Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0542260 | XP_013455499.1 | 97.068 | 307 | 8 | 1 | 1 | 307 | 1 | 306 | 0.0 | 625 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0542260 | A0A072UUJ2 | 97.068 | 307 | 8 | 1 | 1 | 307 | 1 | 306 | 0.0 | 625 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020410 | Msa0542260 | 0.829150 | 6.045979e-55 | -8.615850e-47 |
| Msa0037880 | Msa0542260 | 0.816801 | 4.584957e-52 | -8.615850e-47 |
| Msa0043980 | Msa0542260 | 0.848790 | 4.895558e-60 | -8.615850e-47 |
| Msa0044000 | Msa0542260 | 0.853441 | 2.385125e-61 | -8.615850e-47 |
| Msa0044260 | Msa0542260 | 0.812965 | 3.251527e-51 | -8.615850e-47 |
| Msa0044330 | Msa0542260 | 0.819580 | 1.078069e-52 | -8.615850e-47 |
| Msa0076320 | Msa0542260 | 0.807381 | 5.197970e-50 | -8.615850e-47 |
| Msa0083280 | Msa0542260 | 0.805292 | 1.432607e-49 | -8.615850e-47 |
| Msa0090570 | Msa0542260 | 0.820746 | 5.828309e-53 | -8.615850e-47 |
| Msa0101830 | Msa0542260 | 0.811613 | 6.413917e-51 | -8.615850e-47 |
| Msa0104240 | Msa0542260 | 0.802974 | 4.348819e-49 | -8.615850e-47 |
| Msa0106850 | Msa0542260 | 0.823631 | 1.248633e-53 | -8.615850e-47 |
| Msa0115270 | Msa0542260 | 0.800707 | 1.270191e-48 | -8.615850e-47 |
| Msa0123560 | Msa0542260 | 0.806097 | 9.704533e-50 | -8.615850e-47 |
| Msa0127650 | Msa0542260 | 0.805283 | 1.438718e-49 | -8.615850e-47 |
| Msa0127800 | Msa0542260 | 0.858608 | 7.330017e-63 | -8.615850e-47 |
| Msa0138020 | Msa0542260 | 0.811438 | 7.001717e-51 | -8.615850e-47 |
| Msa0143930 | Msa0542260 | 0.811706 | 6.121158e-51 | -8.615850e-47 |
| Msa0148080 | Msa0542260 | 0.816928 | 4.293320e-52 | -8.615850e-47 |
| Msa0151180 | Msa0542260 | 0.807018 | 6.202478e-50 | -8.615850e-47 |
| Msa0191940 | Msa0542260 | 0.809194 | 2.134866e-50 | -8.615850e-47 |
| Msa0194950 | Msa0542260 | -0.811450 | 6.957708e-51 | -8.615850e-47 |
| Msa0196670 | Msa0542260 | 0.809092 | 2.245175e-50 | -8.615850e-47 |
| Msa0206010 | Msa0542260 | 0.800296 | 1.540102e-48 | -8.615850e-47 |
| Msa0217680 | Msa0542260 | 0.822865 | 1.884216e-53 | -8.615850e-47 |
| Msa0218370 | Msa0542260 | 0.836763 | 7.735109e-57 | -8.615850e-47 |
| Msa0234050 | Msa0542260 | 0.815407 | 9.394258e-52 | -8.615850e-47 |
| Msa0376910 | Msa0542260 | 0.831587 | 1.534154e-55 | -8.615850e-47 |
| Msa0383800 | Msa0542260 | 0.816918 | 4.315651e-52 | -8.615850e-47 |
| Msa0387820 | Msa0542260 | 0.818032 | 2.422580e-52 | -8.615850e-47 |
| Msa0395750 | Msa0542260 | 0.800151 | 1.648349e-48 | -8.615850e-47 |
| Msa0398670 | Msa0542260 | 0.822013 | 2.972547e-53 | -8.615850e-47 |
| Msa0434180 | Msa0542260 | 0.805163 | 1.524058e-49 | -8.615850e-47 |
| Msa0454360 | Msa0542260 | 0.824911 | 6.242968e-54 | -8.615850e-47 |
| Msa0471900 | Msa0542260 | 0.808511 | 2.988557e-50 | -8.615850e-47 |
| Msa0475600 | Msa0542260 | 0.806933 | 6.465883e-50 | -8.615850e-47 |
| Msa0477080 | Msa0542260 | 0.806013 | 1.010992e-49 | -8.615850e-47 |
| Msa0243480 | Msa0542260 | 0.824726 | 6.903974e-54 | -8.615850e-47 |
| Msa0256330 | Msa0542260 | 0.811093 | 8.315866e-51 | -8.615850e-47 |
| Msa0272300 | Msa0542260 | 0.800246 | 1.576932e-48 | -8.615850e-47 |
| Msa0278580 | Msa0542260 | 0.800956 | 1.130008e-48 | -8.615850e-47 |
| Msa0280090 | Msa0542260 | 0.806190 | 9.279330e-50 | -8.615850e-47 |
| Msa0287410 | Msa0542260 | 0.817956 | 2.520329e-52 | -8.615850e-47 |
| Msa0291500 | Msa0542260 | 0.802376 | 5.777325e-49 | -8.615850e-47 |
| Msa0295330 | Msa0542260 | 0.817946 | 2.532537e-52 | -8.615850e-47 |
| Msa0305410 | Msa0542260 | 0.863366 | 2.620835e-64 | -8.615850e-47 |
| Msa0308270 | Msa0542260 | 0.807087 | 5.999071e-50 | -8.615850e-47 |
| Msa0316390 | Msa0542260 | 0.809184 | 2.145518e-50 | -8.615850e-47 |
| Msa0321080 | Msa0542260 | 0.810854 | 9.370526e-51 | -8.615850e-47 |
| Msa0342410 | Msa0542260 | 0.822856 | 1.893765e-53 | -8.615850e-47 |
| Msa0344910 | Msa0542260 | 0.814628 | 1.398601e-51 | -8.615850e-47 |
| Msa0344980 | Msa0542260 | 0.804279 | 2.331169e-49 | -8.615850e-47 |
| Msa0357830 | Msa0542260 | 0.800910 | 1.154379e-48 | -8.615850e-47 |
| Msa0363790 | Msa0542260 | 0.813592 | 2.367072e-51 | -8.615850e-47 |
| Msa0497210 | Msa0542260 | 0.801299 | 9.614893e-49 | -8.615850e-47 |
| Msa0512340 | Msa0542260 | 0.808725 | 2.689959e-50 | -8.615850e-47 |
| Msa0521270 | Msa0542260 | 0.819190 | 1.322647e-52 | -8.615850e-47 |
| Msa0530560 | Msa0542260 | 0.845445 | 4.042287e-59 | -8.615850e-47 |
| Msa0531530 | Msa0542260 | 0.819808 | 9.561653e-53 | -8.615850e-47 |
| Msa0542260 | Msa0542290 | 0.807643 | 4.573793e-50 | -8.615850e-47 |
| Msa0542260 | Msa0542340 | 0.883334 | 4.901369e-71 | -8.615850e-47 |
| Msa0542260 | Msa0548240 | 0.824790 | 6.667161e-54 | -8.615850e-47 |
| Msa0542260 | Msa0554740 | 0.800324 | 1.520209e-48 | -8.615850e-47 |
| Msa0542260 | Msa0564850 | 0.820405 | 6.978474e-53 | -8.615850e-47 |
| Msa0542260 | Msa0588260 | 0.802224 | 6.208787e-49 | -8.615850e-47 |
| Msa0542260 | Msa0602390 | 0.800076 | 1.707776e-48 | -8.615850e-47 |
| Msa0542260 | Msa0604290 | 0.818247 | 2.165280e-52 | -8.615850e-47 |
| Msa0542260 | Msa0607050 | 0.805067 | 1.596581e-49 | -8.615850e-47 |
| Msa0542260 | Msa0608160 | 0.808863 | 2.513155e-50 | -8.615850e-47 |
| Msa0542260 | Msa0641670 | 0.804259 | 2.353801e-49 | -8.615850e-47 |
| Msa0542260 | Msa0648080 | 0.811025 | 8.604148e-51 | -8.615850e-47 |
| Msa0542260 | Msa0665860 | 0.812717 | 3.684246e-51 | -8.615850e-47 |
| Msa0542260 | Msa0677520 | 0.861469 | 1.003595e-63 | -8.615850e-47 |
| Msa0542260 | Msa0709400 | 0.810294 | 1.237991e-50 | -8.615850e-47 |
| Msa0542260 | Msa0711100 | 0.806208 | 9.199131e-50 | -8.615850e-47 |
| Msa0542260 | Msa0737600 | 0.807004 | 6.247314e-50 | -8.615850e-47 |
| Msa0542260 | Msa0747060 | 0.816618 | 5.039177e-52 | -8.615850e-47 |
| Msa0542260 | Msa0750850 | 0.809306 | 2.019831e-50 | -8.615850e-47 |
| Msa0542260 | Msa0793380 | 0.806590 | 7.641470e-50 | -8.615850e-47 |
| Msa0542260 | Msa0808080 | 0.813861 | 2.065564e-51 | -8.615850e-47 |
| Msa0542260 | Msa0820850 | 0.811674 | 6.222021e-51 | -8.615850e-47 |
| Msa0542260 | Msa0832150 | 0.818962 | 1.490928e-52 | -8.615850e-47 |
| Msa0542260 | Msa0832340 | 0.802046 | 6.756897e-49 | -8.615850e-47 |
| Msa0542260 | Msa0849030 | 0.836814 | 7.505294e-57 | -8.615850e-47 |
| Msa0542260 | Msa0849040 | 0.825654 | 4.166232e-54 | -8.615850e-47 |
| Msa0542260 | Msa0861130 | 0.807915 | 4.002998e-50 | -8.615850e-47 |
| Msa0542260 | Msa0861570 | 0.802286 | 6.029632e-49 | -8.615850e-47 |
