Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0540990 | XP_013442399.1 | 83.439 | 471 | 22 | 3 | 1 | 415 | 1 | 471 | 0.0 | 771 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0540990 | sp|Q09131|PPAF_SOYBN | 72.991 | 448 | 66 | 2 | 23 | 415 | 17 | 464 | 0.0 | 674 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0540990 | A0A072TFW4 | 83.439 | 471 | 22 | 3 | 1 | 415 | 1 | 471 | 0.0 | 771 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0540990 | Msa0597040 | 0.909303 | 6.608275e-82 | -8.615850e-47 |
| Msa0540990 | Msa0675690 | 0.883160 | 5.676010e-71 | -8.615850e-47 |
| Msa0540990 | Msa0916690 | 0.817276 | 3.586333e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0540990 | MtrunA17_Chr4g0019091 | 76.562 | 448 | 50 | 2 | 23 | 415 | 18 | 465 | 0.0 | 701 |
| Msa0540990 | MtrunA17_Chr1g0211041 | 74.194 | 465 | 64 | 3 | 7 | 415 | 3 | 467 | 0.0 | 681 |
| Msa0540990 | MtrunA17_Chr4g0019071 | 86.842 | 304 | 5 | 1 | 147 | 415 | 39 | 342 | 0.0 | 538 |
| Msa0540990 | MtrunA17_Chr4g0064541 | 52.778 | 432 | 146 | 4 | 28 | 403 | 23 | 452 | 3.11e-157 | 452 |
| Msa0540990 | MtrunA17_Chr3g0098721 | 40.278 | 360 | 178 | 7 | 63 | 398 | 64 | 410 | 1.81e-80 | 254 |
| Msa0540990 | MtrunA17_Chr5g0443881 | 38.965 | 367 | 187 | 7 | 70 | 412 | 77 | 430 | 2.80e-80 | 254 |
| Msa0540990 | MtrunA17_Chr4g0019081 | 76.471 | 170 | 19 | 2 | 1 | 149 | 1 | 170 | 8.84e-80 | 243 |
| Msa0540990 | MtrunA17_Chr1g0178831 | 37.950 | 361 | 188 | 7 | 62 | 398 | 66 | 414 | 6.24e-75 | 240 |
| Msa0540990 | MtrunA17_Chr7g0266131 | 37.396 | 361 | 190 | 7 | 62 | 398 | 74 | 422 | 1.73e-73 | 236 |
| Msa0540990 | MtrunA17_Chr7g0266151 | 37.297 | 370 | 194 | 8 | 63 | 406 | 67 | 424 | 1.43e-72 | 233 |
| Msa0540990 | MtrunA17_Chr7g0236041 | 36.538 | 312 | 163 | 6 | 67 | 348 | 108 | 414 | 6.36e-55 | 190 |
| Msa0540990 | MtrunA17_Chr3g0121431 | 39.209 | 278 | 141 | 5 | 94 | 348 | 198 | 470 | 1.01e-54 | 191 |
| Msa0540990 | MtrunA17_Chr3g0121411 | 39.209 | 278 | 141 | 5 | 94 | 348 | 143 | 415 | 1.17e-54 | 189 |
| Msa0540990 | MtrunA17_Chr6g0453731 | 34.277 | 318 | 171 | 8 | 64 | 348 | 103 | 415 | 1.93e-51 | 182 |
| Msa0540990 | MtrunA17_Chr4g0022251 | 30.292 | 274 | 155 | 10 | 98 | 346 | 283 | 545 | 2.53e-25 | 108 |
| Msa0540990 | MtrunA17_Chr1g0173511 | 27.368 | 285 | 160 | 11 | 98 | 346 | 147 | 420 | 1.07e-22 | 100 |
| Msa0540990 | MtrunA17_Chr3g0116051 | 29.348 | 276 | 156 | 12 | 98 | 342 | 249 | 516 | 1.09e-19 | 91.3 |
| Msa0540990 | MtrunA17_Chr8g0364481 | 28.727 | 275 | 161 | 11 | 98 | 343 | 238 | 506 | 1.11e-18 | 88.2 |
| Msa0540990 | MtrunA17_Chr5g0419621 | 28.521 | 284 | 150 | 11 | 98 | 343 | 245 | 513 | 1.57e-18 | 87.8 |
| Msa0540990 | MtrunA17_Chr4g0057551 | 29.286 | 280 | 159 | 13 | 98 | 346 | 253 | 524 | 4.73e-18 | 86.3 |
| Msa0540990 | MtrunA17_Chr4g0043001 | 26.950 | 282 | 162 | 9 | 98 | 342 | 212 | 486 | 4.85e-15 | 77.0 |
| Msa0540990 | MtrunA17_Chr4g0043021 | 26.282 | 312 | 177 | 12 | 98 | 369 | 212 | 510 | 8.01e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0540990 | AT2G16430.2 | 65.517 | 464 | 104 | 3 | 1 | 409 | 1 | 463 | 0.0 | 624 |
| Msa0540990 | AT2G27190.1 | 61.538 | 455 | 115 | 3 | 4 | 403 | 9 | 458 | 0.0 | 565 |
| Msa0540990 | AT2G16430.1 | 72.404 | 337 | 58 | 1 | 108 | 409 | 7 | 343 | 0.0 | 508 |
| Msa0540990 | AT1G56360.1 | 55.315 | 461 | 142 | 5 | 9 | 408 | 1 | 458 | 7.02e-177 | 502 |
| Msa0540990 | AT4G36350.1 | 53.947 | 456 | 147 | 5 | 13 | 408 | 6 | 458 | 7.28e-173 | 492 |
| Msa0540990 | AT5G34850.1 | 50.220 | 454 | 165 | 5 | 7 | 404 | 4 | 452 | 3.83e-156 | 449 |
| Msa0540990 | AT2G18130.1 | 47.619 | 462 | 161 | 7 | 6 | 409 | 2 | 440 | 9.17e-143 | 414 |
| Msa0540990 | AT3G46120.1 | 39.651 | 459 | 135 | 10 | 7 | 403 | 3 | 381 | 1.08e-96 | 295 |
| Msa0540990 | AT1G52940.1 | 53.498 | 243 | 88 | 4 | 46 | 265 | 1 | 241 | 8.64e-88 | 267 |
| Msa0540990 | AT3G52820.1 | 38.781 | 361 | 185 | 6 | 62 | 398 | 67 | 415 | 3.71e-78 | 248 |
| Msa0540990 | AT3G20500.1 | 38.889 | 360 | 183 | 6 | 63 | 398 | 68 | 414 | 3.77e-76 | 243 |
| Msa0540990 | AT3G52810.1 | 34.852 | 439 | 222 | 9 | 4 | 398 | 1 | 419 | 6.37e-71 | 230 |
| Msa0540990 | AT3G52780.1 | 37.604 | 359 | 187 | 7 | 67 | 398 | 68 | 416 | 4.80e-69 | 224 |
| Msa0540990 | AT3G52780.2 | 39.427 | 279 | 156 | 6 | 67 | 342 | 68 | 336 | 8.00e-56 | 188 |
| Msa0540990 | AT4G13700.1 | 36.478 | 318 | 164 | 8 | 64 | 348 | 97 | 409 | 1.77e-55 | 190 |
