Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0674670 | XP_024636225.1 | 85.827 | 254 | 36 | 0 | 1 | 254 | 1 | 254 | 1.73e-157 | 447 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0674670 | sp|Q9FHE4|BRG1_ARATH | 29.348 | 184 | 106 | 6 | 76 | 240 | 104 | 282 | 1.45e-13 | 72.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0674670 | A0A396I2E1 | 85.827 | 254 | 36 | 0 | 1 | 254 | 1 | 254 | 8.28e-158 | 447 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0674670 | Msa1371860 | 0.802789 | 4.749368e-49 | -8.615850e-47 |
| Msa0540110 | Msa0674670 | 0.959399 | 2.123704e-117 | -8.615850e-47 |
| Msa0540150 | Msa0674670 | 0.885746 | 6.235285e-72 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0674670 | MtrunA17_Chr4g0017931 | 85.827 | 254 | 36 | 0 | 1 | 254 | 1 | 254 | 1.60e-161 | 447 |
| Msa0674670 | MtrunA17_Chr4g0017891 | 70.472 | 254 | 75 | 0 | 1 | 254 | 1 | 254 | 9.33e-119 | 339 |
| Msa0674670 | MtrunA17_Chr2g0311321 | 78.539 | 219 | 47 | 0 | 1 | 219 | 1 | 219 | 1.24e-108 | 313 |
| Msa0674670 | MtrunA17_Chr4g0036941 | 55.212 | 259 | 103 | 3 | 1 | 252 | 3 | 255 | 1.36e-86 | 258 |
| Msa0674670 | MtrunA17_Chr2g0319361 | 53.462 | 260 | 107 | 2 | 1 | 252 | 1 | 254 | 4.35e-80 | 241 |
| Msa0674670 | MtrunA17_Chr4g0050301 | 58.784 | 148 | 60 | 1 | 105 | 252 | 14 | 160 | 3.45e-55 | 174 |
| Msa0674670 | MtrunA17_Chr3g0145641 | 36.047 | 172 | 95 | 5 | 80 | 247 | 19 | 179 | 3.88e-27 | 103 |
| Msa0674670 | MtrunA17_Chr4g0018631 | 31.500 | 200 | 122 | 4 | 59 | 247 | 13 | 208 | 3.96e-26 | 101 |
| Msa0674670 | MtrunA17_Chr2g0291661 | 25.131 | 191 | 121 | 4 | 78 | 248 | 128 | 316 | 2.82e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0674670 | AT4G35070.1 | 35.106 | 188 | 100 | 5 | 78 | 247 | 78 | 261 | 1.12e-22 | 94.0 |
| Msa0674670 | AT4G35070.2 | 34.574 | 188 | 101 | 5 | 78 | 247 | 23 | 206 | 2.37e-22 | 92.0 |
Find 42 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATCAGTTCATCAATAATA+AGG | 0.345168 | 4_4:+22431870 | Msa0674670:CDS |
| AGAATTTGACAAAATACTTA+AGG | 0.385423 | 4_4:+22432274 | Msa0674670:CDS |
| TGAAACTTGGACATGAGAAT+TGG | 0.392838 | 4_4:-22431791 | None:intergenic |
| TGTGGTTGTTGTAGTTCAAT+AGG | 0.393104 | 4_4:-22431715 | None:intergenic |
| GGTAATCATGGATTTCCTTT+CGG | 0.398155 | 4_4:+22431634 | Msa0674670:CDS |
| GGATTTCCTTTCGGCATCAA+TGG | 0.413294 | 4_4:+22431643 | Msa0674670:CDS |
| AACTTAAGATGCTTGAAACT+TGG | 0.421911 | 4_4:-22431804 | None:intergenic |
| TATTATGTCGGTGGAATCGC+AGG | 0.448522 | 4_4:+22431667 | Msa0674670:CDS |
| CTCGAAGCTTGTCCAATATG+TGG | 0.453869 | 4_4:+22432536 | Msa0674670:CDS |
