Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0675690 | XP_013442399.1 | 97.028 | 471 | 13 | 1 | 1 | 470 | 1 | 471 | 0.0 | 951 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0675690 | sp|Q09131|PPAF_SOYBN | 82.589 | 448 | 78 | 0 | 23 | 470 | 17 | 464 | 0.0 | 792 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0675690 | A0A072TFW4 | 97.028 | 471 | 13 | 1 | 1 | 470 | 1 | 471 | 0.0 | 951 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0636350 | Msa0675690 | 0.833596 | 4.871481e-56 | -8.615850e-47 |
| Msa0649110 | Msa0675690 | 0.815211 | 1.038505e-51 | -8.615850e-47 |
| Msa0675690 | Msa0767760 | 0.809916 | 1.493577e-50 | -8.615850e-47 |
| Msa0675690 | Msa0768370 | 0.804571 | 2.026667e-49 | -8.615850e-47 |
| Msa0675690 | Msa0820850 | 0.809621 | 1.728863e-50 | -8.615850e-47 |
| Msa0675690 | Msa0824590 | 0.802638 | 5.103118e-49 | -8.615850e-47 |
| Msa0675690 | Msa0861130 | 0.809956 | 1.464533e-50 | -8.615850e-47 |
| Msa0675690 | Msa0899430 | 0.802752 | 4.834079e-49 | -8.615850e-47 |
| Msa0675690 | Msa0899450 | 0.811360 | 7.280905e-51 | -8.615850e-47 |
| Msa0675690 | Msa0916690 | 0.858423 | 8.322487e-63 | -8.615850e-47 |
| Msa0675690 | Msa0925810 | 0.810488 | 1.124163e-50 | -8.615850e-47 |
| Msa0675690 | Msa0925870 | 0.808575 | 2.895289e-50 | -8.615850e-47 |
| Msa0675690 | Msa0927380 | 0.819255 | 1.278303e-52 | -8.615850e-47 |
| Msa0675690 | Msa0964900 | 0.805357 | 1.388076e-49 | -8.615850e-47 |
| Msa0675690 | Msa0967280 | 0.818083 | 2.358550e-52 | -8.615850e-47 |
| Msa0675690 | Msa0976670 | 0.822110 | 2.822636e-53 | -8.615850e-47 |
| Msa0675690 | Msa0998680 | 0.807125 | 5.888355e-50 | -8.615850e-47 |
| Msa0675690 | Msa1000860 | 0.801894 | 7.258642e-49 | -8.615850e-47 |
| Msa0675690 | Msa1000890 | 0.815612 | 8.455034e-52 | -8.615850e-47 |
| Msa0675690 | Msa1000900 | 0.822759 | 1.994621e-53 | -8.615850e-47 |
| Msa0675690 | Msa1014540 | 0.809525 | 1.812569e-50 | -8.615850e-47 |
| Msa0675690 | Msa1108760 | 0.827461 | 1.544644e-54 | -8.615850e-47 |
| Msa0675690 | Msa1284680 | 0.806987 | 6.296874e-50 | -8.615850e-47 |
| Msa0675690 | Msa1319800 | 0.818863 | 1.569830e-52 | -8.615850e-47 |
| Msa0675690 | Msa1420820 | 0.805839 | 1.099606e-49 | -8.615850e-47 |
| Msa0153800 | Msa0675690 | 0.804462 | 2.135511e-49 | -8.615850e-47 |
| Msa0220740 | Msa0675690 | 0.817348 | 3.455960e-52 | -8.615850e-47 |
| Msa0434000 | Msa0675690 | 0.836940 | 6.968572e-57 | -8.615850e-47 |
| Msa0459260 | Msa0675690 | 0.803660 | 3.135213e-49 | -8.615850e-47 |
| Msa0265670 | Msa0675690 | 0.806163 | 9.397675e-50 | -8.615850e-47 |
| Msa0275020 | Msa0675690 | 0.800769 | 1.233487e-48 | -8.615850e-47 |
| Msa0342750 | Msa0675690 | 0.800982 | 1.116218e-48 | -8.615850e-47 |
| Msa0502890 | Msa0675690 | 0.801101 | 1.055421e-48 | -8.615850e-47 |
| Msa0540990 | Msa0675690 | 0.883160 | 5.676010e-71 | -8.615850e-47 |
| Msa0597040 | Msa0675690 | 0.947171 | 1.128277e-105 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0675690 | MtrunA17_Chr4g0019091 | 87.277 | 448 | 57 | 0 | 23 | 470 | 18 | 465 | 0.0 | 832 |
| Msa0675690 | MtrunA17_Chr1g0211041 | 83.011 | 465 | 78 | 1 | 7 | 470 | 3 | 467 | 0.0 | 799 |
| Msa0675690 | MtrunA17_Chr4g0019071 | 97.697 | 304 | 7 | 0 | 167 | 470 | 39 | 342 | 0.0 | 629 |
| Msa0675690 | MtrunA17_Chr4g0064541 | 61.343 | 432 | 164 | 2 | 28 | 458 | 23 | 452 | 0.0 | 553 |
| Msa0675690 | MtrunA17_Chr3g0098721 | 41.986 | 443 | 221 | 14 | 14 | 453 | 1 | 410 | 8.13e-102 | 311 |
| Msa0675690 | MtrunA17_Chr5g0443881 | 40.227 | 440 | 230 | 11 | 30 | 467 | 22 | 430 | 8.39e-100 | 306 |
| Msa0675690 | MtrunA17_Chr4g0019081 | 88.824 | 170 | 18 | 1 | 1 | 169 | 1 | 170 | 2.82e-99 | 295 |
| Msa0675690 | MtrunA17_Chr7g0266151 | 40.674 | 445 | 225 | 13 | 22 | 461 | 14 | 424 | 9.59e-97 | 298 |
| Msa0675690 | MtrunA17_Chr1g0178831 | 41.772 | 395 | 203 | 8 | 60 | 453 | 46 | 414 | 3.73e-96 | 296 |
| Msa0675690 | MtrunA17_Chr7g0266131 | 41.266 | 395 | 205 | 8 | 60 | 453 | 54 | 422 | 1.00e-94 | 293 |
| Msa0675690 | MtrunA17_Chr3g0121411 | 37.562 | 402 | 176 | 9 | 114 | 456 | 143 | 528 | 6.68e-76 | 247 |
| Msa0675690 | MtrunA17_Chr3g0121431 | 37.313 | 402 | 177 | 9 | 114 | 456 | 198 | 583 | 1.47e-74 | 245 |
| Msa0675690 | MtrunA17_Chr7g0236041 | 35.092 | 436 | 201 | 10 | 87 | 456 | 108 | 527 | 6.66e-74 | 242 |
| Msa0675690 | MtrunA17_Chr6g0453731 | 31.650 | 515 | 250 | 14 | 41 | 469 | 52 | 550 | 6.10e-73 | 241 |
| Msa0675690 | MtrunA17_Chr4g0022251 | 27.676 | 383 | 214 | 14 | 60 | 396 | 216 | 581 | 5.52e-26 | 111 |
| Msa0675690 | MtrunA17_Chr1g0173511 | 25.313 | 399 | 219 | 16 | 58 | 396 | 77 | 456 | 6.15e-24 | 104 |
| Msa0675690 | MtrunA17_Chr3g0116051 | 27.198 | 364 | 218 | 15 | 118 | 448 | 249 | 598 | 7.06e-24 | 105 |
| Msa0675690 | MtrunA17_Chr4g0057551 | 26.954 | 371 | 210 | 16 | 118 | 448 | 253 | 602 | 1.32e-22 | 100 |
| Msa0675690 | MtrunA17_Chr4g0043001 | 25.000 | 444 | 264 | 14 | 59 | 445 | 143 | 574 | 1.98e-22 | 100 |