| Msa0540990 | AT3G07130.1 | 37.276 | 279 | 147 | 5 | 93 | 348 | 135 | 408 | 1.01e-52 | 184 |
| Msa0540990 | AT2G32770.2 | 36.552 | 290 | 147 | 6 | 92 | 348 | 62 | 347 | 7.11e-52 | 180 |
| Msa0540990 | AT2G32770.3 | 36.552 | 290 | 147 | 6 | 92 | 348 | 143 | 428 | 7.00e-51 | 180 |
| Msa0540990 | AT4G13700.2 | 35.275 | 309 | 162 | 8 | 64 | 339 | 97 | 400 | 2.00e-50 | 176 |
| Msa0540990 | AT3G07130.2 | 33.227 | 313 | 178 | 7 | 93 | 379 | 135 | 442 | 1.99e-47 | 171 |
| Msa0540990 | AT2G32770.1 | 32.069 | 290 | 131 | 7 | 92 | 348 | 143 | 399 | 1.51e-37 | 143 |
| Msa0540990 | AT5G50400.2 | 30.292 | 274 | 158 | 12 | 98 | 343 | 165 | 433 | 3.88e-21 | 95.9 |
| Msa0540990 | AT5G50400.1 | 30.292 | 274 | 158 | 12 | 98 | 343 | 237 | 505 | 5.21e-21 | 95.9 |
| Msa0540990 | AT1G13750.1 | 28.873 | 284 | 155 | 11 | 98 | 346 | 239 | 510 | 5.93e-19 | 89.7 |
| Msa0540990 | AT4G24890.1 | 28.881 | 277 | 158 | 12 | 98 | 343 | 241 | 509 | 2.56e-18 | 87.8 |
| Msa0540990 | AT1G13900.1 | 26.207 | 290 | 168 | 8 | 98 | 348 | 213 | 495 | 3.56e-17 | 84.3 |
| Msa0540990 | AT2G03450.1 | 27.365 | 296 | 159 | 11 | 98 | 348 | 211 | 495 | 9.74e-16 | 79.7 |
Find 85 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTGGAAGCTTACAATTTC+TGG | 0.082605 | 4_1:-24256975 | None:intergenic |
| TCCAACCTCATAATAATATT+TGG | 0.245668 | 4_1:-24255960 | None:intergenic |
| TTGCTTATCAACCTTGGATA+TGG | 0.250325 | 4_1:+24256922 | Msa0540990:CDS |
| GGTCGGATGCAGTGCGTTAC+TGG | 0.268473 | 4_1:+24255734 | Msa0540990:CDS |
| GTACTTTGTGATGCTTTATA+AGG | 0.272518 | 4_1:-24257155 | None:intergenic |
| ATTGCATATAATATCGTAAA+TGG | 0.285493 | 4_1:+24258105 | Msa0540990:CDS |
| CACAAAGTACTTCACCCTTT+TGG | 0.304317 | 4_1:+24257168 | Msa0540990:CDS |
| AGAACACAACAAGGCAGTTT+TGG | 0.305509 | 4_1:+24255987 | Msa0540990:CDS |
| AAGCTAGCTAAAGGGAAAAT+TGG | 0.309259 | 4_1:+24255778 | Msa0540990:CDS |
| GTGATGCTTTATAAGGAGTA+TGG | 0.325433 | 4_1:-24257148 | None:intergenic |
| CTGGAGCGAAATCAAGTTCA+TGG | 0.325613 | 4_1:-24256956 | None:intergenic |
| AAAGTTGATGTTGTGTTTGC+TGG | 0.344435 | 4_1:+24257920 | Msa0540990:CDS |
| AAGAGCTACCGAGAGTTAAC+AGG | 0.373690 | 4_1:+24257780 | Msa0540990:CDS |
| TCAATGGGAACCATGAGGTT+TGG | 0.378926 | 4_1:-24258727 | None:intergenic |
| CACCGAACATTGTCATCATT+CGG | 0.379580 | 4_1:-24256867 | None:intergenic |
| ACAATGTTCGGTGGGATACT+TGG | 0.380466 | 4_1:+24256877 | Msa0540990:CDS |
| GTATGGTATCGGTGCGAAAA+AGG | 0.385639 | 4_1:-24257131 | None:intergenic |
| AATTTGGTGTTTGTGTGTAA+TGG | 0.386262 | 4_1:+24254794 | Msa0540990:CDS |
| TTTATTATTATCACTAGGTT+TGG | 0.389492 | 4_1:+24254766 | Msa0540990:CDS |
| AGATACTTCAATTACTCATC+TGG | 0.391362 | 4_1:+24255808 | Msa0540990:CDS |
| CCATACACATTTGGTCTCAT+AGG | 0.391563 | 4_1:+24256043 | Msa0540990:CDS |
| TTTACAACTCCTCCTGCAAT+TGG | 0.394407 | 4_1:+24256010 | Msa0540990:CDS |
| GCATTTAGAGAAGCCAGCTT+TGG | 0.397912 | 4_1:+24258576 | Msa0540990:CDS |
| GAAAATGATAATCTTTGAAA+TGG | 0.399082 | 4_1:-24254740 | None:intergenic |
| CTGTTAAGAGTGATTCCCTT+TGG | 0.403017 | 4_1:+24258670 | Msa0540990:CDS |
| CCAAATGTGTATGGCACATC+AGG | 0.405903 | 4_1:-24256034 | None:intergenic |
| TGGCTATAATGCTCCTCAAC+AGG | 0.417709 | 4_1:+24254898 | Msa0540990:CDS |
| CACATTGAGTATTCTTCAAT+GGG | 0.419089 | 4_1:-24258742 | None:intergenic |
| CCTGATGTGCCATACACATT+TGG | 0.422920 | 4_1:+24256034 | Msa0540990:CDS |
| GGCACATCAGGACCAATTGC+AGG | 0.425315 | 4_1:-24256022 | None:intergenic |
| TGAGGTTTGGAATCATCAAC+CGG | 0.433017 | 4_1:-24258714 | None:intergenic |
| TTGGCCTCATATTCAGCATA+TGG | 0.449605 | 4_1:+24257227 | Msa0540990:CDS |
| ACCAAATATTATTATGAGGT+TGG | 0.454862 | 4_1:+24255959 | Msa0540990:CDS |
| CAATGTTCGGTGGGATACTT+GGG | 0.455598 | 4_1:+24256878 | Msa0540990:CDS |
| TTATTCATCACGCCACTGTA+AGG | 0.460515 | 4_1:+24255833 | Msa0540990:CDS |
| GTATTCTATCAAAAGAGCTT+CGG | 0.462181 | 4_1:+24257190 | Msa0540990:CDS |
| TTCGGCACACATCATTGTCT+TGG | 0.468563 | 4_1:+24257208 | Msa0540990:CDS |
| ACCCGAATGATGACAATGTT+CGG | 0.483048 | 4_1:+24256865 | Msa0540990:CDS |
| AATACCATATGCTGAATATG+AGG | 0.494395 | 4_1:-24257231 | None:intergenic |
| AGCACAAGAAGCTAGCTAAA+GGG | 0.498611 | 4_1:+24255770 | Msa0540990:CDS |
| TTAACAGGAAAGAAACTCCT+TGG | 0.501102 | 4_1:+24257795 | Msa0540990:CDS |
| CAATACCAAATATTATTATG+AGG | 0.502409 | 4_1:+24255955 | Msa0540990:CDS |
| CCTATGAGACCAAATGTGTA+TGG | 0.507863 | 4_1:-24256043 | None:intergenic |
| CAACCTTGGATATGGACTGT+TGG | 0.510685 | 4_1:+24256930 | Msa0540990:CDS |