| CCACACTCTCATGGTAATCA+TGG | 0.454463 | 4_4:+22431622 | Msa0674670:CDS |
| ACAAAATCAACAACAGTGGC+AGG | 0.458608 | 4_4:+22431750 | Msa0674670:CDS |
| TGACAAAATACTTAAGGAAA+GGG | 0.461383 | 4_4:+22432280 | Msa0674670:CDS |
| TGCAAAGAAAACACAGGAGT+TGG | 0.462584 | 4_4:+22432217 | Msa0674670:CDS |
| TGTTGTAGTTCAATAGGTTG+TGG | 0.475374 | 4_4:-22431709 | None:intergenic |
| GGCATCAATGGTTATTATGT+CGG | 0.476149 | 4_4:+22431655 | Msa0674670:CDS |
| TTGGACATGAGAATTGGAAA+AGG | 0.476885 | 4_4:-22431785 | None:intergenic |
| AATAACTTTGCATAACAAGT+TGG | 0.490355 | 4_4:+22432313 | Msa0674670:CDS |
| CACGAAGAAAGATGCATACA+TGG | 0.512767 | 4_4:-22432494 | None:intergenic |
| TTGACAAAATACTTAAGGAA+AGG | 0.515941 | 4_4:+22432279 | Msa0674670:CDS |
| TTTCTCAAATAGAGAATCAA+AGG | 0.518811 | 4_4:-22431833 | None:intergenic |
| GCTGCTACAACAACATCAAA+GGG | 0.527548 | 4_4:+22432136 | Msa0674670:CDS |
| TGGACATGAGAATTGGAAAA+GGG | 0.534112 | 4_4:-22431784 | None:intergenic |
| TGCTGCTACAACAACATCAA+AGG | 0.534305 | 4_4:+22432135 | Msa0674670:CDS |
| GCTTACTTCTTCGCTTTCAC+CGG | 0.535160 | 4_4:-22432390 | None:intergenic |
| ACAAATGATGATAATAAAGA+AGG | 0.542335 | 4_4:+22432178 | Msa0674670:CDS |
| TTTGCATAACAAGTTGGAAG+AGG | 0.544284 | 4_4:+22432319 | Msa0674670:CDS |
| AAGTGTAACACAAAATCCTC+AGG | 0.567006 | 4_4:+22432458 | Msa0674670:CDS |
| AATGATGCAAAATCATCTAC+CGG | 0.567540 | 4_4:+22432371 | Msa0674670:CDS |
| AAATCTCGTAAGAAGAATTG+AGG | 0.584045 | 4_4:+22432241 | Msa0674670:CDS |
| TCAAATAGAGAATCAAAGGT+AGG | 0.589676 | 4_4:-22431829 | None:intergenic |
| ATCATGCAACCACACTCTCA+TGG | 0.599430 | 4_4:+22431613 | None:intergenic |
| TCTATTTGAGAAACAAGTCA+AGG | 0.602819 | 4_4:+22431843 | Msa0674670:CDS |
| TAATAACCATTGATGCCGAA+AGG | 0.608678 | 4_4:-22431649 | None:intergenic |
| CTTGAAAAGCATGTCAGACG+TGG | 0.625187 | 4_4:+22432413 | Msa0674670:CDS |
| ATCAATGGTTATTATGTCGG+TGG | 0.625897 | 4_4:+22431658 | Msa0674670:CDS |
| CAAAATCAACAACAGTGGCA+GGG | 0.642850 | 4_4:+22431751 | Msa0674670:CDS |
| AAAAGTTGCAAAGAAAACAC+AGG | 0.671968 | 4_4:+22432211 | Msa0674670:CDS |
| ATTATGTCGGTGGAATCGCA+GGG | 0.686770 | 4_4:+22431668 | Msa0674670:CDS |
| AATTGGAAAAGGGAACAACA+TGG | 0.691856 | 4_4:-22431774 | None:intergenic |
| CCATGATTACCATGAGAGTG+TGG | 0.696444 | 4_4:-22431622 | None:intergenic |
| AACCACAAAATCAACAACAG+TGG | 0.702825 | 4_4:+22431746 | Msa0674670:CDS |
| TGGCATAAATAAGACACCTG+AGG | 0.722061 | 4_4:-22432474 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCAGTTCATCAATAATA+AGG | + | chr4_4:22431870-22431889 | Msa0674670:CDS | 20.0% |
| !!! | TATCAATTCATACATCTTTT+AGG | + | chr4_4:22432020-22432039 | Msa0674670:intron | 20.0% |