| Msa0675690 | MtrunA17_Chr8g0364481 | 25.410 | 366 | 222 | 13 | 118 | 448 | 238 | 587 | 3.91e-22 | 99.8 |
| Msa0675690 | MtrunA17_Chr5g0419621 | 26.400 | 375 | 207 | 15 | 118 | 448 | 245 | 594 | 1.02e-21 | 98.2 |
| Msa0675690 | MtrunA17_Chr4g0043021 | 24.719 | 445 | 262 | 18 | 60 | 445 | 144 | 574 | 4.41e-15 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0675690 | AT2G16430.2 | 75.431 | 464 | 113 | 1 | 1 | 464 | 1 | 463 | 0.0 | 744 |
| Msa0675690 | AT2G27190.1 | 69.670 | 455 | 133 | 1 | 4 | 458 | 9 | 458 | 0.0 | 674 |
| Msa0675690 | AT1G56360.1 | 63.557 | 461 | 159 | 4 | 9 | 463 | 1 | 458 | 0.0 | 610 |
| Msa0675690 | AT4G36350.1 | 62.061 | 456 | 165 | 4 | 13 | 463 | 6 | 458 | 0.0 | 596 |
| Msa0675690 | AT2G16430.1 | 80.712 | 337 | 65 | 0 | 128 | 464 | 7 | 343 | 0.0 | 586 |
| Msa0675690 | AT5G34850.1 | 58.278 | 453 | 183 | 3 | 7 | 458 | 4 | 451 | 0.0 | 555 |
| Msa0675690 | AT2G18130.1 | 55.411 | 462 | 180 | 5 | 6 | 464 | 2 | 440 | 0.0 | 522 |
| Msa0675690 | AT3G46120.1 | 47.712 | 459 | 153 | 9 | 7 | 458 | 3 | 381 | 1.19e-137 | 401 |
| Msa0675690 | AT1G52940.1 | 60.082 | 243 | 92 | 4 | 46 | 285 | 1 | 241 | 4.84e-103 | 308 |
| Msa0675690 | AT3G20500.1 | 40.541 | 444 | 227 | 12 | 12 | 453 | 6 | 414 | 4.21e-98 | 302 |
| Msa0675690 | AT3G52820.1 | 41.919 | 396 | 201 | 8 | 60 | 453 | 47 | 415 | 1.01e-96 | 298 |
| Msa0675690 | AT3G52810.1 | 39.207 | 454 | 237 | 10 | 4 | 453 | 1 | 419 | 7.01e-93 | 288 |
| Msa0675690 | AT3G52780.1 | 40.181 | 443 | 229 | 13 | 16 | 453 | 5 | 416 | 4.83e-92 | 286 |
| Msa0675690 | AT3G07130.1 | 35.952 | 420 | 196 | 11 | 94 | 456 | 115 | 518 | 1.37e-73 | 241 |
| Msa0675690 | AT3G07130.2 | 33.333 | 453 | 196 | 12 | 94 | 456 | 115 | 551 | 7.97e-67 | 224 |
| Msa0675690 | AT2G32770.3 | 30.871 | 528 | 240 | 14 | 24 | 442 | 12 | 523 | 4.09e-66 | 222 |
| Msa0675690 | AT4G13700.1 | 34.043 | 423 | 212 | 13 | 34 | 407 | 33 | 437 | 2.78e-63 | 212 |
| Msa0675690 | AT3G52780.2 | 37.784 | 352 | 194 | 12 | 16 | 362 | 5 | 336 | 1.14e-59 | 200 |
| Msa0675690 | AT2G32770.2 | 33.596 | 381 | 173 | 9 | 112 | 427 | 62 | 427 | 6.18e-58 | 197 |
| Msa0675690 | AT2G32770.1 | 28.409 | 528 | 224 | 15 | 24 | 442 | 12 | 494 | 2.31e-52 | 184 |
| Msa0675690 | AT4G13700.2 | 33.067 | 375 | 195 | 12 | 34 | 359 | 33 | 400 | 3.06e-51 | 179 |
| Msa0675690 | AT5G50400.2 | 26.124 | 356 | 222 | 14 | 118 | 443 | 165 | 509 | 1.43e-22 | 100 |
| Msa0675690 | AT5G50400.1 | 26.124 | 356 | 222 | 14 | 118 | 443 | 237 | 581 | 1.66e-22 | 101 |
| Msa0675690 | AT1G13750.1 | 27.123 | 365 | 207 | 13 | 118 | 443 | 239 | 583 | 2.25e-21 | 97.8 |
| Msa0675690 | AT2G03450.1 | 25.330 | 454 | 250 | 16 | 58 | 445 | 141 | 571 | 5.33e-20 | 93.6 |
| Msa0675690 | AT1G13900.1 | 25.661 | 378 | 212 | 13 | 118 | 445 | 213 | 571 | 6.48e-20 | 93.2 |
| Msa0675690 | AT4G24890.1 | 25.275 | 364 | 225 | 15 | 118 | 448 | 241 | 590 | 2.17e-19 | 91.7 |
Find 108 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGATATATACTCATTATT+AGG | 0.159298 | 4_4:-24910942 | Msa0675690:five_prime_UTR |
| TCCAACTTCATAATAATATT+TGG | 0.191588 | 4_4:+24909870 | None:intergenic |
| TATCGGAAGCTTACAATTTC+CGG | 0.199314 | 4_4:+24908825 | None:intergenic |
| CACCTAACATTGTCATGATT+TGG | 0.217023 | 4_4:+24908933 | None:intergenic |
| GGTCGGATGCAGTGCGTTAC+TGG | 0.225321 | 4_4:-24910098 | Msa0675690:CDS |
| ATCTCCGATGTTTATGTATA+CGG | 0.235623 | 4_4:+24907641 | None:intergenic |
| TTGCTTATCAACCTTGGATA+TGG | 0.250325 | 4_4:-24908878 | Msa0675690:CDS |
| GTACTTTGTGATGCTTTATA+AGG | 0.272518 | 4_4:+24908621 | None:intergenic |
| ATTGCATATAATATCGTAAA+TGG | 0.285493 | 4_4:-24907696 | Msa0675690:CDS |
| ATTTGAACAATTAATGGAAT+TGG | 0.296827 | 4_4:+24911018 | None:intergenic |
| CCGGAGCAAAATCAAGTTCA+TGG | 0.302055 | 4_4:+24908844 | None:intergenic |
| CACAAAGTACTTCACCCTTT+TGG | 0.304317 | 4_4:-24908608 | Msa0675690:CDS |
| GGAACACAACAAGGCAGTTT+TGG | 0.315512 | 4_4:-24909843 | Msa0675690:CDS |
| TTATTCATCACGCCACTATA+AGG | 0.317273 | 4_4:-24909999 | Msa0675690:CDS |
| GTGATGCTTTATAAGGAGTA+TGG | 0.325433 | 4_4:+24908628 | None:intergenic |
| GAGATATATACTCATTATTA+GGG | 0.327736 | 4_4:-24910941 | Msa0675690:five_prime_UTR |
| AAAGTTGATGTTGTGTTTGC+TGG | 0.344435 | 4_4:-24907881 | Msa0675690:CDS |
| ACAATGTTAGGTGGGATACT+TGG | 0.352712 | 4_4:-24908923 | Msa0675690:CDS |
| CACTTATGTTTCTTGACCGT+TGG | 0.360235 | 4_4:-24906954 | None:intergenic |
| ACCTAACATTGTCATGATTT+GGG | 0.368382 | 4_4:+24908934 | None:intergenic |
| TCAATGGGAACCATGAGGTT+TGG | 0.378926 | 4_4:+24907074 | None:intergenic |
| TACCTTCAAATTCCTTATAG+TGG | 0.384082 | 4_4:+24909987 | None:intergenic |
| GTATGGTATCGGTGCGAAAA+AGG | 0.385639 | 4_4:+24908645 | None:intergenic |
| AATTTGGTGTTTGTGTGTAA+TGG | 0.386262 | 4_4:-24910831 | Msa0675690:CDS |
| TTTATTATTATCACTAGGTT+TGG | 0.389492 | 4_4:-24910859 | Msa0675690:CDS |
| AGATACTTCAATTACTCATC+TGG | 0.391362 | 4_4:-24910024 | Msa0675690:CDS |
| CCATACACATTTGGTCTCAT+AGG | 0.391563 | 4_4:-24909787 | Msa0675690:intron |
| TTTACAACTCCTCCTGCAAT+TGG | 0.394407 | 4_4:-24909820 | Msa0675690:CDS |