| GGACACATGCTTACTATAGC+TGG | 0.517434 | 4_1:+24258625 | Msa0540990:CDS |
| TATCAATTGAATTCAACAAA+AGG | 0.519489 | 4_1:+24256798 | Msa0540990:CDS |
| ACCGAACATTGTCATCATTC+GGG | 0.520281 | 4_1:-24256866 | None:intergenic |
| AAGCACAAGAAGCTAGCTAA+AGG | 0.523147 | 4_1:+24255769 | Msa0540990:CDS |
| TGAGAGTAATGTTTGAGTCA+TGG | 0.529431 | 4_1:+24257885 | Msa0540990:CDS |
| GGAGTGTTGCTTATCAACCT+TGG | 0.535303 | 4_1:+24256916 | Msa0540990:CDS |
| TCTTCAAGCCACGCATATTG+TGG | 0.536931 | 4_1:-24257758 | None:intergenic |
| GTTTCTTTCCTGTTAACTCT+CGG | 0.538969 | 4_1:-24257788 | None:intergenic |
| TGGGTGACTGAGGATGAACC+AGG | 0.542544 | 4_1:+24255712 | Msa0540990:intron |
| ATCTTTCGTAGGCATGTACA+TGG | 0.549448 | 4_1:-24257943 | None:intergenic |
| CGCCACTGTAAGGAATTTGA+AGG | 0.553081 | 4_1:+24255843 | Msa0540990:CDS |
| ACAGCTATCATTACATGGAA+GGG | 0.559696 | 4_1:+24257855 | Msa0540990:CDS |
| AACAGCTATCATTACATGGA+AGG | 0.564929 | 4_1:+24257854 | Msa0540990:CDS |
| TGTTGAGGAGCATTATAGCC+AGG | 0.567984 | 4_1:-24254896 | None:intergenic |
| CTTTATAAGGAGTATGGTAT+CGG | 0.573117 | 4_1:-24257142 | None:intergenic |
| TTCGGTGGGATACTTGGGGA+AGG | 0.580992 | 4_1:+24256883 | Msa0540990:CDS |
| CAGCTATCATTACATGGAAG+GGG | 0.582038 | 4_1:+24257856 | Msa0540990:CDS |
| TTGTTCTCATGCATTCACCT+TGG | 0.582761 | 4_1:+24257822 | Msa0540990:CDS |
| GTTGATGATTCCAAACCTCA+TGG | 0.582800 | 4_1:+24258717 | Msa0540990:CDS |
| TAGCAACAGCTATCATTACA+TGG | 0.590375 | 4_1:+24257850 | Msa0540990:CDS |
| TTGGTGTTTGTGTGTAATGG+AGG | 0.590798 | 4_1:+24254797 | Msa0540990:CDS |
| GACTGAGGATGAACCAGGGT+CGG | 0.592220 | 4_1:+24255717 | Msa0540990:intron |
| TAACGCACTGCATCCGACCC+TGG | 0.593203 | 4_1:-24255730 | None:intergenic |
| CTTGGGGAAGGTTTGCAGAG+AGG | 0.615319 | 4_1:+24256895 | Msa0540990:CDS |
| TTTCCAACAGTCCATATCCA+AGG | 0.618073 | 4_1:-24256933 | None:intergenic |
| GAATGATGACAATGTTCGGT+GGG | 0.624923 | 4_1:+24256869 | Msa0540990:CDS |
| AGTACTTACAGATCTTTCGT+AGG | 0.631526 | 4_1:-24257954 | None:intergenic |
| TCTAGTTTATTATTATCACT+AGG | 0.632946 | 4_1:+24254761 | Msa0540990:CDS |
| CGAATGATGACAATGTTCGG+TGG | 0.635706 | 4_1:+24256868 | Msa0540990:CDS |
| AGCTGGCATAGAAATCAAGA+TGG | 0.638512 | 4_1:+24258642 | Msa0540990:CDS |
| TACCTTCAAATTCCTTACAG+TGG | 0.644962 | 4_1:-24255845 | None:intergenic |
| AATATACACCACAATATGCG+TGG | 0.647948 | 4_1:+24257750 | Msa0540990:CDS |
| GAGGTTTGGAATCATCAACC+GGG | 0.673172 | 4_1:-24258713 | None:intergenic |
| ATTCTTCAATGGGAACCATG+AGG | 0.678851 | 4_1:-24258732 | None:intergenic |
| TGCATGAGAACAATCAACCA+AGG | 0.682000 | 4_1:-24257812 | None:intergenic |
| ACATCAGGACCAATTGCAGG+AGG | 0.687083 | 4_1:-24256019 | None:intergenic |
| TAGCTGTTGCTATTATACCA+AGG | 0.710700 | 4_1:-24257839 | None:intergenic |
| AATGTTCGGTGGGATACTTG+GGG | 0.718230 | 4_1:+24256879 | Msa0540990:CDS |
| GGGTGACTGAGGATGAACCA+GGG | 0.725248 | 4_1:+24255713 | Msa0540990:intron |
| TTGGACTTAAGAACACAACA+AGG | 0.748770 | 4_1:+24255978 | Msa0540990:CDS |
| TGAGGAGCATTATAGCCAGG+AGG | 0.751028 | 4_1:-24254893 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATATGTTTTTAAATCA+CGG | + | chr4_1:24254966-24254985 | Msa0540990:intron | 10.0% |
| !! | AGAATTGTAATAAAAATTTA+GGG | + | chr4_1:24255209-24255228 | Msa0540990:intron | 10.0% |
| !!! | TTATTTAATTTTTAACTTCA+GGG | - | chr4_1:24257553-24257572 | None:intergenic | 10.0% |
| !!! | TTTATTTAATTTTTAACTTC+AGG | - | chr4_1:24257554-24257573 | None:intergenic | 10.0% |
| !! | AACAGAAATTCAATATAAAA+TGG | - | chr4_1:24255076-24255095 | None:intergenic | 15.0% |
| !! | GAGAATTGTAATAAAAATTT+AGG | + | chr4_1:24255208-24255227 | Msa0540990:intron | 15.0% |
| !! | ATTCTTGATATTATAAAGAA+TGG | + | chr4_1:24255252-24255271 | Msa0540990:intron | 15.0% |
| !!! | CATTTTGAAACAAATTTTTT+TGG | - | chr4_1:24255467-24255486 | None:intergenic | 15.0% |
| !!! | TGATTTTCTCAAATTATTAA+CGG | - | chr4_1:24256206-24256225 | None:intergenic | 15.0% |
| !! | TGAATATTTATATTATTGGT+AGG | - | chr4_1:24256378-24256397 | None:intergenic | 15.0% |
| !!! | CAAATTAAATCGATTTATAT+TGG | - | chr4_1:24256995-24257014 | None:intergenic | 15.0% |
| !!! | CAATATAAATCGATTTAATT+TGG | + | chr4_1:24256993-24257012 | Msa0540990:intron | 15.0% |
| !!! | TTTCAAAATATTTTGTGAAA+AGG | - | chr4_1:24258002-24258021 | None:intergenic | 15.0% |
| !!! | TTTCTGTAATATTTTATTGA+AGG | + | chr4_1:24258399-24258418 | Msa0540990:intron | 15.0% |