| !! | ACAAATGATGATAATAAAGA+AGG | + | chr4_4:22432178-22432197 | Msa0674670:CDS | 20.0% |
| !! | AGAATTTGACAAAATACTTA+AGG | + | chr4_4:22432274-22432293 | Msa0674670:CDS | 20.0% |
| !! | AAATCAGTTCATCAATAATA+AGG | + | chr4_4:22431870-22431889 | Msa0674670:CDS | 20.0% |
| !!! | TATCAATTCATACATCTTTT+AGG | + | chr4_4:22432020-22432039 | Msa0674670:intron | 20.0% |
| !! | ACAAATGATGATAATAAAGA+AGG | + | chr4_4:22432178-22432197 | Msa0674670:CDS | 20.0% |
| !! | AGAATTTGACAAAATACTTA+AGG | + | chr4_4:22432274-22432293 | Msa0674670:CDS | 20.0% |
| ! | TTTCTCAAATAGAGAATCAA+AGG | - | chr4_4:22431836-22431855 | None:intergenic | 25.0% |
| ! | TTGACAAAATACTTAAGGAA+AGG | + | chr4_4:22432279-22432298 | Msa0674670:CDS | 25.0% |
| ! | TGACAAAATACTTAAGGAAA+GGG | + | chr4_4:22432280-22432299 | Msa0674670:CDS | 25.0% |
| ! | AATAACTTTGCATAACAAGT+TGG | + | chr4_4:22432313-22432332 | Msa0674670:CDS | 25.0% |
| !!! | TTCTTTTTCATTCCACATAT+TGG | - | chr4_4:22432551-22432570 | None:intergenic | 25.0% |
| ! | AATATGTGGAATGAAAAAGA+AGG | + | chr4_4:22432550-22432569 | Msa0674670:CDS | 25.0% |
| ! | ATATGTGGAATGAAAAAGAA+GGG | + | chr4_4:22432551-22432570 | Msa0674670:CDS | 25.0% |
| ! | TTTCTCAAATAGAGAATCAA+AGG | - | chr4_4:22431836-22431855 | None:intergenic | 25.0% |
| ! | TTGACAAAATACTTAAGGAA+AGG | + | chr4_4:22432279-22432298 | Msa0674670:CDS | 25.0% |
| ! | TGACAAAATACTTAAGGAAA+GGG | + | chr4_4:22432280-22432299 | Msa0674670:CDS | 25.0% |
| ! | AATAACTTTGCATAACAAGT+TGG | + | chr4_4:22432313-22432332 | Msa0674670:CDS | 25.0% |
| !!! | TTCTTTTTCATTCCACATAT+TGG | - | chr4_4:22432551-22432570 | None:intergenic | 25.0% |
| ! | AATATGTGGAATGAAAAAGA+AGG | + | chr4_4:22432550-22432569 | Msa0674670:CDS | 25.0% |
| ! | ATATGTGGAATGAAAAAGAA+GGG | + | chr4_4:22432551-22432570 | Msa0674670:CDS | 25.0% |
| !!! | TTTTGTGGTTGATGATATTG+TGG | - | chr4_4:22431736-22431755 | None:intergenic | 30.0% |
| AACTTAAGATGCTTGAAACT+TGG | - | chr4_4:22431807-22431826 | None:intergenic | 30.0% | |
| TCAAATAGAGAATCAAAGGT+AGG | - | chr4_4:22431832-22431851 | None:intergenic | 30.0% | |
| TCTATTTGAGAAACAAGTCA+AGG | + | chr4_4:22431843-22431862 | Msa0674670:CDS | 30.0% | |
| AAAAGTTGCAAAGAAAACAC+AGG | + | chr4_4:22432211-22432230 | Msa0674670:CDS | 30.0% | |
| AAATCTCGTAAGAAGAATTG+AGG | + | chr4_4:22432241-22432260 | Msa0674670:CDS | 30.0% | |
| AATGATGCAAAATCATCTAC+CGG | + | chr4_4:22432371-22432390 | Msa0674670:CDS | 30.0% | |
| !!! | TTTTGTGGTTGATGATATTG+TGG | - | chr4_4:22431736-22431755 | None:intergenic | 30.0% |
| AACTTAAGATGCTTGAAACT+TGG | - | chr4_4:22431807-22431826 | None:intergenic | 30.0% | |
