Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0572350 | XP_013447146.1 | 97.849 | 372 | 5 | 2 | 6 | 374 | 1 | 372 | 0.0 | 739 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0572350 | A0A072TWB5 | 97.849 | 372 | 5 | 2 | 6 | 374 | 1 | 372 | 0.0 | 739 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030400 | Msa0572350 | 0.808506 | 2.994855e-50 | -8.615850e-47 |
| Msa0060350 | Msa0572350 | 0.814488 | 1.501621e-51 | -8.615850e-47 |
| Msa0094700 | Msa0572350 | 0.816417 | 5.588988e-52 | -8.615850e-47 |
| Msa0120980 | Msa0572350 | 0.805007 | 1.643428e-49 | -8.615850e-47 |
| Msa0130760 | Msa0572350 | 0.809045 | 2.297189e-50 | -8.615850e-47 |
| Msa0139050 | Msa0572350 | 0.810624 | 1.050656e-50 | -8.615850e-47 |
| Msa0141550 | Msa0572350 | 0.805775 | 1.134009e-49 | -8.615850e-47 |
| Msa0141670 | Msa0572350 | 0.816971 | 4.200098e-52 | -8.615850e-47 |
| Msa0143970 | Msa0572350 | 0.814968 | 1.175907e-51 | -8.615850e-47 |
| Msa0143980 | Msa0572350 | 0.814985 | 1.165806e-51 | -8.615850e-47 |
| Msa0162070 | Msa0572350 | 0.802133 | 6.483289e-49 | -8.615850e-47 |
| Msa0173760 | Msa0572350 | 0.811836 | 5.736830e-51 | -8.615850e-47 |
| Msa0173850 | Msa0572350 | 0.825695 | 4.073957e-54 | -8.615850e-47 |
| Msa0181290 | Msa0572350 | 0.805646 | 1.207368e-49 | -8.615850e-47 |
| Msa0185550 | Msa0572350 | 0.826087 | 3.287464e-54 | -8.615850e-47 |
| Msa0206940 | Msa0572350 | 0.809901 | 1.504364e-50 | -8.615850e-47 |
| Msa0207180 | Msa0572350 | 0.801414 | 9.107669e-49 | -8.615850e-47 |
| Msa0213080 | Msa0572350 | 0.830235 | 3.292029e-55 | -8.615850e-47 |
| Msa0217470 | Msa0572350 | 0.836888 | 7.185797e-57 | -8.615850e-47 |
| Msa0371610 | Msa0572350 | 0.810209 | 1.291818e-50 | -8.615850e-47 |
| Msa0380310 | Msa0572350 | 0.800724 | 1.260258e-48 | -8.615850e-47 |
| Msa0380420 | Msa0572350 | 0.801828 | 7.489419e-49 | -8.615850e-47 |
| Msa0423600 | Msa0572350 | 0.807554 | 4.775465e-50 | -8.615850e-47 |
| Msa0450460 | Msa0572350 | 0.803774 | 2.969759e-49 | -8.615850e-47 |
| Msa0470650 | Msa0572350 | 0.802441 | 5.603350e-49 | -8.615850e-47 |
| Msa0471890 | Msa0572350 | 0.803814 | 2.912583e-49 | -8.615850e-47 |
| Msa0475740 | Msa0572350 | 0.804149 | 2.481861e-49 | -8.615850e-47 |
| Msa0476150 | Msa0572350 | 0.820433 | 6.878193e-53 | -8.615850e-47 |
| Msa0476180 | Msa0572350 | 0.833323 | 5.696886e-56 | -8.615850e-47 |
| Msa0285740 | Msa0572350 | 0.805915 | 1.059852e-49 | -8.615850e-47 |
| Msa0296610 | Msa0572350 | 0.860628 | 1.808889e-63 | -8.615850e-47 |
| Msa0312780 | Msa0572350 | 0.833812 | 4.301357e-56 | -8.615850e-47 |
| Msa0334980 | Msa0572350 | 0.810642 | 1.041563e-50 | -8.615850e-47 |
| Msa0526130 | Msa0572350 | 0.852044 | 5.974012e-61 | -8.615850e-47 |
| Msa0528740 | Msa0572350 | 0.844917 | 5.617203e-59 | -8.615850e-47 |
| Msa0541640 | Msa0572350 | 0.817616 | 3.006866e-52 | -8.615850e-47 |
| Msa0555980 | Msa0572350 | 0.818153 | 2.273642e-52 | -8.615850e-47 |
| Msa0568810 | Msa0572350 | 0.801629 | 8.226857e-49 | -8.615850e-47 |
| Msa0572350 | Msa0575250 | 0.806236 | 9.072116e-50 | -8.615850e-47 |
| Msa0572350 | Msa0575460 | 0.844603 | 6.826313e-59 | -8.615850e-47 |
| Msa0572350 | Msa0604700 | 0.802916 | 4.470962e-49 | -8.615850e-47 |
| Msa0572350 | Msa0607440 | 0.823015 | 1.739059e-53 | -8.615850e-47 |
| Msa0572350 | Msa0619330 | 0.807287 | 5.440394e-50 | -8.615850e-47 |
| Msa0572350 | Msa0645780 | 0.828159 | 1.049440e-54 | -8.615850e-47 |
| Msa0572350 | Msa0647000 | 0.802351 | 5.846936e-49 | -8.615850e-47 |
| Msa0572350 | Msa0650360 | 0.835686 | 1.452315e-56 | -8.615850e-47 |
| Msa0572350 | Msa0657820 | 0.817904 | 2.588373e-52 | -8.615850e-47 |
| Msa0572350 | Msa0690350 | 0.800417 | 1.455390e-48 | -8.615850e-47 |
| Msa0572350 | Msa0692910 | 0.810908 | 9.123889e-51 | -8.615850e-47 |
| Msa0572350 | Msa0707780 | 0.803762 | 2.986190e-49 | -8.615850e-47 |
| Msa0572350 | Msa0709480 | 0.803792 | 2.943504e-49 | -8.615850e-47 |
| Msa0572350 | Msa0730180 | 0.821089 | 4.858428e-53 | -8.615850e-47 |
| Msa0572350 | Msa0744450 | 0.806321 | 8.706724e-50 | -8.615850e-47 |
| Msa0572350 | Msa0756480 | 0.847043 | 1.483990e-59 | -8.615850e-47 |
| Msa0572350 | Msa0770430 | 0.813619 | 2.335093e-51 | -8.615850e-47 |
| Msa0572350 | Msa0772150 | 0.824521 | 7.718423e-54 | -8.615850e-47 |
| Msa0572350 | Msa0800130 | 0.832555 | 8.843798e-56 | -8.615850e-47 |
| Msa0572350 | Msa0802500 | 0.825470 | 4.607366e-54 | -8.615850e-47 |
| Msa0572350 | Msa0807950 | 0.807301 | 5.404926e-50 | -8.615850e-47 |
| Msa0572350 | Msa0808420 | 0.800998 | 1.107618e-48 | -8.615850e-47 |
| Msa0572350 | Msa0830120 | 0.801601 | 8.338662e-49 | -8.615850e-47 |
| Msa0572350 | Msa0830450 | 0.801890 | 7.271811e-49 | -8.615850e-47 |
| Msa0572350 | Msa0835510 | 0.834766 | 2.479085e-56 | -8.615850e-47 |
| Msa0572350 | Msa0840630 | 0.814573 | 1.438571e-51 | -8.615850e-47 |
| Msa0572350 | Msa0864150 | 0.802063 | 6.701898e-49 | -8.615850e-47 |
| Msa0572350 | Msa0881050 | 0.807962 | 3.911725e-50 | -8.615850e-47 |
| Msa0572350 | Msa0931730 | 0.804135 | 2.498500e-49 | -8.615850e-47 |
| Msa0572350 | Msa0970050 | 0.801728 | 7.852010e-49 | -8.615850e-47 |
| Msa0572350 | Msa0985430 | 0.808996 | 2.353369e-50 | -8.615850e-47 |
| Msa0572350 | Msa1000470 | 0.849217 | 3.726666e-60 | -8.615850e-47 |
| Msa0572350 | Msa1011210 | 0.819949 | 8.875109e-53 | -8.615850e-47 |
