AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0542340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0542340 MtrunA17_Chr4g0022111 97.720 307 6 1 1 307 1 306 0.0 629
Msa0542340 MtrunA17_Chr2g0324081 77.705 305 63 2 8 307 10 314 3.61e-169 471
Msa0542340 MtrunA17_Chr1g0188731 44.109 331 142 11 9 301 13 338 3.69e-73 229
Msa0542340 MtrunA17_Chr8g0376071 39.879 331 160 7 5 301 51 376 1.51e-68 218
Msa0542340 MtrunA17_Chr4g0067961 38.788 330 165 7 2 301 65 387 1.10e-66 213
Msa0542340 MtrunA17_Chr6g0483721 36.857 350 157 8 3 307 67 397 6.38e-66 212
Msa0542340 MtrunA17_Chr1g0209341 38.298 329 157 7 8 301 89 406 3.82e-65 210
Msa0542340 MtrunA17_Chr6g0477851 44.195 267 103 6 78 301 14 277 3.30e-59 191
Msa0542340 MtrunA17_Chr2g0294991 36.556 331 168 8 3 301 124 444 8.57e-57 189
Msa0542340 MtrunA17_Chr1g0195091 39.716 141 76 4 163 302 1 133 4.77e-29 108
Msa0542340 MtrunA17_Chr6g0467441 47.445 137 54 5 180 298 1 137 6.65e-27 105
Msa0542340 MtrunA17_Chr6g0481871 28.253 269 114 11 40 265 812 1044 5.90e-14 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0542340 AT4G03420.1 69.868 302 88 2 8 306 7 308 2.02e-145 412
Msa0542340 AT1G03610.1 66.013 306 89 5 7 306 10 306 2.59e-139 396
Msa0542340 AT4G28150.1 58.882 304 84 6 1 295 1 272 3.11e-114 332
Msa0542340 AT4G28150.2 58.882 304 82 7 1 295 1 270 2.98e-112 327
Msa0542340 AT1G03610.2 67.094 234 65 3 1 230 4 229 3.87e-107 312
Msa0542340 AT1G73210.2 50.473 317 125 7 3 302 7 308 5.18e-95 284
Msa0542340 AT1G73210.3 50.158 317 128 7 3 302 7 310 9.01e-95 283
Msa0542340 AT1G73210.1 50.158 317 128 7 3 302 7 310 9.01e-95 283
Msa0542340 AT1G17830.1 50.621 322 133 9 3 301 13 331 8.92e-94 281
Msa0542340 AT4G28150.3 58.252 206 62 4 1 197 1 191 1.58e-71 220
Msa0542340 AT2G01260.1 40.317 315 159 7 6 301 62 366 1.43e-63 205
Msa0542340 AT1G15030.1 38.629 321 170 7 3 301 42 357 3.60e-62 201
Msa0542340 AT5G49220.1 37.500 312 172 6 2 301 101 401 1.11e-60 199
Msa0542340 AT4G16100.1 39.088 307 166 7 9 302 88 386 1.44e-59 195
Msa0542340 AT2G01260.2 41.250 240 115 5 6 226 62 294 1.41e-48 165
Msa0542340 AT1G15030.2 40.486 247 121 6 3 227 42 284 1.56e-48 164
Msa0542340 AT5G23380.1 36.129 310 161 8 7 302 6 292 1.41e-41 146
Msa0542340 AT5G23380.3 36.522 230 119 5 7 226 6 218 5.79e-29 111
Msa0542340 AT5G23380.2 36.522 230 119 5 7 226 6 218 5.79e-29 111
Msa0542340 AT2G01260.3 36.066 183 91 6 6 169 62 237 6.25e-22 93.2
Msa0542340 AT5G08360.1 34.395 157 86 4 148 303 26 166 4.89e-19 83.6
Msa0542340 AT5G08360.2 32.593 135 75 3 169 303 3 121 1.43e-14 70.1

Find 106 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGAAACCTTAACCGTTTA+TGG 0.049207 4_1:+27115753 Msa0542340:CDS
GTCCCTCCCTTTCAGATTAA+TGG 0.178578 4_1:+27117926 Msa0542340:intron
AGAGAAATAATTATAGTTAT+AGG 0.221661 4_1:-27115434 None:intergenic
CATTGTTGTTTAAGAAATAT+TGG 0.244569 4_1:+27115251 Msa0542340:five_prime_UTR
TTCAATAGTTACCCTTTCTA+AGG 0.259338 4_1:-27119692 None:intergenic
ATTTCACTCTGAGTGATCTT+TGG 0.265625 4_1:+27115804 Msa0542340:CDS
TACTAAGTAGTAATATTCTT+TGG 0.273648 4_1:-27119808 None:intergenic
TTCAGAGAAGAGATTGATTC+TGG 0.274830 4_1:+27116046 Msa0542340:intron
GAGAAATAATTATAGTTATA+GGG 0.277082 4_1:-27115433 None:intergenic
AACATAGAAAATGCAATTAA+TGG 0.278698 4_1:-27119580 None:intergenic
GGGCATTCGGCATGGCTAAA+AGG 0.299665 4_1:+27119464 Msa0542340:exon
CGGGAAATAAACAAAATAAA+AGG 0.302913 4_1:-27114931 None:intergenic
TATTTACAAGCAATAATTTC+AGG 0.321189 4_1:+27115933 Msa0542340:CDS
AAATTTACCTTATCAATTAG+AGG 0.328507 4_1:-27116247 None:intergenic
TTTGGAATTGTTTCGATGAA+TGG 0.331760 4_1:+27115822 Msa0542340:CDS
AGGTCAATATATAAAGTATT+AGG 0.337684 4_1:-27119509 None:intergenic
CCCATGGGAATATGATATAT+CGG 0.340823 4_1:-27118241 None:intergenic
TCCCTCCCTTTCAGATTAAT+GGG 0.345433 4_1:+27117927 Msa0542340:intron
AAGTTGAGAAATGTCTATAT+AGG 0.346692 4_1:-27114862 None:intergenic
ACACTTTCATCTTCATTTCA+AGG 0.353986 4_1:+27118307 Msa0542340:CDS
TCATGACTTTAATTACTTCA+TGG 0.353997 4_1:+27119443 Msa0542340:CDS
GAGTGAAACTGAAAAGAAAA+TGG 0.379593 4_1:-27114961 None:intergenic
TTTGTTGTTGAGCACTTGTT+TGG 0.390396 4_1:+27119556 Msa0542340:three_prime_UTR
GGCATCTCATTGCAACCATT+TGG 0.391055 4_1:+27119297 Msa0542340:CDS
AGTTGAGAAATGTCTATATA+GGG 0.393563 4_1:-27114861 None:intergenic
CAAGGGAATTTGTGGGGCTC+TGG 0.401556 4_1:+27119339 Msa0542340:CDS
GAAAAGAAAATGGTCTTTCC+CGG 0.407009 4_1:-27114951 None:intergenic
ACTAAGTAGTAATATTCTTT+GGG 0.411838 4_1:-27119807 None:intergenic
