Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0540110 | XP_024636225.1 | 85.827 | 254 | 36 | 0 | 1 | 254 | 1 | 254 | 1.73e-157 | 447 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0540110 | sp|Q9FHE4|BRG1_ARATH | 29.348 | 184 | 106 | 6 | 76 | 240 | 104 | 282 | 1.45e-13 | 72.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0540110 | A0A396I2E1 | 85.827 | 254 | 36 | 0 | 1 | 254 | 1 | 254 | 8.28e-158 | 447 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0540110 | Msa0540150 | 0.881855 | 1.695808e-70 | -8.615850e-47 |
| Msa0540110 | Msa0674670 | 0.959399 | 2.123704e-117 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0540110 | MtrunA17_Chr4g0017931 | 85.827 | 254 | 36 | 0 | 1 | 254 | 1 | 254 | 1.60e-161 | 447 |
| Msa0540110 | MtrunA17_Chr4g0017891 | 70.472 | 254 | 75 | 0 | 1 | 254 | 1 | 254 | 9.33e-119 | 339 |
| Msa0540110 | MtrunA17_Chr2g0311321 | 78.539 | 219 | 47 | 0 | 1 | 219 | 1 | 219 | 1.24e-108 | 313 |
| Msa0540110 | MtrunA17_Chr4g0036941 | 55.212 | 259 | 103 | 3 | 1 | 252 | 3 | 255 | 1.36e-86 | 258 |
| Msa0540110 | MtrunA17_Chr2g0319361 | 53.462 | 260 | 107 | 2 | 1 | 252 | 1 | 254 | 4.35e-80 | 241 |
| Msa0540110 | MtrunA17_Chr4g0050301 | 58.784 | 148 | 60 | 1 | 105 | 252 | 14 | 160 | 3.45e-55 | 174 |
| Msa0540110 | MtrunA17_Chr3g0145641 | 36.047 | 172 | 95 | 5 | 80 | 247 | 19 | 179 | 3.88e-27 | 103 |
| Msa0540110 | MtrunA17_Chr4g0018631 | 31.500 | 200 | 122 | 4 | 59 | 247 | 13 | 208 | 3.96e-26 | 101 |
| Msa0540110 | MtrunA17_Chr2g0291661 | 25.131 | 191 | 121 | 4 | 78 | 248 | 128 | 316 | 2.82e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0540110 | AT4G35070.1 | 35.106 | 188 | 100 | 5 | 78 | 247 | 78 | 261 | 1.12e-22 | 94.0 |
| Msa0540110 | AT4G35070.2 | 34.574 | 188 | 101 | 5 | 78 | 247 | 23 | 206 | 2.37e-22 | 92.0 |
Find 42 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATCAGTTCATCAATAATA+AGG | 0.345168 | 4_1:+21662475 | Msa0540110:CDS |
| AGAATTTGACAAAATACTTA+AGG | 0.385423 | 4_1:+21662879 | Msa0540110:CDS |
| TGAAACTTGGACATGAGAAT+TGG | 0.392838 | 4_1:-21662396 | None:intergenic |
| TGTGGTTGTTGTAGTTCAAT+AGG | 0.393104 | 4_1:-21662320 | None:intergenic |
| GGTAATCATGGATTTCCTTT+CGG | 0.398155 | 4_1:+21662239 | Msa0540110:CDS |
| GGATTTCCTTTCGGCATCAA+TGG | 0.413294 | 4_1:+21662248 | Msa0540110:CDS |
| AACTTAAGATGCTTGAAACT+TGG | 0.421911 | 4_1:-21662409 | None:intergenic |
| TATTATGTCGGTGGAATCGC+AGG | 0.448522 | 4_1:+21662272 | Msa0540110:CDS |
| CTCGAAGCTTGTCCAATATG+TGG | 0.453869 | 4_1:+21663141 | Msa0540110:CDS |
| CCACACTCTCATGGTAATCA+TGG | 0.454463 | 4_1:+21662227 | Msa0540110:CDS |
