |
| GGTGTAGGTTGTTGAATTAG+AGG | 0.493086 | 4_1:-20026122 | None:intergenic |
| TATTCTTCACTTCCTCCAGT+TGG | 0.493577 | 4_1:+20028337 | Msa0539270:CDS |
| TTTCTGTGTAGCTACGCCAA+TGG | 0.494347 | 4_1:+20029820 | Msa0539270:intron |
| GCATTAAATAAAGCACTGAA+TGG | 0.494825 | 4_1:+20031436 | Msa0539270:CDS |
| TACTTCTTACCAAATGTGGT+TGG | 0.495822 | 4_1:-20030226 | None:intergenic |
| CAGTGCTTTATTTAATGCAT+AGG | 0.496811 | 4_1:-20031431 | None:intergenic |
| AGATCTAGGCAGCTACTGAT+TGG | 0.498107 | 4_1:+20031535 | Msa0539270:CDS |
| TTCTATGATATGGTTTCGAA+AGG | 0.499125 | 4_1:+20026287 | Msa0539270:CDS |
| TATGAAATGAAATGGATAAG+AGG | 0.502332 | 4_1:-20026172 | None:intergenic |
| AATGCAGATGGATTACCCTT+GGG | 0.502399 | 4_1:-20028800 | None:intergenic |
| GGTTCATAGATGTACGCCTT+GGG | 0.502564 | 4_1:-20030396 | None:intergenic |
| ACCTGTTTCTCTTCTAGGAC+AGG | 0.505192 | 4_1:+20029064 | Msa0539270:CDS |
| TGGAGGAAGTGAAGAATACT+TGG | 0.505816 | 4_1:-20028332 | None:intergenic |
| TAATTTGTAGATTCCTTGGA+AGG | 0.508647 | 4_1:+20029582 | Msa0539270:intron |
| TACTTGGTTGCGAGAGGAGA+TGG | 0.509027 | 4_1:-20028316 | None:intergenic |
| TCTTGTTCGGTGCTTGAAAG+AGG | 0.510715 | 4_1:+20026551 | Msa0539270:CDS |
| GATCCAAATGCTTTCTCACC+CGG | 0.518237 | 4_1:+20026408 | Msa0539270:CDS |
| AAGTTACCTCCTACAAGTCT+AGG | 0.518237 | 4_1:-20031673 | None:intergenic |
| GGTAAGAAGTATGACCCTAA+TGG | 0.536746 | 4_1:+20030238 | Msa0539270:CDS |
| GTTGTGTCTAACGTGCGCTA+GGG | 0.538008 | 4_1:-20026145 | None:intergenic |
| GGCTTTGGATATTAAAGTCA+AGG | 0.538649 | 4_1:+20027866 | Msa0539270:CDS |
| CAGGACTATGCTCTTAAGGC+AGG | 0.540027 | 4_1:+20028009 | Msa0539270:intron |
| TGTAGCTACGCCAATGGGGT+TGG | 0.542436 | 4_1:+20029826 | Msa0539270:intron |
| TTGAGGAGGAAATTGGATGA+GGG | 0.544395 | 4_1:+20031487 | Msa0539270:CDS |
| GTTCCAACAATCAAAGACCT+TGG | 0.544596 | 4_1:+20028388 | Msa0539270:CDS |
| GTCATACTTCTTACCAAATG+TGG | 0.546595 | 4_1:-20030230 | None:intergenic |
| TTAATAATGGAAACTGGATG+TGG | 0.548012 | 4_1:+20030047 | Msa0539270:CDS |
| CTCACCCGGTTCATCTCGTG+CGG | 0.548117 | 4_1:+20026422 | Msa0539270:CDS |
| GGATCGGGTTTCATGTAATG+CGG | 0.548499 | 4_1:-20026390 | None:intergenic |
| GTGTGGCATATTCTAGTGCC+GGG | 0.548705 | 4_1:-20026329 | None:intergenic |
| GGAAAAGACTATCCAATGCC+AGG | 0.548983 | 4_1:+20030465 | Msa0539270:CDS |
| TGACAGCACTAACCTGGCAT+TGG | 0.551297 | 4_1:-20030477 | None:intergenic |
| GATCGGGTTTCATGTAATGC+GGG | 0.551308 | 4_1:-20026389 | None:intergenic |
| GCTTGGAGAGATGCTAAGAC+AGG | 0.556089 | 4_1:+20029625 | Msa0539270:CDS |
| ATGATAACAGCTGCTAGAAA+CGG | 0.557912 | 4_1:-20031701 | None:intergenic |
| CTTGAGGAGGAAATTGGATG+AGG | 0.559387 | 4_1:+20031486 | Msa0539270:CDS |
| ATTCTAGTGCCGGGTTATCG+TGG | 0.560671 | 4_1:-20026320 | None:intergenic |
| GTGTAGGTTGTTGAATTAGA+GGG | 0.561037 | 4_1:-20026121 | None:intergenic |
| TCACCCGGTTCATCTCGTGC+GGG | 0.562200 | 4_1:+20026423 | Msa0539270:CDS |
| TAGGTTGTTGAATTAGAGGG+TGG | 0.568757 | 4_1:-20026118 | None:intergenic |
| TCTATGATATGGTTTCGAAA+GGG | 0.569661 | 4_1:+20026288 | Msa0539270:CDS |
| GTTGACATGTGCAGTTGTTG+TGG | 0.571415 | 4_1:+20029158 | Msa0539270:intron |
| GGGTGAGAAAGCATTTGGAT+CGG | 0.572585 | 4_1:-20026406 | None:intergenic |
| AGATAATAGGATATGCAAGC+AGG | 0.576196 | 4_1:+20029234 | Msa0539270:CDS |
| GTTGATCATCTTCATATCCA+AGG | 0.577382 | 4_1:-20028405 | None:intergenic |
| TCCAACAGATATTATACAGA+AGG | 0.577907 | 4_1:+20028071 | Msa0539270:CDS |
| AGTTTATCATCATCCTTCCA+AGG | 0.579499 | 4_1:-20029595 | None:intergenic |
| TTTATGATTTCAGCTGTGGG+TGG | 0.579968 | 4_1:+20028763 | Msa0539270:intron |
| AATGATGCATCCAACCCCAT+TGG | 0.588094 | 4_1:-20029836 | None:intergenic |
| TTGTGTCTAACGTGCGCTAG+GGG | 0.588571 | 4_1:-20026144 | None:intergenic |
| TATTCGGATCCACGATAACC+CGG | 0.592834 | 4_1:+20026311 | Msa0539270:CDS |
| GTGCAAAAGGAAAATGGGTG+AGG | 0.603124 | 4_1:+20031408 | Msa0539270:CDS |
| TGGTTGATGCAGTGGAACAT+TGG | 0.607215 | 4_1:+20027804 | Msa0539270:intron |
| AGGTTGTTGAATTAGAGGGT+GGG | 0.607311 | 4_1:-20026117 | None:intergenic |
| TGGTTCATAGATGTACGCCT+TGG | 0.611173 | 4_1:-20030397 | None:intergenic |
| GAAGAATACTTGGTTGCGAG+AGG | 0.611496 | 4_1:-20028322 | None:intergenic |
| CACCGAACAAGAACTTCACT+AGG | 0.613108 | 4_1:-20026540 | None:intergenic |
| ACAAATGATTGATAACTAAG+TGG | 0.614959 | 4_1:-20028274 | None:intergenic |
| ATGCTTGGAGGAGATGTCCA+TGG | 0.615547 | 4_1:-20030417 | None:intergenic |
| AGGCAGCTACTGATTGGCTG+AGG | 0.616827 | 4_1:+20031541 | Msa0539270:CDS |
| ACTAATGTTAGTGTCACATA+CGG | 0.616906 | 4_1:+20031811 | Msa0539270:three_prime_UTR |
| GGATGATGATAAACTTCTGG+AGG | 0.617128 | 4_1:+20029603 | Msa0539270:CDS |
| CTTATGCCAAATCAGAATGG+AGG | 0.619181 | 4_1:+20028244 | Msa0539270:intron |
| TTGGATGAGGGTGAAGAACA+AGG | 0.623875 | 4_1:+20031499 | Msa0539270:CDS |
| AAGGACGTGACGTCTTTGAG+AGG | 0.624757 | 4_1:+20029999 | Msa0539270:CDS |
| AAGATTAGAACAACCTCGTG+TGG | 0.625250 | 4_1:-20026346 | None:intergenic |
| GGCAAACTTTGAGAAACCCA+AGG | 0.630145 | 4_1:+20028784 | Msa0539270:CDS |
| TTATGCCAAATCAGAATGGA+GGG | 0.637975 | 4_1:+20028245 | Msa0539270:intron |
| CTTCCAAGAGGGCCAACTGG+AGG | 0.640637 | 4_1:-20028349 | None:intergenic |
| ACCATGATAGCATCAATCCA+AGG | 0.643628 | 4_1:-20029652 | None:intergenic |
| AGACCCGCACGAGATGAACC+GGG | 0.646851 | 4_1:-20026426 | None:intergenic |
| TGCACTACATTACAAGAGTG+AGG | 0.649412 | 4_1:-20031757 | None:intergenic |