GCAACTGCCATCCAACTTGC+TGG 0.415630 4_1:-27118001 None:intergenic
TGTGTGTAGAGAGGTAGATT+AGG 0.416327 4_1:+27119753 Msa0542340:three_prime_UTR
ATTGCTATTTGTTACAGAAA+AGG 0.417937 4_1:+27115206 Msa0542340:five_prime_UTR
ACCATCTAAGTTTCTACAAA+AGG 0.419530 4_1:+27115624 Msa0542340:CDS
TTCATGGTTGAAGCAACTTA+AGG 0.420063 4_1:+27119413 Msa0542340:CDS
TATCACACGGATTCCATAAA+CGG 0.423998 4_1:-27115766 None:intergenic
TTAATTACTTCATGGGCATT+CGG 0.424039 4_1:+27119451 Msa0542340:CDS
CATGACTTTAATTACTTCAT+GGG 0.433693 4_1:+27119444 Msa0542340:CDS
ACGGATTCCATAAACGGTTA+AGG 0.435111 4_1:-27115760 None:intergenic
CAATGAGGTCAATGCAATCT+AGG 0.444961 4_1:+27115560 Msa0542340:exon
AGAAACTTAGATGGTACAAT+AGG 0.450966 4_1:-27115616 None:intergenic
TTGTTTCATGCGTTTAAGAA+AGG 0.457439 4_1:-27115111 None:intergenic
ATTAGAGGAACTCTTCCATA+TGG 0.461032 4_1:-27116232 None:intergenic
ATCTTTAATTGTTCTTCCCA+TGG 0.468483 4_1:-27118257 None:intergenic
CTGGCATTTGAATGACCGAT+TGG 0.470292 4_1:+27116174 Msa0542340:CDS
ACAAGATGCAAGGGAATTTG+TGG 0.474690 4_1:+27119331 Msa0542340:CDS
AAGAGTTCCTCTAATTGATA+AGG 0.483084 4_1:+27116240 Msa0542340:CDS
CCATGGGAATATGATATATC+GGG 0.486988 4_1:-27118240 None:intergenic
GTGTAGAGAGGTAGATTAGG+AGG 0.491169 4_1:+27119756 Msa0542340:three_prime_UTR
TATGTAGTGTGGCAGATTCA+TGG 0.496401 4_1:+27119397 Msa0542340:CDS
GAGGTTCTTTGTGTGTAGAG+AGG 0.496735 4_1:+27119744 Msa0542340:three_prime_UTR
ATTTGAATTGCAGAGAGGTA+AGG 0.504614 4_1:-27115911 None:intergenic
CAAGTTGGATGGCAGTTGCT+TGG 0.508186 4_1:+27118005 Msa0542340:CDS
TGGAAGAGACTCAAGAGAAA+AGG 0.512210 4_1:+27119262 Msa0542340:CDS
TCTTTAATTGTTCTTCCCAT+GGG 0.512415 4_1:-27118256 None:intergenic
TGTATAGCCTCTTTGTGAAG+AGG 0.516424 4_1:+27119725 Msa0542340:three_prime_UTR
ACTTGTTAGACTCCTTAGAA+AGG 0.516744 4_1:+27119680 Msa0542340:three_prime_UTR
CAAGATGCAAGGGAATTTGT+GGG 0.517532 4_1:+27119332 Msa0542340:CDS
CATCTGAGCAAGATAGTCTC+TGG 0.520611 4_1:+27116155 Msa0542340:CDS
CTTGTTAGACTCCTTAGAAA+GGG 0.522238 4_1:+27119681 Msa0542340:three_prime_UTR
TGGCATTTGAATGACCGATT+GGG 0.527348 4_1:+27116175 Msa0542340:CDS
TCTCTTCCATCTCATTATCA+AGG 0.529957 4_1:-27119248 None:intergenic
TATGGTGAAGAAAGCAATCA+AGG 0.530917 4_1:-27115588 None:intergenic
TTGTACGTGGCTAAACCAAA+TGG 0.531561 4_1:-27119312 None:intergenic
AGAGGTAAGGAACATAGTAT+TGG 0.534665 4_1:-27115898 None:intergenic
TGGTAGGGACCAAGAAAAGC+TGG 0.539606 4_1:+27119368 Msa0542340:CDS
CCCGATATATCATATTCCCA+TGG 0.539980 4_1:+27118240 Msa0542340:CDS
ATAGCGAGTGTGATAAGCTA+TGG 0.542399 4_1:+27116113 Msa0542340:CDS
GGAAATAAAGATGACCCAAT+CGG 0.546064 4_1:-27116189 None:intergenic
TTCGATGAATGGAGTGCCTA+TGG 0.551127 4_1:+27115833 Msa0542340:CDS
TTGATCTATCACCAGCAAGT+TGG 0.551938 4_1:+27117990 Msa0542340:CDS
ATGGTACAATAGGTGTTGTA+TGG 0.558926 4_1:-27115606 None:intergenic
TTGACCTCATTGTATATCAA+AGG 0.560370 4_1:-27115549 None:intergenic
TCTTCCTTTGATATACAATG+AGG 0.561900 4_1:+27115545 Msa0542340:exon
TACTTCATGGGCATTCGGCA+TGG 0.562500 4_1:+27119456 Msa0542340:CDS
GGGTTAGCAGAAAGATACCC+AGG 0.563766 4_1:+27117947 Msa0542340:CDS
TGAAGTAATTAAAGTCATGA+TGG 0.564712 4_1:-27119440 None:intergenic
CAAAGAACCTCTTCACAAAG+AGG 0.575757 4_1:-27119732 None:intergenic
AAAAGAAAATGGTCTTTCCC+GGG 0.579152 4_1:-27114950 None:intergenic
GATTGGAACTCCAACGCCAT+AGG 0.589508 4_1:-27115849 None:intergenic
GAATGGAGTGCCTATGGCGT+TGG 0.591581 4_1:+27115839 Msa0542340:CDS
ACTCAAGAGAAAAGGAAGGA+AGG 0.593264 4_1:+27119270 Msa0542340:CDS
GGGGCTCTGGAAAATGTGGT+AGG 0.593911 4_1:+27119352 Msa0542340:CDS
CTATGGACATCATCAGAAGA+GGG 0.597455 4_1:+27116130 Msa0542340:CDS
TATGGACCTTGATAATGAGA+TGG 0.597757 4_1:+27119242 Msa0542340:CDS
TGTGTGTGTGACGGTGATTG+AGG 0.598944 4_1:-27114902 None:intergenic
CCGATATATCATATTCCCAT+GGG 0.601439 4_1:+27118241 Msa0542340:CDS
GGGCTCTGGAAAATGTGGTA+GGG 0.603737 4_1:+27119353 Msa0542340:CDS
TTAGCCACGTACAAGATGCA+AGG 0.611061 4_1:+27119321 Msa0542340:CDS
AGTAATTAAAGTCATGATGG+TGG 0.611478 4_1:-27119437 None:intergenic
ATGAAAGTGTGTGGTAAGTG+AGG 0.614288 4_1:-27118294 None:intergenic
GCTATGGACATCATCAGAAG+AGG 0.617480 4_1:+27116129 Msa0542340:CDS
TCAACTGTTTCTCTATCACA+CGG 0.620809 4_1:-27115779 None:intergenic
ATTCCCTTGCATCTTGTACG+TGG 0.626371 4_1:-27119325 None:intergenic
AGAGACTCAAGAGAAAAGGA+AGG 0.627266 4_1:+27119266 Msa0542340:CDS
TCTATCACCAGCAAGTTGGA+TGG 0.627514 4_1:+27117994 Msa0542340:CDS
GAGAAAAGGAAGGAAGGTGA+AGG 0.630280 4_1:+27119276 Msa0542340:CDS
