AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0570770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0570770 MtrunA17_Chr8g0385761 97.840 324 7 0 1 324 1 324 0.0 662
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0570770 AT4G25080.6 74.490 294 64 4 36 324 39 326 7.72e-157 442
Msa0570770 AT4G25080.2 74.490 294 64 4 36 324 25 312 1.09e-156 441
Msa0570770 AT4G25080.3 74.490 294 64 4 36 324 25 312 1.09e-156 441
Msa0570770 AT4G25080.5 74.490 294 64 4 36 324 25 312 1.09e-156 441
Msa0570770 AT4G25080.1 74.490 294 64 4 36 324 25 312 1.09e-156 441
Msa0570770 AT4G25080.4 78.486 251 48 2 74 324 1 245 5.15e-146 411

Find 127 sgRNAs with CRISPR-Local

Find 389 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTGCTCACCTTGCTTCTT+TGG 0.174968 4_1:+73129948 Msa0570770:CDS
TGTTCGCGTCGTCGTCTTTC+CGG 0.201498 4_1:-73128440 None:intergenic
AAGGCATCTAGTTTCAAATT+TGG 0.208296 4_1:-73130390 None:intergenic
GGATGATGAGAACGCCATTT+TGG 0.276616 4_1:-73128198 None:intergenic
GGTGAGTGATTTAGAGAGTT+TGG 0.296867 4_1:+73129855 Msa0570770:CDS
ATAGAGTTCAACGGGATATT+AGG 0.312977 4_1:+73128567 Msa0570770:CDS
CACTCAAATCAAAACCAAAA+TGG 0.325631 4_1:+73128184 Msa0570770:exon
TGTGATGCTGGTTGTGGTAC+TGG 0.330850 4_1:+73128665 Msa0570770:CDS
GAACACGCAATGATAATAAA+AGG 0.331642 4_1:-73130456 None:intergenic
GGCGATTGTTGTGCCGTCTA+TGG 0.335739 4_1:-73128363 None:intergenic
AAGTAGGACCCACGAGAATC+AGG 0.337401 4_1:+73128088 Msa0570770:five_prime_UTR
GCATCATAATAAAATGTCTT+AGG 0.351793 4_1:-73130000 None:intergenic
CAACGATGGAAGAAGATTTA+CGG 0.365499 4_1:+73128527 Msa0570770:CDS
GAAAGATGAAGGGTCACTTC+AGG 0.371450 4_1:+73128631 Msa0570770:CDS
AGGGTTGGAGAGTTGTTCCC+TGG 0.372856 4_1:+73130030 Msa0570770:CDS
GTTCGCGTCGTCGTCTTTCC+GGG 0.385307 4_1:-73128439 None:intergenic
GGAAAGACGACGACGCGAAC+AGG 0.395017 4_1:+73128442 Msa0570770:CDS
GGAATATAATATACATATCC+AGG 0.395360 4_1:-73130305 None:intergenic
ATACATATCCAGGGGATCAT+AGG 0.401558 4_1:-73130295 None:intergenic
GCAACAGCCGCCGACGTTAC+CGG 0.402705 4_1:+73128338 Msa0570770:CDS
GATTTGAGTGAGAGTGAGTT+GGG 0.404187 4_1:-73128171 None:intergenic
GTTCAACGGGATATTAGGTT+GGG 0.411793 4_1:+73128572 Msa0570770:CDS
AAAGGGCGCTGCGCAAGGTT+GGG 0.412949 4_1:+73130100 Msa0570770:CDS
GGTGTTACTATTTGTGATGC+TGG 0.416395 4_1:+73128653 Msa0570770:CDS
GGTTGCTGAAGCTGAGAAAC+AGG 0.419084 4_1:+73128754 Msa0570770:CDS
CTAAGCGGTGGCTTCGTCGC+TGG 0.422006 4_1:+73128389 Msa0570770:CDS
TGATTTGAGTGAGAGTGAGT+TGG 0.427056 4_1:-73128172 None:intergenic
TAAGAGTTTGTTGTGGGTGG+CGG 0.431253 4_1:-73128282 None:intergenic
GAAAGGGCGCTGCGCAAGGT+TGG 0.443632 4_1:+73130099 Msa0570770:CDS
CAACTTGTGTCCAGTGAGAA+TGG 0.444053 4_1:+73129805 Msa0570770:CDS
GAATGCTATCTTATCTTTCG+TGG 0.450799 4_1:+73128127 Msa0570770:five_prime_UTR
TGTTTGTGCTAGTGATATAT+CGG 0.451831 4_1:+73128724 Msa0570770:CDS
AAATCACTCACCACAAACTT+TGG 0.452354 4_1:-73129844 None:intergenic
CTGGGCCTTCCAAGGCAACC+AGG 0.466683 4_1:+73130049 Msa0570770:CDS
TGATGTTAATAGAGTTCAAC+GGG 0.468337 4_1:+73128559 Msa0570770:CDS
ACTATTTGTGATGCTGGTTG+TGG 0.469095 4_1:+73128659 Msa0570770:CDS
GCGGCTGTTGCGGTTGATAG+TGG 0.472009 4_1:-73128326 None:intergenic
CTGGTTGCCTTGGAAGGCCC+AGG 0.472074 4_1:-73130048 None:intergenic
CAAAGCATTCTCAACAGTCT+TGG 0.472384 4_1:-73128600 None:intergenic
AGTGATTTAGAGAGTTTGGA+TGG 0.476634 4_1:+73129859 Msa0570770:CDS
AAGAAGGAAGTTTGAAAAGT+AGG 0.478009 4_1:+73128072 None:intergenic
GGGAGTATTTCAACAACAAC+GGG 0.479355 4_1:+73128501 Msa0570770:CDS
GTCGTCTTTCCGGGTCTGAA+AGG 0.481970 4_1:-73128430 None:intergenic
AAGAGTTTGTTGTGGGTGGC+GGG 0.483942 4_1:-73128281 None:intergenic
GGTTGTTAAGAGTTTGTTGT+GGG 0.485748 4_1:-73128288 None:intergenic
TTACTTTGCCAAGCTTATTG+AGG 0.499395 4_1:+73130161 Msa0570770:CDS
TTCTGAAGCAGATGTTGAAA+GGG 0.501417 4_1:+73130083 Msa0570770:CDS
TCGTCTTTCCGGGTCTGAAA+GGG 0.501629 4_1:-73128429 None:intergenic
ACCACAAACTTTGGCATCGC+AGG 0.503004 4_1:-73129835 None:intergenic
AAGATATGCCCTGGTTGCCT+TGG 0.503839 4_1:-73130058 None:intergenic
AGTTCAACGGGATATTAGGT+TGG 0.504390 4_1:+73128571 Msa0570770:CDS
AAAGATGAAGGGTCACTTCA+GGG 0.505031 4_1:+73128632 Msa0570770:CDS
AAACTTACCTCTGAATCCTC+TGG 0.506783 4_1:-73130203 None:intergenic
TCGATTCCGTTGGCGAAGGA+AGG 0.509084 4_1:+73128695 Msa0570770:CDS
ACGACGACGCGAACAGGCGG+AGG 0.509203 4_1:+73128448 Msa0570770:CDS
CAGCGACGAAGCCACCGCTT+AGG 0.510626 4_1:-73128388 None:intergenic
ACCTGCGATGCCAAAGTTTG+TGG 0.512251 4_1:+73129834 Msa0570770:CDS
TATGATGCACTGAAGAGGGT+TGG 0.514859 4_1:+73130015 Msa0570770:CDS
GGTAACGTCGGCGGCTGTTG+CGG 0.517328 4_1:-73128336 None:intergenic
TTGCAGATGTTGAAAGATGA+AGG 0.518012 4_1:+73128620 Msa0570770:CDS
ATTCTGAAGCAGATGTTGAA+AGG 0.518414 4_1:+73130082 Msa0570770:CDS
TAGCAAAATAAATATAATCA+AGG 0.518521 4_1:-73130409 None:intergenic
CAGCATCGTTTACGCTAAGA+AGG 0.521198 4_1:-73130326 None:intergenic
TATGCCCTGGTTGCCTTGGA+AGG 0.522393 4_1:-73130054 None:intergenic
TGGTTCTCTTTCGATTCCGT+TGG 0.522603 4_1:+73128685 Msa0570770:CDS
ACTTCTCTCCCTTTCAGACC+CGG 0.523310 4_1:+73128421 Msa0570770:CDS
TCTTTCGATTCCGTTGGCGA+AGG 0.532526 4_1:+73128691 Msa0570770:CDS
GTTGTTCCCTGGGCCTTCCA+AGG 0.535217 4_1:+73130041 Msa0570770:CDS