| GGAAGAATGCATGAAAGACA+AGG | 0.657750 | 4_1:+20028543 | Msa0539270:CDS |
| AAACATCGCAACTTCCAAGA+GGG | 0.658237 | 4_1:-20028360 | None:intergenic |
| TGTGTCTAACGTGCGCTAGG+GGG | 0.658337 | 4_1:-20026143 | None:intergenic |
| GCTGGCTTAAGAAATGCAGA+TGG | 0.665052 | 4_1:-20028812 | None:intergenic |
| AGGCGTACATCTATGAACCA+TGG | 0.666093 | 4_1:+20030400 | Msa0539270:CDS |
| AATGATTGATAACTAAGTGG+CGG | 0.666662 | 4_1:-20028271 | None:intergenic |
| TAGTATCCTAGACTTGTAGG+AGG | 0.677488 | 4_1:+20031667 | Msa0539270:three_prime_UTR |
| TTGGTTGCGAGAGGAGATGG+CGG | 0.677537 | 4_1:-20028313 | None:intergenic |
| GTTATGCTTTGAGTATGACA+CGG | 0.684108 | 4_1:+20027830 | Msa0539270:CDS |
| TGGTTGAGCAGATATGCCCA+AGG | 0.686756 | 4_1:+20030380 | Msa0539270:intron |
| GAAACATCGCAACTTCCAAG+AGG | 0.694042 | 4_1:-20028361 | None:intergenic |
| CTGTTGGATTGAAAAGTGTG+TGG | 0.694593 | 4_1:-20028056 | None:intergenic |
| GCAAACTTTGAGAAACCCAA+GGG | 0.697908 | 4_1:+20028785 | Msa0539270:CDS |
| ACATACGGCACACTATCACA+CGG | 0.708235 | 4_1:+20031826 | Msa0539270:three_prime_UTR |
| GAGTTCTCTCCATTCAAAGG+CGG | 0.708477 | 4_1:+20028496 | Msa0539270:CDS |
| TCTGTGTAGCTACGCCAATG+GGG | 0.714485 | 4_1:+20029822 | Msa0539270:intron |
| AATGAAATGGATAAGAGGTG+TGG | 0.739456 | 4_1:-20026167 | None:intergenic |
| GCACTAGAATATGCCACACG+AGG | 0.744664 | 4_1:+20026333 | Msa0539270:CDS |
| TGTCCTAGAAGAGAAACAGG+TGG | 0.757621 | 4_1:-20029062 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAAAAATTAAAAAAA+TGG | - | chr4_1:20029956-20029975 | None:intergenic | 0.0% |
| !!! | TTTTTTAATTTTTTTTATTA+TGG | + | chr4_1:20029957-20029976 | Msa0539270:intron | 0.0% |
| !! | AAAACAAAAATTAGTTAAAT+CGG | - | chr4_1:20028125-20028144 | None:intergenic | 10.0% |
| !! | TAAAAAAATTAAAATCTGTA+AGG | + | chr4_1:20028586-20028605 | Msa0539270:intron | 10.0% |
| !! | AAAAAATTAAAAAAATGGTA+TGG | - | chr4_1:20029951-20029970 | None:intergenic | 10.0% |
| !!! | ACAACATTCAAATTTATTTT+TGG | - | chr4_1:20026579-20026598 | None:intergenic | 15.0% |
| !!! | TGATTTTTATTGGTATTTTT+TGG | + | chr4_1:20027016-20027035 | Msa0539270:intron | 15.0% |
| !!! | GATTTTTATTGGTATTTTTT+GGG | + | chr4_1:20027017-20027036 | Msa0539270:intron | 15.0% |
| !!! | ATATTTTATTACTCTTAGTT+TGG | + | chr4_1:20027395-20027414 | Msa0539270:intron | 15.0% |
| !! | TTTGTTAGTAAAATGTAAAA+TGG | - | chr4_1:20027652-20027671 | None:intergenic | 15.0% |
| !!! | ATTAATTCTGTTACTTTTTT+TGG | + | chr4_1:20027735-20027754 | Msa0539270:intron | 15.0% |
| !! | TAAAAAAAGAAAAGAAATGA+AGG | - | chr4_1:20028747-20028766 | None:intergenic | 15.0% |
| !! | AAATATATAAGAGAAACTTA+AGG | - | chr4_1:20028941-20028960 | None:intergenic | 15.0% |
| !!! | TTGCTTTATTTGAAAAAAAA+AGG | - | chr4_1:20029698-20029717 | None:intergenic | 15.0% |
| !!! | AATTGTTTTAAGTGTTTGTT+TGG | + | chr4_1:20026644-20026663 | Msa0539270:intron | 20.0% |
| !!! | AATTTAAAACCACTAATGTT+AGG | - | chr4_1:20026826-20026845 | None:intergenic | 20.0% |
| !!! | AAACTGTTTTTGATAGTTTA+TGG | + | chr4_1:20026926-20026945 | Msa0539270:intron | 20.0% |
| !!! | AAACAAAACGTGATTTTTAT+TGG | + | chr4_1:20027006-20027025 | Msa0539270:intron | 20.0% |
| !! | ATCAAATTTGACATATAAGT+TGG | + | chr4_1:20027308-20027327 | Msa0539270:intron | 20.0% |
| !!! | GAGATTTTATAATAAGTTGA+AGG | + | chr4_1:20027959-20027978 | Msa0539270:intron | 20.0% |
| !!! | ATTTTTGTTTTGGTTATTAC+AGG | + | chr4_1:20027990-20028009 | Msa0539270:intron | 20.0% |
| !! | ACAAATTGATCATGAATTAA+TGG | - | chr4_1:20028211-20028230 | None:intergenic | 20.0% |
| !! | TTCAAGATTAATAATCCTTT+AGG | + | chr4_1:20028445-20028464 | Msa0539270:intron | 20.0% |
| !! | TGAAATTTACTTCTCTAATT+AGG | - | chr4_1:20028475-20028494 | None:intergenic | 20.0% |
| !! | TAATTAGAGAAGTAAATTTC+AGG | + | chr4_1:20028474-20028493 | Msa0539270:intron | 20.0% |
| !! | AAGAAATAGATGTTATCATT+TGG | + | chr4_1:20029291-20029310 | Msa0539270:intron | 20.0% |
| !! | AATAGTCAATAATGATTACA+AGG | - | chr4_1:20029470-20029489 | None:intergenic | 20.0% |
| !!! | CATTATTGACTATTACTATT+TGG | + | chr4_1:20029476-20029495 | Msa0539270:intron | 20.0% |
| !!! | TATATGTTTGCTTTTAACAA+AGG | - | chr4_1:20029520-20029539 | None:intergenic | 20.0% |
| !!! | ATTTTAATTTGTAGATTCCT+TGG | + | chr4_1:20029578-20029597 | Msa0539270:intron | 20.0% |
| !! | TCAAATAAAGCAATTATAGA+TGG | + | chr4_1:20029705-20029724 | Msa0539270:intron | 20.0% |
| !! | CAAATAAAGCAATTATAGAT+GGG | + | chr4_1:20029706-20029725 | Msa0539270:intron | 20.0% |
| !!! | TAAAATTACCTTTTAAGACT+GGG | - | chr4_1:20030285-20030304 | None:intergenic | 20.0% |
| !!! | TTAAAATTACCTTTTAAGAC+TGG | - | chr4_1:20030286-20030305 | None:intergenic | 20.0% |
| !!! | TTATCTTCTTACTTTAAAAC+CGG | - | chr4_1:20030524-20030543 | None:intergenic | 20.0% |
| !! | TTTCTATTATGCAATGAATT+AGG | + | chr4_1:20030606-20030625 | Msa0539270:intron | 20.0% |
| !! | GTCTTAATAATATGTTCTAA+AGG | - | chr4_1:20031062-20031081 | None:intergenic | 20.0% |
| !!! | TAATCATAAGTATTGCATAA+TGG | + | chr4_1:20031135-20031154 | Msa0539270:intron | 20.0% |
| ! | TATGAAATGAAATGGATAAG+AGG | - | chr4_1:20026175-20026194 | None:intergenic | 25.0% |
| !!! | TCGCATTTGATATTTGATTT+TGG | - | chr4_1:20026232-20026251 | None:intergenic | 25.0% |
| ! | GATGTTAATCTTAAGAAGAT+TGG | + | chr4_1:20026489-20026508 | Msa0539270:CDS | 25.0% |
| !! | CTCAAATAATCTCTAAGAAA+GGG | - | chr4_1:20026712-20026731 | None:intergenic | 25.0% |
