Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0597040 | XP_013442399.1 | 97.028 | 471 | 13 | 1 | 1 | 470 | 1 | 471 | 0.0 | 950 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0597040 | sp|Q09131|PPAF_SOYBN | 82.812 | 448 | 77 | 0 | 23 | 470 | 17 | 464 | 0.0 | 793 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0597040 | A0A072TFW4 | 97.028 | 471 | 13 | 1 | 1 | 470 | 1 | 471 | 0.0 | 950 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0220740 | Msa0597040 | 0.806464 | 8.121595e-50 | -8.615850e-47 |
| Msa0434000 | Msa0597040 | 0.816904 | 4.348489e-52 | -8.615850e-47 |
| Msa0540990 | Msa0597040 | 0.909303 | 6.608275e-82 | -8.615850e-47 |
| Msa0597040 | Msa0636350 | 0.843339 | 1.489026e-58 | -8.615850e-47 |
| Msa0597040 | Msa0675690 | 0.947171 | 1.128277e-105 | -8.615850e-47 |
| Msa0597040 | Msa0913060 | 0.813729 | 2.208477e-51 | -8.615850e-47 |
| Msa0597040 | Msa0916690 | 0.861355 | 1.087554e-63 | -8.615850e-47 |
| Msa0597040 | Msa0925870 | 0.801728 | 7.853047e-49 | -8.615850e-47 |
| Msa0597040 | Msa0967280 | 0.801894 | 7.258896e-49 | -8.615850e-47 |
| Msa0597040 | Msa0998680 | 0.819994 | 8.668361e-53 | -8.615850e-47 |
| Msa0597040 | Msa1108760 | 0.800727 | 1.258622e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0597040 | MtrunA17_Chr4g0019091 | 86.830 | 448 | 59 | 0 | 23 | 470 | 18 | 465 | 0.0 | 830 |
| Msa0597040 | MtrunA17_Chr1g0211041 | 83.011 | 465 | 78 | 1 | 7 | 470 | 3 | 467 | 0.0 | 800 |
| Msa0597040 | MtrunA17_Chr4g0019071 | 98.026 | 304 | 6 | 0 | 167 | 470 | 39 | 342 | 0.0 | 630 |
| Msa0597040 | MtrunA17_Chr4g0064541 | 61.574 | 432 | 163 | 2 | 28 | 458 | 23 | 452 | 0.0 | 555 |
| Msa0597040 | MtrunA17_Chr3g0098721 | 41.986 | 443 | 221 | 14 | 14 | 453 | 1 | 410 | 8.59e-102 | 311 |
| Msa0597040 | MtrunA17_Chr5g0443881 | 40.455 | 440 | 229 | 11 | 30 | 467 | 22 | 430 | 1.89e-100 | 308 |
| Msa0597040 | MtrunA17_Chr4g0019081 | 88.235 | 170 | 19 | 1 | 1 | 169 | 1 | 170 | 1.01e-98 | 293 |
| Msa0597040 | MtrunA17_Chr7g0266151 | 40.674 | 445 | 225 | 13 | 22 | 461 | 14 | 424 | 1.68e-96 | 297 |
| Msa0597040 | MtrunA17_Chr1g0178831 | 41.772 | 395 | 203 | 8 | 60 | 453 | 46 | 414 | 4.77e-96 | 296 |
| Msa0597040 | MtrunA17_Chr7g0266131 | 41.266 | 395 | 205 | 8 | 60 | 453 | 54 | 422 | 1.87e-94 | 292 |
| Msa0597040 | MtrunA17_Chr3g0121411 | 37.313 | 402 | 177 | 9 | 114 | 456 | 143 | 528 | 2.23e-75 | 246 |
| Msa0597040 | MtrunA17_Chr3g0121431 | 36.816 | 402 | 179 | 8 | 114 | 456 | 198 | 583 | 3.14e-74 | 244 |
| Msa0597040 | MtrunA17_Chr7g0236041 | 34.862 | 436 | 202 | 10 | 87 | 456 | 108 | 527 | 1.98e-73 | 241 |
| Msa0597040 | MtrunA17_Chr6g0453731 | 31.650 | 515 | 250 | 14 | 41 | 469 | 52 | 550 | 5.21e-73 | 241 |
| Msa0597040 | MtrunA17_Chr4g0022251 | 27.865 | 384 | 212 | 15 | 60 | 396 | 216 | 581 | 3.19e-26 | 112 |
| Msa0597040 | MtrunA17_Chr1g0173511 | 25.500 | 400 | 217 | 17 | 58 | 396 | 77 | 456 | 5.01e-24 | 104 |
| Msa0597040 | MtrunA17_Chr3g0116051 | 27.198 | 364 | 218 | 15 | 118 | 448 | 249 | 598 | 8.09e-24 | 104 |
| Msa0597040 | MtrunA17_Chr4g0043001 | 25.225 | 444 | 263 | 14 | 59 | 445 | 143 | 574 | 7.14e-23 | 102 |
| Msa0597040 | MtrunA17_Chr4g0057551 | 26.954 | 371 | 210 | 16 | 118 | 448 | 253 | 602 | 1.45e-22 | 100 |
| Msa0597040 | MtrunA17_Chr5g0419621 | 26.667 | 375 | 206 | 15 | 118 | 448 | 245 | 594 | 4.84e-22 | 99.4 |
| Msa0597040 | MtrunA17_Chr8g0364481 | 25.956 | 366 | 220 | 14 | 118 | 448 | 238 | 587 | 6.48e-22 | 99.0 |
| Msa0597040 | MtrunA17_Chr4g0043021 | 24.664 | 446 | 261 | 17 | 60 | 445 | 144 | 574 | 2.18e-15 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0597040 | AT2G16430.2 | 75.431 | 464 | 113 | 1 | 1 | 464 | 1 | 463 | 0.0 | 745 |
| Msa0597040 | AT2G27190.1 | 69.451 | 455 | 134 | 1 | 4 | 458 | 9 | 458 | 0.0 | 674 |
| Msa0597040 | AT1G56360.1 | 63.124 | 461 | 161 | 4 | 9 | 463 | 1 | 458 | 0.0 | 608 |
| Msa0597040 | AT4G36350.1 | 61.842 | 456 | 166 | 4 | 13 | 463 | 6 | 458 | 0.0 | 596 |
| Msa0597040 | AT2G16430.1 | 80.712 | 337 | 65 | 0 | 128 | 464 | 7 | 343 | 0.0 | 587 |
| Msa0597040 | AT5G34850.1 | 58.720 | 453 | 181 | 3 | 7 | 458 | 4 | 451 | 0.0 | 558 |
| Msa0597040 | AT2G18130.1 | 55.195 | 462 | 181 | 5 | 6 | 464 | 2 | 440 | 0.0 | 522 |
| Msa0597040 | AT3G46120.1 | 47.930 | 459 | 152 | 9 | 7 | 458 | 3 | 381 | 2.32e-138 | 403 |
| Msa0597040 | AT1G52940.1 | 59.671 | 243 | 93 | 4 | 46 | 285 | 1 | 241 | 7.97e-103 | 307 |
| Msa0597040 | AT3G20500.1 | 40.541 | 444 | 227 | 12 | 12 | 453 | 6 | 414 | 2.68e-98 | 302 |
| Msa0597040 | AT3G52820.1 | 41.919 | 396 | 201 | 8 | 60 | 453 | 47 | 415 | 1.56e-96 | 298 |
| Msa0597040 | AT3G52810.1 | 39.207 | 454 | 237 | 10 | 4 | 453 | 1 | 419 | 1.06e-92 | 288 |
| Msa0597040 | AT3G52780.1 | 40.181 | 443 | 229 | 13 | 16 | 453 | 5 | 416 | 5.87e-92 | 286 |
| Msa0597040 | AT3G07130.1 | 35.476 | 420 | 198 | 11 | 94 | 456 | 115 | 518 | 2.07e-72 | 238 |
| Msa0597040 | AT3G07130.2 | 32.892 | 453 | 198 | 12 | 94 | 456 | 115 | 551 | 1.05e-65 | 221 |
| Msa0597040 | AT2G32770.3 | 30.682 | 528 | 241 | 14 | 24 | 442 | 12 | 523 | 1.08e-65 | 221 |
| Msa0597040 | AT4G13700.1 | 34.043 | 423 | 212 | 13 | 34 | 407 | 33 | 437 | 3.02e-63 | 212 |
| Msa0597040 | AT3G52780.2 | 37.784 | 352 | 194 | 12 | 16 | 362 | 5 | 336 | 8.14e-60 | 200 |
| Msa0597040 | AT2G32770.2 | 33.333 | 381 | 174 | 9 | 112 | 427 | 62 | 427 | 1.39e-57 | 196 |