| TCAAATAGAGAATCAAAGGT+AGG | - | chr4_4:22431832-22431851 | None:intergenic | 30.0% | |
| TCTATTTGAGAAACAAGTCA+AGG | + | chr4_4:22431843-22431862 | Msa0674670:CDS | 30.0% | |
| AAAAGTTGCAAAGAAAACAC+AGG | + | chr4_4:22432211-22432230 | Msa0674670:CDS | 30.0% | |
| AAATCTCGTAAGAAGAATTG+AGG | + | chr4_4:22432241-22432260 | Msa0674670:CDS | 30.0% | |
| AATGATGCAAAATCATCTAC+CGG | + | chr4_4:22432371-22432390 | Msa0674670:CDS | 30.0% | |
| GGTAATCATGGATTTCCTTT+CGG | + | chr4_4:22431634-22431653 | Msa0674670:CDS | 35.0% | |
| TAATAACCATTGATGCCGAA+AGG | - | chr4_4:22431652-22431671 | None:intergenic | 35.0% | |
| GGCATCAATGGTTATTATGT+CGG | + | chr4_4:22431655-22431674 | Msa0674670:CDS | 35.0% | |
| ATCAATGGTTATTATGTCGG+TGG | + | chr4_4:22431658-22431677 | Msa0674670:CDS | 35.0% | |
| TGTTGTAGTTCAATAGGTTG+TGG | - | chr4_4:22431712-22431731 | None:intergenic | 35.0% | |
| TGTGGTTGTTGTAGTTCAAT+AGG | - | chr4_4:22431718-22431737 | None:intergenic | 35.0% | |
| AACCACAAAATCAACAACAG+TGG | + | chr4_4:22431746-22431765 | Msa0674670:CDS | 35.0% | |
| AATTGGAAAAGGGAACAACA+TGG | - | chr4_4:22431777-22431796 | None:intergenic | 35.0% | |
| TGGACATGAGAATTGGAAAA+GGG | - | chr4_4:22431787-22431806 | None:intergenic | 35.0% | |
| TTGGACATGAGAATTGGAAA+AGG | - | chr4_4:22431788-22431807 | None:intergenic | 35.0% | |
| TGAAACTTGGACATGAGAAT+TGG | - | chr4_4:22431794-22431813 | None:intergenic | 35.0% | |
| ! | TTTGCATAACAAGTTGGAAG+AGG | + | chr4_4:22432319-22432338 | Msa0674670:CDS | 35.0% |
| ! | GAGGATTTTGTGTTACACTT+GGG | - | chr4_4:22432458-22432477 | None:intergenic | 35.0% |
| ! | TGAGGATTTTGTGTTACACT+TGG | - | chr4_4:22432459-22432478 | None:intergenic | 35.0% |
| AAGTGTAACACAAAATCCTC+AGG | + | chr4_4:22432458-22432477 | Msa0674670:CDS | 35.0% | |
| GGTAATCATGGATTTCCTTT+CGG | + | chr4_4:22431634-22431653 | Msa0674670:CDS | 35.0% | |
| TAATAACCATTGATGCCGAA+AGG | - | chr4_4:22431652-22431671 | None:intergenic | 35.0% | |
| GGCATCAATGGTTATTATGT+CGG | + | chr4_4:22431655-22431674 | Msa0674670:CDS | 35.0% | |
| ATCAATGGTTATTATGTCGG+TGG | + | chr4_4:22431658-22431677 | Msa0674670:CDS | 35.0% | |
| TGTTGTAGTTCAATAGGTTG+TGG | - | chr4_4:22431712-22431731 | None:intergenic | 35.0% | |
| TGTGGTTGTTGTAGTTCAAT+AGG | - | chr4_4:22431718-22431737 | None:intergenic | 35.0% | |
| AACCACAAAATCAACAACAG+TGG | + | chr4_4:22431746-22431765 | Msa0674670:CDS | 35.0% | |
| AATTGGAAAAGGGAACAACA+TGG | - | chr4_4:22431777-22431796 | None:intergenic | 35.0% | |
| TGGACATGAGAATTGGAAAA+GGG | - | chr4_4:22431787-22431806 | None:intergenic | 35.0% | |