| !! | ACTCAAATAATCTCTAAGAA+AGG | - | chr4_1:20026713-20026732 | None:intergenic | 25.0% |
| !!! | CATTAAAGTTTTGTCCATAA+AGG | - | chr4_1:20026959-20026978 | None:intergenic | 25.0% |
| ! | TGGTATAGATTTATCAACTT+AGG | + | chr4_1:20027328-20027347 | Msa0539270:intron | 25.0% |
| !!! | TAGTATTTTGACATGAAACT+TGG | + | chr4_1:20027568-20027587 | Msa0539270:intron | 25.0% |
| ! | AACAGAATTAATAGCTGTTT+GGG | - | chr4_1:20027727-20027746 | None:intergenic | 25.0% |
| ! | TAACAGAATTAATAGCTGTT+TGG | - | chr4_1:20027728-20027747 | None:intergenic | 25.0% |
| ! | TGGTATATAGACAAAAGTTA+TGG | + | chr4_1:20027755-20027774 | Msa0539270:intron | 25.0% |
| ! | TTCAGTGGTACATAATTAAT+TGG | - | chr4_1:20028149-20028168 | None:intergenic | 25.0% |
| !! | ACAAATGATTGATAACTAAG+TGG | - | chr4_1:20028277-20028296 | None:intergenic | 25.0% |
| ! | ATATGTAAACACTGATGAAT+TGG | - | chr4_1:20028633-20028652 | None:intergenic | 25.0% |
| !!! | TTTTTTTATGATTTCAGCTG+TGG | + | chr4_1:20028759-20028778 | Msa0539270:intron | 25.0% |
| !!! | TTTTTTATGATTTCAGCTGT+GGG | + | chr4_1:20028760-20028779 | Msa0539270:intron | 25.0% |
| !!! | TTTTGACTTACTTTCAAGTA+AGG | - | chr4_1:20028854-20028873 | None:intergenic | 25.0% |
| ! | AGAAACTTAAGGTTCAATTA+AGG | - | chr4_1:20028930-20028949 | None:intergenic | 25.0% |
| ! | TATATACATCTTGAATGCAT+TGG | - | chr4_1:20029019-20029038 | None:intergenic | 25.0% |
| ! | GTAAGTGTACAATAGAAATA+AGG | - | chr4_1:20029437-20029456 | None:intergenic | 25.0% |
| !! | ATGTTCATCTTTCTTTTATC+AGG | + | chr4_1:20030075-20030094 | Msa0539270:CDS | 25.0% |
| !! | GATTAAATTTTCTGTTTCAG+AGG | + | chr4_1:20030130-20030149 | Msa0539270:intron | 25.0% |
| ! | ATTTACTAGATACTAGAAGA+TGG | - | chr4_1:20030324-20030343 | None:intergenic | 25.0% |
| ! | TTAGAACTTAGAATTGAATG+TGG | + | chr4_1:20030360-20030379 | Msa0539270:intron | 25.0% |
| ! | TAGTGTTAGAATAACAAATC+CGG | + | chr4_1:20030502-20030521 | Msa0539270:intron | 25.0% |
| ! | AGAAATACAAACTATAGCAA+TGG | - | chr4_1:20030838-20030857 | None:intergenic | 25.0% |
| ! | CATATATTGGAAGATTTCTT+TGG | + | chr4_1:20030887-20030906 | Msa0539270:intron | 25.0% |
| ! | ATGTGATATAATAGCAAAAC+CGG | - | chr4_1:20031270-20031289 | None:intergenic | 25.0% |
| !!! | ATGTTTTGTTCTGATTGTAT+AGG | + | chr4_1:20031310-20031329 | Msa0539270:intron | 25.0% |
| ! | TAGTTTATACAGCATAAACA+TGG | - | chr4_1:20031352-20031371 | None:intergenic | 25.0% |
| ! | GAACTAAATCTAAAAGATCT+AGG | + | chr4_1:20031521-20031540 | Msa0539270:CDS | 25.0% |
| TCATCTTCTTCAATGTCATT+CGG | + | chr4_1:20026258-20026277 | Msa0539270:CDS | 30.0% | |
| TTCTATGATATGGTTTCGAA+AGG | + | chr4_1:20026287-20026306 | Msa0539270:CDS | 30.0% | |
| TCTATGATATGGTTTCGAAA+GGG | + | chr4_1:20026288-20026307 | Msa0539270:CDS | 30.0% | |
| ! | TCTCAAGCAAGAATTTTATC+CGG | - | chr4_1:20026455-20026474 | None:intergenic | 30.0% |
| AAAATTCTTGCTTGAGAGTT+TGG | + | chr4_1:20026458-20026477 | Msa0539270:CDS | 30.0% | |
| AAATTCTTGCTTGAGAGTTT+GGG | + | chr4_1:20026459-20026478 | Msa0539270:CDS | 30.0% | |
| AAAGCTACTAATGTCAGATA+TGG | - | chr4_1:20026794-20026813 | None:intergenic | 30.0% | |
| !!! | CTGACATTAGTAGCTTTTTT+TGG | + | chr4_1:20026797-20026816 | Msa0539270:intron | 30.0% |
| !! | TTTTGGTTACCTAACATTAG+TGG | + | chr4_1:20026814-20026833 | Msa0539270:intron | 30.0% |
| !! | TTTATGGCTTTATGCCTTTA+TGG | + | chr4_1:20026942-20026961 | Msa0539270:intron | 30.0% |
| ACAAAACTTTAATGAGTGTG+TGG | + | chr4_1:20026965-20026984 | Msa0539270:intron | 30.0% | |
| TCAACTTAGGACATATAAGT+TGG | + | chr4_1:20027341-20027360 | Msa0539270:intron | 30.0% | |
| !! | GTTAACTCTGTTGGTTATTT+TGG | + | chr4_1:20027784-20027803 | Msa0539270:intron | 30.0% |
| ATATCCAAAGCCTGATAATA+TGG | - | chr4_1:20027858-20027877 | None:intergenic | 30.0% | |
| TGTAAATGCACTATATGATG+TGG | + | chr4_1:20027932-20027951 | Msa0539270:intron | 30.0% | |
| !! | GGCATGTCTAATTTTTGTTT+TGG | + | chr4_1:20027980-20027999 | Msa0539270:intron | 30.0% |
| TCCAACAGATATTATACAGA+AGG | + | chr4_1:20028071-20028090 | Msa0539270:CDS | 30.0% | |
| ACCTTCTGTATAATATCTGT+TGG | - | chr4_1:20028075-20028094 | None:intergenic | 30.0% | |
| TATGTACCACTGAATTTCAT+AGG | + | chr4_1:20028155-20028174 | Msa0539270:intron | 30.0% | |
| AGAAAACCTATGAAATTCAG+TGG | - | chr4_1:20028164-20028183 | None:intergenic | 30.0% | |
| ATTCATGATCAATTTGTCCA+TGG | + | chr4_1:20028214-20028233 | Msa0539270:intron | 30.0% | |
| ! | AATGATTGATAACTAAGTGG+CGG | - | chr4_1:20028274-20028293 | None:intergenic | 30.0% |
| TATTGCTTAACATGTCTCTT+TGG | + | chr4_1:20028887-20028906 | Msa0539270:intron | 30.0% | |
| ! | AATGCATTGGTAGAAATATC+TGG | - | chr4_1:20029006-20029025 | None:intergenic | 30.0% |
| AACAATATCGTACTAACATC+TGG | - | chr4_1:20029101-20029120 | None:intergenic | 30.0% | |
| TCTTTCATGCTATCGAAATT+TGG | - | chr4_1:20029217-20029236 | None:intergenic | 30.0% | |
| TCGATAGCATGAAAGATAAT+AGG | + | chr4_1:20029221-20029240 | Msa0539270:CDS | 30.0% | |
| ! | TAATTTGTAGATTCCTTGGA+AGG | + | chr4_1:20029582-20029601 | Msa0539270:intron | 30.0% |
| ! | AATGCATTTTCTGAATGAGA+AGG | - | chr4_1:20029788-20029807 | None:intergenic | 30.0% |
| TCAGATTGGGCAATTAATAA+TGG | + | chr4_1:20030034-20030053 | Msa0539270:CDS | 30.0% | |
| ! | TTAATAATGGAAACTGGATG+TGG | + | chr4_1:20030047-20030066 | Msa0539270:CDS | 30.0% |
| AAAATGTCAGTGAAACATTC+AGG | - | chr4_1:20030162-20030181 | None:intergenic | 30.0% | |