GGGCGCTGCGCAAGGTTGGG+TGG 0.537359 4_1:+73130103 Msa0570770:CDS
GTCTATGGCGCCGGTAACGT+CGG 0.538591 4_1:-73128348 None:intergenic
CGCGAACAGGCGGAGGAAGT+AGG 0.545859 4_1:+73128455 Msa0570770:CDS
TCCCATCTGCTTTACTCTGA+GGG 0.551667 4_1:-73129924 None:intergenic
TTTCTCAGCTTCAGCAACCA+TGG 0.556058 4_1:-73128750 None:intergenic
GCTGTTGCGGTTGATAGTGG+AGG 0.558638 4_1:-73128323 None:intergenic
GGGTTGGAGAGTTGTTCCCT+GGG 0.560240 4_1:+73130031 Msa0570770:CDS
AGGAACAGCCTCAATAAGCT+TGG 0.560754 4_1:-73130169 None:intergenic
GGCAGAAAATTCATCACCCA+AGG 0.565337 4_1:-73130435 None:intergenic
TTTATTATGATGCACTGAAG+AGG 0.566266 4_1:+73130010 Msa0570770:CDS
AGTAGGACCCACGAGAATCA+GGG 0.566735 4_1:+73128089 Msa0570770:five_prime_UTR
GACGAAGCCACCGCTTAGGA+CGG 0.566784 4_1:-73128384 None:intergenic
TTATTATGATGCACTGAAGA+GGG 0.567580 4_1:+73130011 Msa0570770:CDS
TGTTGAAAGGGCGCTGCGCA+AGG 0.569434 4_1:+73130095 Msa0570770:CDS
AAGACGACGACGCGAACAGG+CGG 0.569936 4_1:+73128445 Msa0570770:CDS
TGGTTGCCTTGGAAGGCCCA+GGG 0.570031 4_1:-73130047 None:intergenic
TGTTGTGCCGTCTATGGCGC+CGG 0.571715 4_1:-73128357 None:intergenic
TGGGCCTTCCAAGGCAACCA+GGG 0.571898 4_1:+73130050 Msa0570770:CDS
TGGTTGTTAAGAGTTTGTTG+TGG 0.572241 4_1:-73128289 None:intergenic
GACGTTACCGGCGCCATAGA+CGG 0.574011 4_1:+73128350 Msa0570770:CDS
ACAACAACGGGTTTCAACGA+TGG 0.574622 4_1:+73128513 Msa0570770:CDS
TGTTAAGAGTTTGTTGTGGG+TGG 0.574727 4_1:-73128285 None:intergenic
TATGTTATCCTATGATCCCC+TGG 0.581885 4_1:+73130287 Msa0570770:three_prime_UTR
TAGTGGAGGGATGGCGAATG+TGG 0.586906 4_1:-73128309 None:intergenic
AGGTGACACTCCATTCTCAC+TGG 0.588285 4_1:-73129815 None:intergenic
TTCAACGGGATATTAGGTTG+GGG 0.592203 4_1:+73128573 Msa0570770:CDS
TACCCTCAGAGTAAAGCAGA+TGG 0.593009 4_1:+73129922 Msa0570770:CDS
ATCCCATCTGCTTTACTCTG+AGG 0.595461 4_1:-73129925 None:intergenic
CGGGAGAGAATGTAGCGAAA+CGG 0.601139 4_1:-73128262 None:intergenic
AGTGAGTCCAGAGGATTCAG+AGG 0.601420 4_1:+73130196 Msa0570770:exon
TGCAGATGTTGAAAGATGAA+GGG 0.606359 4_1:+73128621 Msa0570770:CDS
GAATATAATATACATATCCA+GGG 0.609774 4_1:-73130304 None:intergenic
TAGTGATATATCGGCTGCCA+TGG 0.613169 4_1:+73128733 Msa0570770:CDS
GGGTGGACGATAAAGAAGAA+AGG 0.614466 4_1:+73130120 Msa0570770:CDS
TATGGCGCCGGTAACGTCGG+CGG 0.621518 4_1:-73128345 None:intergenic
ACGAGAATCAGGGAAAAGCA+TGG 0.621841 4_1:+73128099 Msa0570770:five_prime_UTR
TGCGGTTGATAGTGGAGGGA+TGG 0.621933 4_1:-73128318 None:intergenic
ACGGCACCTTCCTTCGCCAA+CGG 0.623201 4_1:-73128701 None:intergenic
AGGGAGTATTTCAACAACAA+CGG 0.626963 4_1:+73128500 Msa0570770:CDS
ACCCTCAGAGTAAAGCAGAT+GGG 0.629699 4_1:+73129923 Msa0570770:CDS
GTGATGACAAAGAAGTTGTG+AGG 0.636702 4_1:+73128480 Msa0570770:CDS
AACAAAGAGAGAAGACCACA+TGG 0.638571 4_1:-73128219 None:intergenic
ATGATGTTAATAGAGTTCAA+CGG 0.639280 4_1:+73128558 Msa0570770:CDS
TTCAGAATGAAGATATGCCC+TGG 0.639551 4_1:-73130067 None:intergenic
TGATGACAAAGAAGTTGTGA+GGG 0.644653 4_1:+73128481 Msa0570770:CDS
ACAATCGCCGTCCTAAGCGG+TGG 0.658662 4_1:+73128377 Msa0570770:CDS
ATCCTCTGGACTCACTACAT+AGG 0.659752 4_1:-73130189 None:intergenic
ACAACAATCGCCGTCCTAAG+CGG 0.660502 4_1:+73128374 Msa0570770:CDS
AATGGCTTACAATATACACT+AGG 0.665867 4_1:-73130245 None:intergenic
CTGTTGCGGTTGATAGTGGA+GGG 0.666826 4_1:-73128322 None:intergenic
GTCTGAAAGGGAGAGAAGTG+CGG 0.675558 4_1:-73128417 None:intergenic
GGATGGATTGTACGATACAG+TGG 0.678861 4_1:+73129876 Msa0570770:CDS
GAACAGGCGGAGGAAGTAGG+CGG 0.681114 4_1:+73128458 Msa0570770:CDS
TATATCACTAGCACAAACAA+CGG 0.686870 4_1:-73128720 None:intergenic
TTCCTATGTAGTGAGTCCAG+AGG 0.689702 4_1:+73130187 Msa0570770:exon
AATATAATATACATATCCAG+GGG 0.707394 4_1:-73130303 None:intergenic
TGGCGTTCTCATCATCCATG+TGG 0.707884 4_1:+73128204 Msa0570770:CDS
AAAGGGAGAGAAGTGCGGTG+AGG 0.719705 4_1:-73128412 None:intergenic
GGTAATGAATCATAACATCG+AGG 0.752533 4_1:-73129903 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTGTAATATGTAA+CGG + chr4_1:73130359-73130378 Msa0570770:three_prime_UTR 10.0%
!!! TTTTATTTTGTAATATGTAA+CGG + chr4_1:73130359-73130378 Msa0570770:three_prime_UTR 10.0%
!! TTATATAAATAGGAAGATTA+TGG + chr4_1:73129251-73129270 Msa0570770:intron 15.0%
!! TAGCAAAATAAATATAATCA+AGG - chr4_1:73130412-73130431 None:intergenic 15.0%
!! TTATATAAATAGGAAGATTA+TGG + chr4_1:73129251-73129270 Msa0570770:intron 15.0%
!! TAGCAAAATAAATATAATCA+AGG - chr4_1:73130412-73130431 None:intergenic 15.0%
!!! ATTTTATCCTATCTAAGTTT+TGG - chr4_1:73128922-73128941 None:intergenic 20.0%
!! AGAGAAGGATTTATATAAAT+AGG + chr4_1:73129241-73129260 Msa0570770:intron 20.0%
!! TAAAGAAAATAAGAAAGAAC+AGG - chr4_1:73129394-73129413 None:intergenic 20.0%
!! GACAATAATAATGTAATCAT+TGG + chr4_1:73129603-73129622 Msa0570770:intron 20.0%
!! AATATAATATACATATCCAG+GGG - chr4_1:73130306-73130325 None:intergenic 20.0%
!! GAATATAATATACATATCCA+GGG - chr4_1:73130307-73130326 None:intergenic 20.0%
!!! ATTTTATCCTATCTAAGTTT+TGG - chr4_1:73128922-73128941 None:intergenic 20.0%
!! AGAGAAGGATTTATATAAAT+AGG + chr4_1:73129241-73129260 Msa0570770:intron 20.0%
!! TAAAGAAAATAAGAAAGAAC+AGG - chr4_1:73129394-73129413 None:intergenic 20.0%
!! GACAATAATAATGTAATCAT+TGG + chr4_1:73129603-73129622 Msa0570770:intron 20.0%