| GCATTTAGAGAAGCCAGCTT+TGG | 0.397912 | 4_4:-24907225 | Msa0675690:CDS |
| GAAAATGATAATCTTTGAAA+TGG | 0.399082 | 4_4:+24910885 | None:intergenic |
| ACCAAATATTATTATGAAGT+TGG | 0.399228 | 4_4:-24909871 | Msa0675690:CDS |
| CTGTTAAGAGTGATTCCCTT+TGG | 0.403017 | 4_4:-24907131 | Msa0675690:CDS |
| CCAAATGTGTATGGCACATC+AGG | 0.405903 | 4_4:+24909796 | None:intergenic |
| CAATGTTAGGTGGGATACTT+GGG | 0.412473 | 4_4:-24908922 | Msa0675690:CDS |
| TGGCTATAATGCTCCTCAAC+AGG | 0.417709 | 4_4:-24910727 | Msa0675690:intron |
| TCACATTGAGTATTCTTCAA+TGG | 0.418937 | 4_4:+24907058 | None:intergenic |
| CACATTGAGTATTCTTCAAT+GGG | 0.419089 | 4_4:+24907059 | None:intergenic |
| AAGAGCTACCGAGAGTTAAC+AGG | 0.420226 | 4_4:-24908021 | Msa0675690:CDS |
| CCTGATGTGCCATACACATT+TGG | 0.422920 | 4_4:-24909796 | Msa0675690:CDS |
| GGCACATCAGGACCAATTGC+AGG | 0.425315 | 4_4:+24909808 | None:intergenic |
| ACCCAAATCATGACAATGTT+AGG | 0.431662 | 4_4:-24908935 | Msa0675690:CDS |
| TGAGGTTTGGAATCATCAAC+CGG | 0.433017 | 4_4:+24907087 | None:intergenic |
| ATTATTATGAAGTTGGACTT+AGG | 0.436283 | 4_4:-24909864 | Msa0675690:CDS |
| TTGGCCTCATATTCAGCATA+TGG | 0.449605 | 4_4:-24908549 | Msa0675690:intron |
| GGCAGACTTATGATTCAAAC+AGG | 0.451647 | 4_4:-24909037 | Msa0675690:CDS |
| TATCAGTTGAACTCAACAAA+TGG | 0.464353 | 4_4:-24909002 | Msa0675690:CDS |
| GGACAAACAGTGTTGTTTGT+TGG | 0.465570 | 4_4:-24908981 | Msa0675690:CDS |
| AGTGTGGAATATTCAGATAA+GGG | 0.466665 | 4_4:+24911046 | None:intergenic |
| TTCAGCACACATCATTGTCT+TGG | 0.481429 | 4_4:-24908568 | Msa0675690:CDS |
| AATACCATATGCTGAATATG+AGG | 0.494395 | 4_4:+24908545 | None:intergenic |
| TCTCTAAATGCTGAGTACTC+TGG | 0.496127 | 4_4:+24907237 | None:intergenic |
| AGCACAAGAAGCTAGCTAAA+GGG | 0.498611 | 4_4:-24910062 | Msa0675690:CDS |
| GGAAAGCAGTGATCGTATCA+TGG | 0.499096 | 4_4:-24910140 | Msa0675690:CDS |
| CCTATGAGACCAAATGTGTA+TGG | 0.507863 | 4_4:+24909787 | None:intergenic |
| TAGTGTGGAATATTCAGATA+AGG | 0.513190 | 4_4:+24911045 | None:intergenic |
| GGACACATGCTTACTATAGC+TGG | 0.517434 | 4_4:-24907176 | Msa0675690:CDS |
| AAGCACAAGAAGCTAGCTAA+AGG | 0.523147 | 4_4:-24910063 | Msa0675690:CDS |
| TCTCCGATGTTTATGTATAC+GGG | 0.526279 | 4_4:+24907642 | None:intergenic |
| TGAGAGTAATGTTTGAGTCA+TGG | 0.529431 | 4_4:-24907916 | Msa0675690:CDS |
| CGCCACTATAAGGAATTTGA+AGG | 0.534447 | 4_4:-24909989 | Msa0675690:intron |
| GGAGTGTTGCTTATCAACCT+TGG | 0.535303 | 4_4:-24908884 | Msa0675690:CDS |
| TGTTCAAGCCACGCATATTG+TGG | 0.539103 | 4_4:+24908043 | None:intergenic |
| ATCTTTCGTAGGCATGTACA+TGG | 0.549448 | 4_4:+24907858 | None:intergenic |
| ACAGCTATCATTACATGGAA+GGG | 0.559696 | 4_4:-24907946 | Msa0675690:CDS |
| GTAACGCACTGCATCCGACC+CGG | 0.561698 | 4_4:+24910101 | None:intergenic |
| TGGGTGACTGAGGATGAACC+CGG | 0.563961 | 4_4:-24910120 | Msa0675690:CDS |
| AACAGCTATCATTACATGGA+AGG | 0.564929 | 4_4:-24907947 | Msa0675690:CDS |
| TGTTGAGGAGCATTATAGCC+AGG | 0.567984 | 4_4:+24910729 | None:intergenic |
| TACATAAACATCGGAGATGG+AGG | 0.568213 | 4_4:-24907636 | Msa0675690:CDS |
| AATGCTGAGTACTCTGGCTG+TGG | 0.569296 | 4_4:+24907243 | None:intergenic |
| CTTTATAAGGAGTATGGTAT+CGG | 0.573117 | 4_4:+24908634 | None:intergenic |
| AATGGAATTGGCATATAGTG+TGG | 0.573258 | 4_4:+24911030 | None:intergenic |
| CAACCTTGGATATGGACTGT+AGG | 0.578235 | 4_4:-24908870 | Msa0675690:CDS |
| CAGCTATCATTACATGGAAG+GGG | 0.582038 | 4_4:-24907945 | Msa0675690:CDS |
| CAAATCATGACAATGTTAGG+TGG | 0.582738 | 4_4:-24908932 | Msa0675690:CDS |
| TTGTTCTCATGCATTCACCT+TGG | 0.582761 | 4_4:-24907979 | Msa0675690:CDS |
| GTTGATGATTCCAAACCTCA+TGG | 0.582800 | 4_4:-24907084 | Msa0675690:CDS |
| GAAAGCAGTGATCGTATCAT+GGG | 0.584870 | 4_4:-24910139 | Msa0675690:CDS |
| TAGCAACAGCTATCATTACA+TGG | 0.590375 | 4_4:-24907951 | Msa0675690:CDS |
| TTGGTGTTTGTGTGTAATGG+AGG | 0.590798 | 4_4:-24910828 | Msa0675690:CDS |
| TAACGCACTGCATCCGACCC+GGG | 0.594415 | 4_4:+24910102 | None:intergenic |
| TTTCCTACAGTCCATATCCA+AGG | 0.604593 | 4_4:+24908867 | None:intergenic |
| GACTGAGGATGAACCCGGGT+CGG | 0.605281 | 4_4:-24910115 | Msa0675690:CDS |
| AAATCATGACAATGTTAGGT+GGG | 0.605681 | 4_4:-24908931 | Msa0675690:CDS |
| GTATACATAAACATCGGAGA+TGG | 0.606702 | 4_4:-24907639 | Msa0675690:CDS |
| ATAACACAAGGTGATCATGT+GGG | 0.617402 | 4_4:-24910162 | Msa0675690:CDS |
| TATAACACAAGGTGATCATG+TGG | 0.618384 | 4_4:-24910163 | Msa0675690:CDS |
| TAACACAAGGTGATCATGTG+GGG | 0.622210 | 4_4:-24910161 | Msa0675690:CDS |
| GTGTGGAATATTCAGATAAG+GGG | 0.622272 | 4_4:+24911047 | None:intergenic |
| AGTACTTACAGATCTTTCGT+AGG | 0.631526 | 4_4:+24907847 | None:intergenic |
| TCTAGTTTATTATTATCACT+AGG | 0.632946 | 4_4:-24910864 | Msa0675690:CDS |
| AGCTGGCATAGAAATCAAGA+TGG | 0.638512 | 4_4:-24907159 | Msa0675690:CDS |
| GGAGATGGAGGGAATATCGA+AGG | 0.640067 | 4_4:-24907624 | Msa0675690:CDS |
| AATATACACCACAATATGCG+TGG | 0.647948 | 4_4:-24908051 | Msa0675690:CDS |
| ACATAAACATCGGAGATGGA+GGG | 0.656509 | 4_4:-24907635 | Msa0675690:CDS |