| Msa0572350 | Msa1029320 | 0.804388 | 2.212345e-49 | -8.615850e-47 |
| Msa0572350 | Msa1029430 | 0.801886 | 7.288308e-49 | -8.615850e-47 |
| Msa0572350 | Msa1038820 | 0.809514 | 1.822114e-50 | -8.615850e-47 |
| Msa0572350 | Msa1044040 | 0.818914 | 1.528527e-52 | -8.615850e-47 |
| Msa0572350 | Msa1080620 | 0.814028 | 1.897592e-51 | -8.615850e-47 |
| Msa0572350 | Msa1080690 | 0.802769 | 4.794671e-49 | -8.615850e-47 |
| Msa0572350 | Msa1081600 | 0.825716 | 4.027972e-54 | -8.615850e-47 |
| Msa0572350 | Msa1081700 | 0.836340 | 9.908050e-57 | -8.615850e-47 |
| Msa0572350 | Msa1081850 | 0.821433 | 4.047790e-53 | -8.615850e-47 |
| Msa0572350 | Msa1084490 | 0.814768 | 1.302348e-51 | -8.615850e-47 |
| Msa0572350 | Msa1093390 | 0.806533 | 7.856780e-50 | -8.615850e-47 |
| Msa0572350 | Msa1106560 | 0.803365 | 3.610297e-49 | -8.615850e-47 |
| Msa0572350 | Msa1116010 | 0.815615 | 8.442823e-52 | -8.615850e-47 |
| Msa0572350 | Msa1125780 | 0.803627 | 3.184989e-49 | -8.615850e-47 |
| Msa0572350 | Msa1125950 | 0.801647 | 8.156524e-49 | -8.615850e-47 |
| Msa0572350 | Msa1145370 | 0.801721 | 7.876145e-49 | -8.615850e-47 |
| Msa0572350 | Msa1151120 | 0.802631 | 5.118618e-49 | -8.615850e-47 |
| Msa0572350 | Msa1161160 | 0.804552 | 2.044963e-49 | -8.615850e-47 |
| Msa0572350 | Msa1161520 | 0.804894 | 1.734824e-49 | -8.615850e-47 |
| Msa0572350 | Msa1161760 | 0.814403 | 1.568631e-51 | -8.615850e-47 |
| Msa0572350 | Msa1166370 | 0.825911 | 3.621097e-54 | -8.615850e-47 |
| Msa0572350 | Msa1208250 | 0.801232 | 9.923192e-49 | -8.615850e-47 |
| Msa0572350 | Msa1212740 | 0.802044 | 6.762245e-49 | -8.615850e-47 |
| Msa0572350 | Msa1214900 | 0.823963 | 1.043752e-53 | -8.615850e-47 |
| Msa0572350 | Msa1222580 | 0.837797 | 4.204956e-57 | -8.615850e-47 |
| Msa0572350 | Msa1229050 | 0.805865 | 1.086162e-49 | -8.615850e-47 |
| Msa0572350 | Msa1233770 | 0.814311 | 1.643140e-51 | -8.615850e-47 |
| Msa0572350 | Msa1260760 | 0.836819 | 7.481836e-57 | -8.615850e-47 |
| Msa0572350 | Msa1268370 | 0.833479 | 5.210192e-56 | -8.615850e-47 |
| Msa0572350 | Msa1271490 | 0.805694 | 1.179353e-49 | -8.615850e-47 |
| Msa0572350 | Msa1276080 | 0.811469 | 6.891588e-51 | -8.615850e-47 |
| Msa0572350 | Msa1302150 | 0.803648 | 3.154050e-49 | -8.615850e-47 |
| Msa0572350 | Msa1326000 | 0.830056 | 3.639876e-55 | -8.615850e-47 |
| Msa0572350 | Msa1357380 | 0.806208 | 9.198914e-50 | -8.615850e-47 |
| Msa0572350 | Msa1366700 | 0.817358 | 3.437504e-52 | -8.615850e-47 |
| Msa0572350 | Msa1369900 | 0.811477 | 6.864974e-51 | -8.615850e-47 |
| Msa0572350 | Msa1373950 | 0.803830 | 2.890671e-49 | -8.615850e-47 |
| Msa0572350 | Msa1375630 | 0.809061 | 2.279216e-50 | -8.615850e-47 |
| Msa0572350 | Msa1388850 | 0.804362 | 2.240306e-49 | -8.615850e-47 |
| Msa0572350 | Msa1397110 | 0.816716 | 4.790727e-52 | -8.615850e-47 |
| Msa0572350 | Msa1403900 | 0.818900 | 1.539847e-52 | -8.615850e-47 |
| Msa0572350 | Msa1404370 | 0.802053 | 6.732636e-49 | -8.615850e-47 |
| Msa0572350 | Msa1407710 | 0.812803 | 3.527200e-51 | -8.615850e-47 |
| Msa0572350 | Msa1412520 | 0.810405 | 1.171958e-50 | -8.615850e-47 |
| Msa0572350 | Msa1430760 | 0.826889 | 2.117443e-54 | -8.615850e-47 |
| Msa0572350 | Msa1450420 | 0.800631 | 1.316120e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0572350 | MtrunA17_Chr8g0387731 | 97.849 | 372 | 5 | 2 | 6 | 374 | 1 | 372 | 0.0 | 739 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 88 sgRNAs with CRISPR-Local
Find 277 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTTGATAATTTCATTAT+TGG | 0.129275 | 4_1:+75253324 | None:intergenic |
| ATCCCAATACATTGGGAATT+TGG | 0.184701 | 4_1:+75255298 | None:intergenic |
| TTATGCAGCTACTTAATTAA+AGG | 0.212532 | 4_1:-75254908 | Msa0572350:intron |
| TACGAAATGGGTTTCTTAAT+AGG | 0.229802 | 4_1:-75255455 | Msa0572350:CDS |
| ATTTCACGTTCCTGTGTCTT+TGG | 0.251505 | 4_1:+75255542 | None:intergenic |
| GGCCATTGATCAACTTCTTT+GGG | 0.265612 | 4_1:+75253497 | None:intergenic |
| TTATCCGTTGGGAGAATCTT+TGG | 0.281279 | 4_1:+75255432 | None:intergenic |
| TGGCCATTGATCAACTTCTT+TGG | 0.285992 | 4_1:+75253496 | None:intergenic |
| CAAATTACCTGTCATATAGA+TGG | 0.304147 | 4_1:+75253701 | None:intergenic |
| TCTTGTTGTTGGTGAATCTA+TGG | 0.342990 | 4_1:-75255061 | Msa0572350:CDS |
| AATATTTAGTTTAACTCATA+AGG | 0.345989 | 4_1:-75253394 | Msa0572350:three_prime_UTR |
| ATGCAAAGATTCATACGAAA+TGG | 0.346312 | 4_1:-75255468 | Msa0572350:CDS |
| GATTCGTTCATCAGAAATTT+CGG | 0.351984 | 4_1:-75254499 | Msa0572350:CDS |
| TACGAGTACTTATTTCAATT+AGG | 0.353189 | 4_1:+75254460 | None:intergenic |
| GTTCAATCAGCAGGCAGAAA+AGG | 0.356093 | 4_1:-75253797 | Msa0572350:CDS |
| AAAGACACAGGAACGTGAAA+TGG | 0.364616 | 4_1:-75255540 | Msa0572350:exon |
| AAACCAAATTCCCAATGTAT+TGG | 0.366578 | 4_1:-75255301 | Msa0572350:CDS |
| TTTGTTGCTTATACATATGC+TGG | 0.369186 | 4_1:-75254863 | Msa0572350:CDS |
| ATGCACCGCTGTTATCGATT+TGG | 0.376325 | 4_1:-75253590 | Msa0572350:CDS |
| AACCAAATTCCCAATGTATT+GGG | 0.377538 | 4_1:-75255300 | Msa0572350:CDS |
| TGTTCTACAGTTCTTGTTGT+TGG | 0.381983 | 4_1:-75255072 | Msa0572350:CDS |
| CGAGGCATTCTTGAAGCTAC+TGG | 0.388413 | 4_1:-75254631 | Msa0572350:CDS |
| GAACTCTTGGGGACTGCAGC+TGG | 0.389083 | 4_1:-75255275 | Msa0572350:CDS |
| GAACGTGAAATGGGAAGCTT+TGG | 0.397755 | 4_1:-75255530 | Msa0572350:exon |
| CGAATTTCAATTCATGAGGT+TGG | 0.398814 | 4_1:-75254405 | Msa0572350:CDS |
