Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0540150 | XP_024636225.1 | 85.827 | 254 | 36 | 0 | 1 | 254 | 1 | 254 | 1.73e-157 | 447 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0540150 | sp|Q9FHE4|BRG1_ARATH | 29.348 | 184 | 106 | 6 | 76 | 240 | 104 | 282 | 1.45e-13 | 72.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0540150 | A0A396I2E1 | 85.827 | 254 | 36 | 0 | 1 | 254 | 1 | 254 | 8.28e-158 | 447 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0540110 | Msa0540150 | 0.881855 | 1.695808e-70 | -8.615850e-47 |
| Msa0540150 | Msa0674670 | 0.885746 | 6.235285e-72 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0540150 | MtrunA17_Chr4g0017931 | 85.827 | 254 | 36 | 0 | 1 | 254 | 1 | 254 | 1.60e-161 | 447 |
| Msa0540150 | MtrunA17_Chr4g0017891 | 70.472 | 254 | 75 | 0 | 1 | 254 | 1 | 254 | 9.33e-119 | 339 |
| Msa0540150 | MtrunA17_Chr2g0311321 | 78.539 | 219 | 47 | 0 | 1 | 219 | 1 | 219 | 1.24e-108 | 313 |
| Msa0540150 | MtrunA17_Chr4g0036941 | 55.212 | 259 | 103 | 3 | 1 | 252 | 3 | 255 | 1.36e-86 | 258 |
| Msa0540150 | MtrunA17_Chr2g0319361 | 53.462 | 260 | 107 | 2 | 1 | 252 | 1 | 254 | 4.35e-80 | 241 |
| Msa0540150 | MtrunA17_Chr4g0050301 | 58.784 | 148 | 60 | 1 | 105 | 252 | 14 | 160 | 3.45e-55 | 174 |
| Msa0540150 | MtrunA17_Chr3g0145641 | 36.047 | 172 | 95 | 5 | 80 | 247 | 19 | 179 | 3.88e-27 | 103 |
| Msa0540150 | MtrunA17_Chr4g0018631 | 31.500 | 200 | 122 | 4 | 59 | 247 | 13 | 208 | 3.96e-26 | 101 |
| Msa0540150 | MtrunA17_Chr2g0291661 | 25.131 | 191 | 121 | 4 | 78 | 248 | 128 | 316 | 2.82e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0540150 | AT4G35070.1 | 35.106 | 188 | 100 | 5 | 78 | 247 | 78 | 261 | 1.12e-22 | 94.0 |
| Msa0540150 | AT4G35070.2 | 34.574 | 188 | 101 | 5 | 78 | 247 | 23 | 206 | 2.37e-22 | 92.0 |
Find 42 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATCAGTTCATCAATAATA+AGG | 0.345168 | 4_1:+21778847 | Msa0540150:CDS |
| AGAATTTGACAAAATACTTA+AGG | 0.385423 | 4_1:+21779251 | Msa0540150:CDS |
| TGAAACTTGGACATGAGAAT+TGG | 0.392838 | 4_1:-21778768 | None:intergenic |
| TGTGGTTGTTGTAGTTCAAT+AGG | 0.393104 | 4_1:-21778692 | None:intergenic |
| GGTAATCATGGATTTCCTTT+CGG | 0.398155 | 4_1:+21778611 | Msa0540150:CDS |
| GGATTTCCTTTCGGCATCAA+TGG | 0.413294 | 4_1:+21778620 | Msa0540150:CDS |
| AACTTAAGATGCTTGAAACT+TGG | 0.421911 | 4_1:-21778781 | None:intergenic |
| TATTATGTCGGTGGAATCGC+AGG | 0.448522 | 4_1:+21778644 | Msa0540150:CDS |
| CTCGAAGCTTGTCCAATATG+TGG | 0.453869 | 4_1:+21779513 | Msa0540150:CDS |
| CCACACTCTCATGGTAATCA+TGG | 0.454463 | 4_1:+21778599 | Msa0540150:CDS |