| Msa0597040 | AT2G32770.1 | 28.220 | 528 | 225 | 15 | 24 | 442 | 12 | 494 | 4.90e-52 | 184 |
| Msa0597040 | AT4G13700.2 | 33.067 | 375 | 195 | 12 | 34 | 359 | 33 | 400 | 3.03e-51 | 179 |
| Msa0597040 | AT5G50400.2 | 26.124 | 356 | 222 | 14 | 118 | 443 | 165 | 509 | 2.37e-22 | 100 |
| Msa0597040 | AT5G50400.1 | 26.124 | 356 | 222 | 14 | 118 | 443 | 237 | 581 | 3.01e-22 | 100 |
| Msa0597040 | AT1G13750.1 | 27.397 | 365 | 206 | 14 | 118 | 443 | 239 | 583 | 3.06e-21 | 97.4 |
| Msa0597040 | AT2G03450.1 | 25.607 | 453 | 250 | 18 | 58 | 445 | 141 | 571 | 3.05e-20 | 94.4 |
| Msa0597040 | AT1G13900.1 | 25.661 | 378 | 212 | 13 | 118 | 445 | 213 | 571 | 1.49e-19 | 92.0 |
| Msa0597040 | AT4G24890.1 | 25.275 | 364 | 225 | 15 | 118 | 448 | 241 | 590 | 3.24e-19 | 90.9 |
Find 107 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGGAAACTTACAATTTC+TGG | 0.081307 | 4_2:-28847633 | None:intergenic |
| TGAGATATATACTCATTATT+AGG | 0.159298 | 4_2:+28845347 | Msa0597040:five_prime_UTR |
| CACCTAACATTGTCATGATT+TGG | 0.217023 | 4_2:-28847525 | None:intergenic |
| ATCTCCGATGTTTATGTATA+CGG | 0.235623 | 4_2:-28848841 | None:intergenic |
| TCCAACCTCATAATAATATT+TGG | 0.245668 | 4_2:-28846585 | None:intergenic |
| TTGCTTATCAACCTTGGATA+TGG | 0.250325 | 4_2:+28847580 | Msa0597040:CDS |
| GGTCGGATGCAGTGCGTTAC+TGG | 0.268473 | 4_2:+28846358 | Msa0597040:CDS |
| GTACTTTGTGATGCTTTATA+AGG | 0.272518 | 4_2:-28847834 | None:intergenic |
| ATTGCATATAATATCGTAAA+TGG | 0.285493 | 4_2:+28848786 | Msa0597040:CDS |
| TTATTCATCATGCCACTATA+AGG | 0.295631 | 4_2:+28846457 | Msa0597040:CDS |
| ATTTGAACAATTAATGGAAT+TGG | 0.296827 | 4_2:-28845271 | None:intergenic |
| CACAAAGTACTTCACCCTTT+TGG | 0.304317 | 4_2:+28847847 | Msa0597040:CDS |
| AGAACACAACAAGGCAGTTT+TGG | 0.305509 | 4_2:+28846612 | Msa0597040:CDS |
| GTGATGCTTTATAAGGAGTA+TGG | 0.325433 | 4_2:-28847827 | None:intergenic |
| CTGGAGCGAAATCAAGTTCA+TGG | 0.325613 | 4_2:-28847614 | None:intergenic |
| GAGATATATACTCATTATTA+GGG | 0.327736 | 4_2:+28845348 | Msa0597040:five_prime_UTR |
| AAAGTTGATGTTGTGTTTGC+TGG | 0.344435 | 4_2:+28848601 | Msa0597040:CDS |
| TACCTTCAAATTCCTTATAG+TGG | 0.355504 | 4_2:-28846469 | None:intergenic |
| ACCTAACATTGTCATGATTT+GGG | 0.368382 | 4_2:-28847524 | None:intergenic |
| AAGAGCTACCGAGAGTTAAC+AGG | 0.373690 | 4_2:+28848461 | Msa0597040:CDS |
| ACAATGTTAGGTGGGATACT+TGG | 0.374862 | 4_2:+28847535 | Msa0597040:CDS |
| TCAATGGGAACCATGAGGTT+TGG | 0.378926 | 4_2:-28850294 | None:intergenic |
| CACTTATGTTTCTTGACCGT+TGG | 0.382851 | 4_2:+28850428 | Msa0597040:three_prime_UTR |
| GTATGGTATCGGTGCGAAAA+AGG | 0.385639 | 4_2:-28847810 | None:intergenic |
| AATTTGGTGTTTGTGTGTAA+TGG | 0.386262 | 4_2:+28845456 | Msa0597040:CDS |
| TTTATTATTATCACTAGGTT+TGG | 0.389492 | 4_2:+28845428 | Msa0597040:CDS |
| AGATACTTCAATTACTCATC+TGG | 0.391362 | 4_2:+28846432 | Msa0597040:CDS |
| CCATACACATTTGGTCTCAT+AGG | 0.391563 | 4_2:+28846668 | Msa0597040:CDS |
| TTTACAACTCCTCCTGCAAT+TGG | 0.394407 | 4_2:+28846635 | Msa0597040:CDS |
| TCACATTGAGTATTCTTCAA+TGG | 0.396027 | 4_2:-28850310 | None:intergenic |
| GCATTTAGAGAAGCCAGCTT+TGG | 0.397912 | 4_2:+28850143 | Msa0597040:CDS |
| GAAAATGATAATCTTTGAAA+TGG | 0.399082 | 4_2:-28845402 | None:intergenic |
| CTGTTAAGAGTGATTCCCTT+TGG | 0.403017 | 4_2:+28850237 | Msa0597040:CDS |
| CCAAATGTGTATGGCACATC+AGG | 0.405903 | 4_2:-28846659 | None:intergenic |
| CACATTGAGTATTCTTCAAT+GGG | 0.411131 | 4_2:-28850309 | None:intergenic |
| CCTGATGTGCCATACACATT+TGG | 0.422920 | 4_2:+28846659 | Msa0597040:CDS |
| GGCACATCAGGACCAATTGC+AGG | 0.425315 | 4_2:-28846647 | None:intergenic |
| ACCCAAATCATGACAATGTT+AGG | 0.431662 | 4_2:+28847523 | Msa0597040:CDS |
| TGAGGTTTGGAATCATCAAC+CGG | 0.433017 | 4_2:-28850281 | None:intergenic |
| CAATGTTAGGTGGGATACTT+GGG | 0.445086 | 4_2:+28847536 | Msa0597040:CDS |
| TTGGCCTCATATTCAGCATA+TGG | 0.449605 | 4_2:+28847906 | Msa0597040:CDS |
| ACCAAATATTATTATGAGGT+TGG | 0.454862 | 4_2:+28846584 | Msa0597040:CDS |
| GGACAAACAGTGTTGTTTGT+TGG | 0.465570 | 4_2:+28847477 | Msa0597040:CDS |
| AGTGTGGAATATTCAGATAA+GGG | 0.466665 | 4_2:-28845243 | None:intergenic |
| TATCAATTGAATTCAACAAA+TGG | 0.478670 | 4_2:+28847456 | Msa0597040:CDS |
| TGGTTATAATGCTCCTCAGC+AGG | 0.481288 | 4_2:+28845560 | Msa0597040:CDS |
| TTCAGCACACATCATTGTCT+TGG | 0.481429 | 4_2:+28847887 | Msa0597040:CDS |
| AATACCATATGCTGAATATG+AGG | 0.494395 | 4_2:-28847910 | None:intergenic |
| TCTCTAAATGCTGAGTACTC+TGG | 0.496127 | 4_2:-28850131 | None:intergenic |
| AGCACAAGAAGCTAGCTAAA+GGG | 0.498611 | 4_2:+28846394 | Msa0597040:CDS |
| CAATACCAAATATTATTATG+AGG | 0.502409 | 4_2:+28846580 | Msa0597040:CDS |
| CCTATGAGACCAAATGTGTA+TGG | 0.507863 | 4_2:-28846668 | None:intergenic |
| CAACCTTGGATATGGACTGT+TGG | 0.510685 | 4_2:+28847588 | Msa0597040:CDS |
| TAGTGTGGAATATTCAGATA+AGG | 0.513190 | 4_2:-28845244 | None:intergenic |
| GGACACATGCTTACTATAGC+TGG | 0.517434 | 4_2:+28850192 | Msa0597040:CDS |
| TCTTCAAGCCATGTGTATTG+TGG | 0.521338 | 4_2:-28848439 | None:intergenic |
| AAGCACAAGAAGCTAGCTAA+AGG | 0.523147 | 4_2:+28846393 | Msa0597040:CDS |
| TCTCCGATGTTTATGTATAC+GGG | 0.526279 | 4_2:-28848840 | None:intergenic |
| TGAGAGTAATGTTTGAGTCA+TGG | 0.529431 | 4_2:+28848566 | Msa0597040:CDS |
| GGAGTGTTGCTTATCAACCT+TGG | 0.535303 | 4_2:+28847574 | Msa0597040:CDS |
| TGGGTGACTGAGGATGAACC+AGG | 0.542544 | 4_2:+28846336 | Msa0597040:CDS |