| !!! | GAAAATGATAATCTTTGAAA+TGG | - | chr4_1:24254743-24254762 | None:intergenic | 20.0% |
| !!! | TCTAGTTTATTATTATCACT+AGG | + | chr4_1:24254761-24254780 | Msa0540990:CDS | 20.0% |
| !! | TTTATTATTATCACTAGGTT+TGG | + | chr4_1:24254766-24254785 | Msa0540990:CDS | 20.0% |
| !! | TTTCTGTTAAAATATACTCT+TGG | + | chr4_1:24255088-24255107 | Msa0540990:intron | 20.0% |
| !! | TGGAAGTAAATATACAAAAT+AGG | + | chr4_1:24255272-24255291 | Msa0540990:intron | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | - | chr4_1:24255507-24255526 | None:intergenic | 20.0% |
| !!! | TAGTTTTAAAAGTAACACTT+TGG | - | chr4_1:24255570-24255589 | None:intergenic | 20.0% |
| !! | AAAACTAACCAAAGTAAATA+AGG | + | chr4_1:24255583-24255602 | Msa0540990:intron | 20.0% |
| !!! | CAAATTATCCTTATTTACTT+TGG | - | chr4_1:24255594-24255613 | None:intergenic | 20.0% |
| !! | CAAAGTAAATAAGGATAATT+TGG | + | chr4_1:24255592-24255611 | Msa0540990:intron | 20.0% |
| !!! | TTGATATTTTTGCTTCTTTT+TGG | + | chr4_1:24255926-24255945 | Msa0540990:intron | 20.0% |
| !! | CAATACCAAATATTATTATG+AGG | + | chr4_1:24255955-24255974 | Msa0540990:CDS | 20.0% |
| !!! | ATTTTAAGATATCCTTCAAT+TGG | + | chr4_1:24256339-24256358 | Msa0540990:intron | 20.0% |
| !!! | TTTTAAGATATCCTTCAATT+GGG | + | chr4_1:24256340-24256359 | Msa0540990:intron | 20.0% |
| !!! | ATATAAATATTTCCTTTTGC+AGG | + | chr4_1:24256401-24256420 | Msa0540990:intron | 20.0% |
| !! | TATCAATTGAATTCAACAAA+AGG | + | chr4_1:24256798-24256817 | Msa0540990:CDS | 20.0% |
| !!! | ATCTAATAGTGGATTTTTAT+CGG | + | chr4_1:24257461-24257480 | Msa0540990:intron | 20.0% |
| !! | AAATTATTACAAGGATTTAC+AGG | - | chr4_1:24257525-24257544 | None:intergenic | 20.0% |
| !! | TTATTGTGTAAACTTGTAAA+GGG | + | chr4_1:24257653-24257672 | Msa0540990:intron | 20.0% |
| !!! | ATATAATCTTCATTTTTCTC+AGG | + | chr4_1:24257725-24257744 | Msa0540990:intron | 20.0% |
| !! | ATTGCATATAATATCGTAAA+TGG | + | chr4_1:24258105-24258124 | Msa0540990:CDS | 20.0% |
| !!! | AGTCATTAAGTTTTCATTTA+TGG | - | chr4_1:24258222-24258241 | None:intergenic | 20.0% |
| !! | AATATTACAGAAAGAGAAAT+CGG | - | chr4_1:24258392-24258411 | None:intergenic | 20.0% |
| !! | AATGATAGAGACAATTAAAA+AGG | + | chr4_1:24258485-24258504 | Msa0540990:intron | 20.0% |
| !! | AAATCTATTGAAAAACCAAA+GGG | - | chr4_1:24258688-24258707 | None:intergenic | 20.0% |
| !! | AAAATCTATTGAAAAACCAA+AGG | - | chr4_1:24258689-24258708 | None:intergenic | 20.0% |
| !!! | TTTGGTTTTTCAATAGATTT+TGG | + | chr4_1:24258688-24258707 | Msa0540990:CDS | 20.0% |
| !!! | AACAAGTATTTTTGTTAGGA+AGG | + | chr4_1:24254823-24254842 | Msa0540990:CDS | 25.0% |
| ! | AAATAGAAAAATACCTGTTG+AGG | - | chr4_1:24254914-24254933 | None:intergenic | 25.0% |
| !!! | CGTTGCAATTTTTTATACTA+CGG | + | chr4_1:24255186-24255205 | Msa0540990:intron | 25.0% |
| ! | AACTTATGATGATACATGTT+TGG | + | chr4_1:24255341-24255360 | Msa0540990:intron | 25.0% |
| ! | AATGATTAAGAGAAAGAGAA+TGG | - | chr4_1:24255626-24255645 | None:intergenic | 25.0% |
| ! | CATTGCATTTCTTAATATGA+AGG | + | chr4_1:24255642-24255661 | Msa0540990:intron | 25.0% |
| ! | AAATATCAAAACTTTGCATC+TGG | - | chr4_1:24255915-24255934 | None:intergenic | 25.0% |
| ! | ACCAAATATTATTATGAGGT+TGG | + | chr4_1:24255959-24255978 | Msa0540990:CDS | 25.0% |
| ! | TCCAACCTCATAATAATATT+TGG | - | chr4_1:24255963-24255982 | None:intergenic | 25.0% |
| ! | ACAAATCACAACTAATCATT+TGG | + | chr4_1:24256483-24256502 | Msa0540990:intron | 25.0% |
| ! | GTTCATTCATTACCAAAATT+TGG | - | chr4_1:24257057-24257076 | None:intergenic | 25.0% |
| ! | GAATGAACTAATGATTAACA+TGG | + | chr4_1:24257069-24257088 | Msa0540990:intron | 25.0% |
| !! | CTTTTGATAGAATACCAAAA+GGG | - | chr4_1:24257185-24257204 | None:intergenic | 25.0% |
| !! | TCTTTTGATAGAATACCAAA+AGG | - | chr4_1:24257186-24257205 | None:intergenic | 25.0% |
| ! | TGCAAATAAAATTGATCCAT+TGG | - | chr4_1:24257326-24257345 | None:intergenic | 25.0% |
| !! | TGTTTTACAATAACAGTTTG+TGG | - | chr4_1:24257364-24257383 | None:intergenic | 25.0% |
| ! | TAAAAATTTAACATGCCTTC+AGG | + | chr4_1:24257575-24257594 | Msa0540990:intron | 25.0% |
| ! | CTTATTGTGTAAACTTGTAA+AGG | + | chr4_1:24257652-24257671 | Msa0540990:intron | 25.0% |
| ! | ATCTCCAATGTTTATGTATA+CGG | - | chr4_1:24258163-24258182 | None:intergenic | 25.0% |
| !!! | TTTTTTGAGTTGTCGTTTTA+AGG | + | chr4_1:24258264-24258283 | Msa0540990:intron | 25.0% |
| !! | CAATTTTTGACATAAAGAAC+AGG | + | chr4_1:24258604-24258623 | Msa0540990:CDS | 25.0% |
