AlfalfaGEDB | Msa0597040

M. sativa cultivar zhongmu-4 / Msa0597040

KEGG: K22390
GO: GO:0003674 GO:0003824 GO:0003993 GO:0005488 GO:0005506 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008199 GO:0008270 GO:0009267 GO:0009505 GO:0009506 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030054 GO:0030145 GO:0030312 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0043167 GO:0043169 GO:0044237 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0055044 GO:0071496 GO:0071944
PFAM: PF16656.8

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0597040	XP_013442399.1	97.028	471	13	1	1	470	1	471	0.0	950

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0597040	sp\|Q09131\|PPAF_SOYBN	82.812	448	77	0	23	470	17	464	0.0	793

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0597040	A0A072TFW4	97.028	471	13	1	1	470	1	471	0.0	950

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0220740	Msa0597040	0.806464	8.121595e-50	-8.615850e-47
Msa0434000	Msa0597040	0.816904	4.348489e-52	-8.615850e-47
Msa0540990	Msa0597040	0.909303	6.608275e-82	-8.615850e-47
Msa0597040	Msa0636350	0.843339	1.489026e-58	-8.615850e-47
Msa0597040	Msa0675690	0.947171	1.128277e-105	-8.615850e-47
Msa0597040	Msa0913060	0.813729	2.208477e-51	-8.615850e-47
Msa0597040	Msa0916690	0.861355	1.087554e-63	-8.615850e-47
Msa0597040	Msa0925870	0.801728	7.853047e-49	-8.615850e-47
Msa0597040	Msa0967280	0.801894	7.258896e-49	-8.615850e-47
Msa0597040	Msa0998680	0.819994	8.668361e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0597040	MtrunA17_Chr4g0019091	86.830	448	59	0	23	470	18	465	0.0	830
Msa0597040	MtrunA17_Chr1g0211041	83.011	465	78	1	7	470	3	467	0.0	800
Msa0597040	MtrunA17_Chr4g0019071	98.026	304	6	0	167	470	39	342	0.0	630
Msa0597040	MtrunA17_Chr4g0064541	61.574	432	163	2	28	458	23	452	0.0	555
Msa0597040	MtrunA17_Chr3g0098721	41.986	443	221	14	14	453	1	410	8.59e-102	311
Msa0597040	MtrunA17_Chr5g0443881	40.455	440	229	11	30	467	22	430	1.89e-100	308
Msa0597040	MtrunA17_Chr4g0019081	88.235	170	19	1	1	169	1	170	1.01e-98	293
Msa0597040	MtrunA17_Chr7g0266151	40.674	445	225	13	22	461	14	424	1.68e-96	297
Msa0597040	MtrunA17_Chr1g0178831	41.772	395	203	8	60	453	46	414	4.77e-96	296
Msa0597040	MtrunA17_Chr7g0266131	41.266	395	205	8	60	453	54	422	1.87e-94	292

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0597040	AT2G16430.2	75.431	464	113	1	1	464	1	463	0.0	745
Msa0597040	AT2G27190.1	69.451	455	134	1	4	458	9	458	0.0	674
Msa0597040	AT1G56360.1	63.124	461	161	4	9	463	1	458	0.0	608
Msa0597040	AT4G36350.1	61.842	456	166	4	13	463	6	458	0.0	596
Msa0597040	AT2G16430.1	80.712	337	65	0	128	464	7	343	0.0	587
Msa0597040	AT5G34850.1	58.720	453	181	3	7	458	4	451	0.0	558
Msa0597040	AT2G18130.1	55.195	462	181	5	6	464	2	440	0.0	522
Msa0597040	AT3G46120.1	47.930	459	152	9	7	458	3	381	2.32e-138	403
Msa0597040	AT1G52940.1	59.671	243	93	4	46	285	1	241	7.97e-103	307
Msa0597040	AT3G20500.1	40.541	444	227	12	12	453	6	414	2.68e-98	302