| Msa0542260 | Msa0888260 | 0.840640 | 7.698444e-58 | -8.615850e-47 |
| Msa0542260 | Msa0958920 | 0.808437 | 3.098337e-50 | -8.615850e-47 |
| Msa0542260 | Msa0963270 | 0.805938 | 1.048056e-49 | -8.615850e-47 |
| Msa0542260 | Msa1023180 | 0.810125 | 1.346302e-50 | -8.615850e-47 |
| Msa0542260 | Msa1029050 | 0.808206 | 3.469937e-50 | -8.615850e-47 |
| Msa0542260 | Msa1034150 | 0.819379 | 1.197747e-52 | -8.615850e-47 |
| Msa0542260 | Msa1037420 | 0.818092 | 2.347451e-52 | -8.615850e-47 |
| Msa0542260 | Msa1039800 | 0.805461 | 1.320227e-49 | -8.615850e-47 |
| Msa0542260 | Msa1043050 | 0.811344 | 7.336041e-51 | -8.615850e-47 |
| Msa0542260 | Msa1058750 | 0.818293 | 2.114656e-52 | -8.615850e-47 |
| Msa0542260 | Msa1071320 | 0.805906 | 1.064837e-49 | -8.615850e-47 |
| Msa0542260 | Msa1077130 | 0.820514 | 6.589144e-53 | -8.615850e-47 |
| Msa0542260 | Msa1077200 | 0.817947 | 2.531435e-52 | -8.615850e-47 |
| Msa0542260 | Msa1087850 | 0.808145 | 3.576697e-50 | -8.615850e-47 |
| Msa0542260 | Msa1089460 | 0.803743 | 3.012892e-49 | -8.615850e-47 |
| Msa0542260 | Msa1109680 | 0.820986 | 5.131208e-53 | -8.615850e-47 |
| Msa0542260 | Msa1114410 | 0.807412 | 5.118765e-50 | -8.615850e-47 |
| Msa0542260 | Msa1117240 | 0.824817 | 6.572000e-54 | -8.615850e-47 |
| Msa0542260 | Msa1122150 | 0.822188 | 2.707090e-53 | -8.615850e-47 |
| Msa0542260 | Msa1124960 | 0.804567 | 2.030779e-49 | -8.615850e-47 |
| Msa0542260 | Msa1150710 | 0.822854 | 1.895718e-53 | -8.615850e-47 |
| Msa0542260 | Msa1160560 | 0.815697 | 8.096615e-52 | -8.615850e-47 |
| Msa0542260 | Msa1167340 | 0.810613 | 1.056441e-50 | -8.615850e-47 |
| Msa0542260 | Msa1174040 | 0.843259 | 1.563814e-58 | -8.615850e-47 |
| Msa0542260 | Msa1181250 | 0.821813 | 3.307315e-53 | -8.615850e-47 |
| Msa0542260 | Msa1181330 | 0.810159 | 1.324305e-50 | -8.615850e-47 |
| Msa0542260 | Msa1208380 | 0.821587 | 3.730195e-53 | -8.615850e-47 |
| Msa0542260 | Msa1225130 | 0.802634 | 5.111896e-49 | -8.615850e-47 |
| Msa0542260 | Msa1231840 | 0.819570 | 1.083798e-52 | -8.615850e-47 |
| Msa0542260 | Msa1238840 | 0.832461 | 9.328269e-56 | -8.615850e-47 |
| Msa0542260 | Msa1253020 | 0.808193 | 3.492385e-50 | -8.615850e-47 |
| Msa0542260 | Msa1254730 | 0.806190 | 9.277133e-50 | -8.615850e-47 |
| Msa0542260 | Msa1257750 | 0.817287 | 3.566108e-52 | -8.615850e-47 |
| Msa0542260 | Msa1279400 | 0.806539 | 7.831921e-50 | -8.615850e-47 |
| Msa0542260 | Msa1280320 | 0.847921 | 8.512944e-60 | -8.615850e-47 |
| Msa0542260 | Msa1280340 | 0.813539 | 2.431710e-51 | -8.615850e-47 |
| Msa0542260 | Msa1294820 | 0.806948 | 6.419184e-50 | -8.615850e-47 |
| Msa0542260 | Msa1305660 | 0.807542 | 4.804126e-50 | -8.615850e-47 |
| Msa0542260 | Msa1305700 | 0.803533 | 3.331727e-49 | -8.615850e-47 |
| Msa0542260 | Msa1329200 | 0.826020 | 3.410279e-54 | -8.615850e-47 |
| Msa0542260 | Msa1331320 | 0.811651 | 6.293600e-51 | -8.615850e-47 |
| Msa0542260 | Msa1341950 | 0.803132 | 4.033720e-49 | -8.615850e-47 |
| Msa0542260 | Msa1355890 | 0.801741 | 7.803611e-49 | -8.615850e-47 |
| Msa0542260 | Msa1373470 | 0.800235 | 1.585338e-48 | -8.615850e-47 |
| Msa0542260 | Msa1377080 | 0.800825 | 1.201882e-48 | -8.615850e-47 |
| Msa0542260 | Msa1385770 | 0.803186 | 3.930870e-49 | -8.615850e-47 |
| Msa0542260 | Msa1397120 | 0.810966 | 8.863192e-51 | -8.615850e-47 |
| Msa0542260 | Msa1403890 | 0.806950 | 6.414230e-50 | -8.615850e-47 |
| Msa0542260 | Msa1404550 | 0.801474 | 8.852311e-49 | -8.615850e-47 |
| Msa0542260 | Msa1409240 | 0.806170 | 9.366599e-50 | -8.615850e-47 |
| Msa0542260 | Msa1411020 | 0.806797 | 6.908961e-50 | -8.615850e-47 |
| Msa0542260 | Msa1412890 | 0.806416 | 8.313471e-50 | -8.615850e-47 |
| Msa0542260 | Msa1419840 | 0.810780 | 9.724333e-51 | -8.615850e-47 |
| Msa0542260 | Msa1420490 | 0.814838 | 1.256391e-51 | -8.615850e-47 |
| Msa0542260 | Msa1423390 | 0.815317 | 9.834870e-52 | -8.615850e-47 |
| Msa0542260 | Msa1424290 | 0.803422 | 3.512911e-49 | -8.615850e-47 |
| Msa0542260 | Msa1427230 | 0.811013 | 8.658438e-51 | -8.615850e-47 |
| Msa0542260 | Msa1434140 | 0.808738 | 2.671662e-50 | -8.615850e-47 |
| Msa0542260 | Msa1434350 | 0.806952 | 6.406608e-50 | -8.615850e-47 |
| Msa0542260 | Msa1434420 | -0.834912 | 2.278028e-56 | -8.615850e-47 |
| Msa0542260 | Msa1439320 | 0.804584 | 2.013635e-49 | -8.615850e-47 |
| Msa0542260 | Msa1440370 | 0.813734 | 2.203594e-51 | -8.615850e-47 |
| Msa0542260 | Msa1440810 | 0.816780 | 4.636379e-52 | -8.615850e-47 |
| Msa0542260 | Msa1444740 | 0.812909 | 3.343830e-51 | -8.615850e-47 |
| Msa0542260 | Msa1457620 | 0.820716 | 5.922394e-53 | -8.615850e-47 |
| Msa0542260 | Msa1460050 | 0.809770 | 1.605755e-50 | -8.615850e-47 |
| Msa0542260 | Msa1460830 | 0.802853 | 4.605520e-49 | -8.615850e-47 |
| Msa0542260 | Msa1462290 | 0.818436 | 1.961939e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0542260 | MtrunA17_Chr4g0022111 | 97.068 | 307 | 8 | 1 | 1 | 307 | 1 | 306 | 0.0 | 625 |
| Msa0542260 | MtrunA17_Chr2g0324081 | 77.705 | 305 | 63 | 2 | 8 | 307 | 10 | 314 | 2.80e-168 | 469 |
| Msa0542260 | MtrunA17_Chr1g0188731 | 44.109 | 331 | 142 | 10 | 9 | 301 | 13 | 338 | 9.97e-73 | 228 |
| Msa0542260 | MtrunA17_Chr8g0376071 | 39.577 | 331 | 161 | 7 | 5 | 301 | 51 | 376 | 3.48e-67 | 214 |
| Msa0542260 | MtrunA17_Chr4g0067961 | 38.788 | 330 | 165 | 7 | 2 | 301 | 65 | 387 | 7.20e-66 | 211 |
| Msa0542260 | MtrunA17_Chr1g0209341 | 38.298 | 329 | 157 | 7 | 8 | 301 | 89 | 406 | 1.41e-64 | 208 |
| Msa0542260 | MtrunA17_Chr6g0483721 | 36.571 | 350 | 158 | 8 | 3 | 307 | 67 | 397 | 1.43e-64 | 208 |
| Msa0542260 | MtrunA17_Chr6g0477851 | 43.820 | 267 | 104 | 6 | 78 | 301 | 14 | 277 | 5.27e-58 | 187 |
| Msa0542260 | MtrunA17_Chr2g0294991 | 36.556 | 331 | 168 | 8 | 3 | 301 | 124 | 444 | 6.62e-56 | 187 |
| Msa0542260 | MtrunA17_Chr1g0195091 | 39.716 | 141 | 76 | 4 | 163 | 302 | 1 | 133 | 1.27e-28 | 107 |
| Msa0542260 | MtrunA17_Chr6g0467441 | 47.445 | 137 | 54 | 5 | 180 | 298 | 1 | 137 | 7.01e-27 | 105 |
| Msa0542260 | MtrunA17_Chr6g0481871 | 28.253 | 269 | 114 | 11 | 40 | 265 | 812 | 1044 | 1.53e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0542260 | AT4G03420.1 | 69.868 | 302 | 88 | 2 | 8 | 306 | 7 | 308 | 2.85e-144 | 409 |
| Msa0542260 | AT1G03610.1 | 65.894 | 302 | 90 | 4 | 7 | 304 | 10 | 302 | 5.72e-138 | 392 |
| Msa0542260 | AT4G28150.1 | 58.224 | 304 | 86 | 6 | 1 | 295 | 1 | 272 | 6.55e-113 | 328 |
| Msa0542260 | AT4G28150.2 | 58.224 | 304 | 84 | 7 | 1 | 295 | 1 | 270 | 6.70e-111 | 323 |