| ACAAAATCAACAACAGTGGC+AGG | 0.458608 | 4_1:+21662355 | Msa0540110:CDS |
| TGACAAAATACTTAAGGAAA+GGG | 0.461383 | 4_1:+21662885 | Msa0540110:CDS |
| TGCAAAGAAAACACAGGAGT+TGG | 0.462584 | 4_1:+21662822 | Msa0540110:CDS |
| TGTTGTAGTTCAATAGGTTG+TGG | 0.475374 | 4_1:-21662314 | None:intergenic |
| GGCATCAATGGTTATTATGT+CGG | 0.476149 | 4_1:+21662260 | Msa0540110:CDS |
| TTGGACATGAGAATTGGAAA+AGG | 0.476885 | 4_1:-21662390 | None:intergenic |
| AATAACTTTGCATAACAAGT+TGG | 0.490355 | 4_1:+21662918 | Msa0540110:CDS |
| CACGAAGAAAGATGCATACA+TGG | 0.512767 | 4_1:-21663099 | None:intergenic |
| TTGACAAAATACTTAAGGAA+AGG | 0.515941 | 4_1:+21662884 | Msa0540110:CDS |
| TTTCTCAAATAGAGAATCAA+AGG | 0.518811 | 4_1:-21662438 | None:intergenic |
| GCTGCTACAACAACATCAAA+GGG | 0.527548 | 4_1:+21662741 | Msa0540110:CDS |
| TGGACATGAGAATTGGAAAA+GGG | 0.534112 | 4_1:-21662389 | None:intergenic |
| TGCTGCTACAACAACATCAA+AGG | 0.534305 | 4_1:+21662740 | Msa0540110:CDS |
| GCTTACTTCTTCGCTTTCAC+CGG | 0.535160 | 4_1:-21662995 | None:intergenic |
| ACAAATGATGATAATAAAGA+AGG | 0.542335 | 4_1:+21662783 | Msa0540110:CDS |
| TTTGCATAACAAGTTGGAAG+AGG | 0.544284 | 4_1:+21662924 | Msa0540110:CDS |
| AAGTGTAACACAAAATCCTC+AGG | 0.567006 | 4_1:+21663063 | Msa0540110:CDS |
| AATGATGCAAAATCATCTAC+CGG | 0.567540 | 4_1:+21662976 | Msa0540110:CDS |
| AAATCTCGTAAGAAGAATTG+AGG | 0.584045 | 4_1:+21662846 | Msa0540110:CDS |
| ATCATGCAACCACACTCTCA+TGG | 0.584855 | 4_1:+21662218 | None:intergenic |
| TCAAATAGAGAATCAAAGGT+AGG | 0.589676 | 4_1:-21662434 | None:intergenic |
| TCTATTTGAGAAACAAGTCA+AGG | 0.602819 | 4_1:+21662448 | Msa0540110:CDS |
| TAATAACCATTGATGCCGAA+AGG | 0.608678 | 4_1:-21662254 | None:intergenic |
| CTTGAAAAGCATGTCAGACG+TGG | 0.625187 | 4_1:+21663018 | Msa0540110:CDS |
| ATCAATGGTTATTATGTCGG+TGG | 0.625897 | 4_1:+21662263 | Msa0540110:CDS |
| CAAAATCAACAACAGTGGCA+GGG | 0.642850 | 4_1:+21662356 | Msa0540110:CDS |
| AAAAGTTGCAAAGAAAACAC+AGG | 0.671968 | 4_1:+21662816 | Msa0540110:CDS |
| ATTATGTCGGTGGAATCGCA+GGG | 0.686770 | 4_1:+21662273 | Msa0540110:CDS |
| AATTGGAAAAGGGAACAACA+TGG | 0.691856 | 4_1:-21662379 | None:intergenic |
| CCATGATTACCATGAGAGTG+TGG | 0.696444 | 4_1:-21662227 | None:intergenic |
| AACCACAAAATCAACAACAG+TGG | 0.702825 | 4_1:+21662351 | Msa0540110:CDS |
| TGGCATAAATAAGACACCTG+AGG | 0.722061 | 4_1:-21663079 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCAGTTCATCAATAATA+AGG | + | chr4_1:21662475-21662494 | Msa0540110:CDS | 20.0% |
| !!! | TATCAATTCATACATCTTTT+AGG | + | chr4_1:21662625-21662644 | Msa0540110:intron | 20.0% |