| ATGTTAGGTGGGATACTTGG+GGG | 0.660542 | 4_4:-24908920 | Msa0675690:CDS |
| AATGTTAGGTGGGATACTTG+GGG | 0.667822 | 4_4:-24908921 | Msa0675690:CDS |
| GAGGTTTGGAATCATCAACC+GGG | 0.673172 | 4_4:+24907088 | None:intergenic |
| ATTCTTCAATGGGAACCATG+AGG | 0.678851 | 4_4:+24907069 | None:intergenic |
| TTGGACTTAGGAACACAACA+AGG | 0.679845 | 4_4:-24909852 | Msa0675690:CDS |
| TGCATGAGAACAATCAACCA+AGG | 0.682000 | 4_4:+24907989 | None:intergenic |
| ACATCAGGACCAATTGCAGG+AGG | 0.687083 | 4_4:+24909811 | None:intergenic |
| ATGAAGGTTCATATAACACA+AGG | 0.696049 | 4_4:-24910174 | Msa0675690:intron |
| GGGTGACTGAGGATGAACCC+GGG | 0.702545 | 4_4:-24910119 | Msa0675690:CDS |
| TAGCTGTTGCTATTATACCA+AGG | 0.710700 | 4_4:+24907962 | None:intergenic |
| GATCGTATCATGGGTGACTG+AGG | 0.718495 | 4_4:-24910130 | Msa0675690:CDS |
| GCTCCCGTATACATAAACAT+CGG | 0.723543 | 4_4:-24907645 | Msa0675690:CDS |
| TGAGGAGCATTATAGCCAGG+AGG | 0.751028 | 4_4:+24910732 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATATGTTTTTAAATCA+CGG | - | chr4_4:24907350-24907369 | Msa0675690:intron | 10.0% |
| !! | GAAAATTCTAATAAAAATTT+AGG | - | chr4_4:24907584-24907603 | Msa0675690:intron | 10.0% |
| !!! | TTATTTAATTTTTAACTTCA+GGG | + | chr4_4:24909791-24909810 | None:intergenic | 10.0% |
| !!! | TTTATTTAATTTTTAACTTC+AGG | + | chr4_4:24909792-24909811 | None:intergenic | 10.0% |
| !! | AATATGATTTGAACAATTAA+TGG | + | chr4_4:24906998-24907017 | None:intergenic | 15.0% |
| !! | AACAGAAATTCAATATAATA+TGG | + | chr4_4:24907449-24907468 | None:intergenic | 15.0% |
| !! | ATTCTTGATATTATAAAGAA+TGG | - | chr4_4:24907628-24907647 | Msa0675690:CDS | 15.0% |
| !!! | AGTTTTAATGTTTTAATACA+TGG | - | chr4_4:24907801-24907820 | Msa0675690:intron | 15.0% |
| !!! | TTGATATTTTTGCTTATTTT+TGG | - | chr4_4:24908103-24908122 | Msa0675690:intron | 15.0% |
| !!! | TGATTTTCTCAAATTATTAA+CGG | + | chr4_4:24908383-24908402 | None:intergenic | 15.0% |
| !!! | AAAATTAGATCGATTTATAT+CGG | + | chr4_4:24909202-24909221 | None:intergenic | 15.0% |
| !!! | TTATTGTGTAAACTTTTAAA+GGG | - | chr4_4:24909859-24909878 | Msa0675690:CDS | 15.0% |
| !!! | ATATAATCTTCATTTTTCTT+AGG | - | chr4_4:24909931-24909950 | Msa0675690:intron | 15.0% |
| !!! | TTTCAAAATATTTTGTGAAA+AGG | + | chr4_4:24910208-24910227 | None:intergenic | 15.0% |
| !! | ATTTGAACAATTAATGGAAT+TGG | + | chr4_4:24906992-24907011 | None:intergenic | 20.0% |
| !! | TGAGATATATACTCATTATT+AGG | - | chr4_4:24907065-24907084 | Msa0675690:exon | 20.0% |
| !! | GAGATATATACTCATTATTA+GGG | - | chr4_4:24907066-24907085 | Msa0675690:exon | 20.0% |
| !!! | GAAAATGATAATCTTTGAAA+TGG | + | chr4_4:24907125-24907144 | None:intergenic | 20.0% |
| !!! | TCTAGTTTATTATTATCACT+AGG | - | chr4_4:24907143-24907162 | Msa0675690:CDS | 20.0% |
| !! | TTTATTATTATCACTAGGTT+TGG | - | chr4_4:24907148-24907167 | Msa0675690:CDS | 20.0% |
| !! | TGGAAGTAAATATACAAAAT+AGG | - | chr4_4:24907648-24907667 | Msa0675690:CDS | 20.0% |
| !! | AAACATTAAAACTTAAAGCA+AGG | + | chr4_4:24907794-24907813 | None:intergenic | 20.0% |
| !!! | TTAATGTTTTAATACATGGT+TGG | - | chr4_4:24907805-24907824 | Msa0675690:intron | 20.0% |
| !! | ACCAAATATTATTATGAAGT+TGG | - | chr4_4:24908136-24908155 | Msa0675690:intron | 20.0% |
| !! | TCCAACTTCATAATAATATT+TGG | + | chr4_4:24908140-24908159 | None:intergenic | 20.0% |
| !!! | ATTTTAAGATATCCTTCAAT+TGG | - | chr4_4:24908516-24908535 | Msa0675690:intron | 20.0% |
| !!! | TTTTAAGATATCCTTCAATT+GGG | - | chr4_4:24908517-24908536 | Msa0675690:intron | 20.0% |
| !!! | ATATAAATATTTCCTTTTGC+AGG | - | chr4_4:24908601-24908620 | Msa0675690:CDS | 20.0% |
| !! | ACAAATCATAACTAATCATT+TGG | - | chr4_4:24908690-24908709 | Msa0675690:intron | 20.0% |
| !!! | GATATAAATCGATCTAATTT+TGG | - | chr4_4:24909201-24909220 | Msa0675690:intron | 20.0% |
| !!! | ATTTTGGTAAATGATTAACA+TGG | - | chr4_4:24909300-24909319 | Msa0675690:intron | 20.0% |
| !!! | ATCTAATAGTGGATTTTTAT+CGG | - | chr4_4:24909700-24909719 | Msa0675690:intron | 20.0% |
| !! | AAATTATTACAAGGATTTAC+AGG | + | chr4_4:24909763-24909782 | None:intergenic | 20.0% |
| !!! | CTTATTGTGTAAACTTTTAA+AGG | - | chr4_4:24909858-24909877 | Msa0675690:CDS | 20.0% |
| !! | ATTGCATATAATATCGTAAA+TGG | - | chr4_4:24910311-24910330 | Msa0675690:intron | 20.0% |
| !!! | AGTCATTAAGTTTTCATTTA+TGG | + | chr4_4:24910428-24910447 | None:intergenic | 20.0% |
| !! | AATATTACAGAAAGAGAAAT+CGG | + | chr4_4:24910598-24910617 | None:intergenic | 20.0% |
| !!! | TTTCTGTAATATTTTGTTGA+AGG | - | chr4_4:24910605-24910624 | Msa0675690:intron | 20.0% |
| !! | AATGATAGAGACAATTAAAA+AGG | - | chr4_4:24910691-24910710 | Msa0675690:intron | 20.0% |
| !! | AAATCTATTGAAAAACCAAA+GGG | + | chr4_4:24910894-24910913 | None:intergenic | 20.0% |
| !! | AAAATCTATTGAAAAACCAA+AGG | + | chr4_4:24910895-24910914 | None:intergenic | 20.0% |
| !!! | TTTGGTTTTTCAATAGATTT+TGG | - | chr4_4:24910894-24910913 | Msa0675690:CDS | 20.0% |
| !!! | AACAAGTATTTTTGTTAGGA+AGG | - | chr4_4:24907205-24907224 | Msa0675690:CDS | 25.0% |