| Msa0542260 | AT1G03610.2 | 68.421 | 228 | 60 | 3 | 7 | 230 | 10 | 229 | 7.38e-106 | 309 |
| Msa0542260 | AT1G73210.2 | 50.158 | 317 | 126 | 7 | 3 | 302 | 7 | 308 | 9.57e-94 | 280 |
| Msa0542260 | AT1G73210.3 | 49.842 | 317 | 129 | 7 | 3 | 302 | 7 | 310 | 1.80e-93 | 280 |
| Msa0542260 | AT1G73210.1 | 49.842 | 317 | 129 | 7 | 3 | 302 | 7 | 310 | 1.80e-93 | 280 |
| Msa0542260 | AT1G17830.1 | 50.311 | 322 | 134 | 9 | 3 | 301 | 13 | 331 | 1.79e-92 | 278 |
| Msa0542260 | AT4G28150.3 | 57.282 | 206 | 64 | 4 | 1 | 197 | 1 | 191 | 4.33e-70 | 216 |
| Msa0542260 | AT2G01260.1 | 40.317 | 315 | 159 | 7 | 6 | 301 | 62 | 366 | 9.86e-63 | 203 |
| Msa0542260 | AT1G15030.1 | 38.629 | 321 | 170 | 7 | 3 | 301 | 42 | 357 | 1.92e-61 | 199 |
| Msa0542260 | AT5G49220.1 | 37.821 | 312 | 171 | 6 | 2 | 301 | 101 | 401 | 8.58e-61 | 199 |
| Msa0542260 | AT4G16100.1 | 38.762 | 307 | 167 | 7 | 9 | 302 | 88 | 386 | 1.99e-58 | 192 |
| Msa0542260 | AT2G01260.2 | 41.250 | 240 | 115 | 5 | 6 | 226 | 62 | 294 | 6.83e-48 | 163 |
| Msa0542260 | AT1G15030.2 | 40.486 | 247 | 121 | 6 | 3 | 227 | 42 | 284 | 8.44e-48 | 162 |
| Msa0542260 | AT5G23380.1 | 36.129 | 310 | 161 | 8 | 7 | 302 | 6 | 292 | 3.74e-41 | 145 |
| Msa0542260 | AT5G23380.3 | 36.522 | 230 | 119 | 5 | 7 | 226 | 6 | 218 | 1.07e-28 | 110 |
| Msa0542260 | AT5G23380.2 | 36.522 | 230 | 119 | 5 | 7 | 226 | 6 | 218 | 1.07e-28 | 110 |
| Msa0542260 | AT2G01260.3 | 36.066 | 183 | 91 | 6 | 6 | 169 | 62 | 237 | 4.85e-22 | 93.2 |
| Msa0542260 | AT5G08360.1 | 34.395 | 157 | 86 | 4 | 148 | 303 | 26 | 166 | 1.35e-18 | 82.4 |
| Msa0542260 | AT5G08360.2 | 32.593 | 135 | 75 | 3 | 169 | 303 | 3 | 121 | 4.13e-14 | 68.9 |
Find 104 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGAAACCTTAACCGTTTA+TGG | 0.049207 | 4_1:-26782217 | Msa0542260:CDS |
| GTCCCTCCCTTTCAGATTAA+TGG | 0.178578 | 4_1:-26780053 | Msa0542260:intron |
| TTCAATAGTTACCCTTTCTA+AGG | 0.259338 | 4_1:+26778289 | None:intergenic |
| ATTTCACTCTGAGTGATCTT+TGG | 0.265625 | 4_1:-26782166 | Msa0542260:CDS |
| TACTAAGTAGTAATATTCTT+TGG | 0.273648 | 4_1:+26778173 | None:intergenic |
| TTCAGAGAAGAGATTGATTC+TGG | 0.274830 | 4_1:-26781926 | Msa0542260:intron |
| AACATAGAAAATGCAATTAA+TGG | 0.278698 | 4_1:+26778401 | None:intergenic |
| GGGCATTCGGCATGGCTAAA+AGG | 0.299665 | 4_1:-26778517 | Msa0542260:exon |
| CGGGAAATAAACAAAATAAA+AGG | 0.302913 | 4_1:+26783007 | None:intergenic |
| TATTTACAAGCAATAATTTC+AGG | 0.321189 | 4_1:-26782037 | Msa0542260:intron |
| AAATTTACCTTATCAATTAG+AGG | 0.328507 | 4_1:+26781725 | None:intergenic |
| TTTGGAATTGTTTCGATGAA+TGG | 0.331760 | 4_1:-26782148 | Msa0542260:CDS |
| AAGGTTGATAGAAGCTGAAT+TGG | 0.334641 | 4_1:-26782466 | Msa0542260:five_prime_UTR |
| CCCATGGGAATATGATATAT+CGG | 0.340823 | 4_1:+26779740 | None:intergenic |
| TCCCTCCCTTTCAGATTAAT+GGG | 0.345433 | 4_1:-26780052 | Msa0542260:intron |
| AAGTTGAGAAATGTCTATAT+AGG | 0.346692 | 4_1:+26783076 | None:intergenic |
| ACACTTTCATCTTCATTTCA+AGG | 0.353986 | 4_1:-26779674 | Msa0542260:intron |
| TCATGACTTTAATTACTTCA+TGG | 0.353997 | 4_1:-26778538 | Msa0542260:CDS |
| GAGTGAAACTGAAAAGAAAA+TGG | 0.379593 | 4_1:+26782977 | None:intergenic |
| TTTGTTGTTGAGCACTTGTT+TGG | 0.390396 | 4_1:-26778425 | Msa0542260:three_prime_UTR |
| GGCATCTCATTGCAACCATT+TGG | 0.391055 | 4_1:-26778684 | Msa0542260:CDS |
| AGTTGAGAAATGTCTATATA+GGG | 0.393563 | 4_1:+26783077 | None:intergenic |
| CAAGGGAATTTGTGGGGCTC+TGG | 0.401556 | 4_1:-26778642 | Msa0542260:CDS |
| GAAAAGAAAATGGTCTTTCC+CGG | 0.407009 | 4_1:+26782987 | None:intergenic |
| ACTAAGTAGTAATATTCTTT+GGG | 0.411838 | 4_1:+26778174 | None:intergenic |
| GCAACTGCCATCCAACTTGC+TGG | 0.415630 | 4_1:+26779978 | None:intergenic |
| TGTGTGTAGAGAGGTAGATT+AGG | 0.416327 | 4_1:-26778228 | Msa0542260:three_prime_UTR |
| ACCATCTAAGTTTCTACAAA+AGG | 0.419530 | 4_1:-26782346 | Msa0542260:intron |
| TTCATGGTTGAAGCAACTTA+AGG | 0.420063 | 4_1:-26778568 | Msa0542260:CDS |
| TATCACACGGATTCCATAAA+CGG | 0.423998 | 4_1:+26782204 | None:intergenic |
| TTAATTACTTCATGGGCATT+CGG | 0.424039 | 4_1:-26778530 | Msa0542260:CDS |
| CATGACTTTAATTACTTCAT+GGG | 0.433693 | 4_1:-26778537 | Msa0542260:CDS |
| ACGGATTCCATAAACGGTTA+AGG | 0.435111 | 4_1:+26782210 | None:intergenic |
| CAATGAGGTCAATGCAATCT+AGG | 0.444961 | 4_1:-26782410 | Msa0542260:CDS |
| TTGTTTCATGCGTTTAAGAA+AGG | 0.457439 | 4_1:+26782828 | None:intergenic |
| ATTAGAGGAACTCTTCCATA+TGG | 0.461032 | 4_1:+26781740 | None:intergenic |
| ATCTTTAATTGTTCTTCCCA+TGG | 0.468483 | 4_1:+26779724 | None:intergenic |
| CTGGCATTTGAATGACCGAT+TGG | 0.470292 | 4_1:-26781798 | Msa0542260:CDS |
| ACAAGATGCAAGGGAATTTG+TGG | 0.474690 | 4_1:-26778650 | Msa0542260:CDS |
| AAGAGTTCCTCTAATTGATA+AGG | 0.483084 | 4_1:-26781732 | Msa0542260:intron |
| CCATGGGAATATGATATATC+GGG | 0.486988 | 4_1:+26779741 | None:intergenic |
| GTGTAGAGAGGTAGATTAGG+AGG | 0.491169 | 4_1:-26778225 | Msa0542260:three_prime_UTR |
| TATGTAGTGTGGCAGATTCA+TGG | 0.496401 | 4_1:-26778584 | Msa0542260:CDS |
| GAGGTTCTTTGTGTGTAGAG+AGG | 0.496735 | 4_1:-26778237 | Msa0542260:three_prime_UTR |
| GGGTTAGCAGAAAGATCCCC+AGG | 0.501865 | 4_1:-26780032 | Msa0542260:CDS |
| ATTTGAATTGCAGAGAGGTA+AGG | 0.504614 | 4_1:+26782059 | None:intergenic |
| AGAAACTTAGATGGTACAAC+AGG | 0.506246 | 4_1:+26782354 | None:intergenic |
| CAAGTTGGATGGCAGTTGCT+TGG | 0.508186 | 4_1:-26779974 | Msa0542260:intron |
| TGGAAGAGACTCAAGAGAAA+AGG | 0.512210 | 4_1:-26778719 | Msa0542260:CDS |
| TCTTTAATTGTTCTTCCCAT+GGG | 0.512415 | 4_1:+26779725 | None:intergenic |
| TGTATAGCCTCTTTGTGAAG+AGG | 0.516424 | 4_1:-26778256 | Msa0542260:three_prime_UTR |
| ACTTGTTAGACTCCTTAGAA+AGG | 0.516744 | 4_1:-26778301 | Msa0542260:three_prime_UTR |
| CAAGATGCAAGGGAATTTGT+GGG | 0.517532 | 4_1:-26778649 | Msa0542260:CDS |
| CATCTGAGCAAGATAGTCTC+TGG | 0.520611 | 4_1:-26781817 | Msa0542260:CDS |
| CTTGTTAGACTCCTTAGAAA+GGG | 0.522238 | 4_1:-26778300 | Msa0542260:three_prime_UTR |
| TTGATCTTTCACCAGCAAGT+TGG | 0.526084 | 4_1:-26779989 | Msa0542260:CDS |
| TGGCATTTGAATGACCGATT+GGG | 0.527348 | 4_1:-26781797 | Msa0542260:CDS |
| TCTCTTCCATCTCATTATCA+AGG | 0.529957 | 4_1:+26778733 | None:intergenic |
| TATGGTGAAGAAAGCAATCA+AGG | 0.530917 | 4_1:+26782382 | None:intergenic |
| TTGTACGTGGCTAAACCAAA+TGG | 0.531561 | 4_1:+26778669 | None:intergenic |
| AGGTCAATATATAAAGTACT+AGG | 0.534234 | 4_1:+26778472 | None:intergenic |
| AGAGGTAAGGAACATAGTAT+TGG | 0.534665 | 4_1:+26782072 | None:intergenic |
