AlfalfaGEDB | Msa0541640

M. sativa cultivar zhongmu-4 / Msa0541640

KEGG: -
GO: GO:0000035 GO:0000036 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0032501 GO:0032502 GO:0032787 GO:0033218 GO:0036094 GO:0042335 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044620 GO:0045087 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0048856 GO:0050896 GO:0051192 GO:0051704 GO:0051707 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0098542 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509
PFAM: PF00550.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0541640	XP_003630571.1	97.143	140	3	1	1	140	1	139	1.72e-90	269

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0541640	sp\|P93092\|ACP1_CASGL	52.857	140	59	4	1	139	1	134	6.66e-39	130

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0541640	G7LIR8	97.143	140	3	1	1	140	1	139	8.24e-91	269

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0541640	Msa0570770	0.811904	5.543957e-51	-8.615850e-47
Msa0541640	Msa0572350	0.817616	3.006866e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0541640	MtrunA17_Chr8g0385881	97.143	140	3	1	1	140	1	139	1.59e-94	269
Msa0541640	MtrunA17_Chr2g0286471	46.853	143	67	4	1	139	1	138	3.99e-37	123
Msa0541640	MtrunA17_Chr2g0286481	51.220	123	53	4	22	139	18	138	6.97e-34	115
Msa0541640	MtrunA17_Chr1g0191251	50.000	80	35	2	57	134	10	86	5.69e-18	73.6
Msa0541640	MtrunA17_Chr7g0249801	45.833	72	37	2	62	132	42	112	1.56e-11	57.8
Msa0541640	MtrunA17_Chr7g0249561	41.772	79	44	2	62	139	53	130	4.58e-11	56.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0541640	AT4G25050.1	55.000	140	53	4	1	139	1	131	5.73e-39	128
Msa0541640	AT4G25050.2	50.658	152	53	5	1	139	1	143	2.28e-35	120
Msa0541640	AT3G05020.1	49.306	144	60	5	1	139	1	136	4.42e-34	116
Msa0541640	AT5G27200.1	63.529	85	29	1	55	139	55	137	2.17e-31	109
Msa0541640	AT1G54630.1	41.333	150	58	5	1	139	4	134	7.41e-28	100
Msa0541640	AT1G54580.1	57.647	85	34	1	55	139	52	134	1.33e-26	97.4
Msa0541640	AT1G65290.1	41.772	79	44	2	62	139	49	126	2.06e-11	57.8
Msa0541640	AT1G54630.2	53.448	58	25	1	55	112	52	107	2.99e-11	57.0