| ACCAAAGCAAATTGCATAAT+CGG | + | chr4_1:20030444-20030463 | Msa0539270:CDS | 30.0% | |
| AAGAACACAACATTTGATCA+TGG | + | chr4_1:20030550-20030569 | Msa0539270:intron | 30.0% | |
| ATACAAACTATAGCAATGGA+TGG | - | chr4_1:20030834-20030853 | None:intergenic | 30.0% | |
| !! | GCTATAGTTTGTATTTCTAG+TGG | + | chr4_1:20030840-20030859 | Msa0539270:intron | 30.0% |
| ATTGGAAGATTTCTTTGGTT+CGG | + | chr4_1:20030892-20030911 | Msa0539270:intron | 30.0% | |
| !! | ATGTGAGGGTATTTATGAAA+TGG | + | chr4_1:20031023-20031042 | Msa0539270:intron | 30.0% |
| AGACGGTTGATTACATAATT+CGG | - | chr4_1:20031210-20031229 | None:intergenic | 30.0% | |
| !! | TTTATCTGTTTCTTTAGAGC+CGG | + | chr4_1:20031248-20031267 | Msa0539270:intron | 30.0% |
| CAAAACATGTCAATTTGATC+AGG | - | chr4_1:20031298-20031317 | None:intergenic | 30.0% | |
| ! | TAAAGAGTGCAAAAGGAAAA+TGG | + | chr4_1:20031402-20031421 | Msa0539270:CDS | 30.0% |
| ! | AAAGAGTGCAAAAGGAAAAT+GGG | + | chr4_1:20031403-20031422 | Msa0539270:CDS | 30.0% |
| !! | CAGTGCTTTATTTAATGCAT+AGG | - | chr4_1:20031434-20031453 | None:intergenic | 30.0% |
| !! | GCATTAAATAAAGCACTGAA+TGG | + | chr4_1:20031436-20031455 | Msa0539270:CDS | 30.0% |
| !! | AAATAAAGCACTGAATGGTT+TGG | + | chr4_1:20031441-20031460 | Msa0539270:CDS | 30.0% |
| AAGATGATCTGAAAAACTTG+AGG | + | chr4_1:20031470-20031489 | Msa0539270:CDS | 30.0% | |
| !!! | TGGCTGAGGAAATTTTTTAT+TGG | + | chr4_1:20031555-20031574 | Msa0539270:exon | 30.0% |
| ! | ATTGGTTTACTATGCAAGAT+TGG | + | chr4_1:20031573-20031592 | Msa0539270:three_prime_UTR | 30.0% |
| CACTACATTATATACATGTC+TGG | - | chr4_1:20031633-20031652 | None:intergenic | 30.0% | |
| TGTAATGTAGTGCAATTCTT+AGG | + | chr4_1:20031766-20031785 | Msa0539270:three_prime_UTR | 30.0% | |
| GTAATGTAGTGCAATTCTTA+GGG | + | chr4_1:20031767-20031786 | Msa0539270:three_prime_UTR | 30.0% | |
| TGTGACACTAACATTAGTTA+TGG | - | chr4_1:20031809-20031828 | None:intergenic | 30.0% | |
| ACTAATGTTAGTGTCACATA+CGG | + | chr4_1:20031811-20031830 | Msa0539270:three_prime_UTR | 30.0% | |
| GTGTAGGTTGTTGAATTAGA+GGG | - | chr4_1:20026124-20026143 | None:intergenic | 35.0% | |
| AATGAAATGGATAAGAGGTG+TGG | - | chr4_1:20026170-20026189 | None:intergenic | 35.0% | |
| CATCTTCTTCAATGTCATTC+GGG | + | chr4_1:20026259-20026278 | Msa0539270:CDS | 35.0% | |
| !! | TATGGTTTCGAAAGGGTATT+CGG | + | chr4_1:20026295-20026314 | Msa0539270:CDS | 35.0% |
| !! | TTCGAGATTGTTGGTTCTTA+AGG | + | chr4_1:20026512-20026531 | Msa0539270:CDS | 35.0% |
| !! | TCGAGATTGTTGGTTCTTAA+GGG | + | chr4_1:20026513-20026532 | Msa0539270:CDS | 35.0% |
| ATCCTAGTGAAGTTCTTGTT+CGG | + | chr4_1:20026538-20026557 | Msa0539270:CDS | 35.0% | |
| TGCAGTCTAATCTGATTCAA+AGG | - | chr4_1:20027082-20027101 | None:intergenic | 35.0% | |
| ! | TGGATTAGAATCTATGACCT+TGG | + | chr4_1:20027155-20027174 | Msa0539270:intron | 35.0% |
| TCTATGACCTTGGATTAAAC+TGG | + | chr4_1:20027165-20027184 | Msa0539270:intron | 35.0% | |
| ! | TACCCAACAAGTTTTTACGT+GGG | - | chr4_1:20027486-20027505 | None:intergenic | 35.0% |
| ! | TTACCCAACAAGTTTTTACG+TGG | - | chr4_1:20027487-20027506 | None:intergenic | 35.0% |
| TTCCCAAACTTGTGATCAAT+GGG | - | chr4_1:20027695-20027714 | None:intergenic | 35.0% | |
| TTTCCCAAACTTGTGATCAA+TGG | - | chr4_1:20027696-20027715 | None:intergenic | 35.0% | |
| TGGTAGTTAGTTAACTCTGT+TGG | + | chr4_1:20027775-20027794 | Msa0539270:intron | 35.0% | |
| ! | GTTATGCTTTGAGTATGACA+CGG | + | chr4_1:20027830-20027849 | Msa0539270:CDS | 35.0% |
| !! | GGCTTTGGATATTAAAGTCA+AGG | + | chr4_1:20027866-20027885 | Msa0539270:CDS | 35.0% |
| ATTACAGGACTATGCTCTTA+AGG | + | chr4_1:20028005-20028024 | Msa0539270:intron | 35.0% | |
| TTATGCCAAATCAGAATGGA+GGG | + | chr4_1:20028245-20028264 | Msa0539270:intron | 35.0% | |
| TATCCAAGGTCTTTGATTGT+TGG | - | chr4_1:20028394-20028413 | None:intergenic | 35.0% | |
| GTTGATCATCTTCATATCCA+AGG | - | chr4_1:20028408-20028427 | None:intergenic | 35.0% | |
| TGGATATGAAGATGATCAAC+TGG | + | chr4_1:20028408-20028427 | Msa0539270:CDS | 35.0% | |
| CTCTAATTAGGTGTTCCTAA+AGG | - | chr4_1:20028463-20028482 | None:intergenic | 35.0% | |
| !! | ATCAGAAGCATTGAAGAGAT+TGG | + | chr4_1:20028522-20028541 | Msa0539270:CDS | 35.0% |
| GGTGATAAAATAGTTGTTGC+TGG | - | chr4_1:20028833-20028852 | None:intergenic | 35.0% | |
| !!! | AACCTTTTTAGTTTCCGAAG+TGG | - | chr4_1:20029133-20029152 | None:intergenic | 35.0% |
| ! | TTCTTTTACACTGCAGCTTT+TGG | + | chr4_1:20029187-20029206 | Msa0539270:CDS | 35.0% |
| ! | TCTTTTACACTGCAGCTTTT+GGG | + | chr4_1:20029188-20029207 | Msa0539270:CDS | 35.0% |
| AGATAATAGGATATGCAAGC+AGG | + | chr4_1:20029234-20029253 | Msa0539270:CDS | 35.0% | |
| AGTTTATCATCATCCTTCCA+AGG | - | chr4_1:20029598-20029617 | None:intergenic | 35.0% | |
| GAAGGATGATGATAAACTTC+TGG | + | chr4_1:20029600-20029619 | Msa0539270:CDS | 35.0% | |
| CGTAGCTACACAGAAAAATA+TGG | - | chr4_1:20029816-20029835 | None:intergenic | 35.0% | |
| TATTATGGCAGTTTGTCCAT+TGG | + | chr4_1:20029972-20029991 | Msa0539270:intron | 35.0% | |
| ATTATGGCAGTTTGTCCATT+GGG | + | chr4_1:20029973-20029992 | Msa0539270:intron | 35.0% | |
| ! | GCTTCTGATTGATTCAGATT+GGG | + | chr4_1:20030021-20030040 | Msa0539270:CDS | 35.0% |
| ! | GGGCAATTAATAATGGAAAC+TGG | + | chr4_1:20030041-20030060 | Msa0539270:CDS | 35.0% |
| ATTTATTCCCCAACCACATT+TGG | + | chr4_1:20030217-20030236 | Msa0539270:CDS | 35.0% | |