| TGGTAGGGACCAAGAAAAGC+TGG | 0.539606 | 4_1:-26778613 | Msa0542260:CDS |
| CCCGATATATCATATTCCCA+TGG | 0.539980 | 4_1:-26779741 | Msa0542260:CDS |
| GGAAATAAAGATGACCCAAT+CGG | 0.546064 | 4_1:+26781783 | None:intergenic |
| TTCGATGAATGGAGTGCCTA+TGG | 0.551127 | 4_1:-26782137 | Msa0542260:CDS |
| ATAGCGAGTGTGATAAGCTA+TGG | 0.557766 | 4_1:-26781859 | Msa0542260:CDS |
| ATGGTACAACAGGTGTTGTA+TGG | 0.559797 | 4_1:+26782364 | None:intergenic |
| TTGACCTCATTGTATATCAA+AGG | 0.560370 | 4_1:+26782421 | None:intergenic |
| TCTTCCTTTGATATACAATG+AGG | 0.561900 | 4_1:-26782425 | Msa0542260:exon |
| TACTTCATGGGCATTCGGCA+TGG | 0.562500 | 4_1:-26778525 | Msa0542260:CDS |
| TGAAGTAATTAAAGTCATGA+TGG | 0.564712 | 4_1:+26778541 | None:intergenic |
| CAAAGAACCTCTTCACAAAG+AGG | 0.575757 | 4_1:+26778249 | None:intergenic |
| AAAAGAAAATGGTCTTTCCC+GGG | 0.579152 | 4_1:+26782988 | None:intergenic |
| GATTGGAACTCCAACGCCAT+AGG | 0.589508 | 4_1:+26782121 | None:intergenic |
| GAATGGAGTGCCTATGGCGT+TGG | 0.591581 | 4_1:-26782131 | Msa0542260:CDS |
| ACTCAAGAGAAAAGGAAGGA+AGG | 0.593264 | 4_1:-26778711 | Msa0542260:CDS |
| GGGGCTCTGGAAAATGTGGT+AGG | 0.593911 | 4_1:-26778629 | Msa0542260:CDS |
| CTATGGACATCATCAGAAGA+GGG | 0.597455 | 4_1:-26781842 | Msa0542260:CDS |
| TATGGACCTTGATAATGAGA+TGG | 0.597757 | 4_1:-26778739 | Msa0542260:CDS |
| TGTGTGTGTGACGGTGATTG+AGG | 0.598944 | 4_1:+26783036 | None:intergenic |
| CCGATATATCATATTCCCAT+GGG | 0.601439 | 4_1:-26779740 | Msa0542260:CDS |
| GGGCTCTGGAAAATGTGGTA+GGG | 0.603737 | 4_1:-26778628 | Msa0542260:CDS |
| TTAGCCACGTACAAGATGCA+AGG | 0.611061 | 4_1:-26778660 | Msa0542260:CDS |
| AGTAATTAAAGTCATGATGG+TGG | 0.611478 | 4_1:+26778544 | None:intergenic |
| ATGAAAGTGTGTGGTAAGTG+AGG | 0.614288 | 4_1:+26779687 | None:intergenic |
| TCTTTCACCAGCAAGTTGGA+TGG | 0.614478 | 4_1:-26779985 | Msa0542260:CDS |
| GCTATGGACATCATCAGAAG+AGG | 0.617480 | 4_1:-26781843 | Msa0542260:CDS |
| TCAACTGTTTCTCTATCACA+CGG | 0.620809 | 4_1:+26782191 | None:intergenic |
| ATTCCCTTGCATCTTGTACG+TGG | 0.626371 | 4_1:+26778656 | None:intergenic |
| AGAGACTCAAGAGAAAAGGA+AGG | 0.627266 | 4_1:-26778715 | Msa0542260:CDS |
| GAGAAAAGGAAGGAAGGTGA+AGG | 0.630280 | 4_1:-26778705 | Msa0542260:CDS |
| AGGATTAAGTGTGTGTGTGA+CGG | 0.632588 | 4_1:+26783027 | None:intergenic |
| TTCTGGTGATAGTGAGACAA+GGG | 0.640927 | 4_1:-26781909 | Msa0542260:CDS |
| GTGTGACGGTGATTGAGGAA+AGG | 0.642377 | 4_1:+26783041 | None:intergenic |
| TAGCCACGTACAAGATGCAA+GGG | 0.647629 | 4_1:-26778659 | Msa0542260:CDS |
| TAAATATTTGAATTGCAGAG+AGG | 0.649675 | 4_1:+26782054 | None:intergenic |
| TTGTGGGGCTCTGGAAAATG+TGG | 0.652498 | 4_1:-26778633 | Msa0542260:CDS |
| GCTGGTTTCACTATGTAGTG+TGG | 0.665797 | 4_1:-26778595 | Msa0542260:CDS |
| ATTCTGGTGATAGTGAGACA+AGG | 0.671618 | 4_1:-26781910 | Msa0542260:CDS |
| AAGATGCAAGGGAATTTGTG+GGG | 0.694545 | 4_1:-26778648 | Msa0542260:CDS |
| GGTTAGCAGAAAGATCCCCA+GGG | 0.722239 | 4_1:-26780031 | Msa0542260:CDS |
| GAAATGAAGATGAAAGTGTG+TGG | 0.729995 | 4_1:+26779678 | None:intergenic |
| TTTAAGTGACATCAACCCTG+GGG | 0.735285 | 4_1:+26780016 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTATCTTTTTTTTC+TGG | - | chr4_1:26779866-26779885 | Msa0542260:intron | 10.0% |
| !!! | TTATTTTATCTTTTTTTTCT+GGG | - | chr4_1:26779867-26779886 | Msa0542260:intron | 10.0% |
| !!! | CATTAAAAGTTTTTTTTTTT+AGG | + | chr4_1:26781786-26781805 | None:intergenic | 10.0% |
| !!! | ATTTTCATTTCTTTTATTAA+GGG | + | chr4_1:26781980-26781999 | None:intergenic | 10.0% |
| !!! | AATTTTCATTTCTTTTATTA+AGG | + | chr4_1:26781981-26782000 | None:intergenic | 10.0% |
| !!! | CAAAATTTTCATTTTTTAAT+AGG | - | chr4_1:26782196-26782215 | Msa0542260:CDS | 10.0% |
| !!! | AAATTTTCATTTTTTAATAG+GGG | - | chr4_1:26782198-26782217 | Msa0542260:CDS | 10.0% |
| !!! | TCTATGTTTTTTATTTTTAT+TGG | - | chr4_1:26782860-26782879 | Msa0542260:five_prime_UTR | 10.0% |
| !!! | TTTTTGTATTTTGAAGAAAA+AGG | + | chr4_1:26778327-26778346 | None:intergenic | 15.0% |
| !! | GAGAAATAATTATAGTTATA+GGG | + | chr4_1:26778714-26778733 | None:intergenic | 15.0% |
| !! | AGAGAAATAATTATAGTTAT+AGG | + | chr4_1:26778715-26778734 | None:intergenic | 15.0% |
| !! | AGAAACATGTAATTAAAAAA+TGG | + | chr4_1:26779611-26779630 | None:intergenic | 15.0% |
| !!! | AAATTTTTAATCTATGGATT+AGG | - | chr4_1:26779669-26779688 | Msa0542260:intron | 15.0% |
| !! | GTTAACATTATAATATTTCA+AGG | - | chr4_1:26779976-26779995 | Msa0542260:CDS | 15.0% |
| !!! | TATTATATTCCCTATTTTTA+AGG | + | chr4_1:26780004-26780023 | None:intergenic | 15.0% |
| !! | TTAAAAATAGGGAATATAAT+AGG | - | chr4_1:26780003-26780022 | Msa0542260:CDS | 15.0% |
| !! | CATAATAAAATAAAATAGGT+GGG | + | chr4_1:26780456-26780475 | None:intergenic | 15.0% |
| !! | AGTCCATAATAAAATAAAAT+AGG | + | chr4_1:26780460-26780479 | None:intergenic | 15.0% |
| !! | TTGAAAAAATCAATCTAATT+TGG | + | chr4_1:26780557-26780576 | None:intergenic | 15.0% |
| !!! | TTTTTTATTTTTCAAACACT+CGG | + | chr4_1:26780693-26780712 | None:intergenic | 15.0% |
| !! | ATTTAAATTTATAAGGTAAG+AGG | - | chr4_1:26780767-26780786 | Msa0542260:intron | 15.0% |
| !!! | AGTGAATTTCATTTTAATAA+AGG | - | chr4_1:26780796-26780815 | Msa0542260:intron | 15.0% |
| !! | AAAAGTTAATCACTTAAAAT+TGG | - | chr4_1:26780837-26780856 | Msa0542260:intron | 15.0% |
| !!! | ATTTTTACTAATAGAATCAA+CGG | + | chr4_1:26781132-26781151 | None:intergenic | 15.0% |
| !!! | CATTTTTCTTTAATTAGTAA+AGG | - | chr4_1:26781353-26781372 | Msa0542260:intron | 15.0% |
| !!! | TTAATTAGTAAAGGTATAAA+TGG | - | chr4_1:26781362-26781381 | Msa0542260:intron | 15.0% |
| !! | AATAATTATTACGAGATAAA+AGG | + | chr4_1:26781719-26781738 | None:intergenic | 15.0% |
| !!! | TCCTTTTATTCATTATTTTT+TGG | - | chr4_1:26781905-26781924 | Msa0542260:CDS | 15.0% |
| !!! | TTTTCATTTCTTTTATTAAG+GGG | + | chr4_1:26781979-26781998 | None:intergenic | 15.0% |
| !!! | ATTGCAACATTTTAAAATTT+AGG | - | chr4_1:26782226-26782245 | Msa0542260:CDS | 15.0% |
| !! | CACAAATTATGAAAAAAATA+AGG | + | chr4_1:26782272-26782291 | None:intergenic | 15.0% |
| !!! | CTTTTATTTTGTTTATTTCC+CGG | - | chr4_1:26778240-26778259 | Msa0542260:three_prime_UTR | 20.0% |
| !!! | TTTTATTTTGTTTATTTCCC+GGG | - | chr4_1:26778241-26778260 | Msa0542260:three_prime_UTR | 20.0% |
| !! | CCAAATATGAGAAAAATAAA+GGG | + | chr4_1:26778745-26778764 | None:intergenic | 20.0% |
| !!! | CCTTTATTTTTCTCATATTT+GGG | - | chr4_1:26778743-26778762 | Msa0542260:CDS | 20.0% |