| ATTAAAGGAATATTGCCAAA+TGG | 0.406702 | 4_1:-75254893 | Msa0572350:CDS |
| GCAACAAAGAATAGCCCATT+TGG | 0.413622 | 4_1:+75254878 | None:intergenic |
| TTGGGGACTGCAGCTGGAAG+TGG | 0.425422 | 4_1:-75255269 | Msa0572350:CDS |
| AATGTATTGGGATGAACTCT+TGG | 0.427691 | 4_1:-75255288 | Msa0572350:CDS |
| TTAAAGGAATATTGCCAAAT+GGG | 0.435577 | 4_1:-75254892 | Msa0572350:CDS |
| TGCATTTAATAGCAATGGAT+TGG | 0.437443 | 4_1:-75254819 | Msa0572350:intron |
| GAAATTGTGGCTGGCGGGAT+TGG | 0.439299 | 4_1:-75254670 | Msa0572350:CDS |
| GCATTTGCATTTAATAGCAA+TGG | 0.449501 | 4_1:-75254824 | Msa0572350:CDS |
| TCGTCACCTACATATTAATC+AGG | 0.453944 | 4_1:-75254352 | Msa0572350:intron |
| TTGTTGCTTATACATATGCT+GGG | 0.459480 | 4_1:-75254862 | Msa0572350:CDS |
| ATGTATTGGGATGAACTCTT+GGG | 0.461868 | 4_1:-75255287 | Msa0572350:CDS |
| TGCAAAGATTCATACGAAAT+GGG | 0.462436 | 4_1:-75255467 | Msa0572350:CDS |
| TACATGTTTGCATGGAAGAA+AGG | 0.465025 | 4_1:+75254375 | None:intergenic |
| TTCAATCAGCAGGCAGAAAA+GGG | 0.469264 | 4_1:-75253796 | Msa0572350:CDS |
| ATTATAAGTGATTATGATGA+TGG | 0.469442 | 4_1:+75253476 | None:intergenic |
| AAACTTGAGATGTTTGAAGT+TGG | 0.476023 | 4_1:-75255494 | Msa0572350:CDS |
| GGAGTTTGAGTTTGAGCAAA+GGG | 0.476612 | 4_1:+75255365 | None:intergenic |
| TTAAATGCAAATGCAGAGCT+TGG | 0.481636 | 4_1:+75254833 | None:intergenic |
| TTTGTGTTCATTGTAGAACT+TGG | 0.483673 | 4_1:-75255565 | Msa0572350:five_prime_UTR |
| TTGAGAAGTGATTCTGATTG+AGG | 0.492470 | 4_1:+75255344 | None:intergenic |
| CAGTATCTAAGCACTATAAG+AGG | 0.493134 | 4_1:-75255605 | Msa0572350:five_prime_UTR |
| AAGACACAGGAACGTGAAAT+GGG | 0.493419 | 4_1:-75255539 | Msa0572350:exon |
| GCCACAATTTCATCTTCAGC+TGG | 0.493965 | 4_1:+75254682 | None:intergenic |
| AGAGTTCATCCCAATACATT+GGG | 0.499985 | 4_1:+75255291 | None:intergenic |
| TTTACTTATTAATTTCAAGA+AGG | 0.503681 | 4_1:-75255151 | Msa0572350:CDS |
| GATGCAAATGTTGTCCTTGT+TGG | 0.508642 | 4_1:-75255018 | Msa0572350:CDS |
| ATCCTCATTGTGTGCTGCAA+TGG | 0.509679 | 4_1:+75255038 | None:intergenic |
| TACCAATAATGAAATTATCA+AGG | 0.522813 | 4_1:-75253326 | None:intergenic |
| CTTAACCAAAACAACAAAAG+AGG | 0.527509 | 4_1:-75253766 | Msa0572350:CDS |
| AAATTACCTGTCATATAGAT+GGG | 0.529936 | 4_1:+75253702 | None:intergenic |
| AAGATGAGAGTTCAATCAGC+AGG | 0.536107 | 4_1:-75253806 | Msa0572350:CDS |
| AACTTACCTGATTAATATGT+AGG | 0.538956 | 4_1:+75254346 | None:intergenic |
| AAGAGTTCATCCCAATACAT+TGG | 0.544862 | 4_1:+75255290 | None:intergenic |
| GTGCATAGCGTGTGAAGCAA+TGG | 0.545847 | 4_1:+75253607 | None:intergenic |
| TCCCCAAAGAAGTTGATCAA+TGG | 0.546706 | 4_1:-75253499 | Msa0572350:CDS |
| AAGGAATCATTGTCTTTCCG+TGG | 0.552112 | 4_1:-75253421 | Msa0572350:three_prime_UTR |
| CGTTCATCAGAAATTTCGGT+GGG | 0.552815 | 4_1:-75254495 | Msa0572350:CDS |
| ATTTCGTATGAATCTTTGCA+TGG | 0.553793 | 4_1:+75255470 | None:intergenic |
| GCCATTGATCAACTTCTTTG+GGG | 0.566266 | 4_1:+75253498 | None:intergenic |
| TAAACTAAATATTGAATCCA+CGG | 0.567259 | 4_1:+75253404 | None:intergenic |
| GAAGCGAATTTCAATTCATG+AGG | 0.569524 | 4_1:-75254409 | Msa0572350:CDS |
| TGAAATGGGAAGCTTTGGAA+TGG | 0.574755 | 4_1:-75255525 | Msa0572350:exon |
| AAAACACTATCAATAATTGA+AGG | 0.575576 | 4_1:-75253562 | Msa0572350:CDS |
| AGGAAATTTACATCAAGAAG+AGG | 0.583940 | 4_1:+75255242 | None:intergenic |
| TAGAACTTGGCCAAAGACAC+AGG | 0.588549 | 4_1:-75255552 | Msa0572350:five_prime_UTR |
| GCTGAAGATGAAATTGTGGC+TGG | 0.598274 | 4_1:-75254679 | Msa0572350:CDS |
| AAGATGAAATTGTGGCTGGC+GGG | 0.598366 | 4_1:-75254675 | Msa0572350:CDS |
| GGCCGCAACTTCATTTCGCG+AGG | 0.608331 | 4_1:-75254649 | Msa0572350:CDS |
| AGGAGTTTGAGTTTGAGCAA+AGG | 0.620802 | 4_1:+75255364 | None:intergenic |
| TGCCTCGCGAAATGAAGTTG+CGG | 0.622537 | 4_1:+75254647 | None:intergenic |
| TGTTGCTTATACATATGCTG+GGG | 0.624573 | 4_1:-75254861 | Msa0572350:CDS |
| ACAATTTCATCTTCAGCTGG+TGG | 0.626215 | 4_1:+75254685 | None:intergenic |
| TCGTTCATCAGAAATTTCGG+TGG | 0.628286 | 4_1:-75254496 | Msa0572350:CDS |
| GGCCATTGCAGCACACAATG+AGG | 0.628702 | 4_1:-75255040 | Msa0572350:CDS |
| TAGGCCAAAGATTCTCCCAA+CGG | 0.638678 | 4_1:-75255436 | Msa0572350:CDS |
| GGTGACGATACATGTTTGCA+TGG | 0.654853 | 4_1:+75254367 | None:intergenic |
| TTCTTCCAAATCGATAACAG+CGG | 0.661004 | 4_1:+75253585 | None:intergenic |
| ACCAGCTGAAGATGAAATTG+TGG | 0.661651 | 4_1:-75254683 | Msa0572350:CDS |
| TAATTGAAATAAGTACTCGT+AGG | 0.665353 | 4_1:-75254458 | Msa0572350:CDS |
| TGTATTGGGATGAACTCTTG+GGG | 0.665867 | 4_1:-75255286 | Msa0572350:CDS |
| ACGCTTACGTGTGACCAACA+AGG | 0.668777 | 4_1:+75255004 | None:intergenic |
| GTTCATCAGAAATTTCGGTG+GGG | 0.678470 | 4_1:-75254494 | Msa0572350:CDS |
| GAAGATGAAATTGTGGCTGG+CGG | 0.698151 | 4_1:-75254676 | Msa0572350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAAATTTTAATTAAATGAA+AGG | - | chr4_1:75255517-75255536 | Msa0572350:CDS | 10.0% |
| !!! | TCAAATTTTAATTAAATGAA+AGG | - | chr4_1:75255517-75255536 | Msa0572350:CDS | 10.0% |
| !! | TTTACTTATTAATTTCAAGA+AGG | - | chr4_1:75253806-75253825 | Msa0572350:CDS | 15.0% |
| !! | AAATCAATCTTATCTTATAT+GGG | + | chr4_1:75254831-75254850 | None:intergenic | 15.0% |
| !! | AAAATCAATCTTATCTTATA+TGG | + | chr4_1:75254832-75254851 | None:intergenic | 15.0% |
| !! | AAAAGAAAAATTCAATAGAA+GGG | + | chr4_1:75255295-75255314 | None:intergenic | 15.0% |