AGGATTAAGTGTGTGTGTGA+CGG 0.632588 4_1:-27114911 None:intergenic
TTCTGGTGATAGTGAGACAA+GGG 0.640927 4_1:+27116063 Msa0542340:CDS
GTGTGACGGTGATTGAGGAA+AGG 0.642377 4_1:-27114897 None:intergenic
TAGCCACGTACAAGATGCAA+GGG 0.647629 4_1:+27119322 Msa0542340:CDS
TAAATATTTGAATTGCAGAG+AGG 0.649675 4_1:-27115916 None:intergenic
TTGTGGGGCTCTGGAAAATG+TGG 0.652498 4_1:+27119348 Msa0542340:CDS
GCTGGTTTCACTATGTAGTG+TGG 0.665797 4_1:+27119386 Msa0542340:CDS
ATTCTGGTGATAGTGAGACA+AGG 0.671618 4_1:+27116062 Msa0542340:CDS
AAGATGCAAGGGAATTTGTG+GGG 0.694545 4_1:+27119333 Msa0542340:CDS
GGTTAGCAGAAAGATACCCA+GGG 0.695930 4_1:+27117948 Msa0542340:CDS
GAAATGAAGATGAAAGTGTG+TGG 0.729995 4_1:-27118303 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATACAAAAAAAAATATGT+TGG + chr4_1:27115028-27115047 Msa0542340:five_prime_UTR 10.0%
!!! ATCAATATTTTTTTTTTTGA+AGG - chr4_1:27115283-27115302 None:intergenic 10.0%
!!! TTTATTTTATCTTTTTTTTC+TGG + chr4_1:27116592-27116611 Msa0542340:intron 10.0%
!!! TTATTTTATCTTTTTTTTCT+GGG + chr4_1:27116593-27116612 Msa0542340:intron 10.0%
!!! CATTAAAAGTTTTTTTTTTT+AGG - chr4_1:27118521-27118540 None:intergenic 10.0%
!!! ATTTTCATTTCTTTTATTAA+GGG - chr4_1:27118715-27118734 None:intergenic 10.0%
!!! AATTTTCATTTCTTTTATTA+AGG - chr4_1:27118716-27118735 None:intergenic 10.0%
!!! CAAAATTTTCATTTTTTAAT+AGG + chr4_1:27118931-27118950 Msa0542340:intron 10.0%
!!! AAATTTTCATTTTTTAATAG+GGG + chr4_1:27118933-27118952 Msa0542340:intron 10.0%
!!! TCTATGTTTTTTATTTTTAT+TGG + chr4_1:27119595-27119614 Msa0542340:three_prime_UTR 10.0%
!! GAGAAATAATTATAGTTATA+GGG - chr4_1:27115436-27115455 None:intergenic 15.0%
!! AGAGAAATAATTATAGTTAT+AGG - chr4_1:27115437-27115456 None:intergenic 15.0%
!!! TTTTTTCCTTTTATGATTTT+TGG + chr4_1:27115668-27115687 Msa0542340:intron 15.0%
!! AATAAACCAAAAATCATAAA+AGG - chr4_1:27115677-27115696 None:intergenic 15.0%
!!! AAATTTTTAATCTATGGATT+AGG + chr4_1:27116395-27116414 Msa0542340:intron 15.0%
!! GTTAACATTATAATATTTCA+AGG + chr4_1:27116702-27116721 Msa0542340:intron 15.0%
!!! TATTATATTCCCTATTTTTA+AGG - chr4_1:27116730-27116749 None:intergenic 15.0%
!! TTAAAAATAGGGAATATAAT+AGG + chr4_1:27116729-27116748 Msa0542340:intron 15.0%
!! CATAATAAAATAAAATAGGT+GGG - chr4_1:27117182-27117201 None:intergenic 15.0%
!! AGTCCATAATAAAATAAAAT+AGG - chr4_1:27117186-27117205 None:intergenic 15.0%
!! TTGAAAAAATCAATCTAATT+TGG - chr4_1:27117283-27117302 None:intergenic 15.0%
!!! TTTTTTATTTTTCAAACACT+CGG - chr4_1:27117419-27117438 None:intergenic 15.0%
!! ATTTAAATTTATAAGGTAAG+AGG + chr4_1:27117493-27117512 Msa0542340:intron 15.0%
!!! AGTGAATTTCATTTTAATAA+AGG + chr4_1:27117522-27117541 Msa0542340:intron 15.0%
!! AAAAGTTAATCACTTAAAAT+TGG + chr4_1:27117564-27117583 Msa0542340:intron 15.0%
!!! ATTTTTACTAATAGAATCAA+CGG - chr4_1:27117865-27117884 None:intergenic 15.0%
!! ATGACAATTATAAAAGATTA+AGG - chr4_1:27118069-27118088 None:intergenic 15.0%
!! AATAATTATTACGAGATAAA+AGG - chr4_1:27118454-27118473 None:intergenic 15.0%
!!! TCCTTTTATTCATTATTTTT+TGG + chr4_1:27118640-27118659 Msa0542340:intron 15.0%
!!! TTTTCATTTCTTTTATTAAG+GGG - chr4_1:27118714-27118733 None:intergenic 15.0%
!!! ATTGCAACATTTTAAAATTT+AGG + chr4_1:27118961-27118980 Msa0542340:intron 15.0%
!! CACAAATTATGAAAAAAATA+AGG - chr4_1:27119007-27119026 None:intergenic 15.0%
!!! CTTTTATTTTGTTTATTTCC+CGG + chr4_1:27114932-27114951 Msa0542340:five_prime_UTR 20.0%
!!! TTTTATTTTGTTTATTTCCC+GGG + chr4_1:27114933-27114952 Msa0542340:five_prime_UTR 20.0%
!!! AAAGATGTTTTTGTTTTATG+AGG - chr4_1:27115001-27115020 None:intergenic 20.0%
!!! CATTGTTGTTTAAGAAATAT+TGG + chr4_1:27115251-27115270 Msa0542340:five_prime_UTR 20.0%
!! TGATGTCTAAGAAATAAAAA+AGG + chr4_1:27115299-27115318 Msa0542340:intron 20.0%
!! CCAAATATGAGAAAAATAAA+GGG - chr4_1:27115467-27115486 None:intergenic 20.0%
!!! CCTTTATTTTTCTCATATTT+GGG + chr4_1:27115465-27115484 Msa0542340:five_prime_UTR 20.0%
!! ATCATAAAAGGAAAAAAGAA+TGG - chr4_1:27115665-27115684 None:intergenic 20.0%
!! TATTTACAAGCAATAATTTC+AGG + chr4_1:27115933-27115952 Msa0542340:CDS 20.0%
!! AAATTTACCTTATCAATTAG+AGG - chr4_1:27116250-27116269 None:intergenic 20.0%
!! AGAAACATGTGATTAAAAAA+TGG - chr4_1:27116337-27116356 None:intergenic 20.0%
!!! AGTAGGAAATTTTTAATCTA+TGG + chr4_1:27116389-27116408 Msa0542340:intron 20.0%
!!! AAGATAGGAATTTTATTCTA+AGG + chr4_1:27116658-27116677 Msa0542340:intron 20.0%
!! GTATTTAGAAAAAAGATGTT+TGG + chr4_1:27116680-27116699 Msa0542340:intron 20.0%