| !!! | TTTCTTCCTTTTTTGTTTTT+TGG | - | chr4_1:26778944-26778963 | Msa0542260:intron | 20.0% |
| !! | AGTAAACCAAAAAACAAAAA+AGG | + | chr4_1:26778953-26778972 | None:intergenic | 20.0% |
| !! | TATTTACAAGCAATAATTTC+AGG | - | chr4_1:26779209-26779228 | Msa0542260:intron | 20.0% |
| !! | AAATTTACCTTATCAATTAG+AGG | + | chr4_1:26779524-26779543 | None:intergenic | 20.0% |
| !!! | AGTAGGAAATTTTTAATCTA+TGG | - | chr4_1:26779663-26779682 | Msa0542260:intron | 20.0% |
| !!! | AAGATAGGAATTTTATTCTA+AGG | - | chr4_1:26779932-26779951 | Msa0542260:intron | 20.0% |
| !! | GTATTTAGAAAAAAGATGTT+TGG | - | chr4_1:26779954-26779973 | Msa0542260:intron | 20.0% |
| !! | AAAGAACTTGAGATTTAAAT+CGG | - | chr4_1:26780211-26780230 | Msa0542260:intron | 20.0% |
| !! | CAATGAAAATTACAAAGATA+AGG | + | chr4_1:26780374-26780393 | None:intergenic | 20.0% |
| !!! | TCTTTGTAATTTTCATTGAT+TGG | - | chr4_1:26780376-26780395 | Msa0542260:intron | 20.0% |
| !! | CTAGACAATAATTTAAGTAA+AGG | + | chr4_1:26780431-26780450 | None:intergenic | 20.0% |
| !! | CTTTACTTAAATTATTGTCT+AGG | - | chr4_1:26780429-26780448 | Msa0542260:intron | 20.0% |
| !! | CCATAATAAAATAAAATAGG+TGG | + | chr4_1:26780457-26780476 | None:intergenic | 20.0% |
| !!! | CCACCTATTTTATTTTATTA+TGG | - | chr4_1:26780454-26780473 | Msa0542260:intron | 20.0% |
| !!! | GGATATATTTTCAATCAAAT+CGG | - | chr4_1:26780603-26780622 | Msa0542260:intron | 20.0% |
| !!! | GATATATTTTCAATCAAATC+GGG | - | chr4_1:26780604-26780623 | Msa0542260:intron | 20.0% |
| !! | GTGTTTGAAAAATAAAAAAG+AGG | - | chr4_1:26780694-26780713 | Msa0542260:intron | 20.0% |
| !!! | AAGATTTTAAGCACTAATTT+AGG | - | chr4_1:26781078-26781097 | Msa0542260:intron | 20.0% |
| !! | AATTAGTATAAGTTATACCA+AGG | + | chr4_1:26781313-26781332 | None:intergenic | 20.0% |
| !! | TAAATGGTTAAATTAGCATT+TGG | - | chr4_1:26781378-26781397 | Msa0542260:intron | 20.0% |
| !!! | ATGTACTAAATTTTCATGTT+TGG | - | chr4_1:26781414-26781433 | Msa0542260:intron | 20.0% |
| !! | ATCCCTTATAGTATTAAAAT+TGG | - | chr4_1:26781667-26781686 | Msa0542260:intron | 20.0% |
| !!! | GTCCAATTTTAATACTATAA+GGG | + | chr4_1:26781672-26781691 | None:intergenic | 20.0% |
| !! | TATGATAGTAAATAGATCAA+TGG | - | chr4_1:26781845-26781864 | Msa0542260:CDS | 20.0% |
| !! | GCCAAAAAATAATGAATAAA+AGG | + | chr4_1:26781909-26781928 | None:intergenic | 20.0% |
| !!! | CATTGTTTTGTAAAATTAAG+GGG | + | chr4_1:26782007-26782026 | None:intergenic | 20.0% |
| !!! | GCATTGTTTTGTAAAATTAA+GGG | + | chr4_1:26782008-26782027 | None:intergenic | 20.0% |
| !!! | TGCATTGTTTTGTAAAATTA+AGG | + | chr4_1:26782009-26782028 | None:intergenic | 20.0% |
| !!! | TTTACAAAAAGTTGCAATTT+TGG | + | chr4_1:26782071-26782090 | None:intergenic | 20.0% |
| !!! | CAACTTTTTGTAAAGATAAA+AGG | - | chr4_1:26782077-26782096 | Msa0542260:CDS | 20.0% |
| !! | AACATAGAAAATGCAATTAA+TGG | + | chr4_1:26782848-26782867 | None:intergenic | 20.0% |
| !! | ACTAAGTAGTAATATTCTTT+GGG | + | chr4_1:26783075-26783094 | None:intergenic | 20.0% |
| !! | TACTAAGTAGTAATATTCTT+TGG | + | chr4_1:26783076-26783095 | None:intergenic | 20.0% |
| ! | AGTTGAGAAATGTCTATATA+GGG | + | chr4_1:26778172-26778191 | None:intergenic | 25.0% |
| ! | AAGTTGAGAAATGTCTATAT+AGG | + | chr4_1:26778173-26778192 | None:intergenic | 25.0% |
| ! | CGGGAAATAAACAAAATAAA+AGG | + | chr4_1:26778242-26778261 | None:intergenic | 25.0% |
| !!! | AAAGGTGTTTTTGTTTTATG+AGG | + | chr4_1:26778309-26778328 | None:intergenic | 25.0% |
| !!! | TGTTTGTTTTACAAGGTTTA+AGG | - | chr4_1:26778372-26778391 | Msa0542260:three_prime_UTR | 25.0% |
| !!! | ATTGCTATTTGTTACAGAAA+AGG | - | chr4_1:26778512-26778531 | Msa0542260:exon | 25.0% |
| ! | ATGTCTTCCTTCAAAAAAAA+AGG | - | chr4_1:26778579-26778598 | Msa0542260:CDS | 25.0% |
| !!! | ATCTATGCCTTTTTTTTTGA+AGG | + | chr4_1:26778589-26778608 | None:intergenic | 25.0% |
| !!! | TATTTTTCGGTGGAAAAAAT+GGG | - | chr4_1:26778613-26778632 | Msa0542260:CDS | 25.0% |
| !!! | TTATGACTCTTTTTTAGTAG+AGG | - | chr4_1:26778663-26778682 | Msa0542260:CDS | 25.0% |
| !!! | CCCTTTATTTTTCTCATATT+TGG | - | chr4_1:26778742-26778761 | Msa0542260:CDS | 25.0% |
| ! | CCCAAATATGAGAAAAATAA+AGG | + | chr4_1:26778746-26778765 | None:intergenic | 25.0% |
| ! | AACAAAAAAGGAAGAAAGAA+TGG | + | chr4_1:26778941-26778960 | None:intergenic | 25.0% |
| !! | TCCAATCAACTTTAAAAATG+AGG | - | chr4_1:26779141-26779160 | Msa0542260:intron | 25.0% |
| !!! | TCCTCATTTTTAAAGTTGAT+TGG | + | chr4_1:26779145-26779164 | None:intergenic | 25.0% |
| ! | TAAATATTTGAATTGCAGAG+AGG | + | chr4_1:26779195-26779214 | None:intergenic | 25.0% |
| !!! | GAGTTGATTTTTCAAAATAC+TGG | + | chr4_1:26779487-26779506 | None:intergenic | 25.0% |
| ! | TTTGAAAAATCAACTCCATA+TGG | - | chr4_1:26779491-26779510 | Msa0542260:intron | 25.0% |
| ! | GTACAAAGTGACAATTTATT+AGG | + | chr4_1:26779782-26779801 | None:intergenic | 25.0% |
| ! | AGTGTATCAAATTTATTCCT+AGG | - | chr4_1:26779903-26779922 | Msa0542260:intron | 25.0% |
| ! | ATTCCTAGGAATATAAAGAT+AGG | - | chr4_1:26779917-26779936 | Msa0542260:intron | 25.0% |
| ! | ATTCCTATCTTTATATTCCT+AGG | + | chr4_1:26779923-26779942 | None:intergenic | 25.0% |
| ! | TTTCAAGGAACCTTAAAAAT+AGG | - | chr4_1:26779991-26780010 | Msa0542260:CDS | 25.0% |
| ! | TTCAAGGAACCTTAAAAATA+GGG | - | chr4_1:26779992-26780011 | Msa0542260:CDS | 25.0% |
| !! | AAAAGTTTTCCCAAAGAAAA+TGG | + | chr4_1:26780056-26780075 | None:intergenic | 25.0% |
| ! | GTTCTTTACTTGTTTACTTA+GGG | + | chr4_1:26780198-26780217 | None:intergenic | 25.0% |
| ! | AGTTCTTTACTTGTTTACTT+AGG | + | chr4_1:26780199-26780218 | None:intergenic | 25.0% |
| ! | ACAAAAACATCACTATTTGT+TGG | - | chr4_1:26780504-26780523 | Msa0542260:intron | 25.0% |
| ! | CAAAAACATCACTATTTGTT+GGG | - | chr4_1:26780505-26780524 | Msa0542260:intron | 25.0% |
| !!! | CATTGTTTTTTTCACAGTTT+TGG | + | chr4_1:26780664-26780683 | None:intergenic | 25.0% |
| ! | GGTAATTAATTTCTATTCCT+TGG | - | chr4_1:26781293-26781312 | Msa0542260:intron | 25.0% |
| !!! | TACTCATGGTTGATATTTTT+AGG | - | chr4_1:26781480-26781499 | Msa0542260:intron | 25.0% |
| !!! | GGTCCAATTTTAATACTATA+AGG | + | chr4_1:26781673-26781692 | None:intergenic | 25.0% |
| ! | CAGGAAAAAAAATTTAAGAG+TGG | + | chr4_1:26781821-26781840 | None:intergenic | 25.0% |
| ! | CTATTTACTATCATAAACAC+AGG | + | chr4_1:26781840-26781859 | None:intergenic | 25.0% |
| ! | CTTATTTCCCTAAAGATAAA+GGG | - | chr4_1:26782109-26782128 | Msa0542260:CDS | 25.0% |
| !! | CTTTTAACCCTTTATCTTTA+GGG | + | chr4_1:26782119-26782138 | None:intergenic | 25.0% |