| ACTTCTTACCAAATGTGGTT+GGG | - | chr4_1:20030228-20030247 | None:intergenic | 35.0% | |
| TACTTCTTACCAAATGTGGT+TGG | - | chr4_1:20030229-20030248 | None:intergenic | 35.0% | |
| GTCATACTTCTTACCAAATG+TGG | - | chr4_1:20030233-20030252 | None:intergenic | 35.0% | |
| ACCCTAATGGTGACTATATT+AGG | + | chr4_1:20030251-20030270 | Msa0539270:CDS | 35.0% | |
| GCCTAATATAGTCACCATTA+GGG | - | chr4_1:20030255-20030274 | None:intergenic | 35.0% | |
| TGCCTAATATAGTCACCATT+AGG | - | chr4_1:20030256-20030275 | None:intergenic | 35.0% | |
| ! | CATTTTCTCCCAGTCTTAAA+AGG | + | chr4_1:20030274-20030293 | Msa0539270:CDS | 35.0% |
| ! | TTATGCAATTTGCTTTGGTC+TGG | - | chr4_1:20030443-20030462 | None:intergenic | 35.0% |
| ! | TCCGATTATGCAATTTGCTT+TGG | - | chr4_1:20030448-20030467 | None:intergenic | 35.0% |
| CAACATTTGATCATGGAGTT+TGG | + | chr4_1:20030557-20030576 | Msa0539270:intron | 35.0% | |
| TCAGAGGTAAAGTTGTAAAC+TGG | - | chr4_1:20030647-20030666 | None:intergenic | 35.0% | |
| ! | TTGTTTGTTGGGTTACAACT+AGG | - | chr4_1:20030711-20030730 | None:intergenic | 35.0% |
| AGTTGTAACCCAACAAACAA+AGG | + | chr4_1:20030711-20030730 | Msa0539270:intron | 35.0% | |
| GTTGTAACCCAACAAACAAA+GGG | + | chr4_1:20030712-20030731 | Msa0539270:intron | 35.0% | |
| ! | GCTCATTTTCACTGATAAGT+GGG | - | chr4_1:20030812-20030831 | None:intergenic | 35.0% |
| CGATAAGCAGCTTCATATAT+TGG | + | chr4_1:20030874-20030893 | Msa0539270:intron | 35.0% | |
| GAGTATTAGATTCTCTTGAG+AGG | + | chr4_1:20030934-20030953 | Msa0539270:intron | 35.0% | |
| ATAAATACCCTCACATGTCA+GGG | - | chr4_1:20031019-20031038 | None:intergenic | 35.0% | |
| TTTACATCTCTGATAGCTGA+GGG | - | chr4_1:20031178-20031197 | None:intergenic | 35.0% | |
| AAACACACAAAGAACACAGA+CGG | - | chr4_1:20031227-20031246 | None:intergenic | 35.0% | |
| ATGATCTGAAAAACTTGAGG+AGG | + | chr4_1:20031473-20031492 | Msa0539270:CDS | 35.0% | |
| GAAAAACTTGAGGAGGAAAT+TGG | + | chr4_1:20031480-20031499 | Msa0539270:CDS | 35.0% | |
| TACTAGTATCCTAGACTTGT+AGG | + | chr4_1:20031664-20031683 | Msa0539270:three_prime_UTR | 35.0% | |
| ATGATAACAGCTGCTAGAAA+CGG | - | chr4_1:20031704-20031723 | None:intergenic | 35.0% | |
| AGGTTGTTGAATTAGAGGGT+GGG | - | chr4_1:20026120-20026139 | None:intergenic | 40.0% | |
| TAGGTTGTTGAATTAGAGGG+TGG | - | chr4_1:20026121-20026140 | None:intergenic | 40.0% | |
| GGTGTAGGTTGTTGAATTAG+AGG | - | chr4_1:20026125-20026144 | None:intergenic | 40.0% | |
| TTCTTCAATGTCATTCGGGT+CGG | + | chr4_1:20026263-20026282 | Msa0539270:CDS | 40.0% | |
| AAGATTAGAACAACCTCGTG+TGG | - | chr4_1:20026349-20026368 | None:intergenic | 40.0% | |
| TGCGGGTCAATAACAAAAAG+AGG | - | chr4_1:20026375-20026394 | None:intergenic | 40.0% | |
| !! | GAAGATTGGTTCGAGATTGT+TGG | + | chr4_1:20026503-20026522 | Msa0539270:CDS | 40.0% |
| GTTGTTGCATACTTGCATTG+TGG | + | chr4_1:20026616-20026635 | Msa0539270:intron | 40.0% | |
| ATCTCAACAATTGCGAGCAA+AGG | - | chr4_1:20027055-20027074 | None:intergenic | 40.0% | |
| TATTGTTGCATTCTCAGAGC+TGG | + | chr4_1:20027135-20027154 | Msa0539270:intron | 40.0% | |
| TGACCTTGGATTAAACTGGA+AGG | + | chr4_1:20027169-20027188 | Msa0539270:intron | 40.0% | |
| GATCCTTCCAGTTTAATCCA+AGG | - | chr4_1:20027175-20027194 | None:intergenic | 40.0% | |
| CATATCATCCAAGTGCTCTT+GGG | + | chr4_1:20027201-20027220 | Msa0539270:intron | 40.0% | |
| AGACAGACACAAATCAGCTT+TGG | + | chr4_1:20027243-20027262 | Msa0539270:intron | 40.0% | |
| GACAGACACAAATCAGCTTT+GGG | + | chr4_1:20027244-20027263 | Msa0539270:intron | 40.0% | |
| ! | CTCTTAGTTTGGCTGATGTT+TGG | + | chr4_1:20027406-20027425 | Msa0539270:intron | 40.0% |
| ! | TTAGTTTGGCTGATGTTTGG+AGG | + | chr4_1:20027409-20027428 | Msa0539270:intron | 40.0% |
| TACCCCACGTAAAAACTTGT+TGG | + | chr4_1:20027480-20027499 | Msa0539270:intron | 40.0% | |
| ! | ACCCCACGTAAAAACTTGTT+GGG | + | chr4_1:20027481-20027500 | Msa0539270:intron | 40.0% |
| ! | ACCCAACAAGTTTTTACGTG+GGG | - | chr4_1:20027485-20027504 | None:intergenic | 40.0% |
| TAGCCCATTGATCACAAGTT+TGG | + | chr4_1:20027689-20027708 | Msa0539270:intron | 40.0% | |
| AGCCCATTGATCACAAGTTT+GGG | + | chr4_1:20027690-20027709 | Msa0539270:intron | 40.0% | |
| !!! | GGTTATTTTGGTTGATGCAG+TGG | + | chr4_1:20027796-20027815 | Msa0539270:intron | 40.0% |
| TGACACGGATCCATATTATC+AGG | + | chr4_1:20027845-20027864 | Msa0539270:CDS | 40.0% | |
| GGATCCATATTATCAGGCTT+TGG | + | chr4_1:20027851-20027870 | Msa0539270:CDS | 40.0% | |
| ! | TTGAAAAGTGTGTGGCTTAC+AGG | - | chr4_1:20028051-20028070 | None:intergenic | 40.0% |
| ! | CTGTTGGATTGAAAAGTGTG+TGG | - | chr4_1:20028059-20028078 | None:intergenic | 40.0% |
| GTGCTTATGCCAAATCAGAA+TGG | + | chr4_1:20028241-20028260 | Msa0539270:intron | 40.0% | |
| CTTATGCCAAATCAGAATGG+AGG | + | chr4_1:20028244-20028263 | Msa0539270:intron | 40.0% | |
| CAATCATTTGTCAAGCTTGC+AGG | + | chr4_1:20028286-20028305 | Msa0539270:CDS | 40.0% | |
| TGGAGGAAGTGAAGAATACT+TGG | - | chr4_1:20028335-20028354 | None:intergenic | 40.0% | |
| TATTCTTCACTTCCTCCAGT+TGG | + | chr4_1:20028337-20028356 | Msa0539270:CDS | 40.0% | |
| AAACATCGCAACTTCCAAGA+GGG | - | chr4_1:20028363-20028382 | None:intergenic | 40.0% | |
| GTTCCAACAATCAAAGACCT+TGG | + | chr4_1:20028388-20028407 | Msa0539270:CDS | 40.0% | |
| GGAAGAATGCATGAAAGACA+AGG | + | chr4_1:20028543-20028562 | Msa0539270:CDS | 40.0% | |