| ! | TTTCTGTTAAACTATACTCT+TGG | - | chr4_4:24907461-24907480 | Msa0675690:intron | 25.0% |
| !!! | CGTTGCAATTTTTTATACTA+CGG | - | chr4_4:24907562-24907581 | Msa0675690:intron | 25.0% |
| ! | AACTTATGATGATACATGTT+TGG | - | chr4_4:24907717-24907736 | Msa0675690:intron | 25.0% |
| ! | AAATATCAAAACTTTGCATC+TGG | + | chr4_4:24908092-24908111 | None:intergenic | 25.0% |
| ! | ATTATTATGAAGTTGGACTT+AGG | - | chr4_4:24908143-24908162 | Msa0675690:intron | 25.0% |
| !! | CTTTTGATAGAATACCAAAA+GGG | + | chr4_4:24909416-24909435 | None:intergenic | 25.0% |
| !! | TCTTTTGATAGAATACCAAA+AGG | + | chr4_4:24909417-24909436 | None:intergenic | 25.0% |
| ! | AATTGATCCATTGGAAATAA+TGG | + | chr4_4:24909555-24909574 | None:intergenic | 25.0% |
| ! | TGCAAATAAAATTGATCCAT+TGG | + | chr4_4:24909564-24909583 | None:intergenic | 25.0% |
| !! | TGTTTTACAATAACAGTTTG+TGG | + | chr4_4:24909602-24909621 | None:intergenic | 25.0% |
| !!! | ATTTTTGAGTTGTCGTTTTA+AGG | - | chr4_4:24910470-24910489 | Msa0675690:intron | 25.0% |
| !! | CAATTTTTGACATAAAGAAC+AGG | - | chr4_4:24910810-24910829 | Msa0675690:CDS | 25.0% |
| !!! | TTTCTAGTCTAGACTTTTTT+TGG | - | chr4_4:24911009-24911028 | Msa0675690:intron | 25.0% |
| AGTGTGGAATATTCAGATAA+GGG | + | chr4_4:24906964-24906983 | None:intergenic | 30.0% | |
| TAGTGTGGAATATTCAGATA+AGG | + | chr4_4:24906965-24906984 | None:intergenic | 30.0% | |
| !!! | ACTAGGTTTGGTTTTGAATT+TGG | - | chr4_4:24907160-24907179 | Msa0675690:CDS | 30.0% |
| !! | AATTTGGTGTTTGTGTGTAA+TGG | - | chr4_4:24907176-24907195 | Msa0675690:CDS | 30.0% |
| !! | GCACAACAAGTATTTTTGTT+AGG | - | chr4_4:24907201-24907220 | Msa0675690:CDS | 30.0% |
| TTAAAAACATCGCTATCAAG+TGG | + | chr4_4:24907251-24907270 | None:intergenic | 30.0% | |
| !!! | ACTTGATAGCGATGTTTTTA+AGG | - | chr4_4:24907250-24907269 | Msa0675690:CDS | 30.0% |
| GAATAGAAAAATACCTGTTG+AGG | + | chr4_4:24907296-24907315 | None:intergenic | 30.0% | |
| ! | TCCAATTTTGAATTGAACCA+TGG | - | chr4_4:24907317-24907336 | Msa0675690:intron | 30.0% |
| TCCATGGTTCAATTCAAAAT+TGG | + | chr4_4:24907321-24907340 | None:intergenic | 30.0% | |
| TATATATATCCCTTCTTCCA+TGG | + | chr4_4:24907337-24907356 | None:intergenic | 30.0% | |
| GAAAATTGCAGTTAAAATGC+AGG | - | chr4_4:24907397-24907416 | Msa0675690:intron | 30.0% | |
| TTAAAATGCAGGTTTAATCG+TGG | - | chr4_4:24907408-24907427 | Msa0675690:intron | 30.0% | |
| GTGTTATATGAACCTTCATT+AGG | + | chr4_4:24907832-24907851 | None:intergenic | 30.0% | |
| ATGAAGGTTCATATAACACA+AGG | - | chr4_4:24907833-24907852 | Msa0675690:intron | 30.0% | |
| AGATACTTCAATTACTCATC+TGG | - | chr4_4:24907983-24908002 | Msa0675690:CDS | 30.0% | |
| TACCTTCAAATTCCTTATAG+TGG | + | chr4_4:24908023-24908042 | None:intergenic | 30.0% | |
| AAACAACTTGCATATGACAA+GGG | + | chr4_4:24908064-24908083 | None:intergenic | 30.0% | |
| AGGTAAACTGTATTCTTTCA+TGG | - | chr4_4:24908240-24908259 | Msa0675690:intron | 30.0% | |
| ACCACAATGATATCTCATAA+AGG | + | chr4_4:24908274-24908293 | None:intergenic | 30.0% | |
| TTCAGTGCAATTATATGTGT+CGG | - | chr4_4:24908408-24908427 | Msa0675690:intron | 30.0% | |
| CTTTCAGTTCTCTTACAAAT+TGG | - | chr4_4:24908489-24908508 | Msa0675690:intron | 30.0% | |
| ACTATTCAGTCTTTACAACA+TGG | - | chr4_4:24908859-24908878 | Msa0675690:CDS | 30.0% | |
| TATCAGTTGAACTCAACAAA+TGG | - | chr4_4:24909005-24909024 | Msa0675690:CDS | 30.0% | |
| ACCTAACATTGTCATGATTT+GGG | + | chr4_4:24909076-24909095 | None:intergenic | 30.0% | |
| AAATCATGACAATGTTAGGT+GGG | - | chr4_4:24909076-24909095 | Msa0675690:intron | 30.0% | |
| ! | CATTTTCCAAGTCGAAATTT+TGG | - | chr4_4:24909284-24909303 | Msa0675690:intron | 30.0% |
| CATTTACCAAAATTTCGACT+TGG | + | chr4_4:24909293-24909312 | None:intergenic | 30.0% | |
| ! | CTTTATAAGGAGTATGGTAT+CGG | + | chr4_4:24909376-24909395 | None:intergenic | 30.0% |
| GTACTTTGTGATGCTTTATA+AGG | + | chr4_4:24909389-24909408 | None:intergenic | 30.0% | |
| AATACCATATGCTGAATATG+AGG | + | chr4_4:24909465-24909484 | None:intergenic | 30.0% | |
| TAGAAATTAGTACTGTGACA+TGG | + | chr4_4:24909662-24909681 | None:intergenic | 30.0% | |
| ACTATTAGATGTTAGTGCAA+AGG | + | chr4_4:24909690-24909709 | None:intergenic | 30.0% | |
| TTTGCACTAACATCTAATAG+TGG | - | chr4_4:24909689-24909708 | Msa0675690:intron | 30.0% | |
| AGGGACGTAAAATTATTACA+AGG | + | chr4_4:24909772-24909791 | None:intergenic | 30.0% | |
| !!! | GTTTTTTTCCTGTTAACTCT+CGG | + | chr4_4:24909997-24910016 | None:intergenic | 30.0% |
| TTAACAGGAAAAAAACTCCT+TGG | - | chr4_4:24910001-24910020 | Msa0675690:CDS | 30.0% | |
| ATCTCCGATGTTTATGTATA+CGG | + | chr4_4:24910369-24910388 | None:intergenic | 30.0% | |
| TTTCATTTATGGAGCTTACT+CGG | + | chr4_4:24910417-24910436 | None:intergenic | 30.0% | |
| ATGAACATGATTTGAATTGC+AGG | - | chr4_4:24910732-24910751 | Msa0675690:CDS | 30.0% | |
| !!! | TTTCAATAGATTTTGGAACC+CGG | - | chr4_4:24910901-24910920 | Msa0675690:exon | 30.0% |
| CACATTGAGTATTCTTCAAT+GGG | + | chr4_4:24910951-24910970 | None:intergenic | 30.0% | |