!!! AGTTTACTAAATTTTATTGC+CGG - chr4_1:27116826-27116845 None:intergenic 20.0%
!! AAAGAACTTGAGATTTAAAT+CGG + chr4_1:27116937-27116956 Msa0542340:intron 20.0%
!! CAATGAAAATTACAAAGATA+AGG - chr4_1:27117100-27117119 None:intergenic 20.0%
!!! TCTTTGTAATTTTCATTGAT+TGG + chr4_1:27117102-27117121 Msa0542340:intron 20.0%
!! CTAGACAATAATTTAAGTAA+AGG - chr4_1:27117157-27117176 None:intergenic 20.0%
!! CTTTACTTAAATTATTGTCT+AGG + chr4_1:27117155-27117174 Msa0542340:intron 20.0%
!! CCATAATAAAATAAAATAGG+TGG - chr4_1:27117183-27117202 None:intergenic 20.0%
!!! CCACCTATTTTATTTTATTA+TGG + chr4_1:27117180-27117199 Msa0542340:intron 20.0%
!!! GGATATATTTTCAATCAAAT+CGG + chr4_1:27117329-27117348 Msa0542340:intron 20.0%
!!! GATATATTTTCAATCAAATC+GGG + chr4_1:27117330-27117349 Msa0542340:intron 20.0%
!! GTGTTTGAAAAATAAAAAAG+AGG + chr4_1:27117420-27117439 Msa0542340:intron 20.0%
!!! AAGATTTTAAGCACTAATTT+AGG + chr4_1:27117811-27117830 Msa0542340:intron 20.0%
!! AATTAGTATAAGTTATAGCA+AGG - chr4_1:27118046-27118065 None:intergenic 20.0%
!!! CATTTTTCTTTAATTAGTGA+AGG + chr4_1:27118086-27118105 Msa0542340:intron 20.0%
!! AATGGTTAAATTAGTACATT+TGG + chr4_1:27118113-27118132 Msa0542340:intron 20.0%
!!! ATGTACTAAATTTTCATGTT+TGG + chr4_1:27118149-27118168 Msa0542340:intron 20.0%
!! ATCCCTTATAGTATTAAAAT+TGG + chr4_1:27118402-27118421 Msa0542340:intron 20.0%
!!! GTCCAATTTTAATACTATAA+GGG - chr4_1:27118407-27118426 None:intergenic 20.0%
!! CAGAAAAAAAAATTTAAGAG+TGG - chr4_1:27118556-27118575 None:intergenic 20.0%
!! TATGATAGTAAATAGATCAA+TGG + chr4_1:27118580-27118599 Msa0542340:intron 20.0%
!! GCCAAAAAATAATGAATAAA+AGG - chr4_1:27118644-27118663 None:intergenic 20.0%
!!! CATTGTTTTGTAAAATTAAG+GGG - chr4_1:27118742-27118761 None:intergenic 20.0%
!!! GCATTGTTTTGTAAAATTAA+GGG - chr4_1:27118743-27118762 None:intergenic 20.0%
!!! TGCATTGTTTTGTAAAATTA+AGG - chr4_1:27118744-27118763 None:intergenic 20.0%
!!! TTTACAAAAAGTTGCAATTT+TGG - chr4_1:27118806-27118825 None:intergenic 20.0%
!!! CAACTTTTTGTAAAGATAAA+AGG + chr4_1:27118812-27118831 Msa0542340:intron 20.0%
!!! AGGTCAATATATAAAGTATT+AGG - chr4_1:27119512-27119531 None:intergenic 20.0%
!! AACATAGAAAATGCAATTAA+TGG - chr4_1:27119583-27119602 None:intergenic 20.0%
!! ACTAAGTAGTAATATTCTTT+GGG - chr4_1:27119810-27119829 None:intergenic 20.0%
!! TACTAAGTAGTAATATTCTT+TGG - chr4_1:27119811-27119830 None:intergenic 20.0%
! AGTTGAGAAATGTCTATATA+GGG - chr4_1:27114864-27114883 None:intergenic 25.0%
! AAGTTGAGAAATGTCTATAT+AGG - chr4_1:27114865-27114884 None:intergenic 25.0%
! CGGGAAATAAACAAAATAAA+AGG - chr4_1:27114934-27114953 None:intergenic 25.0%
!!! TGTTTGTTTTACAAGGTTTA+AGG + chr4_1:27115065-27115084 Msa0542340:five_prime_UTR 25.0%
!!! ATTGCTATTTGTTACAGAAA+AGG + chr4_1:27115206-27115225 Msa0542340:five_prime_UTR 25.0%
!!! TATTTTTCGGTGGAAAAAAT+GGG + chr4_1:27115333-27115352 Msa0542340:five_prime_UTR 25.0%
!!! TTATGACTCTTTTTTAGTAG+AGG + chr4_1:27115383-27115402 Msa0542340:five_prime_UTR 25.0%
!!! CCCTTTATTTTTCTCATATT+TGG + chr4_1:27115464-27115483 Msa0542340:five_prime_UTR 25.0%
! CCCAAATATGAGAAAAATAA+AGG - chr4_1:27115468-27115487 None:intergenic 25.0%
!! TCCAATCAACTTTAAAAATG+AGG + chr4_1:27115865-27115884 Msa0542340:CDS 25.0%
!!! TCCTCATTTTTAAAGTTGAT+TGG - chr4_1:27115869-27115888 None:intergenic 25.0%
! TAAATATTTGAATTGCAGAG+AGG - chr4_1:27115919-27115938 None:intergenic 25.0%
!!! GAGTTGATTTTTCAAAATAC+TGG - chr4_1:27116213-27116232 None:intergenic 25.0%
! TTTGAAAAATCAACTCCATA+TGG + chr4_1:27116217-27116236 Msa0542340:CDS 25.0%
! GTACAAAGTGACAATTTATT+AGG - chr4_1:27116508-27116527 None:intergenic 25.0%
! AGTGTATCAAATTTATTCCT+AGG + chr4_1:27116629-27116648 Msa0542340:intron 25.0%
! ATTCCTAGGAATATAAAGAT+AGG + chr4_1:27116643-27116662 Msa0542340:intron 25.0%
! ATTCCTATCTTTATATTCCT+AGG - chr4_1:27116649-27116668 None:intergenic 25.0%
! TTTCAAGGAACCTTAAAAAT+AGG + chr4_1:27116717-27116736 Msa0542340:intron 25.0%
! TTCAAGGAACCTTAAAAATA+GGG + chr4_1:27116718-27116737 Msa0542340:intron 25.0%
!! AAAAGTTTTCCCAAAGAAAA+TGG - chr4_1:27116782-27116801 None:intergenic 25.0%
!! GTTTACTAAATTTTATTGCC+GGG - chr4_1:27116825-27116844 None:intergenic 25.0%
! ACAAAAACATCACTATTTGT+TGG + chr4_1:27117230-27117249 Msa0542340:intron 25.0%
! CAAAAACATCACTATTTGTT+GGG + chr4_1:27117231-27117250 Msa0542340:intron 25.0%
!!! CATTGTTTTTTTCACAGTTT+TGG - chr4_1:27117390-27117409 None:intergenic 25.0%