| TGCCACTATAAGGAATTTGA+AGG | 0.542571 | 4_2:+28846467 | Msa0597040:CDS |
| ATCTTTCGTAGGCATGTACA+TGG | 0.549448 | 4_2:-28848624 | None:intergenic |
| ACAGCTATCATTACATGGAA+GGG | 0.559696 | 4_2:+28848536 | Msa0597040:CDS |
| AACAGCTATCATTACATGGA+AGG | 0.564929 | 4_2:+28848535 | Msa0597040:CDS |
| TACATAAACATCGGAGATGG+AGG | 0.568213 | 4_2:+28848846 | Msa0597040:CDS |
| AATGCTGAGTACTCTGGCTG+TGG | 0.569296 | 4_2:-28850125 | None:intergenic |
| CTTTATAAGGAGTATGGTAT+CGG | 0.573117 | 4_2:-28847821 | None:intergenic |
| AATGGAATTGGCATATAGTG+TGG | 0.573258 | 4_2:-28845259 | None:intergenic |
| CAGCTATCATTACATGGAAG+GGG | 0.582038 | 4_2:+28848537 | Msa0597040:CDS |
| CAAATCATGACAATGTTAGG+TGG | 0.582738 | 4_2:+28847526 | Msa0597040:CDS |
| TTGTTCTCATGCATTCACCT+TGG | 0.582761 | 4_2:+28848503 | Msa0597040:CDS |
| GTTGATGATTCCAAACCTCA+TGG | 0.582800 | 4_2:+28850284 | Msa0597040:CDS |
| TAGCAACAGCTATCATTACA+TGG | 0.590375 | 4_2:+28848531 | Msa0597040:CDS |
| TTGGTGTTTGTGTGTAATGG+AGG | 0.590798 | 4_2:+28845459 | Msa0597040:CDS |
| GACTGAGGATGAACCAGGGT+CGG | 0.592220 | 4_2:+28846341 | Msa0597040:CDS |
| TAACGCACTGCATCCGACCC+TGG | 0.593203 | 4_2:-28846354 | None:intergenic |
| TTAGGTGGGATACTTGGGGA+AGG | 0.593341 | 4_2:+28847541 | Msa0597040:CDS |
| GAAAGCAGTGATCGTATCGT+GGG | 0.600675 | 4_2:+28846317 | Msa0597040:CDS |
| TGCTGAGGAGCATTATAACC+AGG | 0.603954 | 4_2:-28845558 | None:intergenic |
| AAATCATGACAATGTTAGGT+GGG | 0.605681 | 4_2:+28847527 | Msa0597040:CDS |
| GTATACATAAACATCGGAGA+TGG | 0.606702 | 4_2:+28848843 | Msa0597040:CDS |
| CTTGGGGAAGGTTTGCAGAG+AGG | 0.615319 | 4_2:+28847553 | Msa0597040:CDS |
| ATAACACAAGGTGATCATGT+GGG | 0.617402 | 4_2:+28846294 | Msa0597040:CDS |
| TTTCCAACAGTCCATATCCA+AGG | 0.618073 | 4_2:-28847591 | None:intergenic |
| TATAACACAAGGTGATCATG+TGG | 0.618384 | 4_2:+28846293 | Msa0597040:CDS |
| GGAAAGCAGTGATCGTATCG+TGG | 0.618795 | 4_2:+28846316 | Msa0597040:CDS |
| TAACACAAGGTGATCATGTG+GGG | 0.622210 | 4_2:+28846295 | Msa0597040:CDS |
| GTGTGGAATATTCAGATAAG+GGG | 0.622272 | 4_2:-28845242 | None:intergenic |
| AGTACTTACAGATCTTTCGT+AGG | 0.631526 | 4_2:-28848635 | None:intergenic |
| TCTAGTTTATTATTATCACT+AGG | 0.632946 | 4_2:+28845423 | Msa0597040:CDS |
| AGCTGGCATAGAAATCAAGA+TGG | 0.638512 | 4_2:+28850209 | Msa0597040:CDS |
| GGAGATGGAGGGAATATCGA+AGG | 0.640067 | 4_2:+28848858 | Msa0597040:CDS |
| GATCGTATCGTGGGTGACTG+AGG | 0.654687 | 4_2:+28846326 | Msa0597040:CDS |
| ACATAAACATCGGAGATGGA+GGG | 0.656509 | 4_2:+28848847 | Msa0597040:CDS |
| GAGGTTTGGAATCATCAACC+GGG | 0.673172 | 4_2:-28850280 | None:intergenic |
| AATATACACCACAATACACA+TGG | 0.674739 | 4_2:+28848431 | Msa0597040:CDS |
| ATTCTTCAATGGGAACCATG+AGG | 0.678851 | 4_2:-28850299 | None:intergenic |
| TGCATGAGAACAATCAACCA+AGG | 0.682000 | 4_2:-28848493 | None:intergenic |
| ACATCAGGACCAATTGCAGG+AGG | 0.687083 | 4_2:-28846644 | None:intergenic |
| ATGAAGGTTCATATAACACA+AGG | 0.696049 | 4_2:+28846282 | Msa0597040:intron |
| TAGCTGTTGCTATTATACCA+AGG | 0.710700 | 4_2:-28848520 | None:intergenic |
| GCTCCCGTATACATAAACAT+CGG | 0.723543 | 4_2:+28848837 | Msa0597040:CDS |
| GGGTGACTGAGGATGAACCA+GGG | 0.725248 | 4_2:+28846337 | Msa0597040:CDS |
| AATGTTAGGTGGGATACTTG+GGG | 0.732363 | 4_2:+28847537 | Msa0597040:CDS |
| TTGGACTTAAGAACACAACA+AGG | 0.748770 | 4_2:+28846603 | Msa0597040:CDS |
| TGAGGAGCATTATAACCAGG+AGG | 0.749826 | 4_2:-28845555 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAATTGTAATTAAAATATA+GGG | + | chr4_2:28845859-28845878 | Msa0597040:intron | 10.0% |
| !! | TGAAAAAAAAAAAAAATACA+AGG | + | chr4_2:28846064-28846083 | Msa0597040:intron | 10.0% |
| !!! | AGTTTAAATCTTTTAATATA+TGG | + | chr4_2:28846250-28846269 | Msa0597040:intron | 10.0% |
| !!! | TTATTTAATTTTTAACTTCA+GGG | - | chr4_2:28848231-28848250 | None:intergenic | 10.0% |
| !!! | TTTATTTAATTTTTAACTTC+AGG | - | chr4_2:28848232-28848251 | None:intergenic | 10.0% |
| !!! | AGTTAATATTTATTTTTTGA+AGG | - | chr4_2:28849830-28849849 | None:intergenic | 10.0% |
| !! | AATATGATTTGAACAATTAA+TGG | - | chr4_2:28845280-28845299 | None:intergenic | 15.0% |
| !! | GTGAATTGTAATTAAAATAT+AGG | + | chr4_2:28845858-28845877 | Msa0597040:intron | 15.0% |
| !!! | TGATTTTCTCAAATTATTAA+CGG | - | chr4_2:28846831-28846850 | None:intergenic | 15.0% |
| !! | AATCATAATAACTAATCATT+TGG | + | chr4_2:28847141-28847160 | Msa0597040:intron | 15.0% |
| !!! | TTTCAAAATATTTTGTGAAA+AGG | - | chr4_2:28848683-28848702 | None:intergenic | 15.0% |
| !! | AATATTACAAAAAGAGAAAT+CGG | - | chr4_2:28849073-28849092 | None:intergenic | 15.0% |
| !!! | TTTTTGTAATATTTTGTTGA+AGG | + | chr4_2:28849080-28849099 | Msa0597040:intron | 15.0% |
| !! | ATTTGAACAATTAATGGAAT+TGG | - | chr4_2:28845274-28845293 | None:intergenic | 20.0% |
| !! | TGAGATATATACTCATTATT+AGG | + | chr4_2:28845347-28845366 | Msa0597040:five_prime_UTR | 20.0% |
| !! | GAGATATATACTCATTATTA+GGG | + | chr4_2:28845348-28845367 | Msa0597040:five_prime_UTR | 20.0% |
| !!! | GAAAATGATAATCTTTGAAA+TGG | - | chr4_2:28845405-28845424 | None:intergenic | 20.0% |
| !!! | TCTAGTTTATTATTATCACT+AGG | + | chr4_2:28845423-28845442 | Msa0597040:CDS | 20.0% |
| !! | TTTATTATTATCACTAGGTT+TGG | + | chr4_2:28845428-28845447 | Msa0597040:CDS | 20.0% |
| !! | AAAGATTTAAACTAGAAGTA+AGG | - | chr4_2:28846243-28846262 | None:intergenic | 20.0% |