| TCACATTGAGTATTCTTCAA+TGG | + | chr4_4:24910952-24910971 | None:intergenic | 30.0% | |
| GTGTGGAATATTCAGATAAG+GGG | + | chr4_4:24906963-24906982 | None:intergenic | 35.0% | |
| AATGGAATTGGCATATAGTG+TGG | + | chr4_4:24906980-24906999 | None:intergenic | 35.0% | |
| TTGAATTGAACCATGGAAGA+AGG | - | chr4_4:24907324-24907343 | Msa0675690:intron | 35.0% | |
| TGAATTGAACCATGGAAGAA+GGG | - | chr4_4:24907325-24907344 | Msa0675690:intron | 35.0% | |
| ! | GATGATACATGTTTGGTCTT+TGG | - | chr4_4:24907724-24907743 | Msa0675690:intron | 35.0% |
| TATAACACAAGGTGATCATG+TGG | - | chr4_4:24907844-24907863 | Msa0675690:intron | 35.0% | |
| ATAACACAAGGTGATCATGT+GGG | - | chr4_4:24907845-24907864 | Msa0675690:intron | 35.0% | |
| TTATTCATCACGCCACTATA+AGG | - | chr4_4:24908008-24908027 | Msa0675690:CDS | 35.0% | |
| GAAACAACTTGCATATGACA+AGG | + | chr4_4:24908065-24908084 | None:intergenic | 35.0% | |
| GCCTTTATGAGATATCATTG+TGG | - | chr4_4:24908270-24908289 | Msa0675690:intron | 35.0% | |
| TTGTAAGAGAACTGAAAGCA+CGG | + | chr4_4:24908487-24908506 | None:intergenic | 35.0% | |
| TAAGATATCCTTCAATTGGG+TGG | - | chr4_4:24908520-24908539 | Msa0675690:intron | 35.0% | |
| TCTCATATGCCAAGATACAT+AGG | + | chr4_4:24908555-24908574 | None:intergenic | 35.0% | |
| AGAAAGATATGTCCTGCAAA+AGG | + | chr4_4:24908616-24908635 | None:intergenic | 35.0% | |
| GAAAAGGATGCTACATTAGT+TGG | + | chr4_4:24908939-24908958 | None:intergenic | 35.0% | |
| ! | ACTAATGTAGCATCCTTTTC+AGG | - | chr4_4:24908939-24908958 | Msa0675690:CDS | 35.0% |
| ACCCAAATCATGACAATGTT+AGG | - | chr4_4:24909072-24909091 | Msa0675690:intron | 35.0% | |
| CACCTAACATTGTCATGATT+TGG | + | chr4_4:24909077-24909096 | None:intergenic | 35.0% | |
| CAAATCATGACAATGTTAGG+TGG | - | chr4_4:24909075-24909094 | Msa0675690:intron | 35.0% | |
| TTGCTTATCAACCTTGGATA+TGG | - | chr4_4:24909129-24909148 | Msa0675690:intron | 35.0% | |
| TATCGGAAGCTTACAATTTC+CGG | + | chr4_4:24909185-24909204 | None:intergenic | 35.0% | |
| GTGATGCTTTATAAGGAGTA+TGG | + | chr4_4:24909382-24909401 | None:intergenic | 35.0% | |
| ACCATACATACATGCATATG+TGG | - | chr4_4:24909510-24909529 | Msa0675690:intron | 35.0% | |
| TCCACATATGCATGTATGTA+TGG | + | chr4_4:24909514-24909533 | None:intergenic | 35.0% | |
| ! | GCTGATTCCATTATTTCCAA+TGG | - | chr4_4:24909545-24909564 | Msa0675690:intron | 35.0% |
| TACAAGGATTTACAGGTATG+CGG | + | chr4_4:24909756-24909775 | None:intergenic | 35.0% | |
| AACATGGACAAATGATCACT+TGG | - | chr4_4:24909822-24909841 | Msa0675690:CDS | 35.0% | |
| AATATACACCACAATATGCG+TGG | - | chr4_4:24909956-24909975 | Msa0675690:intron | 35.0% | |
| ! | TAGCTGTTGCTATTATACCA+AGG | + | chr4_4:24910048-24910067 | None:intergenic | 35.0% |
| TAGCAACAGCTATCATTACA+TGG | - | chr4_4:24910056-24910075 | Msa0675690:CDS | 35.0% | |
| AACAGCTATCATTACATGGA+AGG | - | chr4_4:24910060-24910079 | Msa0675690:CDS | 35.0% | |
| ACAGCTATCATTACATGGAA+GGG | - | chr4_4:24910061-24910080 | Msa0675690:CDS | 35.0% | |
| TGAGAGTAATGTTTGAGTCA+TGG | - | chr4_4:24910091-24910110 | Msa0675690:CDS | 35.0% | |
| !! | AAAGTTGATGTTGTGTTTGC+TGG | - | chr4_4:24910126-24910145 | Msa0675690:CDS | 35.0% |
| AGTACTTACAGATCTTTCGT+AGG | + | chr4_4:24910163-24910182 | None:intergenic | 35.0% | |
| TCACATGAATCAGTACTCTT+TGG | + | chr4_4:24910253-24910272 | None:intergenic | 35.0% | |
| AAGCGATATATGTTTGTGTC+AGG | - | chr4_4:24910274-24910293 | Msa0675690:intron | 35.0% | |
| TCTCCGATGTTTATGTATAC+GGG | + | chr4_4:24910368-24910387 | None:intergenic | 35.0% | |
| GTATACATAAACATCGGAGA+TGG | - | chr4_4:24910368-24910387 | Msa0675690:intron | 35.0% | |
| ATTACAGAAAGAGAAATCGG+TGG | + | chr4_4:24910595-24910614 | None:intergenic | 35.0% | |
| AAAAATTGCATGTCCAAAGC+TGG | + | chr4_4:24910798-24910817 | None:intergenic | 35.0% | |
| ! | TTGGTGTTTGTGTGTAATGG+AGG | - | chr4_4:24907179-24907198 | Msa0675690:CDS | 40.0% |
| !!! | GATGTTTTTAAGGTTCCTCC+TGG | - | chr4_4:24907260-24907279 | Msa0675690:intron | 40.0% |
| CATTCCTACATGCATTGTTG+TGG | - | chr4_4:24907751-24907770 | Msa0675690:intron | 40.0% | |
| GATTCCACAACAATGCATGT+AGG | + | chr4_4:24907758-24907777 | None:intergenic | 40.0% | |
| ! | TACATGGTTGGTCCTAATGA+AGG | - | chr4_4:24907817-24907836 | Msa0675690:intron | 40.0% |
| TAACACAAGGTGATCATGTG+GGG | - | chr4_4:24907846-24907865 | Msa0675690:intron | 40.0% | |
| GAAAGCAGTGATCGTATCAT+GGG | - | chr4_4:24907868-24907887 | Msa0675690:CDS | 40.0% | |
| AAGCACAAGAAGCTAGCTAA+AGG | - | chr4_4:24907944-24907963 | Msa0675690:CDS | 40.0% | |
| AGCACAAGAAGCTAGCTAAA+GGG | - | chr4_4:24907945-24907964 | Msa0675690:CDS | 40.0% | |
| CGCCACTATAAGGAATTTGA+AGG | - | chr4_4:24908018-24908037 | Msa0675690:CDS | 40.0% | |
| TGCATATGACAAGGGAGTAA+TGG | + | chr4_4:24908056-24908075 | None:intergenic | 40.0% | |
| TTGGACTTAGGAACACAACA+AGG | - | chr4_4:24908155-24908174 | Msa0675690:intron | 40.0% | |
| TTTACAACTCCTCCTGCAAT+TGG | - | chr4_4:24908187-24908206 | Msa0675690:intron | 40.0% | |