!! AATATAATATACATATCCAG+GGG - chr4_1:73130306-73130325 None:intergenic 20.0%
!! GAATATAATATACATATCCA+GGG - chr4_1:73130307-73130326 None:intergenic 20.0%
! ATGATGTTAATAGAGTTCAA+CGG + chr4_1:73128558-73128577 Msa0570770:CDS 25.0%
!!! TAAGTTGTTTTTGTTAGAGA+AGG + chr4_1:73129226-73129245 Msa0570770:intron 25.0%
! TTATTGTCAGACATTGTAAA+AGG - chr4_1:73129591-73129610 None:intergenic 25.0%
!!! GTTTTGAATGAATTTGACTT+TGG - chr4_1:73129710-73129729 None:intergenic 25.0%
! GCATCATAATAAAATGTCTT+AGG - chr4_1:73130003-73130022 None:intergenic 25.0%
!! CATACAAAAGCACAAAAAAA+TGG - chr4_1:73130266-73130285 None:intergenic 25.0%
! GGAATATAATATACATATCC+AGG - chr4_1:73130308-73130327 None:intergenic 25.0%
!!! TATTTATTTTGCTACTTCCT+TGG + chr4_1:73130418-73130437 Msa0570770:three_prime_UTR 25.0%
!!! ATTTATTTTGCTACTTCCTT+GGG + chr4_1:73130419-73130438 Msa0570770:three_prime_UTR 25.0%
! ATGATGTTAATAGAGTTCAA+CGG + chr4_1:73128558-73128577 Msa0570770:CDS 25.0%
!!! TAAGTTGTTTTTGTTAGAGA+AGG + chr4_1:73129226-73129245 Msa0570770:intron 25.0%
! TTATTGTCAGACATTGTAAA+AGG - chr4_1:73129591-73129610 None:intergenic 25.0%
!!! GTTTTGAATGAATTTGACTT+TGG - chr4_1:73129710-73129729 None:intergenic 25.0%
! GCATCATAATAAAATGTCTT+AGG - chr4_1:73130003-73130022 None:intergenic 25.0%
!! CATACAAAAGCACAAAAAAA+TGG - chr4_1:73130266-73130285 None:intergenic 25.0%
! GGAATATAATATACATATCC+AGG - chr4_1:73130308-73130327 None:intergenic 25.0%
!!! TATTTATTTTGCTACTTCCT+TGG + chr4_1:73130418-73130437 Msa0570770:three_prime_UTR 25.0%
!!! ATTTATTTTGCTACTTCCTT+GGG + chr4_1:73130419-73130438 Msa0570770:three_prime_UTR 25.0%
CACTCAAATCAAAACCAAAA+TGG + chr4_1:73128184-73128203 Msa0570770:exon 30.0%
TGATGTTAATAGAGTTCAAC+GGG + chr4_1:73128559-73128578 Msa0570770:CDS 30.0%
TATATCACTAGCACAAACAA+CGG - chr4_1:73128723-73128742 None:intergenic 30.0%
TGTTTGTGCTAGTGATATAT+CGG + chr4_1:73128724-73128743 Msa0570770:CDS 30.0%
CTAAAATAACGCTTCACATA+CGG - chr4_1:73128868-73128887 None:intergenic 30.0%
! ATTGACTCCAAAACTTAGAT+AGG + chr4_1:73128912-73128931 Msa0570770:intron 30.0%
!!! AAACTCATTTTGAAGTGGAA+GGG + chr4_1:73129064-73129083 Msa0570770:intron 30.0%
CAATTGATGTTTGTAAACGT+CGG - chr4_1:73129137-73129156 None:intergenic 30.0%
ATCATGTTAGAGGTTAGAAT+AGG + chr4_1:73129187-73129206 Msa0570770:intron 30.0%
TCATGTTAGAGGTTAGAATA+GGG + chr4_1:73129188-73129207 Msa0570770:intron 30.0%
!!! CTTTTTTTTTAGGGGAATAG+AGG - chr4_1:73129326-73129345 None:intergenic 30.0%
!!! AGTCGCAACTTTTTTTTTAG+GGG - chr4_1:73129334-73129353 None:intergenic 30.0%
!!! GAGTCGCAACTTTTTTTTTA+GGG - chr4_1:73129335-73129354 None:intergenic 30.0%
!!! AGAGTCGCAACTTTTTTTTT+AGG - chr4_1:73129336-73129355 None:intergenic 30.0%
TTCTGTTCCATTCAATTCTT+AGG + chr4_1:73129426-73129445 Msa0570770:intron 30.0%
!!! TCGATAAAAAGTGTTTTGGT+AGG - chr4_1:73129472-73129491 None:intergenic 30.0%
!!! TGCTTCGATAAAAAGTGTTT+TGG - chr4_1:73129476-73129495 None:intergenic 30.0%
GTCATGCGTCAAATTTAATA+GGG - chr4_1:73129523-73129542 None:intergenic 30.0%
TTCAAACACACAAACTAACA+CGG + chr4_1:73129750-73129769 Msa0570770:intron 30.0%
TTTATTATGATGCACTGAAG+AGG + chr4_1:73130010-73130029 Msa0570770:CDS 30.0%
TTATTATGATGCACTGAAGA+GGG + chr4_1:73130011-73130030 Msa0570770:CDS 30.0%
AATGGCTTACAATATACACT+AGG - chr4_1:73130248-73130267 None:intergenic 30.0%
! AAGGCATCTAGTTTCAAATT+TGG - chr4_1:73130393-73130412 None:intergenic 30.0%
CACTCAAATCAAAACCAAAA+TGG + chr4_1:73128184-73128203 Msa0570770:exon 30.0%
TGATGTTAATAGAGTTCAAC+GGG + chr4_1:73128559-73128578 Msa0570770:CDS 30.0%
TATATCACTAGCACAAACAA+CGG - chr4_1:73128723-73128742 None:intergenic 30.0%
TGTTTGTGCTAGTGATATAT+CGG + chr4_1:73128724-73128743 Msa0570770:CDS 30.0%
CTAAAATAACGCTTCACATA+CGG - chr4_1:73128868-73128887 None:intergenic 30.0%
! ATTGACTCCAAAACTTAGAT+AGG + chr4_1:73128912-73128931 Msa0570770:intron 30.0%
!!! AAACTCATTTTGAAGTGGAA+GGG + chr4_1:73129064-73129083 Msa0570770:intron 30.0%
CAATTGATGTTTGTAAACGT+CGG - chr4_1:73129137-73129156 None:intergenic 30.0%
ATCATGTTAGAGGTTAGAAT+AGG + chr4_1:73129187-73129206 Msa0570770:intron 30.0%
TCATGTTAGAGGTTAGAATA+GGG + chr4_1:73129188-73129207 Msa0570770:intron 30.0%
!!! CTTTTTTTTTAGGGGAATAG+AGG - chr4_1:73129326-73129345 None:intergenic 30.0%
!!! AGTCGCAACTTTTTTTTTAG+GGG - chr4_1:73129334-73129353 None:intergenic 30.0%
!!! GAGTCGCAACTTTTTTTTTA+GGG - chr4_1:73129335-73129354 None:intergenic 30.0%
!!! AGAGTCGCAACTTTTTTTTT+AGG - chr4_1:73129336-73129355 None:intergenic 30.0%
TTCTGTTCCATTCAATTCTT+AGG + chr4_1:73129426-73129445 Msa0570770:intron 30.0%
!!! TCGATAAAAAGTGTTTTGGT+AGG - chr4_1:73129472-73129491 None:intergenic 30.0%
!!! TGCTTCGATAAAAAGTGTTT+TGG - chr4_1:73129476-73129495 None:intergenic 30.0%
GTCATGCGTCAAATTTAATA+GGG - chr4_1:73129523-73129542 None:intergenic 30.0%
TTCAAACACACAAACTAACA+CGG + chr4_1:73129750-73129769 Msa0570770:intron 30.0%
TTTATTATGATGCACTGAAG+AGG + chr4_1:73130010-73130029 Msa0570770:CDS 30.0%
TTATTATGATGCACTGAAGA+GGG + chr4_1:73130011-73130030 Msa0570770:CDS 30.0%
AATGGCTTACAATATACACT+AGG - chr4_1:73130248-73130267 None:intergenic 30.0%
! AAGGCATCTAGTTTCAAATT+TGG - chr4_1:73130393-73130412 None:intergenic 30.0%