| ATGAATTGGATTCGTGAGTC+GGG | - | chr4_1:20028619-20028638 | None:intergenic | 40.0% | |
| GATGAATTGGATTCGTGAGT+CGG | - | chr4_1:20028620-20028639 | None:intergenic | 40.0% | |
| TTTATGATTTCAGCTGTGGG+TGG | + | chr4_1:20028763-20028782 | Msa0539270:intron | 40.0% | |
| ! | GCAAACTTTGAGAAACCCAA+GGG | + | chr4_1:20028785-20028804 | Msa0539270:CDS | 40.0% |
| !! | AATGCAGATGGATTACCCTT+GGG | - | chr4_1:20028803-20028822 | None:intergenic | 40.0% |
| !! | AAATGCAGATGGATTACCCT+TGG | - | chr4_1:20028804-20028823 | None:intergenic | 40.0% |
| TTGTTGATCTCCTTGCAGTT+TGG | + | chr4_1:20028969-20028988 | Msa0539270:intron | 40.0% | |
| CTCCACTTCGGAAACTAAAA+AGG | + | chr4_1:20029128-20029147 | Msa0539270:intron | 40.0% | |
| GGATGATGATAAACTTCTGG+AGG | + | chr4_1:20029603-20029622 | Msa0539270:CDS | 40.0% | |
| ! | ATGATAAACTTCTGGAGGCT+TGG | + | chr4_1:20029608-20029627 | Msa0539270:CDS | 40.0% |
| ATGCTAAGACAGGATTTCCT+TGG | + | chr4_1:20029635-20029654 | Msa0539270:CDS | 40.0% | |
| TCCTTGGATTGATGCTATCA+TGG | + | chr4_1:20029651-20029670 | Msa0539270:CDS | 40.0% | |
| ACCATGATAGCATCAATCCA+AGG | - | chr4_1:20029655-20029674 | None:intergenic | 40.0% | |
| GATTGATGCTATCATGGTTC+AGG | + | chr4_1:20029657-20029676 | Msa0539270:CDS | 40.0% | |
| ! | ATGCTATCATGGTTCAGGTT+TGG | + | chr4_1:20029662-20029681 | Msa0539270:intron | 40.0% |
| ! | TGCTATCATGGTTCAGGTTT+GGG | + | chr4_1:20029663-20029682 | Msa0539270:intron | 40.0% |
| ! | GTTGCATGTTTTCTAACTCG+AGG | + | chr4_1:20029873-20029892 | Msa0539270:CDS | 40.0% |
| ! | TTTTCTAACTCGAGGTGATC+TGG | + | chr4_1:20029881-20029900 | Msa0539270:CDS | 40.0% |
| GACATTGATACTCTCAAGCT+TGG | + | chr4_1:20029909-20029928 | Msa0539270:intron | 40.0% | |
| CAGTTTGTCCATTGGGAAAA+AGG | + | chr4_1:20029980-20029999 | Msa0539270:intron | 40.0% | |
| ! | GGCTTCTGATTGATTCAGAT+TGG | + | chr4_1:20030020-20030039 | Msa0539270:CDS | 40.0% |
| CTTCTTACCAAATGTGGTTG+GGG | - | chr4_1:20030227-20030246 | None:intergenic | 40.0% | |
| ! | GGTAAGAAGTATGACCCTAA+TGG | + | chr4_1:20030238-20030257 | Msa0539270:CDS | 40.0% |
| CTAGAAGATGGCGAAAATGA+GGG | - | chr4_1:20030312-20030331 | None:intergenic | 40.0% | |
| ACTAGAAGATGGCGAAAATG+AGG | - | chr4_1:20030313-20030332 | None:intergenic | 40.0% | |
| ACTAAATGACAGCACTAACC+TGG | - | chr4_1:20030486-20030505 | None:intergenic | 40.0% | |
| AAATGCAACAACTCTACCGT+CGG | - | chr4_1:20030587-20030606 | None:intergenic | 40.0% | |
| TAAAGGAAGTTCTCGCTGTA+TGG | - | chr4_1:20030671-20030690 | None:intergenic | 40.0% | |
| GGTTACAACTAGGAGAGTTA+GGG | - | chr4_1:20030701-20030720 | None:intergenic | 40.0% | |
| ! | GGCTCATTTTCACTGATAAG+TGG | - | chr4_1:20030813-20030832 | None:intergenic | 40.0% |
| CATAAATACCCTCACATGTC+AGG | - | chr4_1:20031020-20031039 | None:intergenic | 40.0% | |
| GTTTACATCTCTGATAGCTG+AGG | - | chr4_1:20031179-20031198 | None:intergenic | 40.0% | |
| ! | CTGCAAGTAAAGAGTGCAAA+AGG | + | chr4_1:20031395-20031414 | Msa0539270:CDS | 40.0% |
| TTGAGGAGGAAATTGGATGA+GGG | + | chr4_1:20031487-20031506 | Msa0539270:CDS | 40.0% | |
| TAGTATCCTAGACTTGTAGG+AGG | + | chr4_1:20031667-20031686 | Msa0539270:three_prime_UTR | 40.0% | |
| AAGTTACCTCCTACAAGTCT+AGG | - | chr4_1:20031676-20031695 | None:intergenic | 40.0% | |
| CTAGCAGCTGTTATCATGTA+AGG | + | chr4_1:20031707-20031726 | Msa0539270:three_prime_UTR | 40.0% | |
| TGCACTACATTACAAGAGTG+AGG | - | chr4_1:20031760-20031779 | None:intergenic | 40.0% | |
| GCGCGCGTTATGAAATGAAA+TGG | - | chr4_1:20026183-20026202 | None:intergenic | 45.0% | |
| TCTTCAATGTCATTCGGGTC+GGG | + | chr4_1:20026264-20026283 | Msa0539270:CDS | 45.0% | |
| TATTCGGATCCACGATAACC+CGG | + | chr4_1:20026311-20026330 | Msa0539270:CDS | 45.0% | |
| GATCGGGTTTCATGTAATGC+GGG | - | chr4_1:20026392-20026411 | None:intergenic | 45.0% | |
| GGATCGGGTTTCATGTAATG+CGG | - | chr4_1:20026393-20026412 | None:intergenic | 45.0% | |
| !! | GGTGAGAAAGCATTTGGATC+GGG | - | chr4_1:20026408-20026427 | None:intergenic | 45.0% |
| !! | GGGTGAGAAAGCATTTGGAT+CGG | - | chr4_1:20026409-20026428 | None:intergenic | 45.0% |
| GATCCAAATGCTTTCTCACC+CGG | + | chr4_1:20026408-20026427 | Msa0539270:CDS | 45.0% | |
| CACCGAACAAGAACTTCACT+AGG | - | chr4_1:20026543-20026562 | None:intergenic | 45.0% | |
| !! | TCTTGTTCGGTGCTTGAAAG+AGG | + | chr4_1:20026551-20026570 | Msa0539270:CDS | 45.0% |
| !! | CCAAGAGCACTTGGATGATA+TGG | - | chr4_1:20027203-20027222 | None:intergenic | 45.0% |
| CCATATCATCCAAGTGCTCT+TGG | + | chr4_1:20027200-20027219 | Msa0539270:intron | 45.0% | |
| !! | AATCACTACCCAAGAGCACT+TGG | - | chr4_1:20027212-20027231 | None:intergenic | 45.0% |
| CGTCTAGTCAAGCTGAGATT+TGG | + | chr4_1:20027617-20027636 | Msa0539270:intron | 45.0% | |
| CTAGTCAAGCTGAGATTTGG+AGG | + | chr4_1:20027620-20027639 | Msa0539270:intron | 45.0% | |
| ! | TGGTTGATGCAGTGGAACAT+TGG | + | chr4_1:20027804-20027823 | Msa0539270:intron | 45.0% |
| TGCTCTTAAGGCAGGAATTG+AGG | + | chr4_1:20028017-20028036 | Msa0539270:CDS | 45.0% | |
| TTGGCATAAGCACAAGACCA+TGG | - | chr4_1:20028234-20028253 | None:intergenic | 45.0% | |
| GAAGAATACTTGGTTGCGAG+AGG | - | chr4_1:20028325-20028344 | None:intergenic | 45.0% | |
| GAAACATCGCAACTTCCAAG+AGG | - | chr4_1:20028364-20028383 | None:intergenic | 45.0% | |
| CAGGAGTTCTCTCCATTCAA+AGG | + | chr4_1:20028493-20028512 | Msa0539270:intron | 45.0% | |
| GAGTTCTCTCCATTCAAAGG+CGG | + | chr4_1:20028496-20028515 | Msa0539270:CDS | 45.0% | |