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Find 54 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGTAAGAGGGAGGG+AGG	0.502298	4_1:-25626850	Msa0541640:three_prime_UTR
AAAGAAAGATTAAGCTTAAG+AGG	0.355256	4_1:-25627202	Msa0541640:exon
AACCGCATTAGGCACAAGGA+TGG	0.589368	4_1:+25626924	None:intergenic
AAGAGAGGTGGCTGAAAGAG+AGG	0.547136	4_1:+25628682	None:intergenic
AAGTATAGAATATGGGTACA+TGG	0.592357	4_1:-25626884	Msa0541640:three_prime_UTR
AATACATTGTGAACTGAGTT+AGG	0.370219	4_1:-25627154	Msa0541640:three_prime_UTR
AATACGCATAAGCACAAATA+AGG	0.337832	4_1:+25627105	None:intergenic
AATAGTAAGAGATATGGATT+GGG	0.536153	4_1:+25628735	None:intergenic
AGAAAGTGAGCAAAATTGTG+AGG	0.675370	4_1:-25627684	Msa0541640:CDS
AGAATTTAACCTTAATATTG+AGG	0.419128	4_1:-25627289	Msa0541640:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAATAGTAAGAGATATGGAT+TGG	+	chr4_1:25626943-25626962	None:intergenic	30.0%
CTTGTAGAGAAATTGAAAGA+GGG	+	chr4_1:25627027-25627046	None:intergenic	30.0%
GTAAGTATATGCATAAAGAG+AGG	+	chr4_1:25627077-25627096	None:intergenic	30.0%
CCAACACCTAAATTATCAAT+TGG	+	chr4_1:25627398-25627417	None:intergenic	30.0%
AAAACCAATAATGTTCATGC+AGG	+	chr4_1:25628224-25628243	None:intergenic	30.0%
TGATTCTTAATTAATGTGGC+AGG	-	chr4_1:25628337-25628356	Msa0541640:intron	30.0%
AATACATTGTGAACTGAGTT+AGG	-	chr4_1:25628520-25628539	Msa0541640:intron	30.0%
AATACGCATAAGCACAAATA+AGG	+	chr4_1:25628572-25628591	None:intergenic	30.0%
GCAATTTAACCAAGTTACAA+TGG	+	chr4_1:25628627-25628646	None:intergenic	30.0%
AAGTATAGAATATGGGTACA+TGG	-	chr4_1:25628790-25628809	Msa0541640:five_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	25626824	25628872	25626824	ID=Msa0541640;Name=Msa0541640
chr4_1	mRNA	25626824	25628872	25626824	ID=Msa0541640-mRNA-1;Parent=Msa0541640;Name=Msa0541640-mRNA-1;_AED=0.07;_eAED=0.07;_QI=164\|1\|1\|1\|0.66\|0.75\|4\|388\|140
chr4_1	exon	25626824	25627337	25626824	ID=Msa0541640-mRNA-1:exon:6911;Parent=Msa0541640-mRNA-1
chr4_1	exon	25627603	25627731	25627603	ID=Msa0541640-mRNA-1:exon:6910;Parent=Msa0541640-mRNA-1
chr4_1	exon	25627814	25627912	25627814	ID=Msa0541640-mRNA-1:exon:6909;Parent=Msa0541640-mRNA-1
chr4_1	exon	25628640	25628872	25628640	ID=Msa0541640-mRNA-1:exon:6908;Parent=Msa0541640-mRNA-1
chr4_1	five_prime_UTR	25628709	25628872	25628709	ID=Msa0541640-mRNA-1:five_prime_utr;Parent=Msa0541640-mRNA-1
chr4_1	CDS	25628640	25628708	25628640	ID=Msa0541640-mRNA-1:cds;Parent=Msa0541640-mRNA-1
chr4_1	CDS	25627814	25627912	25627814	ID=Msa0541640-mRNA-1:cds;Parent=Msa0541640-mRNA-1
chr4_1	CDS	25627603	25627731	25627603	ID=Msa0541640-mRNA-1:cds;Parent=Msa0541640-mRNA-1
chr4_1	CDS	25627212	25627337	25627212	ID=Msa0541640-mRNA-1:cds;Parent=Msa0541640-mRNA-1
chr4_1	three_prime_UTR	25626824	25627211	25626824	ID=Msa0541640-mRNA-1:three_prime_utr;Parent=Msa0541640-mRNA-1

Gene Sequence

>Msa0541640

ATGGCCTCTCTTTCAGCCACCTCTCTTACCTTTCAACCCTCTTTCAATTTCTCTACAAGGACTAACCAGGTTTCTTTCAGAACTTCAAGTTTTGGTGCAATTTCTGTGGGATGTACAAAGAGAAGTTTTCCTTCTTTGAGATCTTCTCATCGTTTCCGCATTTGTGCAATTCAGGCACAACCTGAGACGGTGGAGAAAGTGAGCAAAATTGTGAGGAAACAACTTGCTTTGACTCCTGAAACCAAGCTTACCCCAGAAACCAAGTTTTCAGAACTTGGTGCTGATTCTCTTGACACTGTGGAAATAGTGATGGGTTTAGAGGAAGAATTTAACCTTAATATTGAGGATGATAATGCTGAAGACATCACAACCATTCAACAAGCAGCTGATTTGATAGAGAAACTGATTCAAAAGAAAGATTAA

Protein sequence

>Msa0541640

MASLSATSLTFQPSFNFSTRTNQVSFRTSSFGAISVGCTKRSFPSLRSSHRFRICAIQAQPETVEKVSKIVRKQLALTPETKLTPETKFSELGADSLDTVEIVMGLEEEFNLNIEDDNAEDITTIQQAADLIEKLIQKKD*