| CCTATGAGACCAAATGTGTA+TGG | + | chr4_4:24908223-24908242 | None:intergenic | 40.0% | |
| CCATACACATTTGGTCTCAT+AGG | - | chr4_4:24908220-24908239 | Msa0675690:intron | 40.0% | |
| ATATCCTTCAATTGGGTGGA+TGG | - | chr4_4:24908524-24908543 | Msa0675690:intron | 40.0% | |
| ATGGAGTCTCCTATGTATCT+TGG | - | chr4_4:24908543-24908562 | Msa0675690:intron | 40.0% | |
| ATCTGACGACTTTGACTGAT+TGG | - | chr4_4:24908756-24908775 | Msa0675690:intron | 40.0% | |
| AAGGATGCTACATTAGTTGG+TGG | + | chr4_4:24908936-24908955 | None:intergenic | 40.0% | |
| !!! | CATCCTTTTCAGGTGATCTT+GGG | - | chr4_4:24908949-24908968 | Msa0675690:CDS | 40.0% |
| GGCAGACTTATGATTCAAAC+AGG | - | chr4_4:24908970-24908989 | Msa0675690:CDS | 40.0% | |
| !! | GGACAAACAGTGTTGTTTGT+TGG | - | chr4_4:24909026-24909045 | Msa0675690:CDS | 40.0% |
| ACAATGTTAGGTGGGATACT+TGG | - | chr4_4:24909084-24909103 | Msa0675690:intron | 40.0% | |
| CAATGTTAGGTGGGATACTT+GGG | - | chr4_4:24909085-24909104 | Msa0675690:intron | 40.0% | |
| AATGTTAGGTGGGATACTTG+GGG | - | chr4_4:24909086-24909105 | Msa0675690:intron | 40.0% | |
| TTTCCTACAGTCCATATCCA+AGG | + | chr4_4:24909143-24909162 | None:intergenic | 40.0% | |
| ! | CCATGAACTTGATTTTGCTC+CGG | - | chr4_4:24909163-24909182 | Msa0675690:intron | 40.0% |
| ATGGATCAATGATTGCTTGC+AGG | - | chr4_4:24909319-24909338 | Msa0675690:intron | 40.0% | |
| TGGATCAATGATTGCTTGCA+GGG | - | chr4_4:24909320-24909339 | Msa0675690:intron | 40.0% | |
| !! | CACAAAGTACTTCACCCTTT+TGG | - | chr4_4:24909399-24909418 | Msa0675690:intron | 40.0% |
| TTCAGCACACATCATTGTCT+TGG | - | chr4_4:24909439-24909458 | Msa0675690:intron | 40.0% | |
| TTGGCCTCATATTCAGCATA+TGG | - | chr4_4:24909458-24909477 | Msa0675690:intron | 40.0% | |
| AGTACTGTGACATGGAAACA+TGG | + | chr4_4:24909654-24909673 | None:intergenic | 40.0% | |
| TGCATGAGAACAATCAACCA+AGG | + | chr4_4:24910021-24910040 | None:intergenic | 40.0% | |
| TTGTTCTCATGCATTCACCT+TGG | - | chr4_4:24910028-24910047 | Msa0675690:CDS | 40.0% | |
| CAGCTATCATTACATGGAAG+GGG | - | chr4_4:24910062-24910081 | Msa0675690:CDS | 40.0% | |
| ATCTTTCGTAGGCATGTACA+TGG | + | chr4_4:24910152-24910171 | None:intergenic | 40.0% | |
| ! | GGAGCTGATAGATCTTTTAC+GGG | + | chr4_4:24910347-24910366 | None:intergenic | 40.0% |
| ! | GGGAGCTGATAGATCTTTTA+CGG | + | chr4_4:24910348-24910367 | None:intergenic | 40.0% |
| GCTCCCGTATACATAAACAT+CGG | - | chr4_4:24910362-24910381 | Msa0675690:intron | 40.0% | |
| TACATAAACATCGGAGATGG+AGG | - | chr4_4:24910371-24910390 | Msa0675690:intron | 40.0% | |
| ACATAAACATCGGAGATGGA+GGG | - | chr4_4:24910372-24910391 | Msa0675690:intron | 40.0% | |
| TCTCTAAATGCTGAGTACTC+TGG | + | chr4_4:24910773-24910792 | None:intergenic | 40.0% | |
| AGCTGGCATAGAAATCAAGA+TGG | - | chr4_4:24910848-24910867 | Msa0675690:CDS | 40.0% | |
| CTGTTAAGAGTGATTCCCTT+TGG | - | chr4_4:24910876-24910895 | Msa0675690:CDS | 40.0% | |
| ! | TGAGGTTTGGAATCATCAAC+CGG | + | chr4_4:24910923-24910942 | None:intergenic | 40.0% |
| !! | GTTGATGATTCCAAACCTCA+TGG | - | chr4_4:24910923-24910942 | Msa0675690:five_prime_UTR | 40.0% |
| ATTCTTCAATGGGAACCATG+AGG | + | chr4_4:24910941-24910960 | None:intergenic | 40.0% | |
| !! | TGTTGAGGAGCATTATAGCC+AGG | + | chr4_4:24907281-24907300 | None:intergenic | 45.0% |
| TGGCTATAATGCTCCTCAAC+AGG | - | chr4_4:24907280-24907299 | Msa0675690:intron | 45.0% | |
| CTGCGATGAAAATACACTCG+TGG | - | chr4_4:24907524-24907543 | Msa0675690:intron | 45.0% | |
| GGAAAGCAGTGATCGTATCA+TGG | - | chr4_4:24907867-24907886 | Msa0675690:CDS | 45.0% | |
| ! | GGAACACAACAAGGCAGTTT+TGG | - | chr4_4:24908164-24908183 | Msa0675690:intron | 45.0% |
| CCAAATGTGTATGGCACATC+AGG | + | chr4_4:24908214-24908233 | None:intergenic | 45.0% | |
| CCTGATGTGCCATACACATT+TGG | - | chr4_4:24908211-24908230 | Msa0675690:intron | 45.0% | |
| GTTCCAGTGAAGCACAGATA+CGG | - | chr4_4:24908316-24908335 | Msa0675690:intron | 45.0% | |
| TTTCCGTATCTGTGCTTCAC+TGG | + | chr4_4:24908322-24908341 | None:intergenic | 45.0% | |
| GTGAAGCACAGATACGGAAA+AGG | - | chr4_4:24908322-24908341 | Msa0675690:intron | 45.0% | |
| !! | TATATGTGTCGGTGTCGTGT+TGG | - | chr4_4:24908419-24908438 | Msa0675690:intron | 45.0% |
| !!! | GCATCCTTTTCAGGTGATCT+TGG | - | chr4_4:24908948-24908967 | Msa0675690:CDS | 45.0% |
| ATGTTAGGTGGGATACTTGG+GGG | - | chr4_4:24909087-24909106 | Msa0675690:intron | 45.0% | |
| !! | GGAGTGTTGCTTATCAACCT+TGG | - | chr4_4:24909123-24909142 | Msa0675690:intron | 45.0% |
| ! | CAACCTTGGATATGGACTGT+AGG | - | chr4_4:24909137-24909156 | Msa0675690:intron | 45.0% |
| CCGGAGCAAAATCAAGTTCA+TGG | + | chr4_4:24909166-24909185 | None:intergenic | 45.0% | |
| !! | GTATGGTATCGGTGCGAAAA+AGG | + | chr4_4:24909365-24909384 | None:intergenic | 45.0% |
| TGTTCAAGCCACGCATATTG+TGG | + | chr4_4:24909967-24909986 | None:intergenic | 45.0% | |
| AAGAGCTACCGAGAGTTAAC+AGG | - | chr4_4:24909986-24910005 | Msa0675690:intron | 45.0% | |
| GCATTTAGAGAAGCCAGCTT+TGG | - | chr4_4:24910782-24910801 | Msa0675690:CDS | 45.0% | |