! TTAATTAGTGAAGGTAGAAA+TGG + chr4_1:27118095-27118114 Msa0542340:intron 25.0%
!!! TACTCATGGTTGATATTTTT+AGG + chr4_1:27118215-27118234 Msa0542340:intron 25.0%
!!! GGTCCAATTTTAATACTATA+AGG - chr4_1:27118408-27118427 None:intergenic 25.0%
! CTTATTTCCCTAAAGATAAA+GGG + chr4_1:27118844-27118863 Msa0542340:intron 25.0%
!! CTTTTAACCCTTTATCTTTA+GGG - chr4_1:27118854-27118873 None:intergenic 25.0%
!! ACTTTTAACCCTTTATCTTT+AGG - chr4_1:27118855-27118874 None:intergenic 25.0%
!! AATTTTGTCCTCTATCTTTA+AGG - chr4_1:27118918-27118937 None:intergenic 25.0%
!!! GCAACATTTTAAAATTTAGG+AGG + chr4_1:27118964-27118983 Msa0542340:intron 25.0%
! AATAAGTGCAAAAAGCTAAT+AGG - chr4_1:27119172-27119191 None:intergenic 25.0%
!!! TATTAGCTTTTTGCACTTAT+TGG + chr4_1:27119171-27119190 Msa0542340:intron 25.0%
! TGAAGTAATTAAAGTCATGA+TGG - chr4_1:27119443-27119462 None:intergenic 25.0%
! TCATGACTTTAATTACTTCA+TGG + chr4_1:27119443-27119462 Msa0542340:CDS 25.0%
! CATGACTTTAATTACTTCAT+GGG + chr4_1:27119444-27119463 Msa0542340:CDS 25.0%
! TATCCTAAAAAAGAAGAGTT+AGG - chr4_1:27119535-27119554 None:intergenic 25.0%
!! TTTTATTGGAGTATGTATGT+AGG + chr4_1:27119609-27119628 Msa0542340:three_prime_UTR 25.0%
GAGTGAAACTGAAAAGAAAA+TGG - chr4_1:27114964-27114983 None:intergenic 30.0%
!!! TGCACTTTGTTTGTTTTACA+AGG + chr4_1:27115058-27115077 Msa0542340:five_prime_UTR 30.0%
TTGTTTCATGCGTTTAAGAA+AGG - chr4_1:27115114-27115133 None:intergenic 30.0%
TAAACGCATGAAACAAAAAC+AGG + chr4_1:27115118-27115137 Msa0542340:five_prime_UTR 30.0%
CATGAAACAAAAACAGGATT+TGG + chr4_1:27115124-27115143 Msa0542340:five_prime_UTR 30.0%
! TTTGGATTGAGTTTTCTTCA+AGG + chr4_1:27115142-27115161 Msa0542340:five_prime_UTR 30.0%
! GGCATAGATTGAGTATTTTT+CGG + chr4_1:27115320-27115339 Msa0542340:five_prime_UTR 30.0%
!! ATAGATTGAGTATTTTTCGG+TGG + chr4_1:27115323-27115342 Msa0542340:five_prime_UTR 30.0%
!! GTATTTTTCGGTGGAAAAAA+TGG + chr4_1:27115332-27115351 Msa0542340:five_prime_UTR 30.0%
CAAAGGAAGAAAAAAGAACA+AGG - chr4_1:27115535-27115554 None:intergenic 30.0%
TCTTCCTTTGATATACAATG+AGG + chr4_1:27115545-27115564 Msa0542340:exon 30.0%
TTGACCTCATTGTATATCAA+AGG - chr4_1:27115552-27115571 None:intergenic 30.0%
AGAAACTTAGATGGTACAAT+AGG - chr4_1:27115619-27115638 None:intergenic 30.0%
ACCATCTAAGTTTCTACAAA+AGG + chr4_1:27115624-27115643 Msa0542340:CDS 30.0%
! ACCTTTTGTAGAAACTTAGA+TGG - chr4_1:27115628-27115647 None:intergenic 30.0%
TTAGAAACCTTAACCGTTTA+TGG + chr4_1:27115753-27115772 Msa0542340:CDS 30.0%
! TTTGGAATTGTTTCGATGAA+TGG + chr4_1:27115822-27115841 Msa0542340:CDS 30.0%
AAGAGTTCCTCTAATTGATA+AGG + chr4_1:27116240-27116259 Msa0542340:CDS 30.0%
AGAGATAAGAACATAAGACT+AGG - chr4_1:27116530-27116549 None:intergenic 30.0%
GTTCTTATCTCTTTCTTAAG+TGG + chr4_1:27116538-27116557 Msa0542340:intron 30.0%
TCTCTTTCTTAAGTGGAAAT+AGG + chr4_1:27116545-27116564 Msa0542340:intron 30.0%
! ATTTTTCCCACCATTTTCTT+TGG + chr4_1:27116769-27116788 Msa0542340:intron 30.0%
! TTTTTCCCACCATTTTCTTT+GGG + chr4_1:27116770-27116789 Msa0542340:intron 30.0%
GTTCTTTACTTGTTCACTTA+GGG - chr4_1:27116924-27116943 None:intergenic 30.0%
AGTTCTTTACTTGTTCACTT+AGG - chr4_1:27116925-27116944 None:intergenic 30.0%
! AAACCAAACAGCAAAAGTTT+TGG - chr4_1:27117072-27117091 None:intergenic 30.0%
!!! AAAACTTTTGCTGTTTGGTT+TGG + chr4_1:27117071-27117090 Msa0542340:intron 30.0%
AAATATATCCACGAAACTGA+TGG - chr4_1:27117319-27117338 None:intergenic 30.0%
ACTGTGAAAAAAACAATGTG+AGG + chr4_1:27117392-27117411 Msa0542340:intron 30.0%
CGCTATACTGTGAATTTATT+TGG - chr4_1:27117633-27117652 None:intergenic 30.0%
CTTTGTAATGCAAGTTTGTA+AGG + chr4_1:27117655-27117674 Msa0542340:intron 30.0%
AAATGTTGTAGATCTTGTGA+TGG + chr4_1:27117737-27117756 Msa0542340:intron 30.0%
TTTGTCAACCATAGAATCAA+CGG - chr4_1:27117903-27117922 None:intergenic 30.0%
TGATTCTATGGTTGACAAAT+TGG + chr4_1:27117904-27117923 Msa0542340:intron 30.0%
GATCAATTGATCAATACTCA+TGG + chr4_1:27118201-27118220 Msa0542340:intron 30.0%
TCTTTAATTGTTCTTCCCAT+GGG - chr4_1:27118259-27118278 None:intergenic 30.0%
ATCTTTAATTGTTCTTCCCA+TGG - chr4_1:27118260-27118279 None:intergenic 30.0%
ACACTTTCATCTTCATTTCA+AGG + chr4_1:27118307-27118326 Msa0542340:CDS 30.0%
AGGTATTCCTTATACATGTT+TGG + chr4_1:27118327-27118346 Msa0542340:intron 30.0%
! TCCTTATACATGTTTGGAAT+TGG + chr4_1:27118333-27118352 Msa0542340:intron 30.0%
TCCAATTCCAAACATGTATA+AGG - chr4_1:27118337-27118356 None:intergenic 30.0%
TCAAGCATTCATGTAGTAAT+GGG + chr4_1:27118375-27118394 Msa0542340:intron 30.0%