| ACAAAATCAACAACAGTGGC+AGG | 0.458608 | 4_1:+21778727 | Msa0540150:CDS |
| TGACAAAATACTTAAGGAAA+GGG | 0.461383 | 4_1:+21779257 | Msa0540150:CDS |
| TGCAAAGAAAACACAGGAGT+TGG | 0.462584 | 4_1:+21779194 | Msa0540150:CDS |
| TGTTGTAGTTCAATAGGTTG+TGG | 0.475374 | 4_1:-21778686 | None:intergenic |
| GGCATCAATGGTTATTATGT+CGG | 0.476149 | 4_1:+21778632 | Msa0540150:CDS |
| TTGGACATGAGAATTGGAAA+AGG | 0.476885 | 4_1:-21778762 | None:intergenic |
| AATAACTTTGCATAACAAGT+TGG | 0.490355 | 4_1:+21779290 | Msa0540150:CDS |
| CACGAAGAAAGATGCATACA+TGG | 0.512767 | 4_1:-21779471 | None:intergenic |
| TTGACAAAATACTTAAGGAA+AGG | 0.515941 | 4_1:+21779256 | Msa0540150:CDS |
| TTTCTCAAATAGAGAATCAA+AGG | 0.518811 | 4_1:-21778810 | None:intergenic |
| GCTGCTACAACAACATCAAA+GGG | 0.527548 | 4_1:+21779113 | Msa0540150:CDS |
| TGGACATGAGAATTGGAAAA+GGG | 0.534112 | 4_1:-21778761 | None:intergenic |
| TGCTGCTACAACAACATCAA+AGG | 0.534305 | 4_1:+21779112 | Msa0540150:CDS |
| GCTTACTTCTTCGCTTTCAC+CGG | 0.535160 | 4_1:-21779367 | None:intergenic |
| ACAAATGATGATAATAAAGA+AGG | 0.542335 | 4_1:+21779155 | Msa0540150:CDS |
| TTTGCATAACAAGTTGGAAG+AGG | 0.544284 | 4_1:+21779296 | Msa0540150:CDS |
| AAGTGTAACACAAAATCCTC+AGG | 0.567006 | 4_1:+21779435 | Msa0540150:CDS |
| AATGATGCAAAATCATCTAC+CGG | 0.567540 | 4_1:+21779348 | Msa0540150:CDS |
| AAATCTCGTAAGAAGAATTG+AGG | 0.584045 | 4_1:+21779218 | Msa0540150:CDS |
| ATCATGCAACCACACTCTCA+TGG | 0.584855 | 4_1:+21778590 | None:intergenic |
| TCAAATAGAGAATCAAAGGT+AGG | 0.589676 | 4_1:-21778806 | None:intergenic |
| TCTATTTGAGAAACAAGTCA+AGG | 0.602819 | 4_1:+21778820 | Msa0540150:CDS |
| TAATAACCATTGATGCCGAA+AGG | 0.608678 | 4_1:-21778626 | None:intergenic |
| CTTGAAAAGCATGTCAGACG+TGG | 0.625187 | 4_1:+21779390 | Msa0540150:CDS |
| ATCAATGGTTATTATGTCGG+TGG | 0.625897 | 4_1:+21778635 | Msa0540150:CDS |
| CAAAATCAACAACAGTGGCA+GGG | 0.642850 | 4_1:+21778728 | Msa0540150:CDS |
| AAAAGTTGCAAAGAAAACAC+AGG | 0.671968 | 4_1:+21779188 | Msa0540150:CDS |
| ATTATGTCGGTGGAATCGCA+GGG | 0.686770 | 4_1:+21778645 | Msa0540150:CDS |
| AATTGGAAAAGGGAACAACA+TGG | 0.691856 | 4_1:-21778751 | None:intergenic |
| CCATGATTACCATGAGAGTG+TGG | 0.696444 | 4_1:-21778599 | None:intergenic |
| AACCACAAAATCAACAACAG+TGG | 0.702825 | 4_1:+21778723 | Msa0540150:CDS |
| TGGCATAAATAAGACACCTG+AGG | 0.722061 | 4_1:-21779451 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCAGTTCATCAATAATA+AGG | + | chr4_1:21778847-21778866 | Msa0540150:CDS | 20.0% |
| !!! | TATCAATTCATACATCTTTT+AGG | + | chr4_1:21778997-21779016 | Msa0540150:intron | 20.0% |