GAATGCTATCTTATCTTTCG+TGG + chr4_1:73128127-73128146 Msa0570770:five_prime_UTR 35.0%
!!! CGAAACGGTTAGTTTTGTTT+GGG - chr4_1:73128250-73128269 None:intergenic 35.0%
!! GGTTGTTAAGAGTTTGTTGT+GGG - chr4_1:73128291-73128310 None:intergenic 35.0%
!! TGGTTGTTAAGAGTTTGTTG+TGG - chr4_1:73128292-73128311 None:intergenic 35.0%
TGATGACAAAGAAGTTGTGA+GGG + chr4_1:73128481-73128500 Msa0570770:CDS 35.0%
!! AGGGAGTATTTCAACAACAA+CGG + chr4_1:73128500-73128519 Msa0570770:CDS 35.0%
CAACGATGGAAGAAGATTTA+CGG + chr4_1:73128527-73128546 Msa0570770:CDS 35.0%
ATAGAGTTCAACGGGATATT+AGG + chr4_1:73128567-73128586 Msa0570770:CDS 35.0%
TTGCAGATGTTGAAAGATGA+AGG + chr4_1:73128620-73128639 Msa0570770:CDS 35.0%
TGCAGATGTTGAAAGATGAA+GGG + chr4_1:73128621-73128640 Msa0570770:CDS 35.0%
ATAGCTGTTATTCGACAACA+CGG + chr4_1:73128959-73128978 Msa0570770:intron 35.0%
!! GCTTGAAACTCATTTTGAAG+TGG + chr4_1:73129059-73129078 Msa0570770:intron 35.0%
!!! GAAACTCATTTTGAAGTGGA+AGG + chr4_1:73129063-73129082 Msa0570770:intron 35.0%
! TGTGTTAGGAAGCACAATTA+CGG - chr4_1:73129168-73129187 None:intergenic 35.0%
TTCCTAACACATCATGTTAG+AGG + chr4_1:73129177-73129196 Msa0570770:intron 35.0%
AACCTCTAACATGATGTGTT+AGG - chr4_1:73129182-73129201 None:intergenic 35.0%
TTAGGGACCTAAGAATTGAA+TGG - chr4_1:73129436-73129455 None:intergenic 35.0%
GGTCATGCGTCAAATTTAAT+AGG - chr4_1:73129524-73129543 None:intergenic 35.0%
GAAACCTTAGAGACCAAATT+TGG + chr4_1:73129549-73129568 Msa0570770:intron 35.0%
AAATCACTCACCACAAACTT+TGG - chr4_1:73129847-73129866 None:intergenic 35.0%
AGTGATTTAGAGAGTTTGGA+TGG + chr4_1:73129859-73129878 Msa0570770:CDS 35.0%
GGTAATGAATCATAACATCG+AGG - chr4_1:73129906-73129925 None:intergenic 35.0%
!! ATTCTGAAGCAGATGTTGAA+AGG + chr4_1:73130082-73130101 Msa0570770:CDS 35.0%
!! TTCTGAAGCAGATGTTGAAA+GGG + chr4_1:73130083-73130102 Msa0570770:CDS 35.0%
TTACTTTGCCAAGCTTATTG+AGG + chr4_1:73130161-73130180 Msa0570770:CDS 35.0%
! GGTAAGTTTTGCATCATTAG+AGG + chr4_1:73130217-73130236 Msa0570770:three_prime_UTR 35.0%
! TGCCTTTTATTATCATTGCG+TGG + chr4_1:73130454-73130473 Msa0570770:three_prime_UTR 35.0%
GAATGCTATCTTATCTTTCG+TGG + chr4_1:73128127-73128146 Msa0570770:five_prime_UTR 35.0%
!!! CGAAACGGTTAGTTTTGTTT+GGG - chr4_1:73128250-73128269 None:intergenic 35.0%
!! GGTTGTTAAGAGTTTGTTGT+GGG - chr4_1:73128291-73128310 None:intergenic 35.0%
!! TGGTTGTTAAGAGTTTGTTG+TGG - chr4_1:73128292-73128311 None:intergenic 35.0%
TGATGACAAAGAAGTTGTGA+GGG + chr4_1:73128481-73128500 Msa0570770:CDS 35.0%
!! AGGGAGTATTTCAACAACAA+CGG + chr4_1:73128500-73128519 Msa0570770:CDS 35.0%
CAACGATGGAAGAAGATTTA+CGG + chr4_1:73128527-73128546 Msa0570770:CDS 35.0%
ATAGAGTTCAACGGGATATT+AGG + chr4_1:73128567-73128586 Msa0570770:CDS 35.0%
TTGCAGATGTTGAAAGATGA+AGG + chr4_1:73128620-73128639 Msa0570770:CDS 35.0%
TGCAGATGTTGAAAGATGAA+GGG + chr4_1:73128621-73128640 Msa0570770:CDS 35.0%
ATAGCTGTTATTCGACAACA+CGG + chr4_1:73128959-73128978 Msa0570770:intron 35.0%
!! GCTTGAAACTCATTTTGAAG+TGG + chr4_1:73129059-73129078 Msa0570770:intron 35.0%
!!! GAAACTCATTTTGAAGTGGA+AGG + chr4_1:73129063-73129082 Msa0570770:intron 35.0%
! TGTGTTAGGAAGCACAATTA+CGG - chr4_1:73129168-73129187 None:intergenic 35.0%
TTCCTAACACATCATGTTAG+AGG + chr4_1:73129177-73129196 Msa0570770:intron 35.0%
AACCTCTAACATGATGTGTT+AGG - chr4_1:73129182-73129201 None:intergenic 35.0%
TTAGGGACCTAAGAATTGAA+TGG - chr4_1:73129436-73129455 None:intergenic 35.0%
GGTCATGCGTCAAATTTAAT+AGG - chr4_1:73129524-73129543 None:intergenic 35.0%
GAAACCTTAGAGACCAAATT+TGG + chr4_1:73129549-73129568 Msa0570770:intron 35.0%
AAATCACTCACCACAAACTT+TGG - chr4_1:73129847-73129866 None:intergenic 35.0%
AGTGATTTAGAGAGTTTGGA+TGG + chr4_1:73129859-73129878 Msa0570770:CDS 35.0%
GGTAATGAATCATAACATCG+AGG - chr4_1:73129906-73129925 None:intergenic 35.0%
!! ATTCTGAAGCAGATGTTGAA+AGG + chr4_1:73130082-73130101 Msa0570770:CDS 35.0%
!! TTCTGAAGCAGATGTTGAAA+GGG + chr4_1:73130083-73130102 Msa0570770:CDS 35.0%
TTACTTTGCCAAGCTTATTG+AGG + chr4_1:73130161-73130180 Msa0570770:CDS 35.0%
! GGTAAGTTTTGCATCATTAG+AGG + chr4_1:73130217-73130236 Msa0570770:three_prime_UTR 35.0%
GATTTGAGTGAGAGTGAGTT+GGG - chr4_1:73128174-73128193 None:intergenic 40.0%
TGATTTGAGTGAGAGTGAGT+TGG - chr4_1:73128175-73128194 None:intergenic 40.0%
AACAAAGAGAGAAGACCACA+TGG - chr4_1:73128222-73128241 None:intergenic 40.0%
!!! CGGTTAGTTTTGTTTGGGTT+TGG - chr4_1:73128245-73128264 None:intergenic 40.0%
!!! GCGAAACGGTTAGTTTTGTT+TGG - chr4_1:73128251-73128270 None:intergenic 40.0%
!! TGTTAAGAGTTTGTTGTGGG+TGG - chr4_1:73128288-73128307 None:intergenic 40.0%
GTGATGACAAAGAAGTTGTG+AGG + chr4_1:73128480-73128499 Msa0570770:CDS 40.0%
!! GGGAGTATTTCAACAACAAC+GGG + chr4_1:73128501-73128520 Msa0570770:CDS 40.0%
AGTTCAACGGGATATTAGGT+TGG + chr4_1:73128571-73128590 Msa0570770:CDS 40.0%
GTTCAACGGGATATTAGGTT+GGG + chr4_1:73128572-73128591 Msa0570770:CDS 40.0%
! TTCAACGGGATATTAGGTTG+GGG + chr4_1:73128573-73128592 Msa0570770:CDS 40.0%
! CAAAGCATTCTCAACAGTCT+TGG - chr4_1:73128603-73128622 None:intergenic 40.0%
AAAGATGAAGGGTCACTTCA+GGG + chr4_1:73128632-73128651 Msa0570770:CDS 40.0%