| !!! | ACTAGGTTTGGTTTTGAATT+TGG | + | chr4_1:24254778-24254797 | Msa0540990:CDS | 30.0% |
| !! | AATTTGGTGTTTGTGTGTAA+TGG | + | chr4_1:24254794-24254813 | Msa0540990:CDS | 30.0% |
| !! | GCACAACAAGTATTTTTGTT+AGG | + | chr4_1:24254819-24254838 | Msa0540990:CDS | 30.0% |
| TTAAAAACATCGCTATCAAG+TGG | - | chr4_1:24254869-24254888 | None:intergenic | 30.0% | |
| !!! | ACTTGATAGCGATGTTTTTA+AGG | + | chr4_1:24254868-24254887 | Msa0540990:CDS | 30.0% |
| ! | TCCAATTTTGAATTGAACCA+TGG | + | chr4_1:24254935-24254954 | Msa0540990:intron | 30.0% |
| TCCATGGTTCAATTCAAAAT+TGG | - | chr4_1:24254939-24254958 | None:intergenic | 30.0% | |
| GAAAATTGCAGTTAAAATGC+AGG | + | chr4_1:24255013-24255032 | Msa0540990:intron | 30.0% | |
| TTAAAATGCAGGTTTAATCG+TGG | + | chr4_1:24255024-24255043 | Msa0540990:intron | 30.0% | |
| ! | TGTACAGAGTATTAATTGGA+GGG | - | chr4_1:24255541-24255560 | None:intergenic | 30.0% |
| ! | GTAGTGTACAGAGTATTAAT+TGG | - | chr4_1:24255545-24255564 | None:intergenic | 30.0% |
| ATGAAGGTTCATATAACACA+AGG | + | chr4_1:24255658-24255677 | Msa0540990:intron | 30.0% | |
| AGATACTTCAATTACTCATC+TGG | + | chr4_1:24255808-24255827 | Msa0540990:CDS | 30.0% | |
| AGAAACAACATACATGACAA+GGG | - | chr4_1:24255889-24255908 | None:intergenic | 30.0% | |
| AGGTAAACTGTATTCTTTCA+TGG | + | chr4_1:24256063-24256082 | Msa0540990:intron | 30.0% | |
| ACCACAATGATATCTCATAA+AGG | - | chr4_1:24256097-24256116 | None:intergenic | 30.0% | |
| TTCAGTGCAATTATATGTGT+CGG | + | chr4_1:24256231-24256250 | Msa0540990:intron | 30.0% | |
| CTTTCAGTTCTCTTACAAAT+TGG | + | chr4_1:24256312-24256331 | Msa0540990:intron | 30.0% | |
| ACTATTCAGTCTTTACAACA+TGG | + | chr4_1:24256652-24256671 | Msa0540990:intron | 30.0% | |
| TATTGGAAGCTTACAATTTC+TGG | - | chr4_1:24256978-24256997 | None:intergenic | 30.0% | |
| AGAATGAAAAGTTTCTCGAA+TGG | - | chr4_1:24257025-24257044 | None:intergenic | 30.0% | |
| ! | TCTTTTCCAAGTCCAAATTT+TGG | + | chr4_1:24257042-24257061 | Msa0540990:intron | 30.0% |
| TCATTACCAAAATTTGGACT+TGG | - | chr4_1:24257051-24257070 | None:intergenic | 30.0% | |
| ! | CTTTATAAGGAGTATGGTAT+CGG | - | chr4_1:24257145-24257164 | None:intergenic | 30.0% |
| GTACTTTGTGATGCTTTATA+AGG | - | chr4_1:24257158-24257177 | None:intergenic | 30.0% | |
| GTATTCTATCAAAAGAGCTT+CGG | + | chr4_1:24257190-24257209 | Msa0540990:CDS | 30.0% | |
| AATACCATATGCTGAATATG+AGG | - | chr4_1:24257234-24257253 | None:intergenic | 30.0% | |
| TAGAAATTAGTACTGTGACA+TGG | - | chr4_1:24257424-24257443 | None:intergenic | 30.0% | |
| AGGGACGTAAAATTATTACA+AGG | - | chr4_1:24257534-24257553 | None:intergenic | 30.0% | |
| TCTCCAATGTTTATGTATAC+GGG | - | chr4_1:24258162-24258181 | None:intergenic | 30.0% | |
| GTATACATAAACATTGGAGA+TGG | + | chr4_1:24258162-24258181 | Msa0540990:intron | 30.0% | |
| TTTCATTTATGGAGCTTACT+CGG | - | chr4_1:24258211-24258230 | None:intergenic | 30.0% | |
| ATGAACATGATTTGAATTGC+AGG | + | chr4_1:24258526-24258545 | Msa0540990:intron | 30.0% | |
| !!! | TTTCAATAGATTTTGGAACC+CGG | + | chr4_1:24258695-24258714 | Msa0540990:CDS | 30.0% |
| TTGAATTGAACCATGGAAGA+AGG | + | chr4_1:24254942-24254961 | Msa0540990:intron | 35.0% | |
| TGAATTGAACCATGGAAGAA+GGG | + | chr4_1:24254943-24254962 | Msa0540990:intron | 35.0% | |
| CATATATATCCCTTCTTCCA+TGG | - | chr4_1:24254955-24254974 | None:intergenic | 35.0% | |
| ! | GATGATACATGTTTGGTCTT+TGG | + | chr4_1:24255348-24255367 | Msa0540990:intron | 35.0% |
| AATTCCACAACAATGCATGT+AGG | - | chr4_1:24255382-24255401 | None:intergenic | 35.0% | |
| !! | AAGCGACACTCATTTTGAAA+CGG | - | chr4_1:24255441-24255460 | None:intergenic | 35.0% |
| ! | GTGTACAGAGTATTAATTGG+AGG | - | chr4_1:24255542-24255561 | None:intergenic | 35.0% |
| TATAACACAAGGTGATCATG+TGG | + | chr4_1:24255669-24255688 | Msa0540990:intron | 35.0% | |
| ATAACACAAGGTGATCATGT+GGG | + | chr4_1:24255670-24255689 | Msa0540990:intron | 35.0% | |
| AAGCTAGCTAAAGGGAAAAT+TGG | + | chr4_1:24255778-24255797 | Msa0540990:CDS | 35.0% | |
| TACCTTCAAATTCCTTACAG+TGG | - | chr4_1:24255848-24255867 | None:intergenic | 35.0% | |
| GAGAAACAACATACATGACA+AGG | - | chr4_1:24255890-24255909 | None:intergenic | 35.0% | |
| TTGGACTTAAGAACACAACA+AGG | + | chr4_1:24255978-24255997 | Msa0540990:CDS | 35.0% | |
| GCCTTTATGAGATATCATTG+TGG | + | chr4_1:24256093-24256112 | Msa0540990:intron | 35.0% | |
| TTGTAAGAGAACTGAAAGCA+CGG | - | chr4_1:24256310-24256329 | None:intergenic | 35.0% | |