| !!! | AATATTTAGTTTAACTCATA+AGG | - | chr4_1:75255563-75255582 | Msa0572350:five_prime_UTR | 15.0% |
| !! | TTTACTTATTAATTTCAAGA+AGG | - | chr4_1:75253806-75253825 | Msa0572350:CDS | 15.0% |
| !! | AAATCAATCTTATCTTATAT+GGG | + | chr4_1:75254831-75254850 | None:intergenic | 15.0% |
| !! | AAAATCAATCTTATCTTATA+TGG | + | chr4_1:75254832-75254851 | None:intergenic | 15.0% |
| !! | AAAAGAAAAATTCAATAGAA+GGG | + | chr4_1:75255295-75255314 | None:intergenic | 15.0% |
| !!! | AATATTTAGTTTAACTCATA+AGG | - | chr4_1:75255563-75255582 | Msa0572350:five_prime_UTR | 15.0% |
| !!! | TCTTCTAAACTTTTTTCTTT+CGG | + | chr4_1:75253849-75253868 | None:intergenic | 20.0% |
| !!! | GTTTTGAAATTCGAATAAAA+TGG | - | chr4_1:75253991-75254010 | Msa0572350:intron | 20.0% |
| !!! | ATAAGTATTCTTTCCTTTTT+CGG | - | chr4_1:75254018-75254037 | Msa0572350:intron | 20.0% |
| !!! | TGAAGTTCAGTTTTAATATT+GGG | - | chr4_1:75254749-75254768 | Msa0572350:intron | 20.0% |
| !! | TATTGAAAGAAGAAGAAAAA+CGG | - | chr4_1:75255038-75255057 | Msa0572350:CDS | 20.0% |
| !! | AAAGAAAAATTCAATAGAAG+GGG | + | chr4_1:75255294-75255313 | None:intergenic | 20.0% |
| !! | CAAAAGAAAAATTCAATAGA+AGG | + | chr4_1:75255296-75255315 | None:intergenic | 20.0% |
| !! | AAAACACTATCAATAATTGA+AGG | - | chr4_1:75255395-75255414 | Msa0572350:CDS | 20.0% |
| !!! | ATTGAAACATCTTCTTTTTT+CGG | + | chr4_1:75255425-75255444 | None:intergenic | 20.0% |
| !! | ATTATAAGTGATTATGATGA+TGG | + | chr4_1:75255484-75255503 | None:intergenic | 20.0% |
| !! | TAAACTAAATATTGAATCCA+CGG | + | chr4_1:75255556-75255575 | None:intergenic | 20.0% |
| !! | CAAAAAAAAAAAATGCATGA+TGG | + | chr4_1:75255605-75255624 | None:intergenic | 20.0% |
| !!! | CATGCATTTTTTTTTTTTGA+AGG | - | chr4_1:75255606-75255625 | Msa0572350:five_prime_UTR | 20.0% |
| !! | TACCAATAATGAAATTATCA+AGG | - | chr4_1:75255631-75255650 | Msa0572350:five_prime_UTR | 20.0% |
| !!! | TCTTCTAAACTTTTTTCTTT+CGG | + | chr4_1:75253849-75253868 | None:intergenic | 20.0% |
| !!! | GTTTTGAAATTCGAATAAAA+TGG | - | chr4_1:75253991-75254010 | Msa0572350:intron | 20.0% |
| !!! | ATAAGTATTCTTTCCTTTTT+CGG | - | chr4_1:75254018-75254037 | Msa0572350:intron | 20.0% |
| !!! | TGAAGTTCAGTTTTAATATT+GGG | - | chr4_1:75254749-75254768 | Msa0572350:intron | 20.0% |
| !! | TATTGAAAGAAGAAGAAAAA+CGG | - | chr4_1:75255038-75255057 | Msa0572350:CDS | 20.0% |
| !! | AAAGAAAAATTCAATAGAAG+GGG | + | chr4_1:75255294-75255313 | None:intergenic | 20.0% |
| !! | CAAAAGAAAAATTCAATAGA+AGG | + | chr4_1:75255296-75255315 | None:intergenic | 20.0% |
| !! | AAAACACTATCAATAATTGA+AGG | - | chr4_1:75255395-75255414 | Msa0572350:CDS | 20.0% |
| !!! | ATTGAAACATCTTCTTTTTT+CGG | + | chr4_1:75255425-75255444 | None:intergenic | 20.0% |
| !! | ATTATAAGTGATTATGATGA+TGG | + | chr4_1:75255484-75255503 | None:intergenic | 20.0% |
| !! | TAAACTAAATATTGAATCCA+CGG | + | chr4_1:75255556-75255575 | None:intergenic | 20.0% |
| !! | CAAAAAAAAAAAATGCATGA+TGG | + | chr4_1:75255605-75255624 | None:intergenic | 20.0% |
| !!! | CATGCATTTTTTTTTTTTGA+AGG | - | chr4_1:75255606-75255625 | Msa0572350:five_prime_UTR | 20.0% |
| ! | TACTATACATGCAATAACAT+TGG | + | chr4_1:75253757-75253776 | None:intergenic | 25.0% |
| ! | TTATGCAGCTACTTAATTAA+AGG | - | chr4_1:75254049-75254068 | Msa0572350:intron | 25.0% |
| ! | ATTAAAGGAATATTGCCAAA+TGG | - | chr4_1:75254064-75254083 | Msa0572350:intron | 25.0% |
| ! | TTAAAGGAATATTGCCAAAT+GGG | - | chr4_1:75254065-75254084 | Msa0572350:intron | 25.0% |
| !! | AAATTTGCTTTATGATCGTT+AGG | - | chr4_1:75254229-75254248 | Msa0572350:intron | 25.0% |
| ! | TACGAGTACTTATTTCAATT+AGG | + | chr4_1:75254500-75254519 | None:intergenic | 25.0% |
| ! | TAATTGAAATAAGTACTCGT+AGG | - | chr4_1:75254499-75254518 | Msa0572350:CDS | 25.0% |
| ! | AACTTACCTGATTAATATGT+AGG | + | chr4_1:75254614-75254633 | None:intergenic | 25.0% |
| ! | ATCTCAATCCACTTTATATT+TGG | - | chr4_1:75254695-75254714 | Msa0572350:CDS | 25.0% |
| ! | TCTCAATCCACTTTATATTT+GGG | - | chr4_1:75254696-75254715 | Msa0572350:CDS | 25.0% |
| !!! | CTGAAGTTCAGTTTTAATAT+TGG | - | chr4_1:75254748-75254767 | Msa0572350:intron | 25.0% |
| !!! | GAAGTTCAGTTTTAATATTG+GGG | - | chr4_1:75254750-75254769 | Msa0572350:intron | 25.0% |
| ! | AATTTAATCATGCTCTCTTT+AGG | + | chr4_1:75254802-75254821 | None:intergenic | 25.0% |
| !! | CTTTCAGTGTAAAATGTTTT+AGG | - | chr4_1:75254864-75254883 | Msa0572350:CDS | 25.0% |
| ! | TTTAATCATAACAACCTCTA+AGG | + | chr4_1:75254942-75254961 | None:intergenic | 25.0% |
| ! | ATCTGAAAATCATAGATTGA+CGG | - | chr4_1:75254979-75254998 | Msa0572350:intron | 25.0% |
| ! | GTTTCTATTACTAAAGTCAA+TGG | - | chr4_1:75255110-75255129 | Msa0572350:CDS | 25.0% |
| ! | GTCAATGGAATTTAAATTGA+AGG | - | chr4_1:75255125-75255144 | Msa0572350:CDS | 25.0% |
| !!! | AAAATCCTCTTTTGTTGTTT+TGG | + | chr4_1:75255199-75255218 | None:intergenic | 25.0% |
| ! | AAATTACCTGTCATATAGAT+GGG | + | chr4_1:75255258-75255277 | None:intergenic | 25.0% |
| !! | TTTTCTTCTTCCTTATTCTT+AGG | - | chr4_1:75255326-75255345 | Msa0572350:CDS | 25.0% |
| ! | TACTATACATGCAATAACAT+TGG | + | chr4_1:75253757-75253776 | None:intergenic | 25.0% |
| ! | TTATGCAGCTACTTAATTAA+AGG | - | chr4_1:75254049-75254068 | Msa0572350:intron | 25.0% |
| ! | ATTAAAGGAATATTGCCAAA+TGG | - | chr4_1:75254064-75254083 | Msa0572350:intron | 25.0% |
| ! | TTAAAGGAATATTGCCAAAT+GGG | - | chr4_1:75254065-75254084 | Msa0572350:intron | 25.0% |