!! GGTGTTACTATTTGTGATGC+TGG + chr4_1:73128653-73128672 Msa0570770:CDS 40.0%
! ACTATTTGTGATGCTGGTTG+TGG + chr4_1:73128659-73128678 Msa0570770:CDS 40.0%
TAGGAAGATTATGGAGTCAG+AGG + chr4_1:73129260-73129279 Msa0570770:intron 40.0%
TTGCGAAAGGGAAACCTTTA+AGG + chr4_1:73129357-73129376 Msa0570770:intron 40.0%
TGCGAAAGGGAAACCTTTAA+GGG + chr4_1:73129358-73129377 Msa0570770:intron 40.0%
! AAGTGTGTTTTGCACTTTGC+AGG + chr4_1:73129774-73129793 Msa0570770:intron 40.0%
GGTGAGTGATTTAGAGAGTT+TGG + chr4_1:73129855-73129874 Msa0570770:CDS 40.0%
TTCAGAATGAAGATATGCCC+TGG - chr4_1:73130070-73130089 None:intergenic 40.0%
AAACTTACCTCTGAATCCTC+TGG - chr4_1:73130206-73130225 None:intergenic 40.0%
TATGTTATCCTATGATCCCC+TGG + chr4_1:73130287-73130306 Msa0570770:three_prime_UTR 40.0%
ATACATATCCAGGGGATCAT+AGG - chr4_1:73130298-73130317 None:intergenic 40.0%
GATTTGAGTGAGAGTGAGTT+GGG - chr4_1:73128174-73128193 None:intergenic 40.0%
TGATTTGAGTGAGAGTGAGT+TGG - chr4_1:73128175-73128194 None:intergenic 40.0%
AACAAAGAGAGAAGACCACA+TGG - chr4_1:73128222-73128241 None:intergenic 40.0%
!!! CGGTTAGTTTTGTTTGGGTT+TGG - chr4_1:73128245-73128264 None:intergenic 40.0%
!!! GCGAAACGGTTAGTTTTGTT+TGG - chr4_1:73128251-73128270 None:intergenic 40.0%
!! TGTTAAGAGTTTGTTGTGGG+TGG - chr4_1:73128288-73128307 None:intergenic 40.0%
GTGATGACAAAGAAGTTGTG+AGG + chr4_1:73128480-73128499 Msa0570770:CDS 40.0%
!! GGGAGTATTTCAACAACAAC+GGG + chr4_1:73128501-73128520 Msa0570770:CDS 40.0%
AGTTCAACGGGATATTAGGT+TGG + chr4_1:73128571-73128590 Msa0570770:CDS 40.0%
GTTCAACGGGATATTAGGTT+GGG + chr4_1:73128572-73128591 Msa0570770:CDS 40.0%
! TTCAACGGGATATTAGGTTG+GGG + chr4_1:73128573-73128592 Msa0570770:CDS 40.0%
! CAAAGCATTCTCAACAGTCT+TGG - chr4_1:73128603-73128622 None:intergenic 40.0%
AAAGATGAAGGGTCACTTCA+GGG + chr4_1:73128632-73128651 Msa0570770:CDS 40.0%
!! GGTGTTACTATTTGTGATGC+TGG + chr4_1:73128653-73128672 Msa0570770:CDS 40.0%
! ACTATTTGTGATGCTGGTTG+TGG + chr4_1:73128659-73128678 Msa0570770:CDS 40.0%
TAGGAAGATTATGGAGTCAG+AGG + chr4_1:73129260-73129279 Msa0570770:intron 40.0%
TTGCGAAAGGGAAACCTTTA+AGG + chr4_1:73129357-73129376 Msa0570770:intron 40.0%
TGCGAAAGGGAAACCTTTAA+GGG + chr4_1:73129358-73129377 Msa0570770:intron 40.0%
! AAGTGTGTTTTGCACTTTGC+AGG + chr4_1:73129774-73129793 Msa0570770:intron 40.0%
GGTGAGTGATTTAGAGAGTT+TGG + chr4_1:73129855-73129874 Msa0570770:CDS 40.0%
TTCAGAATGAAGATATGCCC+TGG - chr4_1:73130070-73130089 None:intergenic 40.0%
AAACTTACCTCTGAATCCTC+TGG - chr4_1:73130206-73130225 None:intergenic 40.0%
TATGTTATCCTATGATCCCC+TGG + chr4_1:73130287-73130306 Msa0570770:three_prime_UTR 40.0%
ATACATATCCAGGGGATCAT+AGG - chr4_1:73130298-73130317 None:intergenic 40.0%
! TGCTTTTCCCTGATTCTCGT+GGG - chr4_1:73128099-73128118 None:intergenic 45.0%
! ATGCTTTTCCCTGATTCTCG+TGG - chr4_1:73128100-73128119 None:intergenic 45.0%
ACGAGAATCAGGGAAAAGCA+TGG + chr4_1:73128099-73128118 Msa0570770:five_prime_UTR 45.0%
! GGATGATGAGAACGCCATTT+TGG - chr4_1:73128201-73128220 None:intergenic 45.0%
!! TAAGAGTTTGTTGTGGGTGG+CGG - chr4_1:73128285-73128304 None:intergenic 45.0%
! ACAACAACGGGTTTCAACGA+TGG + chr4_1:73128513-73128532 Msa0570770:CDS 45.0%
GAAAGATGAAGGGTCACTTC+AGG + chr4_1:73128631-73128650 Msa0570770:CDS 45.0%
TGGTTCTCTTTCGATTCCGT+TGG + chr4_1:73128685-73128704 Msa0570770:CDS 45.0%
! TAGTGATATATCGGCTGCCA+TGG + chr4_1:73128733-73128752 Msa0570770:CDS 45.0%
TTTCTCAGCTTCAGCAACCA+TGG - chr4_1:73128753-73128772 None:intergenic 45.0%
CTGAAGCTGAGAAACAGGTT+AGG + chr4_1:73128759-73128778 Msa0570770:intron 45.0%
AGTTGCGACTCTATTGCGAA+AGG + chr4_1:73129344-73129363 Msa0570770:intron 45.0%
GTTGCGACTCTATTGCGAAA+GGG + chr4_1:73129345-73129364 Msa0570770:intron 45.0%
GCGAAAGGGAAACCTTTAAG+GGG + chr4_1:73129359-73129378 Msa0570770:intron 45.0%
AGGAGAGAATCTCCCCTTAA+AGG - chr4_1:73129374-73129393 None:intergenic 45.0%
TAGGCACGAATGGCATGTTA+GGG - chr4_1:73129453-73129472 None:intergenic 45.0%
!!! AGTGTTTTGGTAGGCACGAA+TGG - chr4_1:73129463-73129482 None:intergenic 45.0%
!! TGGTCTCTAAGGTTTCACTC+TGG - chr4_1:73129545-73129564 None:intergenic 45.0%
CCAGCCAAATTTGGTCTCTA+AGG - chr4_1:73129556-73129575 None:intergenic 45.0%
CCTTAGAGACCAAATTTGGC+TGG + chr4_1:73129553-73129572 Msa0570770:intron 45.0%
GAACACACACCAGCCAAATT+TGG - chr4_1:73129565-73129584 None:intergenic 45.0%
CTTTCAGGCTCAGAACTAAG+GGG - chr4_1:73129641-73129660 None:intergenic 45.0%
CCTTTCAGGCTCAGAACTAA+GGG - chr4_1:73129642-73129661 None:intergenic 45.0%
CAACTTGTGTCCAGTGAGAA+TGG + chr4_1:73129805-73129824 Msa0570770:CDS 45.0%
!! GGATGGATTGTACGATACAG+TGG + chr4_1:73129876-73129895 Msa0570770:CDS 45.0%
TACCCTCAGAGTAAAGCAGA+TGG + chr4_1:73129922-73129941 Msa0570770:CDS 45.0%
ACCCTCAGAGTAAAGCAGAT+GGG + chr4_1:73129923-73129942 Msa0570770:CDS 45.0%
TCCCATCTGCTTTACTCTGA+GGG - chr4_1:73129927-73129946 None:intergenic 45.0%
ATCCCATCTGCTTTACTCTG+AGG - chr4_1:73129928-73129947 None:intergenic 45.0%
GATTGCTCACCTTGCTTCTT+TGG + chr4_1:73129948-73129967 Msa0570770:CDS 45.0%
! GCTTTTCTGCCAAAGAAGCA+AGG - chr4_1:73129960-73129979 None:intergenic 45.0%
TATGATGCACTGAAGAGGGT+TGG + chr4_1:73130015-73130034 Msa0570770:CDS 45.0%