| !!! | TGATATTTTTTGCTTCTTTT+CGG | + | chr4_2:28846551-28846570 | Msa0597040:intron | 20.0% |
| !! | CAATACCAAATATTATTATG+AGG | + | chr4_2:28846580-28846599 | Msa0597040:CDS | 20.0% |
| !!! | ATTTTAAGATATCCTTCAAT+TGG | + | chr4_2:28846964-28846983 | Msa0597040:intron | 20.0% |
| !!! | TTTTAAGATATCCTTCAATT+GGG | + | chr4_2:28846965-28846984 | Msa0597040:intron | 20.0% |
| !! | TATCAATTGAATTCAACAAA+TGG | + | chr4_2:28847456-28847475 | Msa0597040:CDS | 20.0% |
| !!! | CAAATTAAATCGATTTATGT+TGG | - | chr4_2:28847653-28847672 | None:intergenic | 20.0% |
| !!! | CAACATAAATCGATTTAATT+TGG | + | chr4_2:28847651-28847670 | Msa0597040:intron | 20.0% |
| !! | ATTTCTGTAAATGATTAACA+TGG | + | chr4_2:28847748-28847767 | Msa0597040:intron | 20.0% |
| !!! | ATCTAATAGTGGATTTTTAT+CGG | + | chr4_2:28848140-28848159 | Msa0597040:intron | 20.0% |
| !! | AAATTATTACAAGGATTTAC+AGG | - | chr4_2:28848203-28848222 | None:intergenic | 20.0% |
| !! | TTATTGTGTAAACTTGTAAA+GGG | + | chr4_2:28848331-28848350 | Msa0597040:intron | 20.0% |
| !!! | TAATAATCTTCATTTTTCTC+AGG | + | chr4_2:28848406-28848425 | Msa0597040:intron | 20.0% |
| !! | ATTGCATATAATATCGTAAA+TGG | + | chr4_2:28848786-28848805 | Msa0597040:CDS | 20.0% |
| !!! | AGTCATTAAGTTTTCATTTA+TGG | - | chr4_2:28848903-28848922 | None:intergenic | 20.0% |
| !!! | TATATTCTATCTAATTTGTG+CGG | - | chr4_2:28849399-28849418 | None:intergenic | 20.0% |
| !! | TCTTCTAACCTAAAAAAATA+GGG | - | chr4_2:28849638-28849657 | None:intergenic | 20.0% |
| !! | AAATCTATTGAAAAACCAAA+GGG | - | chr4_2:28850255-28850274 | None:intergenic | 20.0% |
| !! | AAAATCTATTGAAAAACCAA+AGG | - | chr4_2:28850256-28850275 | None:intergenic | 20.0% |
| !!! | TTTGGTTTTTCAATAGATTT+TGG | + | chr4_2:28850255-28850274 | Msa0597040:CDS | 20.0% |
| !!! | AACAAGTATTTTTGTTAGGA+AGG | + | chr4_2:28845485-28845504 | Msa0597040:CDS | 25.0% |
| !!! | TCCAATTTTGAATTGATTCA+TGG | + | chr4_2:28845597-28845616 | Msa0597040:intron | 25.0% |
| ! | TCCATGAATCAATTCAAAAT+TGG | - | chr4_2:28845601-28845620 | None:intergenic | 25.0% |
| !! | TCATGGAAGTTTTTAAATCA+CGG | + | chr4_2:28845614-28845633 | Msa0597040:intron | 25.0% |
| ! | ATTCTTGACATTGTAAAGAA+TGG | + | chr4_2:28845902-28845921 | Msa0597040:intron | 25.0% |
| ! | AGAGAATTAGAGTTAAAATG+TGG | + | chr4_2:28845978-28845997 | Msa0597040:intron | 25.0% |
| ! | ATAAAAAACAGTTTGCAACT+AGG | - | chr4_2:28846041-28846060 | None:intergenic | 25.0% |
| ! | GAATTATGATGATACATGTT+TGG | + | chr4_2:28846164-28846183 | Msa0597040:intron | 25.0% |
| ! | AAATATCAAAACTTTGCATC+TGG | - | chr4_2:28846539-28846558 | None:intergenic | 25.0% |
| ! | ACCAAATATTATTATGAGGT+TGG | + | chr4_2:28846584-28846603 | Msa0597040:CDS | 25.0% |
| ! | TCCAACCTCATAATAATATT+TGG | - | chr4_2:28846588-28846607 | None:intergenic | 25.0% |
| ! | AGAATGAAAAATTTCTCGAA+TGG | - | chr4_2:28847683-28847702 | None:intergenic | 25.0% |
| !! | CTTTTGATAGAATACCAAAA+GGG | - | chr4_2:28847864-28847883 | None:intergenic | 25.0% |
| !! | TCTTTTGATAGAATACCAAA+AGG | - | chr4_2:28847865-28847884 | None:intergenic | 25.0% |
| ! | TGCAAATAAAATTGATCCAT+TGG | - | chr4_2:28848005-28848024 | None:intergenic | 25.0% |
| !! | TGTTTTACAATAACAGTTTG+TGG | - | chr4_2:28848043-28848062 | None:intergenic | 25.0% |
| ! | TAAAAATTTAACATGCCTTC+AGG | + | chr4_2:28848253-28848272 | Msa0597040:intron | 25.0% |
| ! | CTTATTGTGTAAACTTGTAA+AGG | + | chr4_2:28848330-28848349 | Msa0597040:intron | 25.0% |
| !!! | ATTTTTGAGTTGTCGTTTTA+AGG | + | chr4_2:28848945-28848964 | Msa0597040:intron | 25.0% |
| ! | CTCTTCTAACCTAAAAAAAT+AGG | - | chr4_2:28849639-28849658 | None:intergenic | 25.0% |
| ! | AAGAAATAAAACTACAAGTC+TGG | - | chr4_2:28849685-28849704 | None:intergenic | 25.0% |
| !! | AATATGTAAGACAGAAGTAT+AGG | + | chr4_2:28849735-28849754 | Msa0597040:intron | 25.0% |
| ! | TAGAGACAAGACAATTAAAA+AGG | + | chr4_2:28850052-28850071 | Msa0597040:intron | 25.0% |
| !! | CAATTTTTGACATAAAGAAC+AGG | + | chr4_2:28850171-28850190 | Msa0597040:CDS | 25.0% |
| !!! | TTTCTAGTCTAGACTTTTTT+TGG | + | chr4_2:28850370-28850389 | Msa0597040:three_prime_UTR | 25.0% |
| AGTGTGGAATATTCAGATAA+GGG | - | chr4_2:28845246-28845265 | None:intergenic | 30.0% | |
| TAGTGTGGAATATTCAGATA+AGG | - | chr4_2:28845247-28845266 | None:intergenic | 30.0% | |
| !!! | ACTAGGTTTGGTTTTGAATT+TGG | + | chr4_2:28845440-28845459 | Msa0597040:CDS | 30.0% |
| !! | AATTTGGTGTTTGTGTGTAA+TGG | + | chr4_2:28845456-28845475 | Msa0597040:CDS | 30.0% |
| !! | GCACAACAAGTATTTTTGTT+AGG | + | chr4_2:28845481-28845500 | Msa0597040:CDS | 30.0% |
| TTAAAAACATCGCTATCAAG+TGG | - | chr4_2:28845531-28845550 | None:intergenic | 30.0% | |
| !!! | ACTTGATAGCGATGTTTTTA+AGG | + | chr4_2:28845530-28845549 | Msa0597040:CDS | 30.0% |
| AAATAGAAAAATACCTGCTG+AGG | - | chr4_2:28845576-28845595 | None:intergenic | 30.0% | |
| GAAATTTGCAGTTAAAATGC+AGG | + | chr4_2:28845660-28845679 | Msa0597040:intron | 30.0% | |
| TTAAAATGCAGGATTAATCG+TGG | + | chr4_2:28845671-28845690 | Msa0597040:intron | 30.0% | |
| ATTCCAAAACAATGCATGTA+GGG | - | chr4_2:28846204-28846223 | None:intergenic | 30.0% | |
| TATATGGTTGATCCTAATGA+AGG | + | chr4_2:28846266-28846285 | Msa0597040:intron | 30.0% | |
| GTGTTATATGAACCTTCATT+AGG | - | chr4_2:28846281-28846300 | None:intergenic | 30.0% | |
| ATGAAGGTTCATATAACACA+AGG | + | chr4_2:28846282-28846301 | Msa0597040:intron | 30.0% | |