| !! | AAATTTGCTTTATGATCGTT+AGG | - | chr4_1:75254229-75254248 | Msa0572350:intron | 25.0% |
| ! | TACGAGTACTTATTTCAATT+AGG | + | chr4_1:75254500-75254519 | None:intergenic | 25.0% |
| ! | TAATTGAAATAAGTACTCGT+AGG | - | chr4_1:75254499-75254518 | Msa0572350:CDS | 25.0% |
| ! | AACTTACCTGATTAATATGT+AGG | + | chr4_1:75254614-75254633 | None:intergenic | 25.0% |
| ! | ATCTCAATCCACTTTATATT+TGG | - | chr4_1:75254695-75254714 | Msa0572350:CDS | 25.0% |
| ! | TCTCAATCCACTTTATATTT+GGG | - | chr4_1:75254696-75254715 | Msa0572350:CDS | 25.0% |
| !!! | CTGAAGTTCAGTTTTAATAT+TGG | - | chr4_1:75254748-75254767 | Msa0572350:intron | 25.0% |
| !!! | GAAGTTCAGTTTTAATATTG+GGG | - | chr4_1:75254750-75254769 | Msa0572350:intron | 25.0% |
| ! | AATTTAATCATGCTCTCTTT+AGG | + | chr4_1:75254802-75254821 | None:intergenic | 25.0% |
| !! | CTTTCAGTGTAAAATGTTTT+AGG | - | chr4_1:75254864-75254883 | Msa0572350:CDS | 25.0% |
| ! | TTTAATCATAACAACCTCTA+AGG | + | chr4_1:75254942-75254961 | None:intergenic | 25.0% |
| ! | ATCTGAAAATCATAGATTGA+CGG | - | chr4_1:75254979-75254998 | Msa0572350:intron | 25.0% |
| ! | GTTTCTATTACTAAAGTCAA+TGG | - | chr4_1:75255110-75255129 | Msa0572350:CDS | 25.0% |
| ! | GTCAATGGAATTTAAATTGA+AGG | - | chr4_1:75255125-75255144 | Msa0572350:CDS | 25.0% |
| !!! | AAAATCCTCTTTTGTTGTTT+TGG | + | chr4_1:75255199-75255218 | None:intergenic | 25.0% |
| ! | AAATTACCTGTCATATAGAT+GGG | + | chr4_1:75255258-75255277 | None:intergenic | 25.0% |
| !! | TTTTCTTCTTCCTTATTCTT+AGG | - | chr4_1:75255326-75255345 | Msa0572350:CDS | 25.0% |
| TTTGTGTTCATTGTAGAACT+TGG | - | chr4_1:75253392-75253411 | Msa0572350:three_prime_UTR | 30.0% | |
| ! | AAACTTGAGATGTTTGAAGT+TGG | - | chr4_1:75253463-75253482 | Msa0572350:exon | 30.0% |
| ATTTCGTATGAATCTTTGCA+TGG | + | chr4_1:75253490-75253509 | None:intergenic | 30.0% | |
| ATGCAAAGATTCATACGAAA+TGG | - | chr4_1:75253489-75253508 | Msa0572350:CDS | 30.0% | |
| TGCAAAGATTCATACGAAAT+GGG | - | chr4_1:75253490-75253509 | Msa0572350:CDS | 30.0% | |
| ! | TACGAAATGGGTTTCTTAAT+AGG | - | chr4_1:75253502-75253521 | Msa0572350:CDS | 30.0% |
| !!! | CACTCTATTTTTTATCCGTT+GGG | + | chr4_1:75253539-75253558 | None:intergenic | 30.0% |
| !!! | TCTAAGCTGATTTTGAAGTA+TGG | + | chr4_1:75253572-75253591 | None:intergenic | 30.0% |
| AAACCAAATTCCCAATGTAT+TGG | - | chr4_1:75253656-75253675 | Msa0572350:intron | 30.0% | |
| AACCAAATTCCCAATGTATT+GGG | - | chr4_1:75253657-75253676 | Msa0572350:intron | 30.0% | |
| AGGAAATTTACATCAAGAAG+AGG | + | chr4_1:75253718-75253737 | None:intergenic | 30.0% | |
| ! | TTTGTTGCTTATACATATGC+TGG | - | chr4_1:75254094-75254113 | Msa0572350:intron | 30.0% |
| ! | TTGTTGCTTATACATATGCT+GGG | - | chr4_1:75254095-75254114 | Msa0572350:intron | 30.0% |
| GCATTTGCATTTAATAGCAA+TGG | - | chr4_1:75254133-75254152 | Msa0572350:intron | 30.0% | |
| TGCATTTAATAGCAATGGAT+TGG | - | chr4_1:75254138-75254157 | Msa0572350:intron | 30.0% | |
| !!! | TTATGCTCTTGTTTTAACAG+AGG | - | chr4_1:75254436-75254455 | Msa0572350:CDS | 30.0% |
| GATTCGTTCATCAGAAATTT+CGG | - | chr4_1:75254458-75254477 | Msa0572350:CDS | 30.0% | |
| TATTTCCATGACTCAGAAAA+TGG | + | chr4_1:75254676-75254695 | None:intergenic | 30.0% | |
| CTCAATCCACTTTATATTTG+GGG | - | chr4_1:75254697-75254716 | Msa0572350:CDS | 30.0% | |
| TCAATCCACTTTATATTTGG+GGG | - | chr4_1:75254698-75254717 | Msa0572350:CDS | 30.0% | |
| !! | TTCAGTTTTAATATTGGGGA+CGG | - | chr4_1:75254754-75254773 | Msa0572350:intron | 30.0% |
| CTTAACCAAAACAACAAAAG+AGG | - | chr4_1:75255191-75255210 | Msa0572350:intron | 30.0% | |
| AAAAATCCCATCTATATGAC+AGG | - | chr4_1:75255249-75255268 | Msa0572350:intron | 30.0% | |
| CAAATTACCTGTCATATAGA+TGG | + | chr4_1:75255259-75255278 | None:intergenic | 30.0% | |
| CATCTATATGACAGGTAATT+TGG | - | chr4_1:75255257-75255276 | Msa0572350:CDS | 30.0% | |
| TTTGTGTTCATTGTAGAACT+TGG | - | chr4_1:75253392-75253411 | Msa0572350:three_prime_UTR | 30.0% | |
| ! | AAACTTGAGATGTTTGAAGT+TGG | - | chr4_1:75253463-75253482 | Msa0572350:exon | 30.0% |
| ATTTCGTATGAATCTTTGCA+TGG | + | chr4_1:75253490-75253509 | None:intergenic | 30.0% | |
| ATGCAAAGATTCATACGAAA+TGG | - | chr4_1:75253489-75253508 | Msa0572350:CDS | 30.0% | |
| TGCAAAGATTCATACGAAAT+GGG | - | chr4_1:75253490-75253509 | Msa0572350:CDS | 30.0% | |
| ! | TACGAAATGGGTTTCTTAAT+AGG | - | chr4_1:75253502-75253521 | Msa0572350:CDS | 30.0% |
| !!! | CACTCTATTTTTTATCCGTT+GGG | + | chr4_1:75253539-75253558 | None:intergenic | 30.0% |
| !!! | TCTAAGCTGATTTTGAAGTA+TGG | + | chr4_1:75253572-75253591 | None:intergenic | 30.0% |
| AAACCAAATTCCCAATGTAT+TGG | - | chr4_1:75253656-75253675 | Msa0572350:intron | 30.0% | |
| AACCAAATTCCCAATGTATT+GGG | - | chr4_1:75253657-75253676 | Msa0572350:intron | 30.0% | |
| AGGAAATTTACATCAAGAAG+AGG | + | chr4_1:75253718-75253737 | None:intergenic | 30.0% | |
| ! | TTTGTTGCTTATACATATGC+TGG | - | chr4_1:75254094-75254113 | Msa0572350:intron | 30.0% |
| ! | TTGTTGCTTATACATATGCT+GGG | - | chr4_1:75254095-75254114 | Msa0572350:intron | 30.0% |
| GCATTTGCATTTAATAGCAA+TGG | - | chr4_1:75254133-75254152 | Msa0572350:intron | 30.0% | |
| TGCATTTAATAGCAATGGAT+TGG | - | chr4_1:75254138-75254157 | Msa0572350:intron | 30.0% | |
| !!! | TTATGCTCTTGTTTTAACAG+AGG | - | chr4_1:75254436-75254455 | Msa0572350:CDS | 30.0% |
| GATTCGTTCATCAGAAATTT+CGG | - | chr4_1:75254458-75254477 | Msa0572350:CDS | 30.0% | |