GGGTGGACGATAAAGAAGAA+AGG + chr4_1:73130120-73130139 Msa0570770:CDS 45.0%
AGGAACAGCCTCAATAAGCT+TGG - chr4_1:73130172-73130191 None:intergenic 45.0%
TTCCTATGTAGTGAGTCCAG+AGG + chr4_1:73130187-73130206 Msa0570770:exon 45.0%
ATCCTCTGGACTCACTACAT+AGG - chr4_1:73130192-73130211 None:intergenic 45.0%
CAGCATCGTTTACGCTAAGA+AGG - chr4_1:73130329-73130348 None:intergenic 45.0%
GGCAGAAAATTCATCACCCA+AGG - chr4_1:73130438-73130457 None:intergenic 45.0%
! TGCTTTTCCCTGATTCTCGT+GGG - chr4_1:73128099-73128118 None:intergenic 45.0%
! ATGCTTTTCCCTGATTCTCG+TGG - chr4_1:73128100-73128119 None:intergenic 45.0%
ACGAGAATCAGGGAAAAGCA+TGG + chr4_1:73128099-73128118 Msa0570770:five_prime_UTR 45.0%
! GGATGATGAGAACGCCATTT+TGG - chr4_1:73128201-73128220 None:intergenic 45.0%
!! TAAGAGTTTGTTGTGGGTGG+CGG - chr4_1:73128285-73128304 None:intergenic 45.0%
! ACAACAACGGGTTTCAACGA+TGG + chr4_1:73128513-73128532 Msa0570770:CDS 45.0%
GAAAGATGAAGGGTCACTTC+AGG + chr4_1:73128631-73128650 Msa0570770:CDS 45.0%
TGGTTCTCTTTCGATTCCGT+TGG + chr4_1:73128685-73128704 Msa0570770:CDS 45.0%
! TAGTGATATATCGGCTGCCA+TGG + chr4_1:73128733-73128752 Msa0570770:CDS 45.0%
TTTCTCAGCTTCAGCAACCA+TGG - chr4_1:73128753-73128772 None:intergenic 45.0%
CTGAAGCTGAGAAACAGGTT+AGG + chr4_1:73128759-73128778 Msa0570770:intron 45.0%
AGTTGCGACTCTATTGCGAA+AGG + chr4_1:73129344-73129363 Msa0570770:intron 45.0%
GTTGCGACTCTATTGCGAAA+GGG + chr4_1:73129345-73129364 Msa0570770:intron 45.0%
GCGAAAGGGAAACCTTTAAG+GGG + chr4_1:73129359-73129378 Msa0570770:intron 45.0%
AGGAGAGAATCTCCCCTTAA+AGG - chr4_1:73129374-73129393 None:intergenic 45.0%
TAGGCACGAATGGCATGTTA+GGG - chr4_1:73129453-73129472 None:intergenic 45.0%
!!! AGTGTTTTGGTAGGCACGAA+TGG - chr4_1:73129463-73129482 None:intergenic 45.0%
!! TGGTCTCTAAGGTTTCACTC+TGG - chr4_1:73129545-73129564 None:intergenic 45.0%
CCAGCCAAATTTGGTCTCTA+AGG - chr4_1:73129556-73129575 None:intergenic 45.0%
CCTTAGAGACCAAATTTGGC+TGG + chr4_1:73129553-73129572 Msa0570770:intron 45.0%
GAACACACACCAGCCAAATT+TGG - chr4_1:73129565-73129584 None:intergenic 45.0%
CTTTCAGGCTCAGAACTAAG+GGG - chr4_1:73129641-73129660 None:intergenic 45.0%
CCTTTCAGGCTCAGAACTAA+GGG - chr4_1:73129642-73129661 None:intergenic 45.0%
CAACTTGTGTCCAGTGAGAA+TGG + chr4_1:73129805-73129824 Msa0570770:CDS 45.0%
!! GGATGGATTGTACGATACAG+TGG + chr4_1:73129876-73129895 Msa0570770:CDS 45.0%
TACCCTCAGAGTAAAGCAGA+TGG + chr4_1:73129922-73129941 Msa0570770:CDS 45.0%
ACCCTCAGAGTAAAGCAGAT+GGG + chr4_1:73129923-73129942 Msa0570770:CDS 45.0%
TCCCATCTGCTTTACTCTGA+GGG - chr4_1:73129927-73129946 None:intergenic 45.0%
ATCCCATCTGCTTTACTCTG+AGG - chr4_1:73129928-73129947 None:intergenic 45.0%
GATTGCTCACCTTGCTTCTT+TGG + chr4_1:73129948-73129967 Msa0570770:CDS 45.0%
! GCTTTTCTGCCAAAGAAGCA+AGG - chr4_1:73129960-73129979 None:intergenic 45.0%
TATGATGCACTGAAGAGGGT+TGG + chr4_1:73130015-73130034 Msa0570770:CDS 45.0%
GGGTGGACGATAAAGAAGAA+AGG + chr4_1:73130120-73130139 Msa0570770:CDS 45.0%
AGGAACAGCCTCAATAAGCT+TGG - chr4_1:73130172-73130191 None:intergenic 45.0%
TTCCTATGTAGTGAGTCCAG+AGG + chr4_1:73130187-73130206 Msa0570770:exon 45.0%
ATCCTCTGGACTCACTACAT+AGG - chr4_1:73130192-73130211 None:intergenic 45.0%
CAGCATCGTTTACGCTAAGA+AGG - chr4_1:73130329-73130348 None:intergenic 45.0%
GGCAGAAAATTCATCACCCA+AGG - chr4_1:73130438-73130457 None:intergenic 45.0%
AAGTAGGACCCACGAGAATC+AGG + chr4_1:73128088-73128107 Msa0570770:five_prime_UTR 50.0%
AGTAGGACCCACGAGAATCA+GGG + chr4_1:73128089-73128108 Msa0570770:five_prime_UTR 50.0%
TGGCGTTCTCATCATCCATG+TGG + chr4_1:73128204-73128223 Msa0570770:CDS 50.0%
CGGGAGAGAATGTAGCGAAA+CGG - chr4_1:73128265-73128284 None:intergenic 50.0%
!! AAGAGTTTGTTGTGGGTGGC+GGG - chr4_1:73128284-73128303 None:intergenic 50.0%
!! CTGTTGCGGTTGATAGTGGA+GGG - chr4_1:73128325-73128344 None:intergenic 50.0%
ACAACAATCGCCGTCCTAAG+CGG + chr4_1:73128374-73128393 Msa0570770:CDS 50.0%
GTCTGAAAGGGAGAGAAGTG+CGG - chr4_1:73128420-73128439 None:intergenic 50.0%
ACTTCTCTCCCTTTCAGACC+CGG + chr4_1:73128421-73128440 Msa0570770:CDS 50.0%
TCGTCTTTCCGGGTCTGAAA+GGG - chr4_1:73128432-73128451 None:intergenic 50.0%
! TGTGATGCTGGTTGTGGTAC+TGG + chr4_1:73128665-73128684 Msa0570770:CDS 50.0%
TCTTTCGATTCCGTTGGCGA+AGG + chr4_1:73128691-73128710 Msa0570770:CDS 50.0%
GGTTGCTGAAGCTGAGAAAC+AGG + chr4_1:73128754-73128773 Msa0570770:CDS 50.0%
GTAGGCACGAATGGCATGTT+AGG - chr4_1:73129454-73129473 None:intergenic 50.0%
!! CCCTTAGTTCTGAGCCTGAA+AGG + chr4_1:73129639-73129658 Msa0570770:intron 50.0%
GCCTTTCAGGCTCAGAACTA+AGG - chr4_1:73129643-73129662 None:intergenic 50.0%
AAATACCCTGATCTTGCGCC+GGG - chr4_1:73129673-73129692 None:intergenic 50.0%
GAAATACCCTGATCTTGCGC+CGG - chr4_1:73129674-73129693 None:intergenic 50.0%
AGGTGACACTCCATTCTCAC+TGG - chr4_1:73129818-73129837 None:intergenic 50.0%
ACCTGCGATGCCAAAGTTTG+TGG + chr4_1:73129834-73129853 Msa0570770:CDS 50.0%
ACCACAAACTTTGGCATCGC+AGG - chr4_1:73129838-73129857 None:intergenic 50.0%
AAGATATGCCCTGGTTGCCT+TGG - chr4_1:73130061-73130080 None:intergenic 50.0%
AGTGAGTCCAGAGGATTCAG+AGG + chr4_1:73130196-73130215 Msa0570770:exon 50.0%
AAGTAGGACCCACGAGAATC+AGG + chr4_1:73128088-73128107 Msa0570770:five_prime_UTR 50.0%