| !! | ACAAATGATGATAATAAAGA+AGG | + | chr4_1:21779155-21779174 | Msa0540150:CDS | 20.0% |
| !! | AGAATTTGACAAAATACTTA+AGG | + | chr4_1:21779251-21779270 | Msa0540150:CDS | 20.0% |
| !! | AAATCAGTTCATCAATAATA+AGG | + | chr4_1:21778847-21778866 | Msa0540150:CDS | 20.0% |
| !!! | TATCAATTCATACATCTTTT+AGG | + | chr4_1:21778997-21779016 | Msa0540150:intron | 20.0% |
| !! | ACAAATGATGATAATAAAGA+AGG | + | chr4_1:21779155-21779174 | Msa0540150:CDS | 20.0% |
| !! | AGAATTTGACAAAATACTTA+AGG | + | chr4_1:21779251-21779270 | Msa0540150:CDS | 20.0% |
| ! | TTTCTCAAATAGAGAATCAA+AGG | - | chr4_1:21778813-21778832 | None:intergenic | 25.0% |
| ! | TTGACAAAATACTTAAGGAA+AGG | + | chr4_1:21779256-21779275 | Msa0540150:CDS | 25.0% |
| ! | TGACAAAATACTTAAGGAAA+GGG | + | chr4_1:21779257-21779276 | Msa0540150:CDS | 25.0% |
| ! | AATAACTTTGCATAACAAGT+TGG | + | chr4_1:21779290-21779309 | Msa0540150:CDS | 25.0% |
| !!! | TTCTTTTTCATTCCACATAT+TGG | - | chr4_1:21779528-21779547 | None:intergenic | 25.0% |
| ! | AATATGTGGAATGAAAAAGA+AGG | + | chr4_1:21779527-21779546 | Msa0540150:CDS | 25.0% |
| ! | ATATGTGGAATGAAAAAGAA+GGG | + | chr4_1:21779528-21779547 | Msa0540150:CDS | 25.0% |
| ! | TTTCTCAAATAGAGAATCAA+AGG | - | chr4_1:21778813-21778832 | None:intergenic | 25.0% |
| ! | TTGACAAAATACTTAAGGAA+AGG | + | chr4_1:21779256-21779275 | Msa0540150:CDS | 25.0% |
| ! | TGACAAAATACTTAAGGAAA+GGG | + | chr4_1:21779257-21779276 | Msa0540150:CDS | 25.0% |
| ! | AATAACTTTGCATAACAAGT+TGG | + | chr4_1:21779290-21779309 | Msa0540150:CDS | 25.0% |
| !!! | TTCTTTTTCATTCCACATAT+TGG | - | chr4_1:21779528-21779547 | None:intergenic | 25.0% |
| ! | AATATGTGGAATGAAAAAGA+AGG | + | chr4_1:21779527-21779546 | Msa0540150:CDS | 25.0% |
| ! | ATATGTGGAATGAAAAAGAA+GGG | + | chr4_1:21779528-21779547 | Msa0540150:CDS | 25.0% |
| !!! | TTTTGTGGTTGATGATATTG+TGG | - | chr4_1:21778713-21778732 | None:intergenic | 30.0% |
| AACTTAAGATGCTTGAAACT+TGG | - | chr4_1:21778784-21778803 | None:intergenic | 30.0% | |
| TCAAATAGAGAATCAAAGGT+AGG | - | chr4_1:21778809-21778828 | None:intergenic | 30.0% | |
| TCTATTTGAGAAACAAGTCA+AGG | + | chr4_1:21778820-21778839 | Msa0540150:CDS | 30.0% | |
| AAAAGTTGCAAAGAAAACAC+AGG | + | chr4_1:21779188-21779207 | Msa0540150:CDS | 30.0% | |
| AAATCTCGTAAGAAGAATTG+AGG | + | chr4_1:21779218-21779237 | Msa0540150:CDS | 30.0% | |
| AATGATGCAAAATCATCTAC+CGG | + | chr4_1:21779348-21779367 | Msa0540150:CDS | 30.0% | |
| !!! | TTTTGTGGTTGATGATATTG+TGG | - | chr4_1:21778713-21778732 | None:intergenic | 30.0% |
| AACTTAAGATGCTTGAAACT+TGG | - | chr4_1:21778784-21778803 | None:intergenic | 30.0% | |