| GGACACATGCTTACTATAGC+TGG | - | chr4_4:24910831-24910850 | Msa0675690:CDS | 45.0% | |
| ! | GAGGTTTGGAATCATCAACC+GGG | + | chr4_4:24910922-24910941 | None:intergenic | 45.0% |
| TCAATGGGAACCATGAGGTT+TGG | + | chr4_4:24910936-24910955 | None:intergenic | 45.0% | |
| !! | AAAATTCTAATAAAAATTTA+GGG | - | chr4_4:24907585-24907604 | Msa0675690:intron | 5.0% |
| !! | TTATTGAATATTTATATTAT+TGG | + | chr4_4:24908582-24908601 | None:intergenic | 5.0% |
| !! | AATAAAATAAAAATTTAACA+TGG | - | chr4_4:24909806-24909825 | Msa0675690:CDS | 5.0% |
| !! | TGAGGAGCATTATAGCCAGG+AGG | + | chr4_4:24907278-24907297 | None:intergenic | 50.0% |
| GATCGTATCATGGGTGACTG+AGG | - | chr4_4:24907877-24907896 | Msa0675690:CDS | 50.0% | |
| ACATCAGGACCAATTGCAGG+AGG | + | chr4_4:24908199-24908218 | None:intergenic | 50.0% | |
| !! | ACGACACAGACACTGACTTG+CGG | - | chr4_4:24908354-24908373 | Msa0675690:intron | 50.0% |
| ! | TCCTCGGATTAGACGTGTCT+CGG | + | chr4_4:24908460-24908479 | None:intergenic | 50.0% |
| GACTCCATCCACCCAATTGA+AGG | + | chr4_4:24908531-24908550 | None:intergenic | 50.0% | |
| CTGCCCAAGATCACCTGAAA+AGG | + | chr4_4:24908955-24908974 | None:intergenic | 50.0% | |
| CGGTGCGAAAAAGGCTTGAA+TGG | + | chr4_4:24909356-24909375 | None:intergenic | 50.0% | |
| GGAGATGGAGGGAATATCGA+AGG | - | chr4_4:24910383-24910402 | Msa0675690:intron | 50.0% | |
| AATGCTGAGTACTCTGGCTG+TGG | + | chr4_4:24910767-24910786 | None:intergenic | 50.0% | |
| TGGGTGACTGAGGATGAACC+CGG | - | chr4_4:24907887-24907906 | Msa0675690:CDS | 55.0% | |
| GGCACATCAGGACCAATTGC+AGG | + | chr4_4:24908202-24908221 | None:intergenic | 55.0% | |
| GTCAGTGTCTGTGTCGTGTC+TGG | + | chr4_4:24908351-24908370 | None:intergenic | 55.0% | |
| ACCGAGACACGTCTAATCCG+AGG | - | chr4_4:24908456-24908475 | Msa0675690:intron | 55.0% | |
| ! | CTGAAAGCACGGACACTCCT+CGG | + | chr4_4:24908476-24908495 | None:intergenic | 55.0% |
| TTAGGTGGGATACTTGGGGG+AGG | - | chr4_4:24909090-24909109 | Msa0675690:intron | 55.0% | |
| GGGTGACTGAGGATGAACCC+GGG | - | chr4_4:24907888-24907907 | Msa0675690:CDS | 60.0% | |
| GACTGAGGATGAACCCGGGT+CGG | - | chr4_4:24907892-24907911 | Msa0675690:CDS | 60.0% | |
| TAACGCACTGCATCCGACCC+GGG | + | chr4_4:24907908-24907927 | None:intergenic | 60.0% | |
| GTAACGCACTGCATCCGACC+CGG | + | chr4_4:24907909-24907928 | None:intergenic | 60.0% | |
| GGTCGGATGCAGTGCGTTAC+TGG | - | chr4_4:24907909-24907928 | Msa0675690:CDS | 60.0% | |
| CTTGGGGGAGGTTTGCAGAG+AGG | - | chr4_4:24909102-24909121 | Msa0675690:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 24906955 | 24911074 | 24906955 | ID=Msa0675690;Name=Msa0675690 |
| chr4_4 | mRNA | 24906955 | 24911074 | 24906955 | ID=Msa0675690-mRNA-1;Parent=Msa0675690;Name=Msa0675690-mRNA-1;_AED=0.15;_eAED=0.15;_QI=122|1|1|1|0.87|0.77|9|119|470 |
| chr4_4 | exon | 24906955 | 24907275 | 24906955 | ID=Msa0675690-mRNA-1:exon:6829;Parent=Msa0675690-mRNA-1 |
| chr4_4 | exon | 24907612 | 24907733 | 24907612 | ID=Msa0675690-mRNA-1:exon:6828;Parent=Msa0675690-mRNA-1 |
| chr4_4 | exon | 24907856 | 24908076 | 24907856 | ID=Msa0675690-mRNA-1:exon:6827;Parent=Msa0675690-mRNA-1 |
| chr4_4 | exon | 24908550 | 24908688 | 24908550 | ID=Msa0675690-mRNA-1:exon:6826;Parent=Msa0675690-mRNA-1 |
| chr4_4 | exon | 24908839 | 24909068 | 24908839 | ID=Msa0675690-mRNA-1:exon:6825;Parent=Msa0675690-mRNA-1 |
| chr4_4 | exon | 24909788 | 24909899 | 24909788 | ID=Msa0675690-mRNA-1:exon:6824;Parent=Msa0675690-mRNA-1 |
| chr4_4 | exon | 24909990 | 24910190 | 24909990 | ID=Msa0675690-mRNA-1:exon:6823;Parent=Msa0675690-mRNA-1 |
| chr4_4 | exon | 24910728 | 24910992 | 24910728 | ID=Msa0675690-mRNA-1:exon:6822;Parent=Msa0675690-mRNA-1 |
| chr4_4 | exon | 24911032 | 24911074 | 24911032 | ID=Msa0675690-mRNA-1:exon:6821;Parent=Msa0675690-mRNA-1 |
| chr4_4 | five_prime_UTR | 24911032 | 24911074 | 24911032 | ID=Msa0675690-mRNA-1:five_prime_utr;Parent=Msa0675690-mRNA-1 |
| chr4_4 | five_prime_UTR | 24910914 | 24910992 | 24910914 | ID=Msa0675690-mRNA-1:five_prime_utr;Parent=Msa0675690-mRNA-1 |
| chr4_4 | CDS | 24910728 | 24910913 | 24910728 | ID=Msa0675690-mRNA-1:cds;Parent=Msa0675690-mRNA-1 |
| chr4_4 | CDS | 24909990 | 24910190 | 24909990 | ID=Msa0675690-mRNA-1:cds;Parent=Msa0675690-mRNA-1 |
| chr4_4 | CDS | 24909788 | 24909899 | 24909788 | ID=Msa0675690-mRNA-1:cds;Parent=Msa0675690-mRNA-1 |
| chr4_4 | CDS | 24908839 | 24909068 | 24908839 | ID=Msa0675690-mRNA-1:cds;Parent=Msa0675690-mRNA-1 |
| chr4_4 | CDS | 24908550 | 24908688 | 24908550 | ID=Msa0675690-mRNA-1:cds;Parent=Msa0675690-mRNA-1 |
| chr4_4 | CDS | 24907856 | 24908076 | 24907856 | ID=Msa0675690-mRNA-1:cds;Parent=Msa0675690-mRNA-1 |
| chr4_4 | CDS | 24907612 | 24907733 | 24907612 | ID=Msa0675690-mRNA-1:cds;Parent=Msa0675690-mRNA-1 |
| chr4_4 | CDS | 24907074 | 24907275 | 24907074 | ID=Msa0675690-mRNA-1:cds;Parent=Msa0675690-mRNA-1 |
| chr4_4 | three_prime_UTR | 24906955 | 24907073 | 24906955 | ID=Msa0675690-mRNA-1:three_prime_utr;Parent=Msa0675690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