| !! | ACTTTTAACCCTTTATCTTT+AGG | + | chr4_1:26782120-26782139 | None:intergenic | 25.0% |
| !! | AATTTTGTCCTCTATCTTTA+AGG | + | chr4_1:26782183-26782202 | None:intergenic | 25.0% |
| !!! | GCAACATTTTAAAATTTAGG+AGG | - | chr4_1:26782229-26782248 | Msa0542260:intron | 25.0% |
| ! | AATAAGTGCAAAAAGCTAAT+AGG | + | chr4_1:26782437-26782456 | None:intergenic | 25.0% |
| !!! | TATTAGCTTTTTGCACTTAT+TGG | - | chr4_1:26782436-26782455 | Msa0542260:five_prime_UTR | 25.0% |
| ! | TGAAGTAATTAAAGTCATGA+TGG | + | chr4_1:26782708-26782727 | None:intergenic | 25.0% |
| ! | TCATGACTTTAATTACTTCA+TGG | - | chr4_1:26782708-26782727 | Msa0542260:intron | 25.0% |
| ! | CATGACTTTAATTACTTCAT+GGG | - | chr4_1:26782709-26782728 | Msa0542260:intron | 25.0% |
| !! | AGGTCAATATATAAAGTACT+AGG | + | chr4_1:26782777-26782796 | None:intergenic | 25.0% |
| ! | TATCCTAAAAAAGAAGAGTT+AGG | + | chr4_1:26782800-26782819 | None:intergenic | 25.0% |
| !! | TTTTATTGGAGTATGTATGT+AGG | - | chr4_1:26782874-26782893 | Msa0542260:five_prime_UTR | 25.0% |
| GAGTGAAACTGAAAAGAAAA+TGG | + | chr4_1:26778272-26778291 | None:intergenic | 30.0% | |
| !!! | TGCACTTTGTTTGTTTTACA+AGG | - | chr4_1:26778365-26778384 | Msa0542260:three_prime_UTR | 30.0% |
| TTGTTTCATGCGTTTAAGAA+AGG | + | chr4_1:26778421-26778440 | None:intergenic | 30.0% | |
| TAAACGCATGAAACAAAAAC+AGG | - | chr4_1:26778425-26778444 | Msa0542260:three_prime_UTR | 30.0% | |
| ! | TTTGGATTGAGTTTTCTTCA+AGG | - | chr4_1:26778448-26778467 | Msa0542260:three_prime_UTR | 30.0% |
| ! | GGCATAGATTGAGTATTTTT+CGG | - | chr4_1:26778600-26778619 | Msa0542260:CDS | 30.0% |
| !! | ATAGATTGAGTATTTTTCGG+TGG | - | chr4_1:26778603-26778622 | Msa0542260:CDS | 30.0% |
| !! | GTATTTTTCGGTGGAAAAAA+TGG | - | chr4_1:26778612-26778631 | Msa0542260:CDS | 30.0% |
| CAAAGGAAGAAAAAAGAACA+AGG | + | chr4_1:26778811-26778830 | None:intergenic | 30.0% | |
| TCTTCCTTTGATATACAATG+AGG | - | chr4_1:26778821-26778840 | Msa0542260:intron | 30.0% | |
| TTGACCTCATTGTATATCAA+AGG | + | chr4_1:26778828-26778847 | None:intergenic | 30.0% | |
| ACCATCTAAGTTTCTACAAA+AGG | - | chr4_1:26778900-26778919 | Msa0542260:intron | 30.0% | |
| ! | ACCTTTTGTAGAAACTTAGA+TGG | + | chr4_1:26778904-26778923 | None:intergenic | 30.0% |
| TTAGAAACCTTAACCGTTTA+TGG | - | chr4_1:26779029-26779048 | Msa0542260:intron | 30.0% | |
| ! | TTTGGAATTGTTTCGATGAA+TGG | - | chr4_1:26779098-26779117 | Msa0542260:intron | 30.0% |
| AAGAGTTCCTCTAATTGATA+AGG | - | chr4_1:26779514-26779533 | Msa0542260:intron | 30.0% | |
| AGAGATAAGAACATAAGACT+AGG | + | chr4_1:26779804-26779823 | None:intergenic | 30.0% | |
| GTTCTTATCTCTTTCTTAAG+TGG | - | chr4_1:26779812-26779831 | Msa0542260:intron | 30.0% | |
| ! | ATTTTTCCCACCATTTTCTT+TGG | - | chr4_1:26780043-26780062 | Msa0542260:intron | 30.0% |
| ! | TTTTTCCCACCATTTTCTTT+GGG | - | chr4_1:26780044-26780063 | Msa0542260:intron | 30.0% |
| ! | AAACCAAACAGCAAAAGTTT+TGG | + | chr4_1:26780346-26780365 | None:intergenic | 30.0% |
| !!! | AAAACTTTTGCTGTTTGGTT+TGG | - | chr4_1:26780345-26780364 | Msa0542260:intron | 30.0% |
| AAATATATCCACGAAACTGA+TGG | + | chr4_1:26780593-26780612 | None:intergenic | 30.0% | |
| ACTGTGAAAAAAACAATGTG+AGG | - | chr4_1:26780666-26780685 | Msa0542260:intron | 30.0% | |
| CGCTATACTGTGAATTTATT+TGG | + | chr4_1:26780906-26780925 | None:intergenic | 30.0% | |
| CTTTGTAATGCAAGTTTGTA+AGG | - | chr4_1:26780928-26780947 | Msa0542260:intron | 30.0% | |
| GTAGAAATGTTATCTTGTGA+TGG | - | chr4_1:26781005-26781024 | Msa0542260:intron | 30.0% | |
| TTTGTCAACCATAGAATCAA+CGG | + | chr4_1:26781170-26781189 | None:intergenic | 30.0% | |
| TGATTCTATGGTTGACAAAT+TGG | - | chr4_1:26781171-26781190 | Msa0542260:intron | 30.0% | |
| GATCAATTGATCAATACTCA+TGG | - | chr4_1:26781466-26781485 | Msa0542260:intron | 30.0% | |
| TCTTTAATTGTTCTTCCCAT+GGG | + | chr4_1:26781524-26781543 | None:intergenic | 30.0% | |
| ATCTTTAATTGTTCTTCCCA+TGG | + | chr4_1:26781525-26781544 | None:intergenic | 30.0% | |
| ACACTTTCATCTTCATTTCA+AGG | - | chr4_1:26781572-26781591 | Msa0542260:intron | 30.0% | |
| AGGTATTCCTTATACATGTT+TGG | - | chr4_1:26781592-26781611 | Msa0542260:intron | 30.0% | |
| ! | TCCTTATACATGTTTGGAAT+TGG | - | chr4_1:26781598-26781617 | Msa0542260:intron | 30.0% |
| TCCAATTCCAAACATGTATA+AGG | + | chr4_1:26781602-26781621 | None:intergenic | 30.0% | |
| TCAAGCATTCATGTAGTAAT+GGG | - | chr4_1:26781640-26781659 | Msa0542260:intron | 30.0% | |
| TAGCTTAATCAACATATGAC+TGG | + | chr4_1:26781694-26781713 | None:intergenic | 30.0% | |
| !!! | TCGCAACATTTTGAAACTAA+GGG | + | chr4_1:26781950-26781969 | None:intergenic | 30.0% |
| !!! | ATCGCAACATTTTGAAACTA+AGG | + | chr4_1:26781951-26781970 | None:intergenic | 30.0% |
| ! | GTTTCAAAATGTTGCGATTT+TGG | - | chr4_1:26781953-26781972 | Msa0542260:intron | 30.0% |
| GCTTATTTCCCTAAAGATAA+AGG | - | chr4_1:26782108-26782127 | Msa0542260:CDS | 30.0% | |
| !! | CTTTTGACTCTCTAACTTTA+TGG | + | chr4_1:26782151-26782170 | None:intergenic | 30.0% |
| ACATGTTTCCTTAAAGATAG+AGG | - | chr4_1:26782172-26782191 | Msa0542260:CDS | 30.0% | |
| TCAATTCGATTATCATCCAA+AGG | - | chr4_1:26782336-26782355 | Msa0542260:intron | 30.0% | |
| TGGTAGTTGTACATAAATGT+AGG | + | chr4_1:26782412-26782431 | None:intergenic | 30.0% | |
| TATGAAGGATTGTGTAGATA+TGG | - | chr4_1:26782489-26782508 | Msa0542260:intron | 30.0% | |
| AGTAATTAAAGTCATGATGG+TGG | + | chr4_1:26782705-26782724 | None:intergenic | 30.0% | |
| TTAATTACTTCATGGGCATT+CGG | - | chr4_1:26782716-26782735 | Msa0542260:intron | 30.0% | |
| !!! | TGTTTACTTGAGAGCATTTT+TGG | - | chr4_1:26782916-26782935 | Msa0542260:five_prime_UTR | 30.0% |
| TTCAATAGTTACCCTTTCTA+AGG | + | chr4_1:26782960-26782979 | None:intergenic | 30.0% | |
| AAAAGAAAATGGTCTTTCCC+GGG | + | chr4_1:26778261-26778280 | None:intergenic | 35.0% | |
| GAAAAGAAAATGGTCTTTCC+CGG | + | chr4_1:26778262-26778281 | None:intergenic | 35.0% | |
| GCATGAAACAAAAACAGGTT+TGG | - | chr4_1:26778430-26778449 | Msa0542260:three_prime_UTR | 35.0% | |
| ! | TTGGGTTCTCATTTTCTTCA+AGG | - | chr4_1:26778761-26778780 | Msa0542260:intron | 35.0% |
| !! | AAGGTTGATAGAAGCTGAAT+TGG | - | chr4_1:26778780-26778799 | Msa0542260:intron | 35.0% |
| TATGGTGAAGAAAGCAATCA+AGG | + | chr4_1:26778867-26778886 | None:intergenic | 35.0% | |
| AGAAACTTAGATGGTACAAC+AGG | + | chr4_1:26778895-26778914 | None:intergenic | 35.0% | |
| TATCACACGGATTCCATAAA+CGG | + | chr4_1:26779045-26779064 | None:intergenic | 35.0% | |