| TCAAATAGAGAATCAAAGGT+AGG | - | chr4_1:21778809-21778828 | None:intergenic | 30.0% | |
| TCTATTTGAGAAACAAGTCA+AGG | + | chr4_1:21778820-21778839 | Msa0540150:CDS | 30.0% | |
| AAAAGTTGCAAAGAAAACAC+AGG | + | chr4_1:21779188-21779207 | Msa0540150:CDS | 30.0% | |
| AAATCTCGTAAGAAGAATTG+AGG | + | chr4_1:21779218-21779237 | Msa0540150:CDS | 30.0% | |
| AATGATGCAAAATCATCTAC+CGG | + | chr4_1:21779348-21779367 | Msa0540150:CDS | 30.0% | |
| GGTAATCATGGATTTCCTTT+CGG | + | chr4_1:21778611-21778630 | Msa0540150:CDS | 35.0% | |
| TAATAACCATTGATGCCGAA+AGG | - | chr4_1:21778629-21778648 | None:intergenic | 35.0% | |
| GGCATCAATGGTTATTATGT+CGG | + | chr4_1:21778632-21778651 | Msa0540150:CDS | 35.0% | |
| ATCAATGGTTATTATGTCGG+TGG | + | chr4_1:21778635-21778654 | Msa0540150:CDS | 35.0% | |
| TGTTGTAGTTCAATAGGTTG+TGG | - | chr4_1:21778689-21778708 | None:intergenic | 35.0% | |
| TGTGGTTGTTGTAGTTCAAT+AGG | - | chr4_1:21778695-21778714 | None:intergenic | 35.0% | |
| AACCACAAAATCAACAACAG+TGG | + | chr4_1:21778723-21778742 | Msa0540150:CDS | 35.0% | |
| AATTGGAAAAGGGAACAACA+TGG | - | chr4_1:21778754-21778773 | None:intergenic | 35.0% | |
| TGGACATGAGAATTGGAAAA+GGG | - | chr4_1:21778764-21778783 | None:intergenic | 35.0% | |
| TTGGACATGAGAATTGGAAA+AGG | - | chr4_1:21778765-21778784 | None:intergenic | 35.0% | |
| TGAAACTTGGACATGAGAAT+TGG | - | chr4_1:21778771-21778790 | None:intergenic | 35.0% | |
| ! | TTTGCATAACAAGTTGGAAG+AGG | + | chr4_1:21779296-21779315 | Msa0540150:CDS | 35.0% |
| ! | GAGGATTTTGTGTTACACTT+GGG | - | chr4_1:21779435-21779454 | None:intergenic | 35.0% |
| ! | TGAGGATTTTGTGTTACACT+TGG | - | chr4_1:21779436-21779455 | None:intergenic | 35.0% |
| AAGTGTAACACAAAATCCTC+AGG | + | chr4_1:21779435-21779454 | Msa0540150:CDS | 35.0% | |
| GGTAATCATGGATTTCCTTT+CGG | + | chr4_1:21778611-21778630 | Msa0540150:CDS | 35.0% | |
| TAATAACCATTGATGCCGAA+AGG | - | chr4_1:21778629-21778648 | None:intergenic | 35.0% | |
| GGCATCAATGGTTATTATGT+CGG | + | chr4_1:21778632-21778651 | Msa0540150:CDS | 35.0% | |
| ATCAATGGTTATTATGTCGG+TGG | + | chr4_1:21778635-21778654 | Msa0540150:CDS | 35.0% | |
| TGTTGTAGTTCAATAGGTTG+TGG | - | chr4_1:21778689-21778708 | None:intergenic | 35.0% | |
| TGTGGTTGTTGTAGTTCAAT+AGG | - | chr4_1:21778695-21778714 | None:intergenic | 35.0% | |
| AACCACAAAATCAACAACAG+TGG | + | chr4_1:21778723-21778742 | Msa0540150:CDS | 35.0% | |
| AATTGGAAAAGGGAACAACA+TGG | - | chr4_1:21778754-21778773 | None:intergenic | 35.0% | |
| TGGACATGAGAATTGGAAAA+GGG | - | chr4_1:21778764-21778783 | None:intergenic | 35.0% | |