AGTAGGACCCACGAGAATCA+GGG + chr4_1:73128089-73128108 Msa0570770:five_prime_UTR 50.0%
TGGCGTTCTCATCATCCATG+TGG + chr4_1:73128204-73128223 Msa0570770:CDS 50.0%
CGGGAGAGAATGTAGCGAAA+CGG - chr4_1:73128265-73128284 None:intergenic 50.0%
!! AAGAGTTTGTTGTGGGTGGC+GGG - chr4_1:73128284-73128303 None:intergenic 50.0%
!! CTGTTGCGGTTGATAGTGGA+GGG - chr4_1:73128325-73128344 None:intergenic 50.0%
ACAACAATCGCCGTCCTAAG+CGG + chr4_1:73128374-73128393 Msa0570770:CDS 50.0%
GTCTGAAAGGGAGAGAAGTG+CGG - chr4_1:73128420-73128439 None:intergenic 50.0%
ACTTCTCTCCCTTTCAGACC+CGG + chr4_1:73128421-73128440 Msa0570770:CDS 50.0%
TCGTCTTTCCGGGTCTGAAA+GGG - chr4_1:73128432-73128451 None:intergenic 50.0%
! TGTGATGCTGGTTGTGGTAC+TGG + chr4_1:73128665-73128684 Msa0570770:CDS 50.0%
TCTTTCGATTCCGTTGGCGA+AGG + chr4_1:73128691-73128710 Msa0570770:CDS 50.0%
GGTTGCTGAAGCTGAGAAAC+AGG + chr4_1:73128754-73128773 Msa0570770:CDS 50.0%
GTAGGCACGAATGGCATGTT+AGG - chr4_1:73129454-73129473 None:intergenic 50.0%
!! CCCTTAGTTCTGAGCCTGAA+AGG + chr4_1:73129639-73129658 Msa0570770:intron 50.0%
GCCTTTCAGGCTCAGAACTA+AGG - chr4_1:73129643-73129662 None:intergenic 50.0%
AAATACCCTGATCTTGCGCC+GGG - chr4_1:73129673-73129692 None:intergenic 50.0%
GAAATACCCTGATCTTGCGC+CGG - chr4_1:73129674-73129693 None:intergenic 50.0%
AGGTGACACTCCATTCTCAC+TGG - chr4_1:73129818-73129837 None:intergenic 50.0%
ACCTGCGATGCCAAAGTTTG+TGG + chr4_1:73129834-73129853 Msa0570770:CDS 50.0%
ACCACAAACTTTGGCATCGC+AGG - chr4_1:73129838-73129857 None:intergenic 50.0%
AAGATATGCCCTGGTTGCCT+TGG - chr4_1:73130061-73130080 None:intergenic 50.0%
AGTGAGTCCAGAGGATTCAG+AGG + chr4_1:73130196-73130215 Msa0570770:exon 50.0%
TAGTGGAGGGATGGCGAATG+TGG - chr4_1:73128312-73128331 None:intergenic 55.0%
!! TGCGGTTGATAGTGGAGGGA+TGG - chr4_1:73128321-73128340 None:intergenic 55.0%
!! GCTGTTGCGGTTGATAGTGG+AGG - chr4_1:73128326-73128345 None:intergenic 55.0%
GGCGATTGTTGTGCCGTCTA+TGG - chr4_1:73128366-73128385 None:intergenic 55.0%
! AAAGGGAGAGAAGTGCGGTG+AGG - chr4_1:73128415-73128434 None:intergenic 55.0%
GTCGTCTTTCCGGGTCTGAA+AGG - chr4_1:73128433-73128452 None:intergenic 55.0%
TGTTCGCGTCGTCGTCTTTC+CGG - chr4_1:73128443-73128462 None:intergenic 55.0%
TCGATTCCGTTGGCGAAGGA+AGG + chr4_1:73128695-73128714 Msa0570770:CDS 55.0%
AGGGTTGGAGAGTTGTTCCC+TGG + chr4_1:73130030-73130049 Msa0570770:CDS 55.0%
GGGTTGGAGAGTTGTTCCCT+GGG + chr4_1:73130031-73130050 Msa0570770:CDS 55.0%
TATGCCCTGGTTGCCTTGGA+AGG - chr4_1:73130057-73130076 None:intergenic 55.0%
TAGTGGAGGGATGGCGAATG+TGG - chr4_1:73128312-73128331 None:intergenic 55.0%
!! TGCGGTTGATAGTGGAGGGA+TGG - chr4_1:73128321-73128340 None:intergenic 55.0%
!! GCTGTTGCGGTTGATAGTGG+AGG - chr4_1:73128326-73128345 None:intergenic 55.0%
GGCGATTGTTGTGCCGTCTA+TGG - chr4_1:73128366-73128385 None:intergenic 55.0%
! AAAGGGAGAGAAGTGCGGTG+AGG - chr4_1:73128415-73128434 None:intergenic 55.0%
GTCGTCTTTCCGGGTCTGAA+AGG - chr4_1:73128433-73128452 None:intergenic 55.0%
TGTTCGCGTCGTCGTCTTTC+CGG - chr4_1:73128443-73128462 None:intergenic 55.0%
TCGATTCCGTTGGCGAAGGA+AGG + chr4_1:73128695-73128714 Msa0570770:CDS 55.0%
AGGGTTGGAGAGTTGTTCCC+TGG + chr4_1:73130030-73130049 Msa0570770:CDS 55.0%
GGGTTGGAGAGTTGTTCCCT+GGG + chr4_1:73130031-73130050 Msa0570770:CDS 55.0%
TATGCCCTGGTTGCCTTGGA+AGG - chr4_1:73130057-73130076 None:intergenic 55.0%
!! GCGGCTGTTGCGGTTGATAG+TGG - chr4_1:73128329-73128348 None:intergenic 60.0%
!! GTCTATGGCGCCGGTAACGT+CGG - chr4_1:73128351-73128370 None:intergenic 60.0%
GACGTTACCGGCGCCATAGA+CGG + chr4_1:73128350-73128369 Msa0570770:CDS 60.0%
TGTTGTGCCGTCTATGGCGC+CGG - chr4_1:73128360-73128379 None:intergenic 60.0%
ACAATCGCCGTCCTAAGCGG+TGG + chr4_1:73128377-73128396 Msa0570770:CDS 60.0%
GACGAAGCCACCGCTTAGGA+CGG - chr4_1:73128387-73128406 None:intergenic 60.0%
GTTCGCGTCGTCGTCTTTCC+GGG - chr4_1:73128442-73128461 None:intergenic 60.0%
GGAAAGACGACGACGCGAAC+AGG + chr4_1:73128442-73128461 Msa0570770:CDS 60.0%
AAGACGACGACGCGAACAGG+CGG + chr4_1:73128445-73128464 Msa0570770:CDS 60.0%
GAACAGGCGGAGGAAGTAGG+CGG + chr4_1:73128458-73128477 Msa0570770:CDS 60.0%
ACGGCACCTTCCTTCGCCAA+CGG - chr4_1:73128704-73128723 None:intergenic 60.0%
GCCTGAAAGGCGAAAGAGCC+CGG + chr4_1:73129652-73129671 Msa0570770:intron 60.0%
AAAGAGCCCGGCGCAAGATC+AGG + chr4_1:73129664-73129683 Msa0570770:intron 60.0%
AAGAGCCCGGCGCAAGATCA+GGG + chr4_1:73129665-73129684 Msa0570770:intron 60.0%
GTTGTTCCCTGGGCCTTCCA+AGG + chr4_1:73130041-73130060 Msa0570770:CDS 60.0%
TGGTTGCCTTGGAAGGCCCA+GGG - chr4_1:73130050-73130069 None:intergenic 60.0%
TGGGCCTTCCAAGGCAACCA+GGG + chr4_1:73130050-73130069 Msa0570770:CDS 60.0%
!! TGTTGAAAGGGCGCTGCGCA+AGG + chr4_1:73130095-73130114 Msa0570770:CDS 60.0%
!! AAAGGGCGCTGCGCAAGGTT+GGG + chr4_1:73130100-73130119 Msa0570770:CDS 60.0%
!! GCGGCTGTTGCGGTTGATAG+TGG - chr4_1:73128329-73128348 None:intergenic 60.0%
!! GTCTATGGCGCCGGTAACGT+CGG - chr4_1:73128351-73128370 None:intergenic 60.0%
GACGTTACCGGCGCCATAGA+CGG + chr4_1:73128350-73128369 Msa0570770:CDS 60.0%
TGTTGTGCCGTCTATGGCGC+CGG - chr4_1:73128360-73128379 None:intergenic 60.0%
ACAATCGCCGTCCTAAGCGG+TGG + chr4_1:73128377-73128396 Msa0570770:CDS 60.0%