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Find 107 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTGATGTTGTGTTTGC+TGG	0.344435	4_2:+28848601	Msa0597040:CDS
AAATCATGACAATGTTAGGT+GGG	0.605681	4_2:+28847527	Msa0597040:CDS
AACAGCTATCATTACATGGA+AGG	0.564929	4_2:+28848535	Msa0597040:CDS
AAGAGCTACCGAGAGTTAAC+AGG	0.373690	4_2:+28848461	Msa0597040:CDS
AAGCACAAGAAGCTAGCTAA+AGG	0.523147	4_2:+28846393	Msa0597040:CDS
AATACCATATGCTGAATATG+AGG	0.494395	4_2:-28847910	None:intergenic
AATATACACCACAATACACA+TGG	0.674739	4_2:+28848431	Msa0597040:CDS
AATGCTGAGTACTCTGGCTG+TGG	0.569296	4_2:-28850125	None:intergenic
AATGGAATTGGCATATAGTG+TGG	0.573258	4_2:-28845259	None:intergenic
AATGTTAGGTGGGATACTTG+GGG	0.732363	4_2:+28847537	Msa0597040:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTGTGGAATATTCAGATAA+GGG	-	chr4_2:28845246-28845265	None:intergenic	30.0%
TAGTGTGGAATATTCAGATA+AGG	-	chr4_2:28845247-28845266	None:intergenic	30.0%
TTAAAAACATCGCTATCAAG+TGG	-	chr4_2:28845531-28845550	None:intergenic	30.0%
AAATAGAAAAATACCTGCTG+AGG	-	chr4_2:28845576-28845595	None:intergenic	30.0%
GAAATTTGCAGTTAAAATGC+AGG	+	chr4_2:28845660-28845679	Msa0597040:intron	30.0%
TTAAAATGCAGGATTAATCG+TGG	+	chr4_2:28845671-28845690	Msa0597040:intron	30.0%
ATTCCAAAACAATGCATGTA+GGG	-	chr4_2:28846204-28846223	None:intergenic	30.0%
TATATGGTTGATCCTAATGA+AGG	+	chr4_2:28846266-28846285	Msa0597040:intron	30.0%
GTGTTATATGAACCTTCATT+AGG	-	chr4_2:28846281-28846300	None:intergenic	30.0%
ATGAAGGTTCATATAACACA+AGG	+	chr4_2:28846282-28846301	Msa0597040:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	28845237	28850471	28845237	ID=Msa0597040;Name=Msa0597040
chr4_2	mRNA	28845237	28850471	28845237	ID=Msa0597040-mRNA-1;Parent=Msa0597040;Name=Msa0597040-mRNA-1;_AED=0.13;_eAED=0.13;_QI=120\|1\|1\|1\|0.87\|0.77\|9\|155\|470
chr4_2	exon	28845237	28845279	28845237	ID=Msa0597040-mRNA-1:exon:7362;Parent=Msa0597040-mRNA-1
chr4_2	exon	28845319	28845581	28845319	ID=Msa0597040-mRNA-1:exon:7363;Parent=Msa0597040-mRNA-1
chr4_2	exon	28846288	28846488	28846288	ID=Msa0597040-mRNA-1:exon:7364;Parent=Msa0597040-mRNA-1
chr4_2	exon	28846578	28846689	28846578	ID=Msa0597040-mRNA-1:exon:7365;Parent=Msa0597040-mRNA-1
chr4_2	exon	28847412	28847641	28847412	ID=Msa0597040-mRNA-1:exon:7366;Parent=Msa0597040-mRNA-1
chr4_2	exon	28847789	28847927	28847789	ID=Msa0597040-mRNA-1:exon:7367;Parent=Msa0597040-mRNA-1
chr4_2	exon	28848428	28848648	28848428	ID=Msa0597040-mRNA-1:exon:7368;Parent=Msa0597040-mRNA-1
chr4_2	exon	28848771	28848892	28848771	ID=Msa0597040-mRNA-1:exon:7369;Parent=Msa0597040-mRNA-1
chr4_2	exon	28850115	28850471	28850115	ID=Msa0597040-mRNA-1:exon:7370;Parent=Msa0597040-mRNA-1
chr4_2	five_prime_UTR	28845237	28845279	28845237	ID=Msa0597040-mRNA-1:five_prime_utr;Parent=Msa0597040-mRNA-1
chr4_2	five_prime_UTR	28845319	28845395	28845319	ID=Msa0597040-mRNA-1:five_prime_utr;Parent=Msa0597040-mRNA-1
chr4_2	CDS	28845396	28845581	28845396	ID=Msa0597040-mRNA-1:cds;Parent=Msa0597040-mRNA-1
chr4_2	CDS	28846288	28846488	28846288	ID=Msa0597040-mRNA-1:cds;Parent=Msa0597040-mRNA-1
chr4_2	CDS	28846578	28846689	28846578	ID=Msa0597040-mRNA-1:cds;Parent=Msa0597040-mRNA-1
chr4_2	CDS	28847412	28847641	28847412	ID=Msa0597040-mRNA-1:cds;Parent=Msa0597040-mRNA-1
chr4_2	CDS	28847789	28847927	28847789	ID=Msa0597040-mRNA-1:cds;Parent=Msa0597040-mRNA-1
chr4_2	CDS	28848428	28848648	28848428	ID=Msa0597040-mRNA-1:cds;Parent=Msa0597040-mRNA-1
chr4_2	CDS	28848771	28848892	28848771	ID=Msa0597040-mRNA-1:cds;Parent=Msa0597040-mRNA-1
chr4_2	CDS	28850115	28850316	28850115	ID=Msa0597040-mRNA-1:cds;Parent=Msa0597040-mRNA-1
chr4_2	three_prime_UTR	28850317	28850471	28850317	ID=Msa0597040-mRNA-1:three_prime_utr;Parent=Msa0597040-mRNA-1