| TCTGATTCACCGCCTTTGAA+TGG | - | chr4_1:20028508-20028527 | None:intergenic | 45.0% | |
| ! | GGCAAACTTTGAGAAACCCA+AGG | + | chr4_1:20028784-20028803 | Msa0539270:CDS | 45.0% |
| ! | GCTGGCTTAAGAAATGCAGA+TGG | - | chr4_1:20028815-20028834 | None:intergenic | 45.0% |
| AGAGAGACAACCAAACTGCA+AGG | - | chr4_1:20028982-20029001 | None:intergenic | 45.0% | |
| ACAGGTGGTGAAGTATGCTT+TGG | - | chr4_1:20029050-20029069 | None:intergenic | 45.0% | |
| ! | TCACCACCTGTTTCTCTTCT+AGG | + | chr4_1:20029059-20029078 | Msa0539270:CDS | 45.0% |
| TGTCCTAGAAGAGAAACAGG+TGG | - | chr4_1:20029065-20029084 | None:intergenic | 45.0% | |
| !! | ACCTGTTTCTCTTCTAGGAC+AGG | + | chr4_1:20029064-20029083 | Msa0539270:CDS | 45.0% |
| ACCTGTCCTAGAAGAGAAAC+AGG | - | chr4_1:20029068-20029087 | None:intergenic | 45.0% | |
| TTGTTTGTCGAGCTCCACTT+CGG | + | chr4_1:20029116-20029135 | Msa0539270:intron | 45.0% | |
| GTTGACATGTGCAGTTGTTG+TGG | + | chr4_1:20029158-20029177 | Msa0539270:intron | 45.0% | |
| TTTCTGTGTAGCTACGCCAA+TGG | + | chr4_1:20029820-20029839 | Msa0539270:intron | 45.0% | |
| TTCTGTGTAGCTACGCCAAT+GGG | + | chr4_1:20029821-20029840 | Msa0539270:intron | 45.0% | |
| AATGATGCATCCAACCCCAT+TGG | - | chr4_1:20029839-20029858 | None:intergenic | 45.0% | |
| GGTTCATAGATGTACGCCTT+GGG | - | chr4_1:20030399-20030418 | None:intergenic | 45.0% | |
| TGGTTCATAGATGTACGCCT+TGG | - | chr4_1:20030400-20030419 | None:intergenic | 45.0% | |
| AGGCGTACATCTATGAACCA+TGG | + | chr4_1:20030400-20030419 | Msa0539270:CDS | 45.0% | |
| TTTGCTTTGGTCTGGATGCT+TGG | - | chr4_1:20030435-20030454 | None:intergenic | 45.0% | |
| GGAAAAGACTATCCAATGCC+AGG | + | chr4_1:20030465-20030484 | Msa0539270:CDS | 45.0% | |
| GGGTTACAACTAGGAGAGTT+AGG | - | chr4_1:20030702-20030721 | None:intergenic | 45.0% | |
| ! | GGTTTGGCCCTTTGTTTGTT+GGG | - | chr4_1:20030722-20030741 | None:intergenic | 45.0% |
| AAACAAAGGGCCAAACCCAA+AGG | + | chr4_1:20030725-20030744 | Msa0539270:intron | 45.0% | |
| AACAAAGGGCCAAACCCAAA+GGG | + | chr4_1:20030726-20030745 | Msa0539270:intron | 45.0% | |
| ! | CAGTGGAGCTGAAAGTGTAA+CGG | - | chr4_1:20030761-20030780 | None:intergenic | 45.0% |
| GTGTAGCATATCAGAGACAG+TGG | - | chr4_1:20030778-20030797 | None:intergenic | 45.0% | |
| TCTTATGACCCTGACATGTG+AGG | + | chr4_1:20031008-20031027 | Msa0539270:intron | 45.0% | |
| CTTATGACCCTGACATGTGA+GGG | + | chr4_1:20031009-20031028 | Msa0539270:intron | 45.0% | |
| GTGCAAAAGGAAAATGGGTG+AGG | + | chr4_1:20031408-20031427 | Msa0539270:CDS | 45.0% | |
| CTTGAGGAGGAAATTGGATG+AGG | + | chr4_1:20031486-20031505 | Msa0539270:CDS | 45.0% | |
| TTGGATGAGGGTGAAGAACA+AGG | + | chr4_1:20031499-20031518 | Msa0539270:CDS | 45.0% | |
| AGATCTAGGCAGCTACTGAT+TGG | + | chr4_1:20031535-20031554 | Msa0539270:CDS | 45.0% | |
| ACATACGGCACACTATCACA+CGG | + | chr4_1:20031826-20031845 | Msa0539270:three_prime_UTR | 45.0% | |
| TTGTGTCTAACGTGCGCTAG+GGG | - | chr4_1:20026147-20026166 | None:intergenic | 50.0% | |
| GTTGTGTCTAACGTGCGCTA+GGG | - | chr4_1:20026148-20026167 | None:intergenic | 50.0% | |
| TCGGGTCGGGTTCTATGATA+TGG | + | chr4_1:20026277-20026296 | Msa0539270:CDS | 50.0% | |
| ! | ATTCTAGTGCCGGGTTATCG+TGG | - | chr4_1:20026323-20026342 | None:intergenic | 50.0% |
| GTGTGGCATATTCTAGTGCC+GGG | - | chr4_1:20026332-20026351 | None:intergenic | 50.0% | |
| CGTGTGGCATATTCTAGTGC+CGG | - | chr4_1:20026333-20026352 | None:intergenic | 50.0% | |
| GCACTAGAATATGCCACACG+AGG | + | chr4_1:20026333-20026352 | Msa0539270:CDS | 50.0% | |
| !! | GAACCGGGTGAGAAAGCATT+TGG | - | chr4_1:20026414-20026433 | None:intergenic | 50.0% |
| CAGGACTATGCTCTTAAGGC+AGG | + | chr4_1:20028009-20028028 | Msa0539270:intron | 50.0% | |
| GGCTTCCCTCCATTCTGATT+TGG | - | chr4_1:20028253-20028272 | None:intergenic | 50.0% | |
| TACTTGGTTGCGAGAGGAGA+TGG | - | chr4_1:20028319-20028338 | None:intergenic | 50.0% | |
| TGGATTCGTGAGTCGGGAAA+TGG | - | chr4_1:20028613-20028632 | None:intergenic | 50.0% | |
| GCAGGTGAGACAGCAATCAA+TGG | + | chr4_1:20029252-20029271 | Msa0539270:intron | 50.0% | |
| GCTTGGAGAGATGCTAAGAC+AGG | + | chr4_1:20029625-20029644 | Msa0539270:CDS | 50.0% | |
| TCTGTGTAGCTACGCCAATG+GGG | + | chr4_1:20029822-20029841 | Msa0539270:intron | 50.0% | |
| ! | CGTCACGTCCTTTTTCCCAA+TGG | - | chr4_1:20029991-20030010 | None:intergenic | 50.0% |
| AAGGACGTGACGTCTTTGAG+AGG | + | chr4_1:20029999-20030018 | Msa0539270:CDS | 50.0% | |
| TGGTTGAGCAGATATGCCCA+AGG | + | chr4_1:20030380-20030399 | Msa0539270:intron | 50.0% | |
| ATGCTTGGAGGAGATGTCCA+TGG | - | chr4_1:20030420-20030439 | None:intergenic | 50.0% | |
| TGACAGCACTAACCTGGCAT+TGG | - | chr4_1:20030480-20030499 | None:intergenic | 50.0% | |
| GTTCTCGCTGTATGGTTCAG+AGG | - | chr4_1:20030663-20030682 | None:intergenic | 50.0% | |
| ! | GGGTTTGGCCCTTTGTTTGT+TGG | - | chr4_1:20030723-20030742 | None:intergenic | 50.0% |
| ! | AAGCTCCTTCCCTTTGGGTT+TGG | - | chr4_1:20030738-20030757 | None:intergenic | 50.0% |
| AACGGAAGCTCCTTCCCTTT+GGG | - | chr4_1:20030743-20030762 | None:intergenic | 50.0% | |
| TAACGGAAGCTCCTTCCCTT+TGG | - | chr4_1:20030744-20030763 | None:intergenic | 50.0% | |
| GTTCGGATAAGCTGCTGCAA+GGG | + | chr4_1:20030909-20030928 | Msa0539270:intron | 50.0% | |
| TGTGTCTAACGTGCGCTAGG+GGG | - | chr4_1:20026146-20026165 | None:intergenic | 55.0% | |
| GGTTGTGTCTAACGTGCGCT+AGG | - | chr4_1:20026149-20026168 | None:intergenic | 55.0% | |