TAGCTTAATCAACATATGAC+TGG - chr4_1:27118429-27118448 None:intergenic 30.0%
!!! TCGCAACATTTTGAAACTAA+GGG - chr4_1:27118685-27118704 None:intergenic 30.0%
!!! ATCGCAACATTTTGAAACTA+AGG - chr4_1:27118686-27118705 None:intergenic 30.0%
! GTTTCAAAATGTTGCGATTT+TGG + chr4_1:27118688-27118707 Msa0542340:intron 30.0%
GCTTATTTCCCTAAAGATAA+AGG + chr4_1:27118843-27118862 Msa0542340:intron 30.0%
!! CTTTTGACTCTCTAACTTTA+TGG - chr4_1:27118886-27118905 None:intergenic 30.0%
ACATGTTTCCTTAAAGATAG+AGG + chr4_1:27118907-27118926 Msa0542340:intron 30.0%
TCAATTCGATTATCATCCAA+AGG + chr4_1:27119071-27119090 Msa0542340:intron 30.0%
TGGTAGTTGTACATAAATGT+AGG - chr4_1:27119147-27119166 None:intergenic 30.0%
TATGAAGGATTGTGTAGATA+TGG + chr4_1:27119224-27119243 Msa0542340:intron 30.0%
AGTAATTAAAGTCATGATGG+TGG - chr4_1:27119440-27119459 None:intergenic 30.0%
TTAATTACTTCATGGGCATT+CGG + chr4_1:27119451-27119470 Msa0542340:CDS 30.0%
!!! TGTTTACTTGAGAGCATTTT+TGG + chr4_1:27119651-27119670 Msa0542340:three_prime_UTR 30.0%
TTCAATAGTTACCCTTTCTA+AGG - chr4_1:27119695-27119714 None:intergenic 30.0%
AAAAGAAAATGGTCTTTCCC+GGG - chr4_1:27114953-27114972 None:intergenic 35.0%
GAAAAGAAAATGGTCTTTCC+CGG - chr4_1:27114954-27114973 None:intergenic 35.0%
! TTGGGTTCTCATTTTCTTCA+AGG + chr4_1:27115483-27115502 Msa0542340:five_prime_UTR 35.0%
TATGGTGAAGAAAGCAATCA+AGG - chr4_1:27115591-27115610 None:intergenic 35.0%
! ATGGTACAATAGGTGTTGTA+TGG - chr4_1:27115609-27115628 None:intergenic 35.0%
TATCACACGGATTCCATAAA+CGG - chr4_1:27115769-27115788 None:intergenic 35.0%
! TCAACTGTTTCTCTATCACA+CGG - chr4_1:27115782-27115801 None:intergenic 35.0%
ATTTCACTCTGAGTGATCTT+TGG + chr4_1:27115804-27115823 Msa0542340:CDS 35.0%
AGAGGTAAGGAACATAGTAT+TGG - chr4_1:27115901-27115920 None:intergenic 35.0%
ATTTGAATTGCAGAGAGGTA+AGG - chr4_1:27115914-27115933 None:intergenic 35.0%
! CACAGAAGAAAAAGTGCATT+TGG - chr4_1:27115988-27116007 None:intergenic 35.0%
!!! GCACTTTTTCTTCTGTGATA+CGG + chr4_1:27115991-27116010 Msa0542340:intron 35.0%
! TTCAGAGAAGAGATTGATTC+TGG + chr4_1:27116046-27116065 Msa0542340:intron 35.0%
GGAAATAAAGATGACCCAAT+CGG - chr4_1:27116192-27116211 None:intergenic 35.0%
ATTAGAGGAACTCTTCCATA+TGG - chr4_1:27116235-27116254 None:intergenic 35.0%
AAGATGAGAGTCCATAGATT+AGG + chr4_1:27116360-27116379 Msa0542340:intron 35.0%
AGTGACAATTTATTAGGCAG+AGG - chr4_1:27116502-27116521 None:intergenic 35.0%
! GTTTTCCCAAAGAAAATGGT+GGG - chr4_1:27116778-27116797 None:intergenic 35.0%
! AGTTTTCCCAAAGAAAATGG+TGG - chr4_1:27116779-27116798 None:intergenic 35.0%
!!! CAAACAGCAAAAGTTTTGGA+AGG - chr4_1:27117068-27117087 None:intergenic 35.0%
!!! CTTCCAAAACTTTTGCTGTT+TGG + chr4_1:27117066-27117085 Msa0542340:intron 35.0%
AATGCAAGTTTGTAAGGTGT+TGG + chr4_1:27117661-27117680 Msa0542340:intron 35.0%
ACGTTTGTCTTGTACATTGT+AGG - chr4_1:27117715-27117734 None:intergenic 35.0%
GCTAACCCATTAATCTGAAA+GGG - chr4_1:27117935-27117954 None:intergenic 35.0%
TGCTAACCCATTAATCTGAA+AGG - chr4_1:27117936-27117955 None:intergenic 35.0%
!! TTTTAAGTGACATCAACCCT+GGG - chr4_1:27117967-27117986 None:intergenic 35.0%
CCATGGGAATATGATATATC+GGG - chr4_1:27118243-27118262 None:intergenic 35.0%
CCCATGGGAATATGATATAT+CGG - chr4_1:27118244-27118263 None:intergenic 35.0%
CCGATATATCATATTCCCAT+GGG + chr4_1:27118241-27118260 Msa0542340:CDS 35.0%
! GAAATGAAGATGAAAGTGTG+TGG - chr4_1:27118306-27118325 None:intergenic 35.0%
GTCAAGCATTCATGTAGTAA+TGG + chr4_1:27118374-27118393 Msa0542340:intron 35.0%
!!! GCAACATTTTGAAACTAAGG+GGG - chr4_1:27118683-27118702 None:intergenic 35.0%
!!! CGCAACATTTTGAAACTAAG+GGG - chr4_1:27118684-27118703 None:intergenic 35.0%
TCGATCATTGTTATGCAACA+AGG + chr4_1:27119033-27119052 Msa0542340:intron 35.0%
AATCATGAGAACTAGACCTT+TGG - chr4_1:27119090-27119109 None:intergenic 35.0%
!! TATGGACCTTGATAATGAGA+TGG + chr4_1:27119242-27119261 Msa0542340:CDS 35.0%
TCTCTTCCATCTCATTATCA+AGG - chr4_1:27119251-27119270 None:intergenic 35.0%
! ATAGTGAAACCAGCTTTTCT+TGG - chr4_1:27119380-27119399 None:intergenic 35.0%
TTCATGGTTGAAGCAACTTA+AGG + chr4_1:27119413-27119432 Msa0542340:CDS 35.0%
CCTAAAAAAGAAGAGTTAGG+AGG - chr4_1:27119532-27119551 None:intergenic 35.0%
!!! CCTCCTAACTCTTCTTTTTT+AGG + chr4_1:27119529-27119548 Msa0542340:three_prime_UTR 35.0%
!! TTTGTTGTTGAGCACTTGTT+TGG + chr4_1:27119556-27119575 Msa0542340:three_prime_UTR 35.0%
! ACTTGTTAGACTCCTTAGAA+AGG + chr4_1:27119680-27119699 Msa0542340:three_prime_UTR 35.0%