| !! | ACAAATGATGATAATAAAGA+AGG | + | chr4_1:21662783-21662802 | Msa0540110:CDS | 20.0% |
| !! | AGAATTTGACAAAATACTTA+AGG | + | chr4_1:21662879-21662898 | Msa0540110:CDS | 20.0% |
| !! | AAATCAGTTCATCAATAATA+AGG | + | chr4_1:21662475-21662494 | Msa0540110:CDS | 20.0% |
| !!! | TATCAATTCATACATCTTTT+AGG | + | chr4_1:21662625-21662644 | Msa0540110:intron | 20.0% |
| !! | ACAAATGATGATAATAAAGA+AGG | + | chr4_1:21662783-21662802 | Msa0540110:CDS | 20.0% |
| !! | AGAATTTGACAAAATACTTA+AGG | + | chr4_1:21662879-21662898 | Msa0540110:CDS | 20.0% |
| ! | TTTCTCAAATAGAGAATCAA+AGG | - | chr4_1:21662441-21662460 | None:intergenic | 25.0% |
| ! | TTGACAAAATACTTAAGGAA+AGG | + | chr4_1:21662884-21662903 | Msa0540110:CDS | 25.0% |
| ! | TGACAAAATACTTAAGGAAA+GGG | + | chr4_1:21662885-21662904 | Msa0540110:CDS | 25.0% |
| ! | AATAACTTTGCATAACAAGT+TGG | + | chr4_1:21662918-21662937 | Msa0540110:CDS | 25.0% |
| !!! | TTCTTTTTCATTCCACATAT+TGG | - | chr4_1:21663156-21663175 | None:intergenic | 25.0% |
| ! | AATATGTGGAATGAAAAAGA+AGG | + | chr4_1:21663155-21663174 | Msa0540110:CDS | 25.0% |
| ! | ATATGTGGAATGAAAAAGAA+GGG | + | chr4_1:21663156-21663175 | Msa0540110:CDS | 25.0% |
| ! | TTTCTCAAATAGAGAATCAA+AGG | - | chr4_1:21662441-21662460 | None:intergenic | 25.0% |
| ! | TTGACAAAATACTTAAGGAA+AGG | + | chr4_1:21662884-21662903 | Msa0540110:CDS | 25.0% |
| ! | TGACAAAATACTTAAGGAAA+GGG | + | chr4_1:21662885-21662904 | Msa0540110:CDS | 25.0% |
| ! | AATAACTTTGCATAACAAGT+TGG | + | chr4_1:21662918-21662937 | Msa0540110:CDS | 25.0% |
| !!! | TTCTTTTTCATTCCACATAT+TGG | - | chr4_1:21663156-21663175 | None:intergenic | 25.0% |
| ! | AATATGTGGAATGAAAAAGA+AGG | + | chr4_1:21663155-21663174 | Msa0540110:CDS | 25.0% |
| ! | ATATGTGGAATGAAAAAGAA+GGG | + | chr4_1:21663156-21663175 | Msa0540110:CDS | 25.0% |
| !!! | TTTTGTGGTTGATGATATTG+TGG | - | chr4_1:21662341-21662360 | None:intergenic | 30.0% |
| AACTTAAGATGCTTGAAACT+TGG | - | chr4_1:21662412-21662431 | None:intergenic | 30.0% | |
| TCAAATAGAGAATCAAAGGT+AGG | - | chr4_1:21662437-21662456 | None:intergenic | 30.0% | |
| TCTATTTGAGAAACAAGTCA+AGG | + | chr4_1:21662448-21662467 | Msa0540110:CDS | 30.0% | |
| AAAAGTTGCAAAGAAAACAC+AGG | + | chr4_1:21662816-21662835 | Msa0540110:CDS | 30.0% | |
| AAATCTCGTAAGAAGAATTG+AGG | + | chr4_1:21662846-21662865 | Msa0540110:CDS | 30.0% | |
| AATGATGCAAAATCATCTAC+CGG | + | chr4_1:21662976-21662995 | Msa0540110:CDS | 30.0% | |
| !!! | TTTTGTGGTTGATGATATTG+TGG | - | chr4_1:21662341-21662360 | None:intergenic | 30.0% |
| AACTTAAGATGCTTGAAACT+TGG | - | chr4_1:21662412-21662431 | None:intergenic | 30.0% | |