GACGAAGCCACCGCTTAGGA+CGG - chr4_1:73128387-73128406 None:intergenic 60.0%
GTTCGCGTCGTCGTCTTTCC+GGG - chr4_1:73128442-73128461 None:intergenic 60.0%
GGAAAGACGACGACGCGAAC+AGG + chr4_1:73128442-73128461 Msa0570770:CDS 60.0%
AAGACGACGACGCGAACAGG+CGG + chr4_1:73128445-73128464 Msa0570770:CDS 60.0%
GAACAGGCGGAGGAAGTAGG+CGG + chr4_1:73128458-73128477 Msa0570770:CDS 60.0%
ACGGCACCTTCCTTCGCCAA+CGG - chr4_1:73128704-73128723 None:intergenic 60.0%
GCCTGAAAGGCGAAAGAGCC+CGG + chr4_1:73129652-73129671 Msa0570770:intron 60.0%
AAAGAGCCCGGCGCAAGATC+AGG + chr4_1:73129664-73129683 Msa0570770:intron 60.0%
AAGAGCCCGGCGCAAGATCA+GGG + chr4_1:73129665-73129684 Msa0570770:intron 60.0%
GTTGTTCCCTGGGCCTTCCA+AGG + chr4_1:73130041-73130060 Msa0570770:CDS 60.0%
TGGTTGCCTTGGAAGGCCCA+GGG - chr4_1:73130050-73130069 None:intergenic 60.0%
TGGGCCTTCCAAGGCAACCA+GGG + chr4_1:73130050-73130069 Msa0570770:CDS 60.0%
!! TGTTGAAAGGGCGCTGCGCA+AGG + chr4_1:73130095-73130114 Msa0570770:CDS 60.0%
!! AAAGGGCGCTGCGCAAGGTT+GGG + chr4_1:73130100-73130119 Msa0570770:CDS 60.0%
GGTAACGTCGGCGGCTGTTG+CGG - chr4_1:73128339-73128358 None:intergenic 65.0%
GCAACAGCCGCCGACGTTAC+CGG + chr4_1:73128338-73128357 Msa0570770:CDS 65.0%
!! TATGGCGCCGGTAACGTCGG+CGG - chr4_1:73128348-73128367 None:intergenic 65.0%
CAGCGACGAAGCCACCGCTT+AGG - chr4_1:73128391-73128410 None:intergenic 65.0%
CTAAGCGGTGGCTTCGTCGC+TGG + chr4_1:73128389-73128408 Msa0570770:CDS 65.0%
CGCGAACAGGCGGAGGAAGT+AGG + chr4_1:73128455-73128474 Msa0570770:CDS 65.0%
GCCGGGCTCTTTCGCCTTTC+AGG - chr4_1:73129656-73129675 None:intergenic 65.0%
CTGGTTGCCTTGGAAGGCCC+AGG - chr4_1:73130051-73130070 None:intergenic 65.0%
CTGGGCCTTCCAAGGCAACC+AGG + chr4_1:73130049-73130068 Msa0570770:CDS 65.0%
!! GAAAGGGCGCTGCGCAAGGT+TGG + chr4_1:73130099-73130118 Msa0570770:CDS 65.0%
GGTAACGTCGGCGGCTGTTG+CGG - chr4_1:73128339-73128358 None:intergenic 65.0%
GCAACAGCCGCCGACGTTAC+CGG + chr4_1:73128338-73128357 Msa0570770:CDS 65.0%
!! TATGGCGCCGGTAACGTCGG+CGG - chr4_1:73128348-73128367 None:intergenic 65.0%
CAGCGACGAAGCCACCGCTT+AGG - chr4_1:73128391-73128410 None:intergenic 65.0%
CTAAGCGGTGGCTTCGTCGC+TGG + chr4_1:73128389-73128408 Msa0570770:CDS 65.0%
CGCGAACAGGCGGAGGAAGT+AGG + chr4_1:73128455-73128474 Msa0570770:CDS 65.0%
GCCGGGCTCTTTCGCCTTTC+AGG - chr4_1:73129656-73129675 None:intergenic 65.0%
CTGGTTGCCTTGGAAGGCCC+AGG - chr4_1:73130051-73130070 None:intergenic 65.0%
CTGGGCCTTCCAAGGCAACC+AGG + chr4_1:73130049-73130068 Msa0570770:CDS 65.0%
!! GAAAGGGCGCTGCGCAAGGT+TGG + chr4_1:73130099-73130118 Msa0570770:CDS 65.0%
ACGACGACGCGAACAGGCGG+AGG + chr4_1:73128448-73128467 Msa0570770:CDS 70.0%
ACGACGACGCGAACAGGCGG+AGG + chr4_1:73128448-73128467 Msa0570770:CDS 70.0%
! GGGCGCTGCGCAAGGTTGGG+TGG + chr4_1:73130103-73130122 Msa0570770:CDS 75.0%
! GGGCGCTGCGCAAGGTTGGG+TGG + chr4_1:73130103-73130122 Msa0570770:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 73128085 73130475 73128085 ID=Msa0570770;Name=Msa0570770
chr4_1 mRNA 73128085 73130475 73128085 ID=Msa0570770-mRNA-1;Parent=Msa0570770;Name=Msa0570770-mRNA-1;_AED=0.00;_eAED=0.00;_QI=118|1|1|1|1|1|2|278|324
chr4_1 exon 73128085 73128775 73128085 ID=Msa0570770-mRNA-1:exon:25040;Parent=Msa0570770-mRNA-1
chr4_1 exon 73129796 73130475 73129796 ID=Msa0570770-mRNA-1:exon:25041;Parent=Msa0570770-mRNA-1
chr4_1 five_prime_UTR 73128085 73128202 73128085 ID=Msa0570770-mRNA-1:five_prime_utr;Parent=Msa0570770-mRNA-1
chr4_1 CDS 73128203 73128775 73128203 ID=Msa0570770-mRNA-1:cds;Parent=Msa0570770-mRNA-1
chr4_1 CDS 73129796 73130197 73129796 ID=Msa0570770-mRNA-1:cds;Parent=Msa0570770-mRNA-1
chr4_1 three_prime_UTR 73130198 73130475 73130198 ID=Msa0570770-mRNA-1:three_prime_utr;Parent=Msa0570770-mRNA-1
Gene Sequence

>Msa0570770

ATGGCGTTCTCATCATCCATGTGGTCTTCTCTCTTTGTTCCAAACCCAAACAAAACTAACCGTTTCGCTACATTCTCTCCCGCCACCCACAACAAACTCTTAACAACCACATTCGCCATCCCTCCACTATCAACCGCAACAGCCGCCGACGTTACCGGCGCCATAGACGGCACAACAATCGCCGTCCTAAGCGGTGGCTTCGTCGCTGGCCTCACCGCACTTCTCTCCCTTTCAGACCCGGAAAGACGACGACGCGAACAGGCGGAGGAAGTAGGCGGTGATGACAAAGAAGTTGTGAGGGAGTATTTCAACAACAACGGGTTTCAACGATGGAAGAAGATTTACGGTGATACTGATGATGTTAATAGAGTTCAACGGGATATTAGGTTGGGGCATTCCAAGACTGTTGAGAATGCTTTGCAGATGTTGAAAGATGAAGGGTCACTTCAGGGTGTTACTATTTGTGATGCTGGTTGTGGTACTGGTTCTCTTTCGATTCCGTTGGCGAAGGAAGGTGCCGTTGTTTGTGCTAGTGATATATCGGCTGCCATGGTTGCTGAAGCTGAGAAACAGGCAAAAGAACAACTTGTGTCCAGTGAGAATGGAGTGTCACCTGCGATGCCAAAGTTTGTGGTGAGTGATTTAGAGAGTTTGGATGGATTGTACGATACAGTGGTGTGCCTCGATGTTATGATTCATTACCCTCAGAGTAAAGCAGATGGGATGATTGCTCACCTTGCTTCTTTGGCAGAAAAGCGATTGATTCTGAGCTTTGCACCTAAGACATTTTATTATGATGCACTGAAGAGGGTTGGAGAGTTGTTCCCTGGGCCTTCCAAGGCAACCAGGGCATATCTTCATTCTGAAGCAGATGTTGAAAGGGCGCTGCGCAAGGTTGGGTGGACGATAAAGAAGAAAGGCTTAATCGCTACTCAATTTTACTTTGCCAAGCTTATTGAGGCTGTTCCTATGTAG

Protein sequence

>Msa0570770

MAFSSSMWSSLFVPNPNKTNRFATFSPATHNKLLTTTFAIPPLSTATAADVTGAIDGTTIAVLSGGFVAGLTALLSLSDPERRRREQAEEVGGDDKEVVREYFNNNGFQRWKKIYGDTDDVNRVQRDIRLGHSKTVENALQMLKDEGSLQGVTICDAGCGTGSLSIPLAKEGAVVCASDISAAMVAEAEKQAKEQLVSSENGVSPAMPKFVVSDLESLDGLYDTVVCLDVMIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDALKRVGELFPGPSKATRAYLHSEADVERALRKVGWTIKKKGLIATQFYFAKLIEAVPM*