| TAAGATATCCTTCAATTGGG+TGG | + | chr4_1:24256343-24256362 | Msa0540990:intron | 35.0% | |
| AGAAAGATATGTCCTGCAAA+AGG | - | chr4_1:24256416-24256435 | None:intergenic | 35.0% | |
| !! | GTCAGACTTTTGATTCAAAC+AGG | + | chr4_1:24256763-24256782 | Msa0540990:CDS | 35.0% |
| !!! | GGACAAACAGTTTTGTTTGT+TGG | + | chr4_1:24256819-24256838 | Msa0540990:CDS | 35.0% |
| TTGCTTATCAACCTTGGATA+TGG | + | chr4_1:24256922-24256941 | Msa0540990:CDS | 35.0% | |
| ! | ATGGATTGACGATTATTTGC+AGG | + | chr4_1:24257088-24257107 | Msa0540990:intron | 35.0% |
| TGGATTGACGATTATTTGCA+GGG | + | chr4_1:24257089-24257108 | Msa0540990:intron | 35.0% | |
| GTGATGCTTTATAAGGAGTA+TGG | - | chr4_1:24257151-24257170 | None:intergenic | 35.0% | |
| ACCATACATACATGCATATG+TGG | + | chr4_1:24257272-24257291 | Msa0540990:intron | 35.0% | |
| TCCACATATGCATGTATGTA+TGG | - | chr4_1:24257276-24257295 | None:intergenic | 35.0% | |
| ! | GCTGATTCTATGATTTCCAA+TGG | + | chr4_1:24257307-24257326 | Msa0540990:intron | 35.0% |
| CACTATTAGATGTTAGTGCA+AGG | - | chr4_1:24257452-24257471 | None:intergenic | 35.0% | |
| CTTGCACTAACATCTAATAG+TGG | + | chr4_1:24257450-24257469 | Msa0540990:intron | 35.0% | |
| AATTTGACCTTGTAACCTGA+AGG | - | chr4_1:24257593-24257612 | None:intergenic | 35.0% | |
| AATATACACCACAATATGCG+TGG | + | chr4_1:24257750-24257769 | Msa0540990:CDS | 35.0% | |
| GTTTCTTTCCTGTTAACTCT+CGG | - | chr4_1:24257791-24257810 | None:intergenic | 35.0% | |
| TTAACAGGAAAGAAACTCCT+TGG | + | chr4_1:24257795-24257814 | Msa0540990:CDS | 35.0% | |
| ! | TAGCTGTTGCTATTATACCA+AGG | - | chr4_1:24257842-24257861 | None:intergenic | 35.0% |
| TAGCAACAGCTATCATTACA+TGG | + | chr4_1:24257850-24257869 | Msa0540990:CDS | 35.0% | |
| AACAGCTATCATTACATGGA+AGG | + | chr4_1:24257854-24257873 | Msa0540990:CDS | 35.0% | |
| ACAGCTATCATTACATGGAA+GGG | + | chr4_1:24257855-24257874 | Msa0540990:CDS | 35.0% | |
| TGAGAGTAATGTTTGAGTCA+TGG | + | chr4_1:24257885-24257904 | Msa0540990:CDS | 35.0% | |
| !! | AAAGTTGATGTTGTGTTTGC+TGG | + | chr4_1:24257920-24257939 | Msa0540990:CDS | 35.0% |
| AGTACTTACAGATCTTTCGT+AGG | - | chr4_1:24257957-24257976 | None:intergenic | 35.0% | |
| TCACATGAATCAGTACTCTT+TGG | - | chr4_1:24258047-24258066 | None:intergenic | 35.0% | |
| AAGCGATATATGTTTGTGTC+AGG | + | chr4_1:24258068-24258087 | Msa0540990:intron | 35.0% | |
| TACATAAACATTGGAGATGG+AGG | + | chr4_1:24258165-24258184 | Msa0540990:intron | 35.0% | |
| ACATAAACATTGGAGATGGA+GGG | + | chr4_1:24258166-24258185 | Msa0540990:intron | 35.0% | |
| ATTACAGAAAGAGAAATCGG+TGG | - | chr4_1:24258389-24258408 | None:intergenic | 35.0% | |
| AAAAATTGCATGTCCAAAGC+TGG | - | chr4_1:24258592-24258611 | None:intergenic | 35.0% | |
| ! | TTGGTGTTTGTGTGTAATGG+AGG | + | chr4_1:24254797-24254816 | Msa0540990:CDS | 40.0% |
| !!! | GATGTTTTTAAGGTTCCTCC+TGG | + | chr4_1:24254878-24254897 | Msa0540990:CDS | 40.0% |
| TGCGATGAAAATACACTCGT+GGG | + | chr4_1:24255148-24255167 | Msa0540990:intron | 40.0% | |
| CATTCCTACATGCATTGTTG+TGG | + | chr4_1:24255375-24255394 | Msa0540990:intron | 40.0% | |
| AGGGAGTAAAACTTACAGCA+AGG | - | chr4_1:24255418-24255437 | None:intergenic | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr4_1:24255437-24255456 | None:intergenic | 40.0% |
| TAACACAAGGTGATCATGTG+GGG | + | chr4_1:24255671-24255690 | Msa0540990:intron | 40.0% | |
| AAGCACAAGAAGCTAGCTAA+AGG | + | chr4_1:24255769-24255788 | Msa0540990:CDS | 40.0% | |
| AGCACAAGAAGCTAGCTAAA+GGG | + | chr4_1:24255770-24255789 | Msa0540990:CDS | 40.0% | |
| TTATTCATCACGCCACTGTA+AGG | + | chr4_1:24255833-24255852 | Msa0540990:CDS | 40.0% | |
| CATACATGACAAGGGAGTAA+TGG | - | chr4_1:24255881-24255900 | None:intergenic | 40.0% | |
| ! | AGAACACAACAAGGCAGTTT+TGG | + | chr4_1:24255987-24256006 | Msa0540990:CDS | 40.0% |
| TTTACAACTCCTCCTGCAAT+TGG | + | chr4_1:24256010-24256029 | Msa0540990:CDS | 40.0% | |
| CCTATGAGACCAAATGTGTA+TGG | - | chr4_1:24256046-24256065 | None:intergenic | 40.0% | |
| CCATACACATTTGGTCTCAT+AGG | + | chr4_1:24256043-24256062 | Msa0540990:CDS | 40.0% | |
| ATATCCTTCAATTGGGTGGA+TGG | + | chr4_1:24256347-24256366 | Msa0540990:intron | 40.0% | |
| ATCTGACGACTTTGACTGAT+TGG | + | chr4_1:24256549-24256568 | Msa0540990:intron | 40.0% | |
| AAGGATGCTACATCAGTTAG+TGG | - | chr4_1:24256729-24256748 | None:intergenic | 40.0% | |
| ! | ACTGATGTAGCATCCTTTTC+AGG | + | chr4_1:24256732-24256751 | Msa0540990:intron | 40.0% |