| TCAAATAGAGAATCAAAGGT+AGG | - | chr4_1:21662437-21662456 | None:intergenic | 30.0% | |
| TCTATTTGAGAAACAAGTCA+AGG | + | chr4_1:21662448-21662467 | Msa0540110:CDS | 30.0% | |
| AAAAGTTGCAAAGAAAACAC+AGG | + | chr4_1:21662816-21662835 | Msa0540110:CDS | 30.0% | |
| AAATCTCGTAAGAAGAATTG+AGG | + | chr4_1:21662846-21662865 | Msa0540110:CDS | 30.0% | |
| AATGATGCAAAATCATCTAC+CGG | + | chr4_1:21662976-21662995 | Msa0540110:CDS | 30.0% | |
| GGTAATCATGGATTTCCTTT+CGG | + | chr4_1:21662239-21662258 | Msa0540110:CDS | 35.0% | |
| TAATAACCATTGATGCCGAA+AGG | - | chr4_1:21662257-21662276 | None:intergenic | 35.0% | |
| GGCATCAATGGTTATTATGT+CGG | + | chr4_1:21662260-21662279 | Msa0540110:CDS | 35.0% | |
| ATCAATGGTTATTATGTCGG+TGG | + | chr4_1:21662263-21662282 | Msa0540110:CDS | 35.0% | |
| TGTTGTAGTTCAATAGGTTG+TGG | - | chr4_1:21662317-21662336 | None:intergenic | 35.0% | |
| TGTGGTTGTTGTAGTTCAAT+AGG | - | chr4_1:21662323-21662342 | None:intergenic | 35.0% | |
| AACCACAAAATCAACAACAG+TGG | + | chr4_1:21662351-21662370 | Msa0540110:CDS | 35.0% | |
| AATTGGAAAAGGGAACAACA+TGG | - | chr4_1:21662382-21662401 | None:intergenic | 35.0% | |
| TGGACATGAGAATTGGAAAA+GGG | - | chr4_1:21662392-21662411 | None:intergenic | 35.0% | |
| TTGGACATGAGAATTGGAAA+AGG | - | chr4_1:21662393-21662412 | None:intergenic | 35.0% | |
| TGAAACTTGGACATGAGAAT+TGG | - | chr4_1:21662399-21662418 | None:intergenic | 35.0% | |
| ! | TTTGCATAACAAGTTGGAAG+AGG | + | chr4_1:21662924-21662943 | Msa0540110:CDS | 35.0% |
| ! | GAGGATTTTGTGTTACACTT+GGG | - | chr4_1:21663063-21663082 | None:intergenic | 35.0% |
| ! | TGAGGATTTTGTGTTACACT+TGG | - | chr4_1:21663064-21663083 | None:intergenic | 35.0% |
| AAGTGTAACACAAAATCCTC+AGG | + | chr4_1:21663063-21663082 | Msa0540110:CDS | 35.0% | |
| GGTAATCATGGATTTCCTTT+CGG | + | chr4_1:21662239-21662258 | Msa0540110:CDS | 35.0% | |
| TAATAACCATTGATGCCGAA+AGG | - | chr4_1:21662257-21662276 | None:intergenic | 35.0% | |
| GGCATCAATGGTTATTATGT+CGG | + | chr4_1:21662260-21662279 | Msa0540110:CDS | 35.0% | |
| ATCAATGGTTATTATGTCGG+TGG | + | chr4_1:21662263-21662282 | Msa0540110:CDS | 35.0% | |
| TGTTGTAGTTCAATAGGTTG+TGG | - | chr4_1:21662317-21662336 | None:intergenic | 35.0% | |
| TGTGGTTGTTGTAGTTCAAT+AGG | - | chr4_1:21662323-21662342 | None:intergenic | 35.0% | |
| AACCACAAAATCAACAACAG+TGG | + | chr4_1:21662351-21662370 | Msa0540110:CDS | 35.0% | |
| AATTGGAAAAGGGAACAACA+TGG | - | chr4_1:21662382-21662401 | None:intergenic | 35.0% | |
| TGGACATGAGAATTGGAAAA+GGG | - | chr4_1:21662392-21662411 | None:intergenic | 35.0% | |