| TTGGACATGAGAATTGGAAA+AGG | - | chr4_1:21778765-21778784 | None:intergenic | 35.0% | |
| TGAAACTTGGACATGAGAAT+TGG | - | chr4_1:21778771-21778790 | None:intergenic | 35.0% | |
| ! | TTTGCATAACAAGTTGGAAG+AGG | + | chr4_1:21779296-21779315 | Msa0540150:CDS | 35.0% |
| ! | GAGGATTTTGTGTTACACTT+GGG | - | chr4_1:21779435-21779454 | None:intergenic | 35.0% |
| ! | TGAGGATTTTGTGTTACACT+TGG | - | chr4_1:21779436-21779455 | None:intergenic | 35.0% |
| AAGTGTAACACAAAATCCTC+AGG | + | chr4_1:21779435-21779454 | Msa0540150:CDS | 35.0% | |
| !!! | TGCCACTGTTGTTGATTTTG+TGG | - | chr4_1:21778728-21778747 | None:intergenic | 40.0% |
| ACAAAATCAACAACAGTGGC+AGG | + | chr4_1:21778727-21778746 | Msa0540150:CDS | 40.0% | |
| CAAAATCAACAACAGTGGCA+GGG | + | chr4_1:21778728-21778747 | Msa0540150:CDS | 40.0% | |
| TCTCCCTGTGATAGAATCTT+TGG | + | chr4_1:21778969-21778988 | Msa0540150:intron | 40.0% | |
| CTCCCTGTGATAGAATCTTT+GGG | + | chr4_1:21778970-21778989 | Msa0540150:intron | 40.0% | |
| CTCCCAAAGATTCTATCACA+GGG | - | chr4_1:21778975-21778994 | None:intergenic | 40.0% | |
| TGCTGCTACAACAACATCAA+AGG | + | chr4_1:21779112-21779131 | Msa0540150:CDS | 40.0% | |
| GCTGCTACAACAACATCAAA+GGG | + | chr4_1:21779113-21779132 | Msa0540150:CDS | 40.0% | |
| TGCAAAGAAAACACAGGAGT+TGG | + | chr4_1:21779194-21779213 | Msa0540150:CDS | 40.0% | |
| TGGCATAAATAAGACACCTG+AGG | - | chr4_1:21779454-21779473 | None:intergenic | 40.0% | |
| CACGAAGAAAGATGCATACA+TGG | - | chr4_1:21779474-21779493 | None:intergenic | 40.0% | |
| !!! | TGCCACTGTTGTTGATTTTG+TGG | - | chr4_1:21778728-21778747 | None:intergenic | 40.0% |
| ACAAAATCAACAACAGTGGC+AGG | + | chr4_1:21778727-21778746 | Msa0540150:CDS | 40.0% | |
| CAAAATCAACAACAGTGGCA+GGG | + | chr4_1:21778728-21778747 | Msa0540150:CDS | 40.0% | |
| TCTCCCTGTGATAGAATCTT+TGG | + | chr4_1:21778969-21778988 | Msa0540150:intron | 40.0% | |
| CTCCCTGTGATAGAATCTTT+GGG | + | chr4_1:21778970-21778989 | Msa0540150:intron | 40.0% | |
| CTCCCAAAGATTCTATCACA+GGG | - | chr4_1:21778975-21778994 | None:intergenic | 40.0% | |
| TGCTGCTACAACAACATCAA+AGG | + | chr4_1:21779112-21779131 | Msa0540150:CDS | 40.0% | |
| GCTGCTACAACAACATCAAA+GGG | + | chr4_1:21779113-21779132 | Msa0540150:CDS | 40.0% | |
| TGCAAAGAAAACACAGGAGT+TGG | + | chr4_1:21779194-21779213 | Msa0540150:CDS | 40.0% | |
| TGGCATAAATAAGACACCTG+AGG | - | chr4_1:21779454-21779473 | None:intergenic | 40.0% | |
| CACGAAGAAAGATGCATACA+TGG | - | chr4_1:21779474-21779493 | None:intergenic | 40.0% | |
| CCATGATTACCATGAGAGTG+TGG | - | chr4_1:21778602-21778621 | None:intergenic | 45.0% | |