Gene Sequence

>Msa0597040

ATGCGTCCATTTCAAAGATTATCATTTTCTAGTTTATTATTATCACTAGGTTTGGTTTTGAATTTGGTGTTTGTGTGTAATGGAGGCACAACAAGTATTTTTGTTAGGAAGGTTGAGAAGAGCATTGATATGCCACTTGATAGCGATGTTTTTAAGGTTCCTCCTGGTTATAATGCTCCTCAGCAGGTTCATATAACACAAGGTGATCATGTGGGGAAAGCAGTGATCGTATCGTGGGTGACTGAGGATGAACCAGGGTCGGATGCAGTGCGTTACTGGAGTGAGAACAGCAAGCACAAGAAGCTAGCTAAAGGGAAATTTTTTACTTACAGATACTTCAATTACTCATCTGGTTTTATTCATCATGCCACTATAAGGAATTTGAAGTACAATACCAAATATTATTATGAGGTTGGACTTAAGAACACAACAAGGCAGTTTTGGTTTACAACTCCTCCTGCAATTGGTCCTGATGTGCCATACACATTTGGTCTCATAGGTGATCTTGGTCAGACTTTTGATTCAAACAGGACACTTTCTCACTATCAATTGAATTCAACAAATGGACAAACAGTGTTGTTTGTTGGAGATCTATCTTATGCAGATAACTACCCAAATCATGACAATGTTAGGTGGGATACTTGGGGAAGGTTTGCAGAGAGGAGTGTTGCTTATCAACCTTGGATATGGACTGTTGGAAACCATGAACTTGATTTCGCTCCAGAAATTGGTGAAAATGAACCATTCAAGCCTTTTTCGCACCGATACCATACTCCTTATAAAGCATCACAAAGTACTTCACCCTTTTGGTATTCTATCAAAAGAGCTTCAGCACACATCATTGTCTTGGCCTCATATTCAGCATATGGAAAATATACACCACAATACACATGGCTTGAAGAAGAGCTACCGAGAGTTAACAGGAAAAAAACTCCTTGGTTGATTGTTCTCATGCATTCACCTTGGTATAATAGCAACAGCTATCATTACATGGAAGGGGAAACAATGAGAGTAATGTTTGAGTCATGGTTTGTTAAGTACAAAGTTGATGTTGTGTTTGCTGGCCATGTACATGCCTACGAAAGATCTGAACGTGTCTCAAATATTGCATATAATATCGTAAATGGTATTTGCGCTCCCGTAAAAGATCTATCAGCTCCCGTATACATAAACATCGGAGATGGAGGGAATATCGAAGGCTTAGCAACCGAGTACACACAACCACAGCCAGAGTACTCAGCATTTAGAGAAGCCAGCTTTGGACATGCAATTTTTGACATAAAGAACAGGACACATGCTTACTATAGCTGGCATAGAAATCAAGATGGTGATGCTGTTAAGAGTGATTCCCTTTGGTTTTTCAATAGATTTTGGAACCCGGTTGATGATTCCAAACCTCATGGTTCCCATTGA

Protein sequence

>Msa0597040

MRPFQRLSFSSLLLSLGLVLNLVFVCNGGTTSIFVRKVEKSIDMPLDSDVFKVPPGYNAPQQVHITQGDHVGKAVIVSWVTEDEPGSDAVRYWSENSKHKKLAKGKFFTYRYFNYSSGFIHHATIRNLKYNTKYYYEVGLKNTTRQFWFTTPPAIGPDVPYTFGLIGDLGQTFDSNRTLSHYQLNSTNGQTVLFVGDLSYADNYPNHDNVRWDTWGRFAERSVAYQPWIWTVGNHELDFAPEIGENEPFKPFSHRYHTPYKASQSTSPFWYSIKRASAHIIVLASYSAYGKYTPQYTWLEEELPRVNRKKTPWLIVLMHSPWYNSNSYHYMEGETMRVMFESWFVKYKVDVVFAGHVHAYERSERVSNIAYNIVNGICAPVKDLSAPVYINIGDGGNIEGLATEYTQPQPEYSAFREASFGHAIFDIKNRTHAYYSWHRNQDGDAVKSDSLWFFNRFWNPVDDSKPHGSH*