| TATTTCCATGACTCAGAAAA+TGG | + | chr4_1:75254676-75254695 | None:intergenic | 30.0% | |
| CTCAATCCACTTTATATTTG+GGG | - | chr4_1:75254697-75254716 | Msa0572350:CDS | 30.0% | |
| TCAATCCACTTTATATTTGG+GGG | - | chr4_1:75254698-75254717 | Msa0572350:CDS | 30.0% | |
| !! | TTCAGTTTTAATATTGGGGA+CGG | - | chr4_1:75254754-75254773 | Msa0572350:intron | 30.0% |
| CTTAACCAAAACAACAAAAG+AGG | - | chr4_1:75255191-75255210 | Msa0572350:intron | 30.0% | |
| AAAAATCCCATCTATATGAC+AGG | - | chr4_1:75255249-75255268 | Msa0572350:intron | 30.0% | |
| CAAATTACCTGTCATATAGA+TGG | + | chr4_1:75255259-75255278 | None:intergenic | 30.0% | |
| CATCTATATGACAGGTAATT+TGG | - | chr4_1:75255257-75255276 | Msa0572350:CDS | 30.0% | |
| CAGTATCTAAGCACTATAAG+AGG | - | chr4_1:75253352-75253371 | Msa0572350:three_prime_UTR | 35.0% | |
| !!! | CCACTCTATTTTTTATCCGT+TGG | + | chr4_1:75253540-75253559 | None:intergenic | 35.0% |
| CCAACGGATAAAAAATAGAG+TGG | - | chr4_1:75253537-75253556 | Msa0572350:CDS | 35.0% | |
| TTGAGAAGTGATTCTGATTG+AGG | + | chr4_1:75253616-75253635 | None:intergenic | 35.0% | |
| ATCCCAATACATTGGGAATT+TGG | + | chr4_1:75253662-75253681 | None:intergenic | 35.0% | |
| AGAGTTCATCCCAATACATT+GGG | + | chr4_1:75253669-75253688 | None:intergenic | 35.0% | |
| AAGAGTTCATCCCAATACAT+TGG | + | chr4_1:75253670-75253689 | None:intergenic | 35.0% | |
| AATGTATTGGGATGAACTCT+TGG | - | chr4_1:75253669-75253688 | Msa0572350:intron | 35.0% | |
| ATGTATTGGGATGAACTCTT+GGG | - | chr4_1:75253670-75253689 | Msa0572350:intron | 35.0% | |
| TTGGTGTATGTTTGTAGTAG+AGG | + | chr4_1:75253738-75253757 | None:intergenic | 35.0% | |
| ! | TGTTCTACAGTTCTTGTTGT+TGG | - | chr4_1:75253885-75253904 | Msa0572350:intron | 35.0% |
| !! | TCTTGTTGTTGGTGAATCTA+TGG | - | chr4_1:75253896-75253915 | Msa0572350:intron | 35.0% |
| CATAACAGAAAGACCGAAAA+AGG | + | chr4_1:75254034-75254053 | None:intergenic | 35.0% | |
| ! | TGTTGCTTATACATATGCTG+GGG | - | chr4_1:75254096-75254115 | Msa0572350:intron | 35.0% |
| TTAAATGCAAATGCAGAGCT+TGG | + | chr4_1:75254127-75254146 | None:intergenic | 35.0% | |
| AGAGATCATTCGCAATAACA+GGG | + | chr4_1:75254172-75254191 | None:intergenic | 35.0% | |
| AAGAGATCATTCGCAATAAC+AGG | + | chr4_1:75254173-75254192 | None:intergenic | 35.0% | |
| GAAGCGAATTTCAATTCATG+AGG | - | chr4_1:75254548-75254567 | Msa0572350:intron | 35.0% | |
| CGAATTTCAATTCATGAGGT+TGG | - | chr4_1:75254552-75254571 | Msa0572350:intron | 35.0% | |
| TACATGTTTGCATGGAAGAA+AGG | + | chr4_1:75254585-75254604 | None:intergenic | 35.0% | |
| TCGTCACCTACATATTAATC+AGG | - | chr4_1:75254605-75254624 | Msa0572350:intron | 35.0% | |
| ! | TCTAAGGTCATGCATATGAA+TGG | + | chr4_1:75254926-75254945 | None:intergenic | 35.0% |
| ATTCATATGCATGACCTTAG+AGG | - | chr4_1:75254925-75254944 | Msa0572350:intron | 35.0% | |
| ! | GAGGATTTTCTGTCAATTCT+AGG | - | chr4_1:75255210-75255229 | Msa0572350:intron | 35.0% |
| AAGCAATGGACCTAAGAATA+AGG | + | chr4_1:75255339-75255358 | None:intergenic | 35.0% | |
| TTCTTCCAAATCGATAACAG+CGG | + | chr4_1:75255375-75255394 | None:intergenic | 35.0% | |
| CAGTATCTAAGCACTATAAG+AGG | - | chr4_1:75253352-75253371 | Msa0572350:three_prime_UTR | 35.0% | |
| !!! | CCACTCTATTTTTTATCCGT+TGG | + | chr4_1:75253540-75253559 | None:intergenic | 35.0% |
| CCAACGGATAAAAAATAGAG+TGG | - | chr4_1:75253537-75253556 | Msa0572350:CDS | 35.0% | |
| TTGAGAAGTGATTCTGATTG+AGG | + | chr4_1:75253616-75253635 | None:intergenic | 35.0% | |
| ATCCCAATACATTGGGAATT+TGG | + | chr4_1:75253662-75253681 | None:intergenic | 35.0% | |
| AGAGTTCATCCCAATACATT+GGG | + | chr4_1:75253669-75253688 | None:intergenic | 35.0% | |
| AAGAGTTCATCCCAATACAT+TGG | + | chr4_1:75253670-75253689 | None:intergenic | 35.0% | |
| AATGTATTGGGATGAACTCT+TGG | - | chr4_1:75253669-75253688 | Msa0572350:intron | 35.0% | |
| ATGTATTGGGATGAACTCTT+GGG | - | chr4_1:75253670-75253689 | Msa0572350:intron | 35.0% | |
| TTGGTGTATGTTTGTAGTAG+AGG | + | chr4_1:75253738-75253757 | None:intergenic | 35.0% | |
| ! | TGTTCTACAGTTCTTGTTGT+TGG | - | chr4_1:75253885-75253904 | Msa0572350:intron | 35.0% |
| !! | TCTTGTTGTTGGTGAATCTA+TGG | - | chr4_1:75253896-75253915 | Msa0572350:intron | 35.0% |
| CATAACAGAAAGACCGAAAA+AGG | + | chr4_1:75254034-75254053 | None:intergenic | 35.0% | |
| ! | TGTTGCTTATACATATGCTG+GGG | - | chr4_1:75254096-75254115 | Msa0572350:intron | 35.0% |
| TTAAATGCAAATGCAGAGCT+TGG | + | chr4_1:75254127-75254146 | None:intergenic | 35.0% | |
| AGAGATCATTCGCAATAACA+GGG | + | chr4_1:75254172-75254191 | None:intergenic | 35.0% | |
| AAGAGATCATTCGCAATAAC+AGG | + | chr4_1:75254173-75254192 | None:intergenic | 35.0% | |
| GAAGCGAATTTCAATTCATG+AGG | - | chr4_1:75254548-75254567 | Msa0572350:intron | 35.0% | |
| CGAATTTCAATTCATGAGGT+TGG | - | chr4_1:75254552-75254571 | Msa0572350:intron | 35.0% | |
| TACATGTTTGCATGGAAGAA+AGG | + | chr4_1:75254585-75254604 | None:intergenic | 35.0% | |
| TCGTCACCTACATATTAATC+AGG | - | chr4_1:75254605-75254624 | Msa0572350:intron | 35.0% | |
| ! | TCTAAGGTCATGCATATGAA+TGG | + | chr4_1:75254926-75254945 | None:intergenic | 35.0% |
| ATTCATATGCATGACCTTAG+AGG | - | chr4_1:75254925-75254944 | Msa0572350:intron | 35.0% | |
| ! | GAGGATTTTCTGTCAATTCT+AGG | - | chr4_1:75255210-75255229 | Msa0572350:intron | 35.0% |
| AAGCAATGGACCTAAGAATA+AGG | + | chr4_1:75255339-75255358 | None:intergenic | 35.0% | |