| AGATACTTCAATTACTCATC+TGG | + | chr4_2:28846432-28846451 | Msa0597040:CDS | 30.0% | |
| TTATTCATCATGCCACTATA+AGG | + | chr4_2:28846457-28846476 | Msa0597040:CDS | 30.0% | |
| TACCTTCAAATTCCTTATAG+TGG | - | chr4_2:28846472-28846491 | None:intergenic | 30.0% | |
| AGAAACAACATACATGACAA+GGG | - | chr4_2:28846513-28846532 | None:intergenic | 30.0% | |
| AGGTAAACTGTATTCTTTCA+TGG | + | chr4_2:28846688-28846707 | Msa0597040:intron | 30.0% | |
| ACCACAATGATATCTCATAA+AGG | - | chr4_2:28846722-28846741 | None:intergenic | 30.0% | |
| TTCAGTGCAATTATATGTGT+CGG | + | chr4_2:28846856-28846875 | Msa0597040:intron | 30.0% | |
| CTTTCAGTTCTCTTACAAAT+TGG | + | chr4_2:28846937-28846956 | Msa0597040:intron | 30.0% | |
| ACTATTCAGTCTTTACAACA+TGG | + | chr4_2:28847310-28847329 | Msa0597040:intron | 30.0% | |
| ACCTAACATTGTCATGATTT+GGG | - | chr4_2:28847527-28847546 | None:intergenic | 30.0% | |
| AAATCATGACAATGTTAGGT+GGG | + | chr4_2:28847527-28847546 | Msa0597040:CDS | 30.0% | |
| TGTTGGAAACTTACAATTTC+TGG | - | chr4_2:28847636-28847655 | None:intergenic | 30.0% | |
| TCATTTACAGAAATTCGACT+TGG | - | chr4_2:28847742-28847761 | None:intergenic | 30.0% | |
| ! | CTTTATAAGGAGTATGGTAT+CGG | - | chr4_2:28847824-28847843 | None:intergenic | 30.0% |
| GTACTTTGTGATGCTTTATA+AGG | - | chr4_2:28847837-28847856 | None:intergenic | 30.0% | |
| AATACCATATGCTGAATATG+AGG | - | chr4_2:28847913-28847932 | None:intergenic | 30.0% | |
| TAGAAATTAGTACTGTGACA+TGG | - | chr4_2:28848103-28848122 | None:intergenic | 30.0% | |
| AGGGACGTAAAATTATTACA+AGG | - | chr4_2:28848212-28848231 | None:intergenic | 30.0% | |
| AATATACACCACAATACACA+TGG | + | chr4_2:28848431-28848450 | Msa0597040:CDS | 30.0% | |
| !!! | GTTTTTTTCCTGTTAACTCT+CGG | - | chr4_2:28848472-28848491 | None:intergenic | 30.0% |
| TTAACAGGAAAAAAACTCCT+TGG | + | chr4_2:28848476-28848495 | Msa0597040:CDS | 30.0% | |
| ATCTCCGATGTTTATGTATA+CGG | - | chr4_2:28848844-28848863 | None:intergenic | 30.0% | |
| TTTCATTTATGGAGCTTACT+CGG | - | chr4_2:28848892-28848911 | None:intergenic | 30.0% | |
| ATTACAAAAAGAGAAATCGG+TGG | - | chr4_2:28849070-28849089 | None:intergenic | 30.0% | |
| AGTACTTATGATGTTCTCTT+TGG | - | chr4_2:28849443-28849462 | None:intergenic | 30.0% | |
| ACATAGTAGAATTCAATCAG+TGG | + | chr4_2:28849566-28849585 | Msa0597040:intron | 30.0% | |
| TAGAATTCAATCAGTGGTAA+TGG | + | chr4_2:28849572-28849591 | Msa0597040:intron | 30.0% | |
| AGAGAATAGATATTGCTATG+TGG | + | chr4_2:28849602-28849621 | Msa0597040:intron | 30.0% | |
| !!! | ACGAGAAACCCTATTTTTTT+AGG | + | chr4_2:28849627-28849646 | Msa0597040:intron | 30.0% |
| AAAAAATGACTGATACGTGT+CGG | - | chr4_2:28849806-28849825 | None:intergenic | 30.0% | |
| ! | ATACGATACTTCACCATTTT+TGG | + | chr4_2:28849997-28850016 | Msa0597040:intron | 30.0% |
| ATGAACATGATTTGAATTGC+AGG | + | chr4_2:28850093-28850112 | Msa0597040:intron | 30.0% | |
| !!! | TTTCAATAGATTTTGGAACC+CGG | + | chr4_2:28850262-28850281 | Msa0597040:CDS | 30.0% |
| CACATTGAGTATTCTTCAAT+GGG | - | chr4_2:28850312-28850331 | None:intergenic | 30.0% | |
| TCACATTGAGTATTCTTCAA+TGG | - | chr4_2:28850313-28850332 | None:intergenic | 30.0% | |
| GTGTGGAATATTCAGATAAG+GGG | - | chr4_2:28845245-28845264 | None:intergenic | 35.0% | |
| AATGGAATTGGCATATAGTG+TGG | - | chr4_2:28845262-28845281 | None:intergenic | 35.0% | |
| ! | TGGTTGCTTTGATGTTGTAT+AGG | + | chr4_2:28845691-28845710 | Msa0597040:intron | 35.0% |
| ACACAATATCAATGCAACCA+CGG | - | chr4_2:28845819-28845838 | None:intergenic | 35.0% | |
| GATTCCAAAACAATGCATGT+AGG | - | chr4_2:28846205-28846224 | None:intergenic | 35.0% | |
| TATAACACAAGGTGATCATG+TGG | + | chr4_2:28846293-28846312 | Msa0597040:CDS | 35.0% | |
| ATAACACAAGGTGATCATGT+GGG | + | chr4_2:28846294-28846313 | Msa0597040:CDS | 35.0% | |
| TGCCACTATAAGGAATTTGA+AGG | + | chr4_2:28846467-28846486 | Msa0597040:CDS | 35.0% | |
| GAGAAACAACATACATGACA+AGG | - | chr4_2:28846514-28846533 | None:intergenic | 35.0% | |
| TTGGACTTAAGAACACAACA+AGG | + | chr4_2:28846603-28846622 | Msa0597040:CDS | 35.0% | |
| GCCTTTATGAGATATCATTG+TGG | + | chr4_2:28846718-28846737 | Msa0597040:intron | 35.0% | |
| TTGTAAGAGAACTGAAAGCA+CGG | - | chr4_2:28846935-28846954 | None:intergenic | 35.0% | |
| TAAGATATCCTTCAATTGGG+TGG | + | chr4_2:28846968-28846987 | Msa0597040:intron | 35.0% | |
| TCTCATATGCCAAGATACAT+AGG | - | chr4_2:28847003-28847022 | None:intergenic | 35.0% | |
| AGAAAGATATGTCGTGCAAA+AGG | - | chr4_2:28847064-28847083 | None:intergenic | 35.0% | |
| GAAAAGGATGCTACATTAGT+TGG | - | chr4_2:28847390-28847409 | None:intergenic | 35.0% | |
| ! | ACTAATGTAGCATCCTTTTC+AGG | + | chr4_2:28847390-28847409 | Msa0597040:intron | 35.0% |
| !! | GTCAGACTTTTGATTCAAAC+AGG | + | chr4_2:28847421-28847440 | Msa0597040:CDS | 35.0% |
| ACCCAAATCATGACAATGTT+AGG | + | chr4_2:28847523-28847542 | Msa0597040:CDS | 35.0% | |
| CACCTAACATTGTCATGATT+TGG | - | chr4_2:28847528-28847547 | None:intergenic | 35.0% | |
| CAAATCATGACAATGTTAGG+TGG | + | chr4_2:28847526-28847545 | Msa0597040:CDS | 35.0% | |
| TTGCTTATCAACCTTGGATA+TGG | + | chr4_2:28847580-28847599 | Msa0597040:CDS | 35.0% | |
| ATGGATCGATGATTATTTGC+AGG | + | chr4_2:28847767-28847786 | Msa0597040:intron | 35.0% | |
| TGGATCGATGATTATTTGCA+GGG | + | chr4_2:28847768-28847787 | Msa0597040:intron | 35.0% | |
| GTGATGCTTTATAAGGAGTA+TGG | - | chr4_2:28847830-28847849 | None:intergenic | 35.0% | |