CTTGTTAGACTCCTTAGAAA+GGG + chr4_1:27119681-27119700 Msa0542340:three_prime_UTR 35.0%
AGGATTAAGTGTGTGTGTGA+CGG - chr4_1:27114914-27114933 None:intergenic 40.0%
CAATGAGGTCAATGCAATCT+AGG + chr4_1:27115560-27115579 Msa0542340:exon 40.0%
ACGGATTCCATAAACGGTTA+AGG - chr4_1:27115763-27115782 None:intergenic 40.0%
! ATTCTGGTGATAGTGAGACA+AGG + chr4_1:27116062-27116081 Msa0542340:CDS 40.0%
! TTCTGGTGATAGTGAGACAA+GGG + chr4_1:27116063-27116082 Msa0542340:CDS 40.0%
ATAGCGAGTGTGATAAGCTA+TGG + chr4_1:27116113-27116132 Msa0542340:CDS 40.0%
CTATGGACATCATCAGAAGA+GGG + chr4_1:27116130-27116149 Msa0542340:CDS 40.0%
TGGCATTTGAATGACCGATT+GGG + chr4_1:27116175-27116194 Msa0542340:CDS 40.0%
CTACTGCTTTGCCTAATCTA+TGG - chr4_1:27116374-27116393 None:intergenic 40.0%
CATAGATTAGGCAAAGCAGT+AGG + chr4_1:27116372-27116391 Msa0542340:intron 40.0%
GCAGAGGAAAATGAGATTTC+TGG - chr4_1:27116486-27116505 None:intergenic 40.0%
! ATTCCCACGAACATTTTACC+CGG + chr4_1:27116804-27116823 Msa0542340:intron 40.0%
!! GTTTTGTTCCATCAGTTTCG+TGG + chr4_1:27117308-27117327 Msa0542340:intron 40.0%
TGTTGGAGTGTGTTTGATGT+GGG + chr4_1:27117678-27117697 Msa0542340:intron 40.0%
!! TAGCACAACCGTTGATTCTA+TGG + chr4_1:27117854-27117873 Msa0542340:intron 40.0%
TCCCTCCCTTTCAGATTAAT+GGG + chr4_1:27117927-27117946 Msa0542340:intron 40.0%
ACCCATTAATCTGAAAGGGA+GGG - chr4_1:27117931-27117950 None:intergenic 40.0%
AACCCATTAATCTGAAAGGG+AGG - chr4_1:27117932-27117951 None:intergenic 40.0%
!! CTTTTAAGTGACATCAACCC+TGG - chr4_1:27117968-27117987 None:intergenic 40.0%
TTGATCTATCACCAGCAAGT+TGG + chr4_1:27117990-27118009 Msa0542340:CDS 40.0%
CCCGATATATCATATTCCCA+TGG + chr4_1:27118240-27118259 Msa0542340:CDS 40.0%
! ATGAAAGTGTGTGGTAAGTG+AGG - chr4_1:27118297-27118316 None:intergenic 40.0%
ATGTAGGAGTGAATCGTGTA+TGG - chr4_1:27119131-27119150 None:intergenic 40.0%
GTGCAAAAAGCTAATAGGCA+TGG - chr4_1:27119167-27119186 None:intergenic 40.0%
TGGAAGAGACTCAAGAGAAA+AGG + chr4_1:27119262-27119281 Msa0542340:CDS 40.0%
AGAGACTCAAGAGAAAAGGA+AGG + chr4_1:27119266-27119285 Msa0542340:CDS 40.0%
ACTCAAGAGAAAAGGAAGGA+AGG + chr4_1:27119270-27119289 Msa0542340:CDS 40.0%
TTGTACGTGGCTAAACCAAA+TGG - chr4_1:27119315-27119334 None:intergenic 40.0%
TATGTAGTGTGGCAGATTCA+TGG + chr4_1:27119397-27119416 Msa0542340:CDS 40.0%
TGTATAGCCTCTTTGTGAAG+AGG + chr4_1:27119725-27119744 Msa0542340:three_prime_UTR 40.0%
CAAAGAACCTCTTCACAAAG+AGG - chr4_1:27119735-27119754 None:intergenic 40.0%
TGTGTGTAGAGAGGTAGATT+AGG + chr4_1:27119753-27119772 Msa0542340:three_prime_UTR 40.0%
! TTCGATGAATGGAGTGCCTA+TGG + chr4_1:27115833-27115852 Msa0542340:CDS 45.0%
GCTATGGACATCATCAGAAG+AGG + chr4_1:27116129-27116148 Msa0542340:CDS 45.0%
CATCTGAGCAAGATAGTCTC+TGG + chr4_1:27116155-27116174 Msa0542340:CDS 45.0%
CTGGCATTTGAATGACCGAT+TGG + chr4_1:27116174-27116193 Msa0542340:CDS 45.0%
TTGCCGGGTAAAATGTTCGT+GGG - chr4_1:27116810-27116829 None:intergenic 45.0%
ATTGCCGGGTAAAATGTTCG+TGG - chr4_1:27116811-27116830 None:intergenic 45.0%
GTGTTGGAGTGTGTTTGATG+TGG + chr4_1:27117677-27117696 Msa0542340:intron 45.0%
GTTGGAGTGTGTTTGATGTG+GGG + chr4_1:27117679-27117698 Msa0542340:intron 45.0%
GTCCCTCCCTTTCAGATTAA+TGG + chr4_1:27117926-27117945 Msa0542340:intron 45.0%
GGTTAGCAGAAAGATACCCA+GGG + chr4_1:27117948-27117967 Msa0542340:CDS 45.0%
! TCTATCACCAGCAAGTTGGA+TGG + chr4_1:27117994-27118013 Msa0542340:CDS 45.0%
! AGGGGGAGAAAAGTGCAATT+TGG - chr4_1:27118666-27118685 None:intergenic 45.0%
!! CAATTTTGGCCCCCTGTTTT+GGG - chr4_1:27118792-27118811 None:intergenic 45.0%
GAGAAAAGGAAGGAAGGTGA+AGG + chr4_1:27119276-27119295 Msa0542340:CDS 45.0%
GGCATCTCATTGCAACCATT+TGG + chr4_1:27119297-27119316 Msa0542340:CDS 45.0%
TTAGCCACGTACAAGATGCA+AGG + chr4_1:27119321-27119340 Msa0542340:CDS 45.0%
! GCTGGTTTCACTATGTAGTG+TGG + chr4_1:27119386-27119405 Msa0542340:CDS 45.0%
GAGGTTCTTTGTGTGTAGAG+AGG + chr4_1:27119744-27119763 Msa0542340:three_prime_UTR 45.0%
GTGTAGAGAGGTAGATTAGG+AGG + chr4_1:27119756-27119775 Msa0542340:three_prime_UTR 45.0%
!! ACTAAAAATTTAAATTTATA+AGG + chr4_1:27117486-27117505 Msa0542340:intron 5.0%
!!! ATTAAAAGTTTTTTTTTTTA+GGG - chr4_1:27118520-27118539 None:intergenic 5.0%
!!! AAAATTTTCATTTTTTAATA+GGG + chr4_1:27118932-27118951 Msa0542340:intron 5.0%
!! AAAAAATATTAAAATTATGA+AGG + chr4_1:27119209-27119228 Msa0542340:intron 5.0%
GTGTGACGGTGATTGAGGAA+AGG - chr4_1:27114900-27114919 None:intergenic 50.0%
TGTGTGTGTGACGGTGATTG+AGG - chr4_1:27114905-27114924 None:intergenic 50.0%