| ! | TCAACTGTTTCTCTATCACA+CGG | + | chr4_1:26779058-26779077 | None:intergenic | 35.0% |
| ATTTCACTCTGAGTGATCTT+TGG | - | chr4_1:26779080-26779099 | Msa0542260:intron | 35.0% | |
| AGAGGTAAGGAACATAGTAT+TGG | + | chr4_1:26779177-26779196 | None:intergenic | 35.0% | |
| ATTTGAATTGCAGAGAGGTA+AGG | + | chr4_1:26779190-26779209 | None:intergenic | 35.0% | |
| ! | CACAGAAGAAAAAGTGCATT+TGG | + | chr4_1:26779262-26779281 | None:intergenic | 35.0% |
| !!! | GCACTTTTTCTTCTGTGATA+CGG | - | chr4_1:26779265-26779284 | Msa0542260:intron | 35.0% |
| ! | TTCAGAGAAGAGATTGATTC+TGG | - | chr4_1:26779320-26779339 | Msa0542260:intron | 35.0% |
| GGAAATAAAGATGACCCAAT+CGG | + | chr4_1:26779466-26779485 | None:intergenic | 35.0% | |
| ATTAGAGGAACTCTTCCATA+TGG | + | chr4_1:26779509-26779528 | None:intergenic | 35.0% | |
| AAGATGAGAGTCCATAGATT+AGG | - | chr4_1:26779634-26779653 | Msa0542260:intron | 35.0% | |
| ! | GTTTTCCCAAAGAAAATGGT+GGG | + | chr4_1:26780052-26780071 | None:intergenic | 35.0% |
| ! | AGTTTTCCCAAAGAAAATGG+TGG | + | chr4_1:26780053-26780072 | None:intergenic | 35.0% |
| ! | ATTCCCACGAACATTTTACA+CGG | - | chr4_1:26780078-26780097 | Msa0542260:intron | 35.0% |
| !!! | CAAACAGCAAAAGTTTTGGA+AGG | + | chr4_1:26780342-26780361 | None:intergenic | 35.0% |
| !!! | CTTCCAAAACTTTTGCTGTT+TGG | - | chr4_1:26780340-26780359 | Msa0542260:intron | 35.0% |
| AATGCAAGTTTGTAAGGTGT+TGG | - | chr4_1:26780934-26780953 | Msa0542260:intron | 35.0% | |
| ACGTTTGTCTTGTACATTGT+AGG | + | chr4_1:26780987-26781006 | None:intergenic | 35.0% | |
| GCTAACCCATTAATCTGAAA+GGG | + | chr4_1:26781202-26781221 | None:intergenic | 35.0% | |
| TGCTAACCCATTAATCTGAA+AGG | + | chr4_1:26781203-26781222 | None:intergenic | 35.0% | |
| !! | TTTTAAGTGACATCAACCCT+GGG | + | chr4_1:26781234-26781253 | None:intergenic | 35.0% |
| CCATGGGAATATGATATATC+GGG | + | chr4_1:26781508-26781527 | None:intergenic | 35.0% | |
| CCCATGGGAATATGATATAT+CGG | + | chr4_1:26781509-26781528 | None:intergenic | 35.0% | |
| CCGATATATCATATTCCCAT+GGG | - | chr4_1:26781506-26781525 | Msa0542260:intron | 35.0% | |
| ! | GAAATGAAGATGAAAGTGTG+TGG | + | chr4_1:26781571-26781590 | None:intergenic | 35.0% |
| GTCAAGCATTCATGTAGTAA+TGG | - | chr4_1:26781639-26781658 | Msa0542260:intron | 35.0% | |
| !!! | GCAACATTTTGAAACTAAGG+GGG | + | chr4_1:26781948-26781967 | None:intergenic | 35.0% |
| !!! | CGCAACATTTTGAAACTAAG+GGG | + | chr4_1:26781949-26781968 | None:intergenic | 35.0% |
| TCGATCATTGTTATGCAACA+AGG | - | chr4_1:26782298-26782317 | Msa0542260:intron | 35.0% | |
| AATCATGAGAACTAGACCTT+TGG | + | chr4_1:26782355-26782374 | None:intergenic | 35.0% | |
| !! | TATGGACCTTGATAATGAGA+TGG | - | chr4_1:26782507-26782526 | Msa0542260:intron | 35.0% |
| TCTCTTCCATCTCATTATCA+AGG | + | chr4_1:26782516-26782535 | None:intergenic | 35.0% | |
| ! | ATAGTGAAACCAGCTTTTCT+TGG | + | chr4_1:26782645-26782664 | None:intergenic | 35.0% |
| TTCATGGTTGAAGCAACTTA+AGG | - | chr4_1:26782678-26782697 | Msa0542260:intron | 35.0% | |
| CCTAAAAAAGAAGAGTTAGG+AGG | + | chr4_1:26782797-26782816 | None:intergenic | 35.0% | |
| !!! | CCTCCTAACTCTTCTTTTTT+AGG | - | chr4_1:26782794-26782813 | Msa0542260:intron | 35.0% |
| !! | TTTGTTGTTGAGCACTTGTT+TGG | - | chr4_1:26782821-26782840 | Msa0542260:intron | 35.0% |
| ! | ACTTGTTAGACTCCTTAGAA+AGG | - | chr4_1:26782945-26782964 | Msa0542260:five_prime_UTR | 35.0% |
| CTTGTTAGACTCCTTAGAAA+GGG | - | chr4_1:26782946-26782965 | Msa0542260:five_prime_UTR | 35.0% | |
| AGGATTAAGTGTGTGTGTGA+CGG | + | chr4_1:26778222-26778241 | None:intergenic | 40.0% | |
| CAATGAGGTCAATGCAATCT+AGG | - | chr4_1:26778836-26778855 | Msa0542260:intron | 40.0% | |
| ! | ATGGTACAACAGGTGTTGTA+TGG | + | chr4_1:26778885-26778904 | None:intergenic | 40.0% |
| ACGGATTCCATAAACGGTTA+AGG | + | chr4_1:26779039-26779058 | None:intergenic | 40.0% | |
| ! | ATTCTGGTGATAGTGAGACA+AGG | - | chr4_1:26779336-26779355 | Msa0542260:intron | 40.0% |
| ! | TTCTGGTGATAGTGAGACAA+GGG | - | chr4_1:26779337-26779356 | Msa0542260:intron | 40.0% |
| ATAGCGAGTGTGATAAGCTA+TGG | - | chr4_1:26779387-26779406 | Msa0542260:intron | 40.0% | |
| CTATGGACATCATCAGAAGA+GGG | - | chr4_1:26779404-26779423 | Msa0542260:intron | 40.0% | |
| TGGCATTTGAATGACCGATT+GGG | - | chr4_1:26779449-26779468 | Msa0542260:intron | 40.0% | |
| CTACTGCTTTGCCTAATCTA+TGG | + | chr4_1:26779648-26779667 | None:intergenic | 40.0% | |
| CATAGATTAGGCAAAGCAGT+AGG | - | chr4_1:26779646-26779665 | Msa0542260:intron | 40.0% | |
| GCAGAGCAAAATGAGATTTC+TGG | + | chr4_1:26779760-26779779 | None:intergenic | 40.0% | |
| TTGCCGTGTAAAATGTTCGT+GGG | + | chr4_1:26780084-26780103 | None:intergenic | 40.0% | |
| ATTGCCGTGTAAAATGTTCG+TGG | + | chr4_1:26780085-26780104 | None:intergenic | 40.0% | |
| !! | GTTTTGTTCCATCAGTTTCG+TGG | - | chr4_1:26780582-26780601 | Msa0542260:intron | 40.0% |
| TGTTGGAGTGTGTTTGATGT+GGG | - | chr4_1:26780951-26780970 | Msa0542260:intron | 40.0% | |
| TCCCTCCCTTTCAGATTAAT+GGG | - | chr4_1:26781194-26781213 | Msa0542260:intron | 40.0% | |
| ACCCATTAATCTGAAAGGGA+GGG | + | chr4_1:26781198-26781217 | None:intergenic | 40.0% | |
| AACCCATTAATCTGAAAGGG+AGG | + | chr4_1:26781199-26781218 | None:intergenic | 40.0% | |
| TTTAAGTGACATCAACCCTG+GGG | + | chr4_1:26781233-26781252 | None:intergenic | 40.0% | |
| !! | CTTTTAAGTGACATCAACCC+TGG | + | chr4_1:26781235-26781254 | None:intergenic | 40.0% |
| TTGATCTTTCACCAGCAAGT+TGG | - | chr4_1:26781257-26781276 | Msa0542260:intron | 40.0% | |
| CCCGATATATCATATTCCCA+TGG | - | chr4_1:26781505-26781524 | Msa0542260:intron | 40.0% | |
| ! | ATGAAAGTGTGTGGTAAGTG+AGG | + | chr4_1:26781562-26781581 | None:intergenic | 40.0% |
| ATGTAGGAGTGAATCGTGTA+TGG | + | chr4_1:26782396-26782415 | None:intergenic | 40.0% | |
| GTGCAAAAAGCTAATAGGCA+TGG | + | chr4_1:26782432-26782451 | None:intergenic | 40.0% | |
| TGGAAGAGACTCAAGAGAAA+AGG | - | chr4_1:26782527-26782546 | Msa0542260:intron | 40.0% | |
| AGAGACTCAAGAGAAAAGGA+AGG | - | chr4_1:26782531-26782550 | Msa0542260:intron | 40.0% | |
| ACTCAAGAGAAAAGGAAGGA+AGG | - | chr4_1:26782535-26782554 | Msa0542260:intron | 40.0% | |
| TTGTACGTGGCTAAACCAAA+TGG | + | chr4_1:26782580-26782599 | None:intergenic | 40.0% | |
| ACAAGATGCAAGGGAATTTG+TGG | - | chr4_1:26782596-26782615 | Msa0542260:intron | 40.0% | |
| CAAGATGCAAGGGAATTTGT+GGG | - | chr4_1:26782597-26782616 | Msa0542260:intron | 40.0% | |
| AAGATGCAAGGGAATTTGTG+GGG | - | chr4_1:26782598-26782617 | Msa0542260:intron | 40.0% | |