| ACCCGAATGATGACAATGTT+CGG | + | chr4_1:24256865-24256884 | Msa0540990:CDS | 40.0% | |
| ACCGAACATTGTCATCATTC+GGG | - | chr4_1:24256869-24256888 | None:intergenic | 40.0% | |
| CACCGAACATTGTCATCATT+CGG | - | chr4_1:24256870-24256889 | None:intergenic | 40.0% | |
| GAATGATGACAATGTTCGGT+GGG | + | chr4_1:24256869-24256888 | Msa0540990:CDS | 40.0% | |
| TTTCCAACAGTCCATATCCA+AGG | - | chr4_1:24256936-24256955 | None:intergenic | 40.0% | |
| !! | CACAAAGTACTTCACCCTTT+TGG | + | chr4_1:24257168-24257187 | Msa0540990:CDS | 40.0% |
| TTGGCCTCATATTCAGCATA+TGG | + | chr4_1:24257227-24257246 | Msa0540990:CDS | 40.0% | |
| AGTACTGTGACATGGAAACA+TGG | - | chr4_1:24257416-24257435 | None:intergenic | 40.0% | |
| ! | TAACATGCCTTCAGGTTACA+AGG | + | chr4_1:24257583-24257602 | Msa0540990:intron | 40.0% |
| TGCATGAGAACAATCAACCA+AGG | - | chr4_1:24257815-24257834 | None:intergenic | 40.0% | |
| TTGTTCTCATGCATTCACCT+TGG | + | chr4_1:24257822-24257841 | Msa0540990:CDS | 40.0% | |
| CAGCTATCATTACATGGAAG+GGG | + | chr4_1:24257856-24257875 | Msa0540990:CDS | 40.0% | |
| ATCTTTCGTAGGCATGTACA+TGG | - | chr4_1:24257946-24257965 | None:intergenic | 40.0% | |
| ! | GGAGCTGATAGATCTTTTAC+GGG | - | chr4_1:24258141-24258160 | None:intergenic | 40.0% |
| ! | GGGAGCTGATAGATCTTTTA+CGG | - | chr4_1:24258142-24258161 | None:intergenic | 40.0% |
| GCTCCCGTATACATAAACAT+TGG | + | chr4_1:24258156-24258175 | Msa0540990:intron | 40.0% | |
| TCTCTAAATGCTGAGTACTC+TGG | - | chr4_1:24258567-24258586 | None:intergenic | 40.0% | |
| AGCTGGCATAGAAATCAAGA+TGG | + | chr4_1:24258642-24258661 | Msa0540990:CDS | 40.0% | |
| CTGTTAAGAGTGATTCCCTT+TGG | + | chr4_1:24258670-24258689 | Msa0540990:CDS | 40.0% | |
| ! | TGAGGTTTGGAATCATCAAC+CGG | - | chr4_1:24258717-24258736 | None:intergenic | 40.0% |
| !! | GTTGATGATTCCAAACCTCA+TGG | + | chr4_1:24258717-24258736 | Msa0540990:CDS | 40.0% |
| !! | TGTTGAGGAGCATTATAGCC+AGG | - | chr4_1:24254899-24254918 | None:intergenic | 45.0% |
| TGGCTATAATGCTCCTCAAC+AGG | + | chr4_1:24254898-24254917 | Msa0540990:CDS | 45.0% | |
| CTGCGATGAAAATACACTCG+TGG | + | chr4_1:24255147-24255166 | Msa0540990:intron | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr4_1:24255438-24255457 | None:intergenic | 45.0% |
| GAAAGCAGTGATCGTATCGT+GGG | + | chr4_1:24255693-24255712 | Msa0540990:intron | 45.0% | |
| CGCCACTGTAAGGAATTTGA+AGG | + | chr4_1:24255843-24255862 | Msa0540990:CDS | 45.0% | |
| CCAAATGTGTATGGCACATC+AGG | - | chr4_1:24256037-24256056 | None:intergenic | 45.0% | |
| CCTGATGTGCCATACACATT+TGG | + | chr4_1:24256034-24256053 | Msa0540990:CDS | 45.0% | |
| GTTCCAGTGAAGCACAGATA+CGG | + | chr4_1:24256139-24256158 | Msa0540990:intron | 45.0% | |
| TTTCCGTATCTGTGCTTCAC+TGG | - | chr4_1:24256145-24256164 | None:intergenic | 45.0% | |
| GTGAAGCACAGATACGGAAA+AGG | + | chr4_1:24256145-24256164 | Msa0540990:intron | 45.0% | |
| !!! | GCATCCTTTTCAGGTGATCT+TGG | + | chr4_1:24256741-24256760 | Msa0540990:intron | 45.0% |
| CTGACCAAGATCACCTGAAA+AGG | - | chr4_1:24256748-24256767 | None:intergenic | 45.0% | |
| CGAATGATGACAATGTTCGG+TGG | + | chr4_1:24256868-24256887 | Msa0540990:CDS | 45.0% | |
| ! | ACAATGTTCGGTGGGATACT+TGG | + | chr4_1:24256877-24256896 | Msa0540990:CDS | 45.0% |
| ! | CAATGTTCGGTGGGATACTT+GGG | + | chr4_1:24256878-24256897 | Msa0540990:CDS | 45.0% |
| ! | AATGTTCGGTGGGATACTTG+GGG | + | chr4_1:24256879-24256898 | Msa0540990:CDS | 45.0% |
| !! | GGAGTGTTGCTTATCAACCT+TGG | + | chr4_1:24256916-24256935 | Msa0540990:CDS | 45.0% |
| ! | CAACCTTGGATATGGACTGT+TGG | + | chr4_1:24256930-24256949 | Msa0540990:CDS | 45.0% |
| CTGGAGCGAAATCAAGTTCA+TGG | - | chr4_1:24256959-24256978 | None:intergenic | 45.0% | |
| !! | GTATGGTATCGGTGCGAAAA+AGG | - | chr4_1:24257134-24257153 | None:intergenic | 45.0% |
| TTCGGCACACATCATTGTCT+TGG | + | chr4_1:24257208-24257227 | Msa0540990:CDS | 45.0% | |
| ACCTCTATGCTAAAACCACG+TGG | + | chr4_1:24257616-24257635 | Msa0540990:intron | 45.0% | |
| !!! | TCCACGTGGTTTTAGCATAG+AGG | - | chr4_1:24257620-24257639 | None:intergenic | 45.0% |
| AGAGAGATCATTTGTCCACG+TGG | - | chr4_1:24257634-24257653 | None:intergenic | 45.0% | |
| TCTTCAAGCCACGCATATTG+TGG | - | chr4_1:24257761-24257780 | None:intergenic | 45.0% | |
| AAGAGCTACCGAGAGTTAAC+AGG | + | chr4_1:24257780-24257799 | Msa0540990:CDS | 45.0% | |
| GCATTTAGAGAAGCCAGCTT+TGG | + | chr4_1:24258576-24258595 | Msa0540990:CDS | 45.0% | |
| GGACACATGCTTACTATAGC+TGG | + | chr4_1:24258625-24258644 | Msa0540990:CDS | 45.0% | |