GATTGGAACTCCAACGCCAT+AGG - chr4_1:27115852-27115871 None:intergenic 50.0%
! GGGTTAGCAGAAAGATACCC+AGG + chr4_1:27117947-27117966 Msa0542340:CDS 50.0%
! CAAGTTGGATGGCAGTTGCT+TGG + chr4_1:27118005-27118024 Msa0542340:CDS 50.0%
!! GCAATTTTGGCCCCCTGTTT+TGG - chr4_1:27118793-27118812 None:intergenic 50.0%
!! TTGTGGGGCTCTGGAAAATG+TGG + chr4_1:27119348-27119367 Msa0542340:CDS 50.0%
!! GGGCTCTGGAAAATGTGGTA+GGG + chr4_1:27119353-27119372 Msa0542340:CDS 50.0%
TGGTAGGGACCAAGAAAAGC+TGG + chr4_1:27119368-27119387 Msa0542340:CDS 50.0%
TACTTCATGGGCATTCGGCA+TGG + chr4_1:27119456-27119475 Msa0542340:CDS 50.0%
! GAATGGAGTGCCTATGGCGT+TGG + chr4_1:27115839-27115858 Msa0542340:CDS 55.0%
GCAACTGCCATCCAACTTGC+TGG - chr4_1:27118004-27118023 None:intergenic 55.0%
ACGCCACGTGTCCCAAAACA+GGG + chr4_1:27118778-27118797 Msa0542340:intron 55.0%
!! GGGGCTCTGGAAAATGTGGT+AGG + chr4_1:27119352-27119371 Msa0542340:CDS 55.0%
GGGCATTCGGCATGGCTAAA+AGG + chr4_1:27119464-27119483 Msa0542340:exon 55.0%
GACGCCACGTGTCCCAAAAC+AGG + chr4_1:27118777-27118796 Msa0542340:intron 60.0%
CGCCACGTGTCCCAAAACAG+GGG + chr4_1:27118779-27118798 Msa0542340:intron 60.0%
GCCACGTGTCCCAAAACAGG+GGG + chr4_1:27118780-27118799 Msa0542340:intron 60.0%
!!! GCCCCCTGTTTTGGGACACG+TGG - chr4_1:27118784-27118803 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 27114845 27119850 27114845 ID=Msa0542340;Name=Msa0542340
chr4_1 mRNA 27114845 27119850 27114845 ID=Msa0542340-mRNA-1;Parent=Msa0542340;Name=Msa0542340-mRNA-1;_AED=0.04;_eAED=0.04;_QI=691|1|1|1|0.83|0.71|7|368|307
chr4_1 exon 27114845 27115289 27114845 ID=Msa0542340-mRNA-1:exon:7302;Parent=Msa0542340-mRNA-1
chr4_1 exon 27115316 27115645 27115316 ID=Msa0542340-mRNA-1:exon:7303;Parent=Msa0542340-mRNA-1
chr4_1 exon 27115746 27115954 27115746 ID=Msa0542340-mRNA-1:exon:7304;Parent=Msa0542340-mRNA-1
chr4_1 exon 27116051 27116261 27116051 ID=Msa0542340-mRNA-1:exon:7305;Parent=Msa0542340-mRNA-1
chr4_1 exon 27117941 27118026 27117941 ID=Msa0542340-mRNA-1:exon:7306;Parent=Msa0542340-mRNA-1
chr4_1 exon 27118237 27118328 27118237 ID=Msa0542340-mRNA-1:exon:7307;Parent=Msa0542340-mRNA-1
chr4_1 exon 27119241 27119850 27119241 ID=Msa0542340-mRNA-1:exon:7308;Parent=Msa0542340-mRNA-1
chr4_1 five_prime_UTR 27114845 27115289 27114845 ID=Msa0542340-mRNA-1:five_prime_utr;Parent=Msa0542340-mRNA-1
chr4_1 five_prime_UTR 27115316 27115561 27115316 ID=Msa0542340-mRNA-1:five_prime_utr;Parent=Msa0542340-mRNA-1
chr4_1 CDS 27115562 27115645 27115562 ID=Msa0542340-mRNA-1:cds;Parent=Msa0542340-mRNA-1
chr4_1 CDS 27115746 27115954 27115746 ID=Msa0542340-mRNA-1:cds;Parent=Msa0542340-mRNA-1
chr4_1 CDS 27116051 27116261 27116051 ID=Msa0542340-mRNA-1:cds;Parent=Msa0542340-mRNA-1
chr4_1 CDS 27117941 27118026 27117941 ID=Msa0542340-mRNA-1:cds;Parent=Msa0542340-mRNA-1
chr4_1 CDS 27118237 27118328 27118237 ID=Msa0542340-mRNA-1:cds;Parent=Msa0542340-mRNA-1
chr4_1 CDS 27119241 27119482 27119241 ID=Msa0542340-mRNA-1:cds;Parent=Msa0542340-mRNA-1
chr4_1 three_prime_UTR 27119483 27119850 27119483 ID=Msa0542340-mRNA-1:three_prime_utr;Parent=Msa0542340-mRNA-1
Gene Sequence

>Msa0542340

ATGAGGTCAATGCAATCTAGGTCTAACCTTGATTGCTTTCTTCACCATACAACACCTATTGTACCATCTAAGTTTCTACAAAAGCACGAGATTAGAAACCTTAACCGTTTATGGAATCCGTGTGATAGAGAAACAGTTGAATATTTCACTCTGAGTGATCTTTGGAATTGTTTCGATGAATGGAGTGCCTATGGCGTTGGAGTTCCAATCAACTTTAAAAATGAGGAGACACTTGTCCAATACTATGTTCCTTACCTCTCTGCAATTCAAATATTTACAAGCAATAATTTCAGAGAAGAGATTGATTCTGGTGATAGTGAGACAAGGGATTCGTTTAGCGATTCTTACAGCGATGATAGCGAGTGTGATAAGCTATGGACATCATCAGAAGAGGGAGCATCTGAGCAAGATAGTCTCTGGCATTTGAATGACCGATTGGGTCATCTTTATTTCCAGTATTTTGAAAAATCAACTCCATATGGAAGAGTTCCTCTAATTGATAAGATTAATGGGTTAGCAGAAAGATACCCAGGGTTGATGTCACTTAAAAGTGTTGATCTATCACCAGCAAGTTGGATGGCAGTTGCTTGGTACCCGATATATCATATTCCCATGGGAAGAACAATTAAAGATCTTTCAACATGTTTCCTCACTTACCACACACTTTCATCTTCATTTCAAGATATGGACCTTGATAATGAGATGGAAGAGACTCAAGAGAAAAGGAAGGAAGGTGAAGGCATCTCATTGCAACCATTTGGTTTAGCCACGTACAAGATGCAAGGGAATTTGTGGGGCTCTGGAAAATGTGGTAGGGACCAAGAAAAGCTGGTTTCACTATGTAGTGTGGCAGATTCATGGTTGAAGCAACTTAAGGTCCACCATCATGACTTTAATTACTTCATGGGCATTCGGCATGGCTAA
Protein sequence

>Msa0542340

MRSMQSRSNLDCFLHHTTPIVPSKFLQKHEIRNLNRLWNPCDRETVEYFTLSDLWNCFDEWSAYGVGVPINFKNEETLVQYYVPYLSAIQIFTSNNFREEIDSGDSETRDSFSDSYSDDSECDKLWTSSEEGASEQDSLWHLNDRLGHLYFQYFEKSTPYGRVPLIDKINGLAERYPGLMSLKSVDLSPASWMAVAWYPIYHIPMGRTIKDLSTCFLTYHTLSSSFQDMDLDNEMEETQEKRKEGEGISLQPFGLATYKMQGNLWGSGKCGRDQEKLVSLCSVADSWLKQLKVHHHDFNYFMGIRHG*