| ACCATACATACATGCATATG+TGG | + | chr4_2:28847951-28847970 | Msa0597040:intron | 35.0% | |
| TCCACATATGCATGTATGTA+TGG | - | chr4_2:28847955-28847974 | None:intergenic | 35.0% | |
| ! | GCTGATTCTATGATTTCCAA+TGG | + | chr4_2:28847986-28848005 | Msa0597040:intron | 35.0% |
| CACTATTAGATGTTAGTGCA+AGG | - | chr4_2:28848131-28848150 | None:intergenic | 35.0% | |
| CTTGCACTAACATCTAATAG+TGG | + | chr4_2:28848129-28848148 | Msa0597040:intron | 35.0% | |
| AATTTGACCTTGTAACCTGA+AGG | - | chr4_2:28848271-28848290 | None:intergenic | 35.0% | |
| ! | TAGCTGTTGCTATTATACCA+AGG | - | chr4_2:28848523-28848542 | None:intergenic | 35.0% |
| TAGCAACAGCTATCATTACA+TGG | + | chr4_2:28848531-28848550 | Msa0597040:CDS | 35.0% | |
| AACAGCTATCATTACATGGA+AGG | + | chr4_2:28848535-28848554 | Msa0597040:CDS | 35.0% | |
| ACAGCTATCATTACATGGAA+GGG | + | chr4_2:28848536-28848555 | Msa0597040:CDS | 35.0% | |
| TGAGAGTAATGTTTGAGTCA+TGG | + | chr4_2:28848566-28848585 | Msa0597040:CDS | 35.0% | |
| !! | AAAGTTGATGTTGTGTTTGC+TGG | + | chr4_2:28848601-28848620 | Msa0597040:CDS | 35.0% |
| AGTACTTACAGATCTTTCGT+AGG | - | chr4_2:28848638-28848657 | None:intergenic | 35.0% | |
| TCACATGAATCAGTACTCTT+TGG | - | chr4_2:28848728-28848747 | None:intergenic | 35.0% | |
| AAGCGATATATGTTTGTGTC+AGG | + | chr4_2:28848749-28848768 | Msa0597040:intron | 35.0% | |
| TCTCCGATGTTTATGTATAC+GGG | - | chr4_2:28848843-28848862 | None:intergenic | 35.0% | |
| GTATACATAAACATCGGAGA+TGG | + | chr4_2:28848843-28848862 | Msa0597040:CDS | 35.0% | |
| TCAAAATTCCCGATACGATA+CGG | + | chr4_2:28849235-28849254 | Msa0597040:intron | 35.0% | |
| CTTATGATGTTCTCTTTGGA+TGG | - | chr4_2:28849439-28849458 | None:intergenic | 35.0% | |
| AAACAATAACCGATACGTGT+CGG | - | chr4_2:28849889-28849908 | None:intergenic | 35.0% | |
| !!! | CTTCACCATTTTTGGAGTAT+CGG | + | chr4_2:28850005-28850024 | Msa0597040:intron | 35.0% |
| !!! | TTCACCATTTTTGGAGTATC+GGG | + | chr4_2:28850006-28850025 | Msa0597040:intron | 35.0% |
| AAAAATTGCATGTCCAAAGC+TGG | - | chr4_2:28850159-28850178 | None:intergenic | 35.0% | |
| !!! | TCACACGTTTTTTGTTCCAA+CGG | - | chr4_2:28850447-28850466 | None:intergenic | 35.0% |
| ! | TTGGTGTTTGTGTGTAATGG+AGG | + | chr4_2:28845459-28845478 | Msa0597040:CDS | 40.0% |
| !!! | GATGTTTTTAAGGTTCCTCC+TGG | + | chr4_2:28845540-28845559 | Msa0597040:CDS | 40.0% |
| TTGCGAATAAAATGCACTCG+TGG | + | chr4_2:28845735-28845754 | Msa0597040:intron | 40.0% | |
| CACAATATCAATGCAACCAC+GGG | - | chr4_2:28845818-28845837 | None:intergenic | 40.0% | |
| GATGATACATGTTTGGTCTC+TGG | + | chr4_2:28846171-28846190 | Msa0597040:intron | 40.0% | |
| ! | CATCCCTACATGCATTGTTT+TGG | + | chr4_2:28846198-28846217 | Msa0597040:intron | 40.0% |
| TAACACAAGGTGATCATGTG+GGG | + | chr4_2:28846295-28846314 | Msa0597040:CDS | 40.0% | |
| AAGCACAAGAAGCTAGCTAA+AGG | + | chr4_2:28846393-28846412 | Msa0597040:CDS | 40.0% | |
| AGCACAAGAAGCTAGCTAAA+GGG | + | chr4_2:28846394-28846413 | Msa0597040:CDS | 40.0% | |
| CATACATGACAAGGGAGTAA+TGG | - | chr4_2:28846505-28846524 | None:intergenic | 40.0% | |
| ! | AGAACACAACAAGGCAGTTT+TGG | + | chr4_2:28846612-28846631 | Msa0597040:CDS | 40.0% |
| TTTACAACTCCTCCTGCAAT+TGG | + | chr4_2:28846635-28846654 | Msa0597040:CDS | 40.0% | |
| CCTATGAGACCAAATGTGTA+TGG | - | chr4_2:28846671-28846690 | None:intergenic | 40.0% | |
| CCATACACATTTGGTCTCAT+AGG | + | chr4_2:28846668-28846687 | Msa0597040:CDS | 40.0% | |
| ATATCCTTCAATTGGGTGGA+TGG | + | chr4_2:28846972-28846991 | Msa0597040:intron | 40.0% | |
| ATGGAGTCTCCTATGTATCT+TGG | + | chr4_2:28846991-28847010 | Msa0597040:intron | 40.0% | |
| ATCTGACGACTTTGACTGAT+TGG | + | chr4_2:28847207-28847226 | Msa0597040:intron | 40.0% | |
| AAGGATGCTACATTAGTTGG+TGG | - | chr4_2:28847387-28847406 | None:intergenic | 40.0% | |
| !! | GGACAAACAGTGTTGTTTGT+TGG | + | chr4_2:28847477-28847496 | Msa0597040:CDS | 40.0% |
| ACAATGTTAGGTGGGATACT+TGG | + | chr4_2:28847535-28847554 | Msa0597040:CDS | 40.0% | |
| CAATGTTAGGTGGGATACTT+GGG | + | chr4_2:28847536-28847555 | Msa0597040:CDS | 40.0% | |
| AATGTTAGGTGGGATACTTG+GGG | + | chr4_2:28847537-28847556 | Msa0597040:CDS | 40.0% | |
| TTTCCAACAGTCCATATCCA+AGG | - | chr4_2:28847594-28847613 | None:intergenic | 40.0% | |
| !! | CACAAAGTACTTCACCCTTT+TGG | + | chr4_2:28847847-28847866 | Msa0597040:CDS | 40.0% |
| TTCAGCACACATCATTGTCT+TGG | + | chr4_2:28847887-28847906 | Msa0597040:CDS | 40.0% | |
| TTGGCCTCATATTCAGCATA+TGG | + | chr4_2:28847906-28847925 | Msa0597040:CDS | 40.0% | |
| AGTACTGTGACATGGAAACA+TGG | - | chr4_2:28848095-28848114 | None:intergenic | 40.0% | |
| ! | TAACATGCCTTCAGGTTACA+AGG | + | chr4_2:28848261-28848280 | Msa0597040:intron | 40.0% |
| TCTTCAAGCCATGTGTATTG+TGG | - | chr4_2:28848442-28848461 | None:intergenic | 40.0% | |
| TGCATGAGAACAATCAACCA+AGG | - | chr4_2:28848496-28848515 | None:intergenic | 40.0% | |
| TTGTTCTCATGCATTCACCT+TGG | + | chr4_2:28848503-28848522 | Msa0597040:CDS | 40.0% | |
| CAGCTATCATTACATGGAAG+GGG | + | chr4_2:28848537-28848556 | Msa0597040:CDS | 40.0% | |
| ATCTTTCGTAGGCATGTACA+TGG | - | chr4_2:28848627-28848646 | None:intergenic | 40.0% | |
| ! | GGAGCTGATAGATCTTTTAC+GGG | - | chr4_2:28848822-28848841 | None:intergenic | 40.0% |
| ! | GGGAGCTGATAGATCTTTTA+CGG | - | chr4_2:28848823-28848842 | None:intergenic | 40.0% |
| GCTCCCGTATACATAAACAT+CGG | + | chr4_2:28848837-28848856 | Msa0597040:CDS | 40.0% | |