| TTGGACATGAGAATTGGAAA+AGG | - | chr4_1:21662393-21662412 | None:intergenic | 35.0% | |
| TGAAACTTGGACATGAGAAT+TGG | - | chr4_1:21662399-21662418 | None:intergenic | 35.0% | |
| ! | TTTGCATAACAAGTTGGAAG+AGG | + | chr4_1:21662924-21662943 | Msa0540110:CDS | 35.0% |
| ! | GAGGATTTTGTGTTACACTT+GGG | - | chr4_1:21663063-21663082 | None:intergenic | 35.0% |
| ! | TGAGGATTTTGTGTTACACT+TGG | - | chr4_1:21663064-21663083 | None:intergenic | 35.0% |
| AAGTGTAACACAAAATCCTC+AGG | + | chr4_1:21663063-21663082 | Msa0540110:CDS | 35.0% | |
| !!! | TGCCACTGTTGTTGATTTTG+TGG | - | chr4_1:21662356-21662375 | None:intergenic | 40.0% |
| ACAAAATCAACAACAGTGGC+AGG | + | chr4_1:21662355-21662374 | Msa0540110:CDS | 40.0% | |
| CAAAATCAACAACAGTGGCA+GGG | + | chr4_1:21662356-21662375 | Msa0540110:CDS | 40.0% | |
| TCTCCCTGTGATAGAATCTT+TGG | + | chr4_1:21662597-21662616 | Msa0540110:intron | 40.0% | |
| CTCCCTGTGATAGAATCTTT+GGG | + | chr4_1:21662598-21662617 | Msa0540110:intron | 40.0% | |
| CTCCCAAAGATTCTATCACA+GGG | - | chr4_1:21662603-21662622 | None:intergenic | 40.0% | |
| TGCTGCTACAACAACATCAA+AGG | + | chr4_1:21662740-21662759 | Msa0540110:CDS | 40.0% | |
| GCTGCTACAACAACATCAAA+GGG | + | chr4_1:21662741-21662760 | Msa0540110:CDS | 40.0% | |
| TGCAAAGAAAACACAGGAGT+TGG | + | chr4_1:21662822-21662841 | Msa0540110:CDS | 40.0% | |
| TGGCATAAATAAGACACCTG+AGG | - | chr4_1:21663082-21663101 | None:intergenic | 40.0% | |
| CACGAAGAAAGATGCATACA+TGG | - | chr4_1:21663102-21663121 | None:intergenic | 40.0% | |
| !!! | TGCCACTGTTGTTGATTTTG+TGG | - | chr4_1:21662356-21662375 | None:intergenic | 40.0% |
| ACAAAATCAACAACAGTGGC+AGG | + | chr4_1:21662355-21662374 | Msa0540110:CDS | 40.0% | |
| CAAAATCAACAACAGTGGCA+GGG | + | chr4_1:21662356-21662375 | Msa0540110:CDS | 40.0% | |
| TCTCCCTGTGATAGAATCTT+TGG | + | chr4_1:21662597-21662616 | Msa0540110:intron | 40.0% | |
| CTCCCTGTGATAGAATCTTT+GGG | + | chr4_1:21662598-21662617 | Msa0540110:intron | 40.0% | |
| CTCCCAAAGATTCTATCACA+GGG | - | chr4_1:21662603-21662622 | None:intergenic | 40.0% | |
| TGCTGCTACAACAACATCAA+AGG | + | chr4_1:21662740-21662759 | Msa0540110:CDS | 40.0% | |
| GCTGCTACAACAACATCAAA+GGG | + | chr4_1:21662741-21662760 | Msa0540110:CDS | 40.0% | |
| TGCAAAGAAAACACAGGAGT+TGG | + | chr4_1:21662822-21662841 | Msa0540110:CDS | 40.0% | |
| TGGCATAAATAAGACACCTG+AGG | - | chr4_1:21663082-21663101 | None:intergenic | 40.0% | |
| CACGAAGAAAGATGCATACA+TGG | - | chr4_1:21663102-21663121 | None:intergenic | 40.0% | |
| CCATGATTACCATGAGAGTG+TGG | - | chr4_1:21662230-21662249 | None:intergenic | 45.0% | |