| TATGTAGTGTGGCAGATTCA+TGG | - | chr4_1:26782662-26782681 | Msa0542260:intron | 40.0% | |
| TGTATAGCCTCTTTGTGAAG+AGG | - | chr4_1:26782990-26783009 | Msa0542260:five_prime_UTR | 40.0% | |
| CAAAGAACCTCTTCACAAAG+AGG | + | chr4_1:26783000-26783019 | None:intergenic | 40.0% | |
| TGTGTGTAGAGAGGTAGATT+AGG | - | chr4_1:26783018-26783037 | Msa0542260:five_prime_UTR | 40.0% | |
| ! | TTCGATGAATGGAGTGCCTA+TGG | - | chr4_1:26779109-26779128 | Msa0542260:intron | 45.0% |
| GCTATGGACATCATCAGAAG+AGG | - | chr4_1:26779403-26779422 | Msa0542260:intron | 45.0% | |
| CATCTGAGCAAGATAGTCTC+TGG | - | chr4_1:26779429-26779448 | Msa0542260:intron | 45.0% | |
| CTGGCATTTGAATGACCGAT+TGG | - | chr4_1:26779448-26779467 | Msa0542260:intron | 45.0% | |
| GTGTTGGAGTGTGTTTGATG+TGG | - | chr4_1:26780950-26780969 | Msa0542260:intron | 45.0% | |
| GTTGGAGTGTGTTTGATGTG+GGG | - | chr4_1:26780952-26780971 | Msa0542260:intron | 45.0% | |
| !! | TAGCACAGCCGTTGATTCTA+TGG | - | chr4_1:26781159-26781178 | Msa0542260:intron | 45.0% |
| GTCCCTCCCTTTCAGATTAA+TGG | - | chr4_1:26781193-26781212 | Msa0542260:intron | 45.0% | |
| ! | TCTTTCACCAGCAAGTTGGA+TGG | - | chr4_1:26781261-26781280 | Msa0542260:intron | 45.0% |
| ! | AGGGGGAGAAAAGTGCAATT+TGG | + | chr4_1:26781931-26781950 | None:intergenic | 45.0% |
| !! | CAATTTTGGCCCCCTGTTTT+GGG | + | chr4_1:26782057-26782076 | None:intergenic | 45.0% |
| GAGAAAAGGAAGGAAGGTGA+AGG | - | chr4_1:26782541-26782560 | Msa0542260:intron | 45.0% | |
| GGCATCTCATTGCAACCATT+TGG | - | chr4_1:26782562-26782581 | Msa0542260:intron | 45.0% | |
| TTAGCCACGTACAAGATGCA+AGG | - | chr4_1:26782586-26782605 | Msa0542260:intron | 45.0% | |
| TAGCCACGTACAAGATGCAA+GGG | - | chr4_1:26782587-26782606 | Msa0542260:intron | 45.0% | |
| ATTCCCTTGCATCTTGTACG+TGG | + | chr4_1:26782593-26782612 | None:intergenic | 45.0% | |
| ! | GCTGGTTTCACTATGTAGTG+TGG | - | chr4_1:26782651-26782670 | Msa0542260:intron | 45.0% |
| GAGGTTCTTTGTGTGTAGAG+AGG | - | chr4_1:26783009-26783028 | Msa0542260:five_prime_UTR | 45.0% | |
| GTGTAGAGAGGTAGATTAGG+AGG | - | chr4_1:26783021-26783040 | Msa0542260:five_prime_UTR | 45.0% | |
| !! | ACTAAAAATTTAAATTTATA+AGG | - | chr4_1:26780760-26780779 | Msa0542260:intron | 5.0% |
| !!! | ATTAAAAGTTTTTTTTTTTA+GGG | + | chr4_1:26781785-26781804 | None:intergenic | 5.0% |
| !!! | AAAATTTTCATTTTTTAATA+GGG | - | chr4_1:26782197-26782216 | Msa0542260:CDS | 5.0% |
| !! | AAAAAATATTAAAATTATGA+AGG | - | chr4_1:26782474-26782493 | Msa0542260:intron | 5.0% |
| GTGTGACGGTGATTGAGGAA+AGG | + | chr4_1:26778208-26778227 | None:intergenic | 50.0% | |
| TGTGTGTGTGACGGTGATTG+AGG | + | chr4_1:26778213-26778232 | None:intergenic | 50.0% | |
| GATTGGAACTCCAACGCCAT+AGG | + | chr4_1:26779128-26779147 | None:intergenic | 50.0% | |
| GGTTAGCAGAAAGATCCCCA+GGG | - | chr4_1:26781215-26781234 | Msa0542260:intron | 50.0% | |
| ! | CAAGTTGGATGGCAGTTGCT+TGG | - | chr4_1:26781272-26781291 | Msa0542260:intron | 50.0% |
| !! | GCAATTTTGGCCCCCTGTTT+TGG | + | chr4_1:26782058-26782077 | None:intergenic | 50.0% |
| !! | TTGTGGGGCTCTGGAAAATG+TGG | - | chr4_1:26782613-26782632 | Msa0542260:intron | 50.0% |
| !! | GGGCTCTGGAAAATGTGGTA+GGG | - | chr4_1:26782618-26782637 | Msa0542260:intron | 50.0% |
| TGGTAGGGACCAAGAAAAGC+TGG | - | chr4_1:26782633-26782652 | Msa0542260:intron | 50.0% | |
| TACTTCATGGGCATTCGGCA+TGG | - | chr4_1:26782721-26782740 | Msa0542260:intron | 50.0% | |
| ! | GAATGGAGTGCCTATGGCGT+TGG | - | chr4_1:26779115-26779134 | Msa0542260:intron | 55.0% |
| ! | GGGTTAGCAGAAAGATCCCC+AGG | - | chr4_1:26781214-26781233 | Msa0542260:intron | 55.0% |
| GCAACTGCCATCCAACTTGC+TGG | + | chr4_1:26781271-26781290 | None:intergenic | 55.0% | |
| ACGCCACGTGTCCCAAAACA+GGG | - | chr4_1:26782043-26782062 | Msa0542260:CDS | 55.0% | |
| CAAGGGAATTTGTGGGGCTC+TGG | - | chr4_1:26782604-26782623 | Msa0542260:intron | 55.0% | |
| !! | GGGGCTCTGGAAAATGTGGT+AGG | - | chr4_1:26782617-26782636 | Msa0542260:intron | 55.0% |
| GGGCATTCGGCATGGCTAAA+AGG | - | chr4_1:26782729-26782748 | Msa0542260:intron | 55.0% | |
| GACGCCACGTGTCCCAAAAC+AGG | - | chr4_1:26782042-26782061 | Msa0542260:CDS | 60.0% | |
| CGCCACGTGTCCCAAAACAG+GGG | - | chr4_1:26782044-26782063 | Msa0542260:CDS | 60.0% | |
| GCCACGTGTCCCAAAACAGG+GGG | - | chr4_1:26782045-26782064 | Msa0542260:CDS | 60.0% | |
| !!! | GCCCCCTGTTTTGGGACACG+TGG | + | chr4_1:26782049-26782068 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 26778153 | 26783115 | 26778153 | ID=Msa0542260;Name=Msa0542260 |
| chr4_1 | mRNA | 26778153 | 26783115 | 26778153 | ID=Msa0542260-mRNA-1;Parent=Msa0542260;Name=Msa0542260-mRNA-1;_AED=0.11;_eAED=0.11;_QI=349|1|1|1|0.83|0.71|7|368|307 |
| chr4_1 | exon | 26778153 | 26778762 | 26778153 | ID=Msa0542260-mRNA-1:exon:7285;Parent=Msa0542260-mRNA-1 |
| chr4_1 | exon | 26779675 | 26779766 | 26779675 | ID=Msa0542260-mRNA-1:exon:7284;Parent=Msa0542260-mRNA-1 |
| chr4_1 | exon | 26779975 | 26780060 | 26779975 | ID=Msa0542260-mRNA-1:exon:7283;Parent=Msa0542260-mRNA-1 |
| chr4_1 | exon | 26781733 | 26781943 | 26781733 | ID=Msa0542260-mRNA-1:exon:7282;Parent=Msa0542260-mRNA-1 |
| chr4_1 | exon | 26782038 | 26782246 | 26782038 | ID=Msa0542260-mRNA-1:exon:7281;Parent=Msa0542260-mRNA-1 |
| chr4_1 | exon | 26782347 | 26782485 | 26782347 | ID=Msa0542260-mRNA-1:exon:7280;Parent=Msa0542260-mRNA-1 |
| chr4_1 | exon | 26782822 | 26783115 | 26782822 | ID=Msa0542260-mRNA-1:exon:7279;Parent=Msa0542260-mRNA-1 |
| chr4_1 | five_prime_UTR | 26782822 | 26783115 | 26782822 | ID=Msa0542260-mRNA-1:five_prime_utr;Parent=Msa0542260-mRNA-1 |
| chr4_1 | five_prime_UTR | 26782431 | 26782485 | 26782431 | ID=Msa0542260-mRNA-1:five_prime_utr;Parent=Msa0542260-mRNA-1 |
| chr4_1 | CDS | 26782347 | 26782430 | 26782347 | ID=Msa0542260-mRNA-1:cds;Parent=Msa0542260-mRNA-1 |
| chr4_1 | CDS | 26782038 | 26782246 | 26782038 | ID=Msa0542260-mRNA-1:cds;Parent=Msa0542260-mRNA-1 |
| chr4_1 | CDS | 26781733 | 26781943 | 26781733 | ID=Msa0542260-mRNA-1:cds;Parent=Msa0542260-mRNA-1 |
| chr4_1 | CDS | 26779975 | 26780060 | 26779975 | ID=Msa0542260-mRNA-1:cds;Parent=Msa0542260-mRNA-1 |
| chr4_1 | CDS | 26779675 | 26779766 | 26779675 | ID=Msa0542260-mRNA-1:cds;Parent=Msa0542260-mRNA-1 |
| chr4_1 | CDS | 26778521 | 26778762 | 26778521 | ID=Msa0542260-mRNA-1:cds;Parent=Msa0542260-mRNA-1 |
| chr4_1 | three_prime_UTR | 26778153 | 26778520 | 26778153 | ID=Msa0542260-mRNA-1:three_prime_utr;Parent=Msa0542260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