| TTGGACATGAGAATTGGAAA+AGG | - | chr4_4:22431788-22431807 | None:intergenic | 35.0% | |
| TGAAACTTGGACATGAGAAT+TGG | - | chr4_4:22431794-22431813 | None:intergenic | 35.0% | |
| ! | TTTGCATAACAAGTTGGAAG+AGG | + | chr4_4:22432319-22432338 | Msa0674670:CDS | 35.0% |
| ! | GAGGATTTTGTGTTACACTT+GGG | - | chr4_4:22432458-22432477 | None:intergenic | 35.0% |
| ! | TGAGGATTTTGTGTTACACT+TGG | - | chr4_4:22432459-22432478 | None:intergenic | 35.0% |
| AAGTGTAACACAAAATCCTC+AGG | + | chr4_4:22432458-22432477 | Msa0674670:CDS | 35.0% | |
| !!! | TGCCACTGTTGTTGATTTTG+TGG | - | chr4_4:22431751-22431770 | None:intergenic | 40.0% |
| ACAAAATCAACAACAGTGGC+AGG | + | chr4_4:22431750-22431769 | Msa0674670:CDS | 40.0% | |
| CAAAATCAACAACAGTGGCA+GGG | + | chr4_4:22431751-22431770 | Msa0674670:CDS | 40.0% | |
| TCTCCCTGTGATAGAATCTT+TGG | + | chr4_4:22431992-22432011 | Msa0674670:intron | 40.0% | |
| CTCCCTGTGATAGAATCTTT+GGG | + | chr4_4:22431993-22432012 | Msa0674670:intron | 40.0% | |
| CTCCCAAAGATTCTATCACA+GGG | - | chr4_4:22431998-22432017 | None:intergenic | 40.0% | |
| TGCTGCTACAACAACATCAA+AGG | + | chr4_4:22432135-22432154 | Msa0674670:CDS | 40.0% | |
| GCTGCTACAACAACATCAAA+GGG | + | chr4_4:22432136-22432155 | Msa0674670:CDS | 40.0% | |
| TGCAAAGAAAACACAGGAGT+TGG | + | chr4_4:22432217-22432236 | Msa0674670:CDS | 40.0% | |
| TGGCATAAATAAGACACCTG+AGG | - | chr4_4:22432477-22432496 | None:intergenic | 40.0% | |
| CACGAAGAAAGATGCATACA+TGG | - | chr4_4:22432497-22432516 | None:intergenic | 40.0% | |
| !!! | TGCCACTGTTGTTGATTTTG+TGG | - | chr4_4:22431751-22431770 | None:intergenic | 40.0% |
| ACAAAATCAACAACAGTGGC+AGG | + | chr4_4:22431750-22431769 | Msa0674670:CDS | 40.0% | |
| CAAAATCAACAACAGTGGCA+GGG | + | chr4_4:22431751-22431770 | Msa0674670:CDS | 40.0% | |
| TCTCCCTGTGATAGAATCTT+TGG | + | chr4_4:22431992-22432011 | Msa0674670:intron | 40.0% | |
| CTCCCTGTGATAGAATCTTT+GGG | + | chr4_4:22431993-22432012 | Msa0674670:intron | 40.0% | |
| CTCCCAAAGATTCTATCACA+GGG | - | chr4_4:22431998-22432017 | None:intergenic | 40.0% | |
| TGCTGCTACAACAACATCAA+AGG | + | chr4_4:22432135-22432154 | Msa0674670:CDS | 40.0% | |
| GCTGCTACAACAACATCAAA+GGG | + | chr4_4:22432136-22432155 | Msa0674670:CDS | 40.0% | |
| TGCAAAGAAAACACAGGAGT+TGG | + | chr4_4:22432217-22432236 | Msa0674670:CDS | 40.0% | |
| TGGCATAAATAAGACACCTG+AGG | - | chr4_4:22432477-22432496 | None:intergenic | 40.0% | |
| CACGAAGAAAGATGCATACA+TGG | - | chr4_4:22432497-22432516 | None:intergenic | 40.0% | |
| CCATGATTACCATGAGAGTG+TGG | - | chr4_4:22431625-22431644 | None:intergenic | 45.0% | |