| CCACACTCTCATGGTAATCA+TGG | + | chr4_1:21662227-21662246 | Msa0540110:CDS | 45.0% | |
| GGATTTCCTTTCGGCATCAA+TGG | + | chr4_1:21662248-21662267 | Msa0540110:CDS | 45.0% | |
| TATTATGTCGGTGGAATCGC+AGG | + | chr4_1:21662272-21662291 | Msa0540110:CDS | 45.0% | |
| ATTATGTCGGTGGAATCGCA+GGG | + | chr4_1:21662273-21662292 | Msa0540110:CDS | 45.0% | |
| CCTCCCAAAGATTCTATCAC+AGG | - | chr4_1:21662604-21662623 | None:intergenic | 45.0% | |
| CCTGTGATAGAATCTTTGGG+AGG | + | chr4_1:21662601-21662620 | Msa0540110:intron | 45.0% | |
| GCTTACTTCTTCGCTTTCAC+CGG | - | chr4_1:21662998-21663017 | None:intergenic | 45.0% | |
| ! | CACGTCTGACATGCTTTTCA+AGG | - | chr4_1:21663020-21663039 | None:intergenic | 45.0% |
| ! | CTTGAAAAGCATGTCAGACG+TGG | + | chr4_1:21663018-21663037 | Msa0540110:CDS | 45.0% |
| CTCGAAGCTTGTCCAATATG+TGG | + | chr4_1:21663141-21663160 | Msa0540110:CDS | 45.0% | |
| CCATGATTACCATGAGAGTG+TGG | - | chr4_1:21662230-21662249 | None:intergenic | 45.0% | |
| CCACACTCTCATGGTAATCA+TGG | + | chr4_1:21662227-21662246 | Msa0540110:CDS | 45.0% | |
| GGATTTCCTTTCGGCATCAA+TGG | + | chr4_1:21662248-21662267 | Msa0540110:CDS | 45.0% | |
| TATTATGTCGGTGGAATCGC+AGG | + | chr4_1:21662272-21662291 | Msa0540110:CDS | 45.0% | |
| ATTATGTCGGTGGAATCGCA+GGG | + | chr4_1:21662273-21662292 | Msa0540110:CDS | 45.0% | |
| CCTCCCAAAGATTCTATCAC+AGG | - | chr4_1:21662604-21662623 | None:intergenic | 45.0% | |
| CCTGTGATAGAATCTTTGGG+AGG | + | chr4_1:21662601-21662620 | Msa0540110:intron | 45.0% | |
| GCTTACTTCTTCGCTTTCAC+CGG | - | chr4_1:21662998-21663017 | None:intergenic | 45.0% | |
| ! | CACGTCTGACATGCTTTTCA+AGG | - | chr4_1:21663020-21663039 | None:intergenic | 45.0% |
| ! | CTTGAAAAGCATGTCAGACG+TGG | + | chr4_1:21663018-21663037 | Msa0540110:CDS | 45.0% |
| CTCGAAGCTTGTCCAATATG+TGG | + | chr4_1:21663141-21663160 | Msa0540110:CDS | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 21662221 | 21663212 | 21662221 | ID=Msa0540110;Name=Msa0540110 |
| chr4_1 | mRNA | 21662221 | 21663212 | 21662221 | ID=Msa0540110-mRNA-1;Parent=Msa0540110;Name=Msa0540110-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0|1|1|1|2|0|254 |
| chr4_1 | exon | 21662221 | 21662496 | 21662221 | ID=Msa0540110-mRNA-1:exon:6146;Parent=Msa0540110-mRNA-1 |
| chr4_1 | exon | 21662724 | 21663212 | 21662724 | ID=Msa0540110-mRNA-1:exon:6147;Parent=Msa0540110-mRNA-1 |
| chr4_1 | CDS | 21662221 | 21662496 | 21662221 | ID=Msa0540110-mRNA-1:cds;Parent=Msa0540110-mRNA-1 |
| chr4_1 | CDS | 21662724 | 21663212 | 21662724 | ID=Msa0540110-mRNA-1:cds;Parent=Msa0540110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