| TTCTTCCAAATCGATAACAG+CGG | + | chr4_1:75255375-75255394 | None:intergenic | 35.0% | |
| ATTTCACGTTCCTGTGTCTT+TGG | + | chr4_1:75253418-75253437 | None:intergenic | 40.0% | |
| AAAGACACAGGAACGTGAAA+TGG | - | chr4_1:75253417-75253436 | Msa0572350:three_prime_UTR | 40.0% | |
| AAGACACAGGAACGTGAAAT+GGG | - | chr4_1:75253418-75253437 | Msa0572350:three_prime_UTR | 40.0% | |
| !! | TGAAATGGGAAGCTTTGGAA+TGG | - | chr4_1:75253432-75253451 | Msa0572350:three_prime_UTR | 40.0% |
| TTATCCGTTGGGAGAATCTT+TGG | + | chr4_1:75253528-75253547 | None:intergenic | 40.0% | |
| ! | GGAGTTTGAGTTTGAGCAAA+GGG | + | chr4_1:75253595-75253614 | None:intergenic | 40.0% |
| ! | AGGAGTTTGAGTTTGAGCAA+AGG | + | chr4_1:75253596-75253615 | None:intergenic | 40.0% |
| TGTATTGGGATGAACTCTTG+GGG | - | chr4_1:75253671-75253690 | Msa0572350:intron | 40.0% | |
| GATGCAAATGTTGTCCTTGT+TGG | - | chr4_1:75253939-75253958 | Msa0572350:intron | 40.0% | |
| GCAACAAAGAATAGCCCATT+TGG | + | chr4_1:75254082-75254101 | None:intergenic | 40.0% | |
| ACAATTTCATCTTCAGCTGG+TGG | + | chr4_1:75254275-75254294 | None:intergenic | 40.0% | |
| ACCAGCTGAAGATGAAATTG+TGG | - | chr4_1:75254274-75254293 | Msa0572350:intron | 40.0% | |
| TCGTTCATCAGAAATTTCGG+TGG | - | chr4_1:75254461-75254480 | Msa0572350:CDS | 40.0% | |
| CGTTCATCAGAAATTTCGGT+GGG | - | chr4_1:75254462-75254481 | Msa0572350:CDS | 40.0% | |
| GTTCATCAGAAATTTCGGTG+GGG | - | chr4_1:75254463-75254482 | Msa0572350:CDS | 40.0% | |
| AGTCACCCCCAAATATAAAG+TGG | + | chr4_1:75254706-75254725 | None:intergenic | 40.0% | |
| !! | GTGTACTGGTTTAATTGCAC+AGG | - | chr4_1:75254776-75254795 | Msa0572350:intron | 40.0% |
| AAGATGAGAGTTCAATCAGC+AGG | - | chr4_1:75255151-75255170 | Msa0572350:CDS | 40.0% | |
| TTCAATCAGCAGGCAGAAAA+GGG | - | chr4_1:75255161-75255180 | Msa0572350:intron | 40.0% | |
| ! | TCCCCAAAGAAGTTGATCAA+TGG | - | chr4_1:75255458-75255477 | Msa0572350:CDS | 40.0% |
| GCCATTGATCAACTTCTTTG+GGG | + | chr4_1:75255462-75255481 | None:intergenic | 40.0% | |
| GGCCATTGATCAACTTCTTT+GGG | + | chr4_1:75255463-75255482 | None:intergenic | 40.0% | |
| TGGCCATTGATCAACTTCTT+TGG | + | chr4_1:75255464-75255483 | None:intergenic | 40.0% | |
| AAGGAATCATTGTCTTTCCG+TGG | - | chr4_1:75255536-75255555 | Msa0572350:exon | 40.0% | |
| ATTTCACGTTCCTGTGTCTT+TGG | + | chr4_1:75253418-75253437 | None:intergenic | 40.0% | |
| AAAGACACAGGAACGTGAAA+TGG | - | chr4_1:75253417-75253436 | Msa0572350:three_prime_UTR | 40.0% | |
| AAGACACAGGAACGTGAAAT+GGG | - | chr4_1:75253418-75253437 | Msa0572350:three_prime_UTR | 40.0% | |
| !! | TGAAATGGGAAGCTTTGGAA+TGG | - | chr4_1:75253432-75253451 | Msa0572350:three_prime_UTR | 40.0% |
| TTATCCGTTGGGAGAATCTT+TGG | + | chr4_1:75253528-75253547 | None:intergenic | 40.0% | |
| ! | GGAGTTTGAGTTTGAGCAAA+GGG | + | chr4_1:75253595-75253614 | None:intergenic | 40.0% |
| ! | AGGAGTTTGAGTTTGAGCAA+AGG | + | chr4_1:75253596-75253615 | None:intergenic | 40.0% |
| TGTATTGGGATGAACTCTTG+GGG | - | chr4_1:75253671-75253690 | Msa0572350:intron | 40.0% | |
| GATGCAAATGTTGTCCTTGT+TGG | - | chr4_1:75253939-75253958 | Msa0572350:intron | 40.0% | |
| GCAACAAAGAATAGCCCATT+TGG | + | chr4_1:75254082-75254101 | None:intergenic | 40.0% | |
| ACAATTTCATCTTCAGCTGG+TGG | + | chr4_1:75254275-75254294 | None:intergenic | 40.0% | |
| ACCAGCTGAAGATGAAATTG+TGG | - | chr4_1:75254274-75254293 | Msa0572350:intron | 40.0% | |
| TCGTTCATCAGAAATTTCGG+TGG | - | chr4_1:75254461-75254480 | Msa0572350:CDS | 40.0% | |
| CGTTCATCAGAAATTTCGGT+GGG | - | chr4_1:75254462-75254481 | Msa0572350:CDS | 40.0% | |
| GTTCATCAGAAATTTCGGTG+GGG | - | chr4_1:75254463-75254482 | Msa0572350:CDS | 40.0% | |
| AGTCACCCCCAAATATAAAG+TGG | + | chr4_1:75254706-75254725 | None:intergenic | 40.0% | |
| !! | GTGTACTGGTTTAATTGCAC+AGG | - | chr4_1:75254776-75254795 | Msa0572350:intron | 40.0% |
| AAGATGAGAGTTCAATCAGC+AGG | - | chr4_1:75255151-75255170 | Msa0572350:CDS | 40.0% | |
| TTCAATCAGCAGGCAGAAAA+GGG | - | chr4_1:75255161-75255180 | Msa0572350:intron | 40.0% | |
| ! | TCCCCAAAGAAGTTGATCAA+TGG | - | chr4_1:75255458-75255477 | Msa0572350:CDS | 40.0% |
| GCCATTGATCAACTTCTTTG+GGG | + | chr4_1:75255462-75255481 | None:intergenic | 40.0% | |
| GGCCATTGATCAACTTCTTT+GGG | + | chr4_1:75255463-75255482 | None:intergenic | 40.0% | |
| TGGCCATTGATCAACTTCTT+TGG | + | chr4_1:75255464-75255483 | None:intergenic | 40.0% | |
| AAGGAATCATTGTCTTTCCG+TGG | - | chr4_1:75255536-75255555 | Msa0572350:exon | 40.0% | |
| TAGAACTTGGCCAAAGACAC+AGG | - | chr4_1:75253405-75253424 | Msa0572350:three_prime_UTR | 45.0% | |
| GAACGTGAAATGGGAAGCTT+TGG | - | chr4_1:75253427-75253446 | Msa0572350:three_prime_UTR | 45.0% | |
| TAGGCCAAAGATTCTCCCAA+CGG | - | chr4_1:75253521-75253540 | Msa0572350:CDS | 45.0% | |
| ATCCTCATTGTGTGCTGCAA+TGG | + | chr4_1:75253922-75253941 | None:intergenic | 45.0% | |
| GCCACAATTTCATCTTCAGC+TGG | + | chr4_1:75254278-75254297 | None:intergenic | 45.0% | |
| GCTGAAGATGAAATTGTGGC+TGG | - | chr4_1:75254278-75254297 | Msa0572350:intron | 45.0% | |
| GAAGATGAAATTGTGGCTGG+CGG | - | chr4_1:75254281-75254300 | Msa0572350:intron | 45.0% | |
| AAGATGAAATTGTGGCTGGC+GGG | - | chr4_1:75254282-75254301 | Msa0572350:intron | 45.0% | |
| GGTGACGATACATGTTTGCA+TGG | + | chr4_1:75254593-75254612 | None:intergenic | 45.0% | |
| CCATGACTCAGAAAATGGCT+AGG | + | chr4_1:75254671-75254690 | None:intergenic | 45.0% | |