| TTGGTTGCGAGAGGAGATGG+CGG | - | chr4_1:20028316-20028335 | None:intergenic | 55.0% | |
| CAACTTCCAAGAGGGCCAAC+TGG | - | chr4_1:20028355-20028374 | None:intergenic | 55.0% | |
| TGTAGCTACGCCAATGGGGT+TGG | + | chr4_1:20029826-20029845 | Msa0539270:intron | 55.0% | |
| GCTTTGGTCTGGATGCTTGG+AGG | - | chr4_1:20030432-20030451 | None:intergenic | 55.0% | |
| CATGGAGTTTGGCCATCCGA+CGG | + | chr4_1:20030568-20030587 | Msa0539270:intron | 55.0% | |
| GCAACAACTCTACCGTCGGA+TGG | - | chr4_1:20030583-20030602 | None:intergenic | 55.0% | |
| AGAGTTAGGGCGTGCGGTAA+AGG | - | chr4_1:20030688-20030707 | None:intergenic | 55.0% | |
| ACTAGGAGAGTTAGGGCGTG+CGG | - | chr4_1:20030694-20030713 | None:intergenic | 55.0% | |
| AAGGGCCAAACCCAAAGGGA+AGG | + | chr4_1:20030730-20030749 | Msa0539270:intron | 55.0% | |
| GGTTCGGATAAGCTGCTGCA+AGG | + | chr4_1:20030908-20030927 | Msa0539270:intron | 55.0% | |
| ! | AGGCAGCTACTGATTGGCTG+AGG | + | chr4_1:20031541-20031560 | Msa0539270:CDS | 55.0% |
| ! | TAACGTGCGCTAGGGGGTGT+AGG | - | chr4_1:20026140-20026159 | None:intergenic | 60.0% |
| CTCACCCGGTTCATCTCGTG+CGG | + | chr4_1:20026422-20026441 | Msa0539270:CDS | 60.0% | |
| TCACCCGGTTCATCTCGTGC+GGG | + | chr4_1:20026423-20026442 | Msa0539270:CDS | 60.0% | |
| AGACCCGCACGAGATGAACC+GGG | - | chr4_1:20026429-20026448 | None:intergenic | 60.0% | |
| CAGACCCGCACGAGATGAAC+CGG | - | chr4_1:20026430-20026449 | None:intergenic | 60.0% | |
| CATCTCGTGCGGGTCTGAAC+CGG | + | chr4_1:20026433-20026452 | Msa0539270:CDS | 60.0% | |
| CTTCCTCCAGTTGGCCCTCT+TGG | + | chr4_1:20028346-20028365 | Msa0539270:CDS | 60.0% | |
| CTTCCAAGAGGGCCAACTGG+AGG | - | chr4_1:20028352-20028371 | None:intergenic | 60.0% | |
| CGGATAAGCTGCTGCAAGGG+AGG | + | chr4_1:20030912-20030931 | Msa0539270:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 20026102 | 20031872 | 20026102 | ID=Msa0539270;Name=Msa0539270 |
| chr4_1 | mRNA | 20026102 | 20031872 | 20026102 | ID=Msa0539270-mRNA-1;Parent=Msa0539270;Name=Msa0539270-mRNA-1;_AED=0.15;_eAED=0.15;_QI=144|1|1|1|1|1|14|311|542 |
| chr4_1 | exon | 20026102 | 20026572 | 20026102 | ID=Msa0539270-mRNA-1:exon:5757;Parent=Msa0539270-mRNA-1 |
| chr4_1 | exon | 20027816 | 20027887 | 20027816 | ID=Msa0539270-mRNA-1:exon:5758;Parent=Msa0539270-mRNA-1 |
| chr4_1 | exon | 20028012 | 20028092 | 20028012 | ID=Msa0539270-mRNA-1:exon:5759;Parent=Msa0539270-mRNA-1 |
| chr4_1 | exon | 20028259 | 20028429 | 20028259 | ID=Msa0539270-mRNA-1:exon:5760;Parent=Msa0539270-mRNA-1 |
| chr4_1 | exon | 20028496 | 20028564 | 20028496 | ID=Msa0539270-mRNA-1:exon:5761;Parent=Msa0539270-mRNA-1 |
| chr4_1 | exon | 20028776 | 20028862 | 20028776 | ID=Msa0539270-mRNA-1:exon:5762;Parent=Msa0539270-mRNA-1 |
| chr4_1 | exon | 20028987 | 20029085 | 20028987 | ID=Msa0539270-mRNA-1:exon:5763;Parent=Msa0539270-mRNA-1 |
| chr4_1 | exon | 20029172 | 20029255 | 20029172 | ID=Msa0539270-mRNA-1:exon:5764;Parent=Msa0539270-mRNA-1 |
| chr4_1 | exon | 20029592 | 20029678 | 20029592 | ID=Msa0539270-mRNA-1:exon:5765;Parent=Msa0539270-mRNA-1 |
| chr4_1 | exon | 20029831 | 20029902 | 20029831 | ID=Msa0539270-mRNA-1:exon:5766;Parent=Msa0539270-mRNA-1 |
| chr4_1 | exon | 20029983 | 20030096 | 20029983 | ID=Msa0539270-mRNA-1:exon:5767;Parent=Msa0539270-mRNA-1 |
| chr4_1 | exon | 20030208 | 20030295 | 20030208 | ID=Msa0539270-mRNA-1:exon:5768;Parent=Msa0539270-mRNA-1 |
| chr4_1 | exon | 20030391 | 20030486 | 20030391 | ID=Msa0539270-mRNA-1:exon:5769;Parent=Msa0539270-mRNA-1 |
| chr4_1 | exon | 20031380 | 20031872 | 20031380 | ID=Msa0539270-mRNA-1:exon:5770;Parent=Msa0539270-mRNA-1 |
| chr4_1 | five_prime_UTR | 20026102 | 20026245 | 20026102 | ID=Msa0539270-mRNA-1:five_prime_utr;Parent=Msa0539270-mRNA-1 |
| chr4_1 | CDS | 20026246 | 20026572 | 20026246 | ID=Msa0539270-mRNA-1:cds;Parent=Msa0539270-mRNA-1 |
| chr4_1 | CDS | 20027816 | 20027887 | 20027816 | ID=Msa0539270-mRNA-1:cds;Parent=Msa0539270-mRNA-1 |
| chr4_1 | CDS | 20028012 | 20028092 | 20028012 | ID=Msa0539270-mRNA-1:cds;Parent=Msa0539270-mRNA-1 |
| chr4_1 | CDS | 20028259 | 20028429 | 20028259 | ID=Msa0539270-mRNA-1:cds;Parent=Msa0539270-mRNA-1 |
| chr4_1 | CDS | 20028496 | 20028564 | 20028496 | ID=Msa0539270-mRNA-1:cds;Parent=Msa0539270-mRNA-1 |
| chr4_1 | CDS | 20028776 | 20028862 | 20028776 | ID=Msa0539270-mRNA-1:cds;Parent=Msa0539270-mRNA-1 |
| chr4_1 | CDS | 20028987 | 20029085 | 20028987 | ID=Msa0539270-mRNA-1:cds;Parent=Msa0539270-mRNA-1 |
| chr4_1 | CDS | 20029172 | 20029255 | 20029172 | ID=Msa0539270-mRNA-1:cds;Parent=Msa0539270-mRNA-1 |
| chr4_1 | CDS | 20029592 | 20029678 | 20029592 | ID=Msa0539270-mRNA-1:cds;Parent=Msa0539270-mRNA-1 |
| chr4_1 | CDS | 20029831 | 20029902 | 20029831 | ID=Msa0539270-mRNA-1:cds;Parent=Msa0539270-mRNA-1 |
| chr4_1 | CDS | 20029983 | 20030096 | 20029983 | ID=Msa0539270-mRNA-1:cds;Parent=Msa0539270-mRNA-1 |
| chr4_1 | CDS | 20030208 | 20030295 | 20030208 | ID=Msa0539270-mRNA-1:cds;Parent=Msa0539270-mRNA-1 |
| chr4_1 | CDS | 20030391 | 20030486 | 20030391 | ID=Msa0539270-mRNA-1:cds;Parent=Msa0539270-mRNA-1 |
| chr4_1 | CDS | 20031380 | 20031561 | 20031380 | ID=Msa0539270-mRNA-1:cds;Parent=Msa0539270-mRNA-1 |
| chr4_1 | three_prime_UTR | 20031562 | 20031872 | 20031562 | ID=Msa0539270-mRNA-1:three_prime_utr;Parent=Msa0539270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