| ! | GAGGTTTGGAATCATCAACC+GGG | - | chr4_1:24258716-24258735 | None:intergenic | 45.0% |
| TCAATGGGAACCATGAGGTT+TGG | - | chr4_1:24258730-24258749 | None:intergenic | 45.0% | |
| !! | TTATTGAATATTTATATTAT+TGG | - | chr4_1:24256382-24256401 | None:intergenic | 5.0% |
| !! | TGAGGAGCATTATAGCCAGG+AGG | - | chr4_1:24254896-24254915 | None:intergenic | 50.0% |
| GGAAAGCAGTGATCGTATCG+TGG | + | chr4_1:24255692-24255711 | Msa0540990:intron | 50.0% | |
| ACATCAGGACCAATTGCAGG+AGG | - | chr4_1:24256022-24256041 | None:intergenic | 50.0% | |
| !! | ACGACACAGACACTGACTTG+CGG | + | chr4_1:24256177-24256196 | Msa0540990:intron | 50.0% |
| !! | TGTCGGTGTCGTGTTTGTGT+CGG | + | chr4_1:24256248-24256267 | Msa0540990:intron | 50.0% |
| !! | TCCTCGGATTAGAGGTGTCT+CGG | - | chr4_1:24256283-24256302 | None:intergenic | 50.0% |
| GACTCCATCCACCCAATTGA+AGG | - | chr4_1:24256354-24256373 | None:intergenic | 50.0% | |
| CGGTGCGAAAAAGGCTTGAA+TGG | - | chr4_1:24257125-24257144 | None:intergenic | 50.0% | |
| GGAGATGGAGGGAATATCGA+AGG | + | chr4_1:24258177-24258196 | Msa0540990:intron | 50.0% | |
| AATGCTGAGTACTCTGGCTG+TGG | - | chr4_1:24258561-24258580 | None:intergenic | 50.0% | |
| GATCGTATCGTGGGTGACTG+AGG | + | chr4_1:24255702-24255721 | Msa0540990:intron | 55.0% | |
| TGGGTGACTGAGGATGAACC+AGG | + | chr4_1:24255712-24255731 | Msa0540990:intron | 55.0% | |
| GGGTGACTGAGGATGAACCA+GGG | + | chr4_1:24255713-24255732 | Msa0540990:intron | 55.0% | |
| GACTGAGGATGAACCAGGGT+CGG | + | chr4_1:24255717-24255736 | Msa0540990:intron | 55.0% | |
| GGCACATCAGGACCAATTGC+AGG | - | chr4_1:24256025-24256044 | None:intergenic | 55.0% | |
| GTCAGTGTCTGTGTCGTGTC+TGG | - | chr4_1:24256174-24256193 | None:intergenic | 55.0% | |
| ACCGAGACACCTCTAATCCG+AGG | + | chr4_1:24256279-24256298 | Msa0540990:intron | 55.0% | |
| ! | ACGGACACTCCTCGGATTAG+AGG | - | chr4_1:24256291-24256310 | None:intergenic | 55.0% |
| ! | CTGAAAGCACGGACACTCCT+CGG | - | chr4_1:24256299-24256318 | None:intergenic | 55.0% |
| TTCGGTGGGATACTTGGGGA+AGG | + | chr4_1:24256883-24256902 | Msa0540990:CDS | 55.0% | |
| CTTGGGGAAGGTTTGCAGAG+AGG | + | chr4_1:24256895-24256914 | Msa0540990:CDS | 55.0% | |
| TAACGCACTGCATCCGACCC+TGG | - | chr4_1:24255733-24255752 | None:intergenic | 60.0% | |
| GGTCGGATGCAGTGCGTTAC+TGG | + | chr4_1:24255734-24255753 | Msa0540990:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 24254734 | 24258749 | 24254734 | ID=Msa0540990;Name=Msa0540990 |
| chr4_1 | mRNA | 24254734 | 24258749 | 24254734 | ID=Msa0540990-mRNA-1;Parent=Msa0540990;Name=Msa0540990-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0.71|0.5|1|1|1|8|0|415 |
| chr4_1 | exon | 24254734 | 24254919 | 24254734 | ID=Msa0540990-mRNA-1:exon:6634;Parent=Msa0540990-mRNA-1 |
| chr4_1 | exon | 24255724 | 24255864 | 24255724 | ID=Msa0540990-mRNA-1:exon:6635;Parent=Msa0540990-mRNA-1 |
| chr4_1 | exon | 24255953 | 24256064 | 24255953 | ID=Msa0540990-mRNA-1:exon:6636;Parent=Msa0540990-mRNA-1 |
| chr4_1 | exon | 24256754 | 24256983 | 24256754 | ID=Msa0540990-mRNA-1:exon:6637;Parent=Msa0540990-mRNA-1 |
| chr4_1 | exon | 24257110 | 24257248 | 24257110 | ID=Msa0540990-mRNA-1:exon:6638;Parent=Msa0540990-mRNA-1 |
| chr4_1 | exon | 24257747 | 24257967 | 24257747 | ID=Msa0540990-mRNA-1:exon:6639;Parent=Msa0540990-mRNA-1 |
| chr4_1 | exon | 24258090 | 24258126 | 24258090 | ID=Msa0540990-mRNA-1:exon:6640;Parent=Msa0540990-mRNA-1 |
| chr4_1 | exon | 24258568 | 24258749 | 24258568 | ID=Msa0540990-mRNA-1:exon:6641;Parent=Msa0540990-mRNA-1 |
| chr4_1 | CDS | 24254734 | 24254919 | 24254734 | ID=Msa0540990-mRNA-1:cds;Parent=Msa0540990-mRNA-1 |
| chr4_1 | CDS | 24255724 | 24255864 | 24255724 | ID=Msa0540990-mRNA-1:cds;Parent=Msa0540990-mRNA-1 |
| chr4_1 | CDS | 24255953 | 24256064 | 24255953 | ID=Msa0540990-mRNA-1:cds;Parent=Msa0540990-mRNA-1 |
| chr4_1 | CDS | 24256754 | 24256983 | 24256754 | ID=Msa0540990-mRNA-1:cds;Parent=Msa0540990-mRNA-1 |
| chr4_1 | CDS | 24257110 | 24257248 | 24257110 | ID=Msa0540990-mRNA-1:cds;Parent=Msa0540990-mRNA-1 |
| chr4_1 | CDS | 24257747 | 24257967 | 24257747 | ID=Msa0540990-mRNA-1:cds;Parent=Msa0540990-mRNA-1 |
| chr4_1 | CDS | 24258090 | 24258126 | 24258090 | ID=Msa0540990-mRNA-1:cds;Parent=Msa0540990-mRNA-1 |
| chr4_1 | CDS | 24258568 | 24258749 | 24258568 | ID=Msa0540990-mRNA-1:cds;Parent=Msa0540990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