| CCACACTCTCATGGTAATCA+TGG | + | chr4_1:21778599-21778618 | Msa0540150:CDS | 45.0% | |
| GGATTTCCTTTCGGCATCAA+TGG | + | chr4_1:21778620-21778639 | Msa0540150:CDS | 45.0% | |
| TATTATGTCGGTGGAATCGC+AGG | + | chr4_1:21778644-21778663 | Msa0540150:CDS | 45.0% | |
| ATTATGTCGGTGGAATCGCA+GGG | + | chr4_1:21778645-21778664 | Msa0540150:CDS | 45.0% | |
| CCTCCCAAAGATTCTATCAC+AGG | - | chr4_1:21778976-21778995 | None:intergenic | 45.0% | |
| CCTGTGATAGAATCTTTGGG+AGG | + | chr4_1:21778973-21778992 | Msa0540150:intron | 45.0% | |
| GCTTACTTCTTCGCTTTCAC+CGG | - | chr4_1:21779370-21779389 | None:intergenic | 45.0% | |
| ! | CACGTCTGACATGCTTTTCA+AGG | - | chr4_1:21779392-21779411 | None:intergenic | 45.0% |
| ! | CTTGAAAAGCATGTCAGACG+TGG | + | chr4_1:21779390-21779409 | Msa0540150:CDS | 45.0% |
| CTCGAAGCTTGTCCAATATG+TGG | + | chr4_1:21779513-21779532 | Msa0540150:CDS | 45.0% | |
| CCATGATTACCATGAGAGTG+TGG | - | chr4_1:21778602-21778621 | None:intergenic | 45.0% | |
| CCACACTCTCATGGTAATCA+TGG | + | chr4_1:21778599-21778618 | Msa0540150:CDS | 45.0% | |
| GGATTTCCTTTCGGCATCAA+TGG | + | chr4_1:21778620-21778639 | Msa0540150:CDS | 45.0% | |
| TATTATGTCGGTGGAATCGC+AGG | + | chr4_1:21778644-21778663 | Msa0540150:CDS | 45.0% | |
| ATTATGTCGGTGGAATCGCA+GGG | + | chr4_1:21778645-21778664 | Msa0540150:CDS | 45.0% | |
| CCTCCCAAAGATTCTATCAC+AGG | - | chr4_1:21778976-21778995 | None:intergenic | 45.0% | |
| CCTGTGATAGAATCTTTGGG+AGG | + | chr4_1:21778973-21778992 | Msa0540150:intron | 45.0% | |
| GCTTACTTCTTCGCTTTCAC+CGG | - | chr4_1:21779370-21779389 | None:intergenic | 45.0% | |
| ! | CACGTCTGACATGCTTTTCA+AGG | - | chr4_1:21779392-21779411 | None:intergenic | 45.0% |
| ! | CTTGAAAAGCATGTCAGACG+TGG | + | chr4_1:21779390-21779409 | Msa0540150:CDS | 45.0% |
| CTCGAAGCTTGTCCAATATG+TGG | + | chr4_1:21779513-21779532 | Msa0540150:CDS | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 21778593 | 21779584 | 21778593 | ID=Msa0540150;Name=Msa0540150 |
| chr4_1 | mRNA | 21778593 | 21779584 | 21778593 | ID=Msa0540150-mRNA-1;Parent=Msa0540150;Name=Msa0540150-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0|1|1|1|2|0|254 |
| chr4_1 | exon | 21778593 | 21778868 | 21778593 | ID=Msa0540150-mRNA-1:exon:6173;Parent=Msa0540150-mRNA-1 |
| chr4_1 | exon | 21779096 | 21779584 | 21779096 | ID=Msa0540150-mRNA-1:exon:6174;Parent=Msa0540150-mRNA-1 |
| chr4_1 | CDS | 21778593 | 21778868 | 21778593 | ID=Msa0540150-mRNA-1:cds;Parent=Msa0540150-mRNA-1 |
| chr4_1 | CDS | 21779096 | 21779584 | 21779096 | ID=Msa0540150-mRNA-1:cds;Parent=Msa0540150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