| TACATAAACATCGGAGATGG+AGG | + | chr4_2:28848846-28848865 | Msa0597040:CDS | 40.0% | |
| ACATAAACATCGGAGATGGA+GGG | + | chr4_2:28848847-28848866 | Msa0597040:CDS | 40.0% | |
| ! | GTATCGGTATCGTATCGTAT+CGG | - | chr4_2:28849197-28849216 | None:intergenic | 40.0% |
| GATACGATACGATACCGATA+CGG | + | chr4_2:28849196-28849215 | Msa0597040:intron | 40.0% | |
| ! | TACGCGTATCGGAAAAGTAT+CGG | - | chr4_2:28849936-28849955 | None:intergenic | 40.0% |
| ! | TACTTTTCCGATACGCGTAT+CGG | + | chr4_2:28849937-28849956 | Msa0597040:intron | 40.0% |
| !!! | TCACCATTTTTGGAGTATCG+GGG | + | chr4_2:28850007-28850026 | Msa0597040:intron | 40.0% |
| TCTCTAAATGCTGAGTACTC+TGG | - | chr4_2:28850134-28850153 | None:intergenic | 40.0% | |
| AGCTGGCATAGAAATCAAGA+TGG | + | chr4_2:28850209-28850228 | Msa0597040:CDS | 40.0% | |
| CTGTTAAGAGTGATTCCCTT+TGG | + | chr4_2:28850237-28850256 | Msa0597040:CDS | 40.0% | |
| ! | TGAGGTTTGGAATCATCAAC+CGG | - | chr4_2:28850284-28850303 | None:intergenic | 40.0% |
| !! | GTTGATGATTCCAAACCTCA+TGG | + | chr4_2:28850284-28850303 | Msa0597040:CDS | 40.0% |
| ATTCTTCAATGGGAACCATG+AGG | - | chr4_2:28850302-28850321 | None:intergenic | 40.0% | |
| CACTTATGTTTCTTGACCGT+TGG | + | chr4_2:28850428-28850447 | Msa0597040:three_prime_UTR | 40.0% | |
| !! | TGAGGAGCATTATAACCAGG+AGG | - | chr4_2:28845558-28845577 | None:intergenic | 45.0% |
| !! | TGCTGAGGAGCATTATAACC+AGG | - | chr4_2:28845561-28845580 | None:intergenic | 45.0% |
| TGGTTATAATGCTCCTCAGC+AGG | + | chr4_2:28845560-28845579 | Msa0597040:CDS | 45.0% | |
| TTGCGATGAAAATACACCCG+TGG | + | chr4_2:28845799-28845818 | Msa0597040:intron | 45.0% | |
| GTGGTCTCAACTCTGAATCA+TGG | + | chr4_2:28845997-28846016 | Msa0597040:intron | 45.0% | |
| GAAAGCAGTGATCGTATCGT+GGG | + | chr4_2:28846317-28846336 | Msa0597040:CDS | 45.0% | |
| CCAAATGTGTATGGCACATC+AGG | - | chr4_2:28846662-28846681 | None:intergenic | 45.0% | |
| CCTGATGTGCCATACACATT+TGG | + | chr4_2:28846659-28846678 | Msa0597040:CDS | 45.0% | |
| GTTCCAGTGAAGCACAGATA+CGG | + | chr4_2:28846764-28846783 | Msa0597040:intron | 45.0% | |
| TTTCCGTATCTGTGCTTCAC+TGG | - | chr4_2:28846770-28846789 | None:intergenic | 45.0% | |
| GTGAAGCACAGATACGGAAA+AGG | + | chr4_2:28846770-28846789 | Msa0597040:intron | 45.0% | |
| !! | ACGACACAAACACTGACTTG+CGG | + | chr4_2:28846802-28846821 | Msa0597040:intron | 45.0% |
| !! | TATATGTGTCGGTGTCGTGT+TGG | + | chr4_2:28846867-28846886 | Msa0597040:intron | 45.0% |
| ! | TCTTCGGATTAGACGTGTCT+CGG | - | chr4_2:28846908-28846927 | None:intergenic | 45.0% |
| !!! | GCATCCTTTTCAGGTGATCT+TGG | + | chr4_2:28847399-28847418 | Msa0597040:intron | 45.0% |
| CTGACCAAGATCACCTGAAA+AGG | - | chr4_2:28847406-28847425 | None:intergenic | 45.0% | |
| !! | GGAGTGTTGCTTATCAACCT+TGG | + | chr4_2:28847574-28847593 | Msa0597040:CDS | 45.0% |
| ! | CAACCTTGGATATGGACTGT+TGG | + | chr4_2:28847588-28847607 | Msa0597040:CDS | 45.0% |
| CTGGAGCGAAATCAAGTTCA+TGG | - | chr4_2:28847617-28847636 | None:intergenic | 45.0% | |
| !! | GTATGGTATCGGTGCGAAAA+AGG | - | chr4_2:28847813-28847832 | None:intergenic | 45.0% |
| AGAGAGATCATTTGTCCACG+TGG | - | chr4_2:28848312-28848331 | None:intergenic | 45.0% | |
| AAGAGCTACCGAGAGTTAAC+AGG | + | chr4_2:28848461-28848480 | Msa0597040:CDS | 45.0% | |
| ATCGGTATCGTGTCAGGTAT+CGG | - | chr4_2:28849179-28849198 | None:intergenic | 45.0% | |
| ! | TATCGTATCGGTATCGTGTC+AGG | - | chr4_2:28849185-28849204 | None:intergenic | 45.0% |
| TATCGAAGCCGTATCGTATC+GGG | - | chr4_2:28849246-28849265 | None:intergenic | 45.0% | |
| GTATCGAAGCCGTATCGTAT+CGG | - | chr4_2:28849247-28849266 | None:intergenic | 45.0% | |
| ! | TACGCGTATCGGAGAAGTAT+CGG | - | chr4_2:28849855-28849874 | None:intergenic | 45.0% |
| TACTTCTCCGATACGCGTAT+CGG | + | chr4_2:28849856-28849875 | Msa0597040:intron | 45.0% | |
| ATACTTCCCGATACGCGTAT+CGG | - | chr4_2:28849866-28849885 | None:intergenic | 45.0% | |
| !! | ACGCGTATCGGAAAAGTATC+GGG | - | chr4_2:28849935-28849954 | None:intergenic | 45.0% |
| ! | ACTTTTCCGATACGCGTATC+GGG | + | chr4_2:28849938-28849957 | Msa0597040:intron | 45.0% |
| ! | TATCGGTATCGGATACGTGT+CGG | + | chr4_2:28849974-28849993 | Msa0597040:intron | 45.0% |
| AAGCCCCGATACTCCAAAAA+TGG | - | chr4_2:28850013-28850032 | None:intergenic | 45.0% | |
| GCATTTAGAGAAGCCAGCTT+TGG | + | chr4_2:28850143-28850162 | Msa0597040:CDS | 45.0% | |
| GGACACATGCTTACTATAGC+TGG | + | chr4_2:28850192-28850211 | Msa0597040:CDS | 45.0% | |
| ! | GAGGTTTGGAATCATCAACC+GGG | - | chr4_2:28850283-28850302 | None:intergenic | 45.0% |
| TCAATGGGAACCATGAGGTT+TGG | - | chr4_2:28850297-28850316 | None:intergenic | 45.0% | |
| !! | TTATTGAATATTTATATTAT+TGG | - | chr4_2:28847030-28847049 | None:intergenic | 5.0% |
| !!! | TTATTTTTTCTTTTTTTTAA+AGG | + | chr4_2:28849711-28849730 | Msa0597040:intron | 5.0% |
| CAACTAGGACTGCGACATCA+GGG | - | chr4_2:28846026-28846045 | None:intergenic | 50.0% | |
| GGAAAGCAGTGATCGTATCG+TGG | + | chr4_2:28846316-28846335 | Msa0597040:CDS | 50.0% | |
| ACATCAGGACCAATTGCAGG+AGG | - | chr4_2:28846647-28846666 | None:intergenic | 50.0% | |
| GTCAGTGTTTGTGTCGTGTC+TGG | - | chr4_2:28846799-28846818 | None:intergenic | 50.0% | |
| ! | CTGAAAGCACGGACACTCTT+CGG | - | chr4_2:28846924-28846943 | None:intergenic | 50.0% |
| GACTCCATCCACCCAATTGA+AGG | - | chr4_2:28846979-28846998 | None:intergenic | 50.0% | |