| CCACACTCTCATGGTAATCA+TGG | + | chr4_4:22431622-22431641 | Msa0674670:CDS | 45.0% | |
| GGATTTCCTTTCGGCATCAA+TGG | + | chr4_4:22431643-22431662 | Msa0674670:CDS | 45.0% | |
| TATTATGTCGGTGGAATCGC+AGG | + | chr4_4:22431667-22431686 | Msa0674670:CDS | 45.0% | |
| ATTATGTCGGTGGAATCGCA+GGG | + | chr4_4:22431668-22431687 | Msa0674670:CDS | 45.0% | |
| CCTCCCAAAGATTCTATCAC+AGG | - | chr4_4:22431999-22432018 | None:intergenic | 45.0% | |
| CCTGTGATAGAATCTTTGGG+AGG | + | chr4_4:22431996-22432015 | Msa0674670:intron | 45.0% | |
| GCTTACTTCTTCGCTTTCAC+CGG | - | chr4_4:22432393-22432412 | None:intergenic | 45.0% | |
| ! | CACGTCTGACATGCTTTTCA+AGG | - | chr4_4:22432415-22432434 | None:intergenic | 45.0% |
| ! | CTTGAAAAGCATGTCAGACG+TGG | + | chr4_4:22432413-22432432 | Msa0674670:CDS | 45.0% |
| CTCGAAGCTTGTCCAATATG+TGG | + | chr4_4:22432536-22432555 | Msa0674670:CDS | 45.0% | |
| CCATGATTACCATGAGAGTG+TGG | - | chr4_4:22431625-22431644 | None:intergenic | 45.0% | |
| CCACACTCTCATGGTAATCA+TGG | + | chr4_4:22431622-22431641 | Msa0674670:CDS | 45.0% | |
| GGATTTCCTTTCGGCATCAA+TGG | + | chr4_4:22431643-22431662 | Msa0674670:CDS | 45.0% | |
| TATTATGTCGGTGGAATCGC+AGG | + | chr4_4:22431667-22431686 | Msa0674670:CDS | 45.0% | |
| ATTATGTCGGTGGAATCGCA+GGG | + | chr4_4:22431668-22431687 | Msa0674670:CDS | 45.0% | |
| CCTCCCAAAGATTCTATCAC+AGG | - | chr4_4:22431999-22432018 | None:intergenic | 45.0% | |
| CCTGTGATAGAATCTTTGGG+AGG | + | chr4_4:22431996-22432015 | Msa0674670:intron | 45.0% | |
| GCTTACTTCTTCGCTTTCAC+CGG | - | chr4_4:22432393-22432412 | None:intergenic | 45.0% | |
| ! | CACGTCTGACATGCTTTTCA+AGG | - | chr4_4:22432415-22432434 | None:intergenic | 45.0% |
| ! | CTTGAAAAGCATGTCAGACG+TGG | + | chr4_4:22432413-22432432 | Msa0674670:CDS | 45.0% |
| CTCGAAGCTTGTCCAATATG+TGG | + | chr4_4:22432536-22432555 | Msa0674670:CDS | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 22431616 | 22432607 | 22431616 | ID=Msa0674670;Name=Msa0674670 |
| chr4_4 | mRNA | 22431616 | 22432607 | 22431616 | ID=Msa0674670-mRNA-1;Parent=Msa0674670;Name=Msa0674670-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0|1|1|1|2|0|254 |
| chr4_4 | exon | 22431616 | 22431891 | 22431616 | ID=Msa0674670-mRNA-1:exon:6311;Parent=Msa0674670-mRNA-1 |
| chr4_4 | exon | 22432119 | 22432607 | 22432119 | ID=Msa0674670-mRNA-1:exon:6312;Parent=Msa0674670-mRNA-1 |
| chr4_4 | CDS | 22431616 | 22431891 | 22431616 | ID=Msa0674670-mRNA-1:cds;Parent=Msa0674670-mRNA-1 |
| chr4_4 | CDS | 22432119 | 22432607 | 22432119 | ID=Msa0674670-mRNA-1:cds;Parent=Msa0674670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