| !! | CCTAGCCATTTTCTGAGTCA+TGG | - | chr4_1:75254668-75254687 | Msa0572350:CDS | 45.0% |
| TAATATTGGGGACGGTGTAC+TGG | - | chr4_1:75254762-75254781 | Msa0572350:intron | 45.0% | |
| GTTCAATCAGCAGGCAGAAA+AGG | - | chr4_1:75255160-75255179 | Msa0572350:intron | 45.0% | |
| ! | ATGCACCGCTGTTATCGATT+TGG | - | chr4_1:75255367-75255386 | Msa0572350:CDS | 45.0% |
| TAGAACTTGGCCAAAGACAC+AGG | - | chr4_1:75253405-75253424 | Msa0572350:three_prime_UTR | 45.0% | |
| GAACGTGAAATGGGAAGCTT+TGG | - | chr4_1:75253427-75253446 | Msa0572350:three_prime_UTR | 45.0% | |
| TAGGCCAAAGATTCTCCCAA+CGG | - | chr4_1:75253521-75253540 | Msa0572350:CDS | 45.0% | |
| ATCCTCATTGTGTGCTGCAA+TGG | + | chr4_1:75253922-75253941 | None:intergenic | 45.0% | |
| GCCACAATTTCATCTTCAGC+TGG | + | chr4_1:75254278-75254297 | None:intergenic | 45.0% | |
| GCTGAAGATGAAATTGTGGC+TGG | - | chr4_1:75254278-75254297 | Msa0572350:intron | 45.0% | |
| GAAGATGAAATTGTGGCTGG+CGG | - | chr4_1:75254281-75254300 | Msa0572350:intron | 45.0% | |
| AAGATGAAATTGTGGCTGGC+GGG | - | chr4_1:75254282-75254301 | Msa0572350:intron | 45.0% | |
| GGTGACGATACATGTTTGCA+TGG | + | chr4_1:75254593-75254612 | None:intergenic | 45.0% | |
| CCATGACTCAGAAAATGGCT+AGG | + | chr4_1:75254671-75254690 | None:intergenic | 45.0% | |
| !! | CCTAGCCATTTTCTGAGTCA+TGG | - | chr4_1:75254668-75254687 | Msa0572350:CDS | 45.0% |
| TAATATTGGGGACGGTGTAC+TGG | - | chr4_1:75254762-75254781 | Msa0572350:intron | 45.0% | |
| GTTCAATCAGCAGGCAGAAA+AGG | - | chr4_1:75255160-75255179 | Msa0572350:intron | 45.0% | |
| ! | ATGCACCGCTGTTATCGATT+TGG | - | chr4_1:75255367-75255386 | Msa0572350:CDS | 45.0% |
| ACGCTTACGTGTGACCAACA+AGG | + | chr4_1:75253956-75253975 | None:intergenic | 50.0% | |
| TGCCTCGCGAAATGAAGTTG+CGG | + | chr4_1:75254313-75254332 | None:intergenic | 50.0% | |
| ! | CGAGGCATTCTTGAAGCTAC+TGG | - | chr4_1:75254326-75254345 | Msa0572350:intron | 50.0% |
| GTGCATAGCGTGTGAAGCAA+TGG | + | chr4_1:75255353-75255372 | None:intergenic | 50.0% | |
| ACGCTTACGTGTGACCAACA+AGG | + | chr4_1:75253956-75253975 | None:intergenic | 50.0% | |
| TGCCTCGCGAAATGAAGTTG+CGG | + | chr4_1:75254313-75254332 | None:intergenic | 50.0% | |
| ! | CGAGGCATTCTTGAAGCTAC+TGG | - | chr4_1:75254326-75254345 | Msa0572350:intron | 50.0% |
| GTGCATAGCGTGTGAAGCAA+TGG | + | chr4_1:75255353-75255372 | None:intergenic | 50.0% | |
| GGCCATTGCAGCACACAATG+AGG | - | chr4_1:75253917-75253936 | Msa0572350:intron | 55.0% | |
| GAAATTGTGGCTGGCGGGAT+TGG | - | chr4_1:75254287-75254306 | Msa0572350:intron | 55.0% | |
| GGCCATTGCAGCACACAATG+AGG | - | chr4_1:75253917-75253936 | Msa0572350:intron | 55.0% | |
| GAAATTGTGGCTGGCGGGAT+TGG | - | chr4_1:75254287-75254306 | Msa0572350:intron | 55.0% | |
| GAACTCTTGGGGACTGCAGC+TGG | - | chr4_1:75253682-75253701 | Msa0572350:intron | 60.0% | |
| TTGGGGACTGCAGCTGGAAG+TGG | - | chr4_1:75253688-75253707 | Msa0572350:intron | 60.0% | |
| GGCCGCAACTTCATTTCGCG+AGG | - | chr4_1:75254308-75254327 | Msa0572350:intron | 60.0% | |
| GAACTCTTGGGGACTGCAGC+TGG | - | chr4_1:75253682-75253701 | Msa0572350:intron | 60.0% | |
| TTGGGGACTGCAGCTGGAAG+TGG | - | chr4_1:75253688-75253707 | Msa0572350:intron | 60.0% | |
| GGCCGCAACTTCATTTCGCG+AGG | - | chr4_1:75254308-75254327 | Msa0572350:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 75253327 | 75255652 | 75253327 | ID=Msa0572350;Name=Msa0572350 |
| chr4_1 | mRNA | 75253327 | 75255652 | 75253327 | ID=Msa0572350-mRNA-1;Parent=Msa0572350;Name=Msa0572350-mRNA-1;_AED=0.24;_eAED=0.24;_QI=109|1|1|1|1|1|7|150|374 |
| chr4_1 | exon | 75253327 | 75253631 | 75253327 | ID=Msa0572350-mRNA-1:exon:26060;Parent=Msa0572350-mRNA-1 |
| chr4_1 | exon | 75253709 | 75253832 | 75253709 | ID=Msa0572350-mRNA-1:exon:26059;Parent=Msa0572350-mRNA-1 |
| chr4_1 | exon | 75254353 | 75254523 | 75254353 | ID=Msa0572350-mRNA-1:exon:26058;Parent=Msa0572350-mRNA-1 |
| chr4_1 | exon | 75254612 | 75254728 | 75254612 | ID=Msa0572350-mRNA-1:exon:26057;Parent=Msa0572350-mRNA-1 |
| chr4_1 | exon | 75254820 | 75254922 | 75254820 | ID=Msa0572350-mRNA-1:exon:26056;Parent=Msa0572350-mRNA-1 |
| chr4_1 | exon | 75255012 | 75255175 | 75255012 | ID=Msa0572350-mRNA-1:exon:26055;Parent=Msa0572350-mRNA-1 |
| chr4_1 | exon | 75255253 | 75255652 | 75255253 | ID=Msa0572350-mRNA-1:exon:26054;Parent=Msa0572350-mRNA-1 |
| chr4_1 | five_prime_UTR | 75255544 | 75255652 | 75255544 | ID=Msa0572350-mRNA-1:five_prime_utr;Parent=Msa0572350-mRNA-1 |
| chr4_1 | CDS | 75255253 | 75255543 | 75255253 | ID=Msa0572350-mRNA-1:cds;Parent=Msa0572350-mRNA-1 |
| chr4_1 | CDS | 75255012 | 75255175 | 75255012 | ID=Msa0572350-mRNA-1:cds;Parent=Msa0572350-mRNA-1 |
| chr4_1 | CDS | 75254820 | 75254922 | 75254820 | ID=Msa0572350-mRNA-1:cds;Parent=Msa0572350-mRNA-1 |
| chr4_1 | CDS | 75254612 | 75254728 | 75254612 | ID=Msa0572350-mRNA-1:cds;Parent=Msa0572350-mRNA-1 |
| chr4_1 | CDS | 75254353 | 75254523 | 75254353 | ID=Msa0572350-mRNA-1:cds;Parent=Msa0572350-mRNA-1 |
| chr4_1 | CDS | 75253709 | 75253832 | 75253709 | ID=Msa0572350-mRNA-1:cds;Parent=Msa0572350-mRNA-1 |
| chr4_1 | CDS | 75253477 | 75253631 | 75253477 | ID=Msa0572350-mRNA-1:cds;Parent=Msa0572350-mRNA-1 |
| chr4_1 | three_prime_UTR | 75253327 | 75253476 | 75253327 | ID=Msa0572350-mRNA-1:three_prime_utr;Parent=Msa0572350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