| TTAGGTGGGATACTTGGGGA+AGG | + | chr4_2:28847541-28847560 | Msa0597040:CDS | 50.0% | |
| CGGTGCGAAAAAGGCTTGAA+TGG | - | chr4_2:28847804-28847823 | None:intergenic | 50.0% | |
| ACCTCTATGCTAACACCACG+TGG | + | chr4_2:28848294-28848313 | Msa0597040:intron | 50.0% | |
| ! | TCCACGTGGTGTTAGCATAG+AGG | - | chr4_2:28848298-28848317 | None:intergenic | 50.0% |
| GGAGATGGAGGGAATATCGA+AGG | + | chr4_2:28848858-28848877 | Msa0597040:CDS | 50.0% | |
| TCGGTATCGTGTCAGGTATC+GGG | - | chr4_2:28849178-28849197 | None:intergenic | 50.0% | |
| ACGATACCGATACGGCGATA+CGG | + | chr4_2:28849204-28849223 | Msa0597040:intron | 50.0% | |
| ! | GTTTTCCCGTATCGCCGTAT+CGG | - | chr4_2:28849213-28849232 | None:intergenic | 50.0% |
| !! | ACGCGTATCGGAGAAGTATC+GGG | - | chr4_2:28849854-28849873 | None:intergenic | 50.0% |
| ACTTCTCCGATACGCGTATC+GGG | + | chr4_2:28849857-28849876 | Msa0597040:intron | 50.0% | |
| !! | GGGAAGTATCCGACACGTAT+CGG | + | chr4_2:28849877-28849896 | Msa0597040:intron | 50.0% |
| ATACGTCCCGATACGCGTAT+CGG | - | chr4_2:28849947-28849966 | None:intergenic | 50.0% | |
| ATACGCGTATCGGGACGTAT+CGG | + | chr4_2:28849947-28849966 | Msa0597040:intron | 50.0% | |
| AATGCTGAGTACTCTGGCTG+TGG | - | chr4_2:28850128-28850147 | None:intergenic | 50.0% | |
| GCAACTAGGACTGCGACATC+AGG | - | chr4_2:28846027-28846046 | None:intergenic | 55.0% | |
| GATCGTATCGTGGGTGACTG+AGG | + | chr4_2:28846326-28846345 | Msa0597040:CDS | 55.0% | |
| TGGGTGACTGAGGATGAACC+AGG | + | chr4_2:28846336-28846355 | Msa0597040:CDS | 55.0% | |
| GGGTGACTGAGGATGAACCA+GGG | + | chr4_2:28846337-28846356 | Msa0597040:CDS | 55.0% | |
| GACTGAGGATGAACCAGGGT+CGG | + | chr4_2:28846341-28846360 | Msa0597040:CDS | 55.0% | |
| GGCACATCAGGACCAATTGC+AGG | - | chr4_2:28846650-28846669 | None:intergenic | 55.0% | |
| !! | TGTCGGTGTCGTGTTGGTGT+CGG | + | chr4_2:28846873-28846892 | Msa0597040:intron | 55.0% |
| CTTGGGGAAGGTTTGCAGAG+AGG | + | chr4_2:28847553-28847572 | Msa0597040:CDS | 55.0% | |
| !! | GTCAGGTATCGGGGCTTCAT+AGG | - | chr4_2:28849168-28849187 | None:intergenic | 55.0% |
| ! | CGGTATCGTGTCAGGTATCG+GGG | - | chr4_2:28849177-28849196 | None:intergenic | 55.0% |
| CGATACCGATACGGCGATAC+GGG | + | chr4_2:28849205-28849224 | Msa0597040:intron | 55.0% | |
| TACGCGTATCGGGACGTATC+GGG | + | chr4_2:28849948-28849967 | Msa0597040:intron | 55.0% | |
| ! | GTATCGGGGCGTATCGGTAT+CGG | + | chr4_2:28849963-28849982 | Msa0597040:intron | 55.0% |
| CTAGGACTGCGACATCAGGG+CGG | - | chr4_2:28846023-28846042 | None:intergenic | 60.0% | |
| TAACGCACTGCATCCGACCC+TGG | - | chr4_2:28846357-28846376 | None:intergenic | 60.0% | |
| GGTCGGATGCAGTGCGTTAC+TGG | + | chr4_2:28846358-28846377 | Msa0597040:CDS | 60.0% | |
| ACGCGTATCGGGACGTATCG+GGG | + | chr4_2:28849949-28849968 | Msa0597040:intron | 60.0% | |
| CGGGACGTATCGGGGCGTAT+CGG | + | chr4_2:28849957-28849976 | Msa0597040:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 28845237 | 28850471 | 28845237 | ID=Msa0597040;Name=Msa0597040 |
| chr4_2 | mRNA | 28845237 | 28850471 | 28845237 | ID=Msa0597040-mRNA-1;Parent=Msa0597040;Name=Msa0597040-mRNA-1;_AED=0.13;_eAED=0.13;_QI=120|1|1|1|0.87|0.77|9|155|470 |
| chr4_2 | exon | 28845237 | 28845279 | 28845237 | ID=Msa0597040-mRNA-1:exon:7362;Parent=Msa0597040-mRNA-1 |
| chr4_2 | exon | 28845319 | 28845581 | 28845319 | ID=Msa0597040-mRNA-1:exon:7363;Parent=Msa0597040-mRNA-1 |
| chr4_2 | exon | 28846288 | 28846488 | 28846288 | ID=Msa0597040-mRNA-1:exon:7364;Parent=Msa0597040-mRNA-1 |
| chr4_2 | exon | 28846578 | 28846689 | 28846578 | ID=Msa0597040-mRNA-1:exon:7365;Parent=Msa0597040-mRNA-1 |
| chr4_2 | exon | 28847412 | 28847641 | 28847412 | ID=Msa0597040-mRNA-1:exon:7366;Parent=Msa0597040-mRNA-1 |
| chr4_2 | exon | 28847789 | 28847927 | 28847789 | ID=Msa0597040-mRNA-1:exon:7367;Parent=Msa0597040-mRNA-1 |
| chr4_2 | exon | 28848428 | 28848648 | 28848428 | ID=Msa0597040-mRNA-1:exon:7368;Parent=Msa0597040-mRNA-1 |
| chr4_2 | exon | 28848771 | 28848892 | 28848771 | ID=Msa0597040-mRNA-1:exon:7369;Parent=Msa0597040-mRNA-1 |
| chr4_2 | exon | 28850115 | 28850471 | 28850115 | ID=Msa0597040-mRNA-1:exon:7370;Parent=Msa0597040-mRNA-1 |
| chr4_2 | five_prime_UTR | 28845237 | 28845279 | 28845237 | ID=Msa0597040-mRNA-1:five_prime_utr;Parent=Msa0597040-mRNA-1 |
| chr4_2 | five_prime_UTR | 28845319 | 28845395 | 28845319 | ID=Msa0597040-mRNA-1:five_prime_utr;Parent=Msa0597040-mRNA-1 |
| chr4_2 | CDS | 28845396 | 28845581 | 28845396 | ID=Msa0597040-mRNA-1:cds;Parent=Msa0597040-mRNA-1 |
| chr4_2 | CDS | 28846288 | 28846488 | 28846288 | ID=Msa0597040-mRNA-1:cds;Parent=Msa0597040-mRNA-1 |
| chr4_2 | CDS | 28846578 | 28846689 | 28846578 | ID=Msa0597040-mRNA-1:cds;Parent=Msa0597040-mRNA-1 |
| chr4_2 | CDS | 28847412 | 28847641 | 28847412 | ID=Msa0597040-mRNA-1:cds;Parent=Msa0597040-mRNA-1 |
| chr4_2 | CDS | 28847789 | 28847927 | 28847789 | ID=Msa0597040-mRNA-1:cds;Parent=Msa0597040-mRNA-1 |
| chr4_2 | CDS | 28848428 | 28848648 | 28848428 | ID=Msa0597040-mRNA-1:cds;Parent=Msa0597040-mRNA-1 |
| chr4_2 | CDS | 28848771 | 28848892 | 28848771 | ID=Msa0597040-mRNA-1:cds;Parent=Msa0597040-mRNA-1 |
| chr4_2 | CDS | 28850115 | 28850316 | 28850115 | ID=Msa0597040-mRNA-1:cds;Parent=Msa0597040-mRNA-1 |
| chr4_2 | three_prime_UTR | 28850317 | 28850471 | 28850317 | ID=Msa0597040-mRNA-1:three_prime_utr;Parent=Msa0597040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
