AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0677520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0677520 MtrunA17_Chr4g0022111 97.394 307 7 1 1 307 1 306 0.0 627
Msa0677520 MtrunA17_Chr2g0324081 77.705 305 63 2 8 307 10 314 1.16e-169 473
Msa0677520 MtrunA17_Chr1g0188731 44.109 331 142 10 9 301 13 338 7.14e-74 230
Msa0677520 MtrunA17_Chr8g0376071 40.181 331 159 8 5 301 51 376 6.03e-69 219
Msa0677520 MtrunA17_Chr6g0483721 37.143 350 156 8 3 307 67 397 8.86e-67 214
Msa0677520 MtrunA17_Chr4g0067961 38.788 330 165 7 2 301 65 387 5.88e-66 212
Msa0677520 MtrunA17_Chr1g0209341 37.994 329 158 7 8 301 89 406 7.03e-64 207
Msa0677520 MtrunA17_Chr6g0477851 44.195 267 103 7 78 301 14 277 3.70e-60 193
Msa0677520 MtrunA17_Chr2g0294991 36.858 331 167 8 3 301 124 444 1.20e-56 189
Msa0677520 MtrunA17_Chr1g0195091 39.716 141 76 4 163 302 1 133 3.70e-29 108
Msa0677520 MtrunA17_Chr6g0467441 46.715 137 55 5 180 298 1 137 4.39e-27 105
Msa0677520 MtrunA17_Chr6g0481871 28.464 267 116 12 40 265 812 1044 1.24e-14 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0677520 AT4G03420.1 69.868 302 88 2 8 306 7 308 4.50e-146 413
Msa0677520 AT1G03610.1 64.423 312 96 5 1 306 4 306 1.13e-138 394
Msa0677520 AT4G28150.1 59.866 299 89 6 1 295 1 272 3.15e-113 329
Msa0677520 AT4G28150.2 59.866 299 87 7 1 295 1 270 4.28e-111 323
Msa0677520 AT1G03610.2 66.667 234 66 3 1 230 4 229 6.40e-106 309
Msa0677520 AT1G17830.1 50.932 322 132 9 3 301 13 331 4.34e-95 285
Msa0677520 AT1G73210.2 50.473 317 125 7 3 302 7 308 4.35e-95 284
Msa0677520 AT1G73210.3 50.158 317 128 7 3 302 7 310 8.73e-95 283
Msa0677520 AT1G73210.1 50.158 317 128 7 3 302 7 310 8.73e-95 283
Msa0677520 AT4G28150.3 59.701 201 67 4 1 197 1 191 2.84e-70 217
Msa0677520 AT2G01260.1 40.506 316 157 8 6 301 62 366 4.75e-63 204
Msa0677520 AT1G15030.1 38.629 321 170 7 3 301 42 357 3.20e-62 201
Msa0677520 AT5G49220.1 37.500 312 172 7 2 301 101 401 1.11e-59 196
Msa0677520 AT4G16100.1 38.111 307 169 6 9 302 88 386 3.33e-58 192
Msa0677520 AT1G15030.2 40.891 247 120 6 3 227 42 284 2.53e-48 163
Msa0677520 AT2G01260.2 41.250 240 115 5 6 226 62 294 3.17e-48 164
Msa0677520 AT5G23380.1 35.948 306 167 7 7 302 6 292 5.91e-42 147
Msa0677520 AT5G23380.3 36.522 230 119 5 7 226 6 218 5.11e-29 111
Msa0677520 AT5G23380.2 36.522 230 119 5 7 226 6 218 5.11e-29 111
Msa0677520 AT2G01260.3 35.519 183 92 5 6 169 62 237 1.19e-21 92.4
Msa0677520 AT5G08360.1 36.306 157 83 5 148 303 26 166 3.87e-19 84.0
Msa0677520 AT5G08360.2 34.815 135 72 4 169 303 3 121 1.19e-14 70.5

Find 106 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGAAACCTTAACCGTTTA+TGG 0.049207 4_4:-31444301 Msa0677520:CDS
GTCCCTCCCTTTCAGATTAA+TGG 0.178578 4_4:-31442150 Msa0677520:intron
CACCTTCCTTCCTCTTCTCT+TGG 0.218047 4_4:+31440767 None:intergenic
AGAGAAATAATTATAGTTAT+AGG 0.221661 4_4:+31444620 None:intergenic
CATTGTTGTTTAAGAAATAT+TGG 0.244569 4_4:-31444801 Msa0677520:five_prime_UTR
TTCAATAGTTACCCTTTCTA+AGG 0.259338 4_4:+31440345 None:intergenic
ATTTCACTCTGAGTGATCTT+TGG 0.265625 4_4:-31444250 Msa0677520:CDS
TACTAAGTAGTAATATTCTT+TGG 0.273648 4_4:+31440229 None:intergenic
GAGAAATAATTATAGTTATA+GGG 0.277082 4_4:+31444621 None:intergenic
AACATAGAAAATGCAATTAA+TGG 0.278698 4_4:+31440459 None:intergenic
GGGCATTCGGCATGGCTAAA+AGG 0.299665 4_4:-31440575 Msa0677520:exon
CGGGAAATAAACAAAATAAA+AGG 0.302913 4_4:+31445120 None:intergenic
TATTTACAAGCAATAATTTC+AGG 0.321189 4_4:-31444121 Msa0677520:intron
AAATTTACCTTATCAATTAG+AGG 0.328507 4_4:+31443808 None:intergenic
TTTGGAATTGTTTCGATGAA+TGG 0.331760 4_4:-31444232 Msa0677520:CDS
ACCTTCCTTCCTCTTCTCTT+GGG 0.337222 4_4:+31440768 None:intergenic
AGGTCAATATATAAAGTATT+AGG 0.337684 4_4:+31440530 None:intergenic
CCCATGGGAATATGATATAT+CGG 0.340823 4_4:+31441835 None:intergenic
TCCCTCCCTTTCAGATTAAT+GGG 0.345433 4_4:-31442149 Msa0677520:intron
AAGTTGAGAAATGTCTATAT+AGG 0.346692 4_4:+31445189 None:intergenic
ACACTTTCATCTTCATTTCA+AGG 0.353986 4_4:-31441769 Msa0677520:intron
TCATGACTTTAATTACTTCA+TGG 0.353997 4_4:-31440596 Msa0677520:CDS
CAAGGGAATTTGTGGGTCTC+TGG 0.377765 4_4:-31440700 Msa0677520:CDS
GAGTGAAACTGAAAAGAAAA+TGG 0.379593 4_4:+31445090 None:intergenic
TTTGTTGTTGAGCACTTGTT+TGG 0.390396 4_4:-31440483 Msa0677520:three_prime_UTR
AGTTGAGAAATGTCTATATA+GGG 0.393563 4_4:+31445190 None:intergenic
GGCATCTCTTTGCAACCATT+TGG 0.394890 4_4:-31440742 Msa0677520:CDS
GAAAAGAAAATGGTCTTTCC+CGG 0.407009 4_4:+31445100 None:intergenic
ACTAAGTAGTAATATTCTTT+GGG 0.411838 4_4:+31440230 None:intergenic
GCAACTGCCATCCAACTTGC+TGG 0.415630 4_4:+31442075 None:intergenic
TGTGTGTAGAGAGGTAGATT+AGG 0.416327 4_4:-31440284 Msa0677520:three_prime_UTR
ATTGCTATTTGTTACAGAAA+AGG 0.417937 4_4:-31444846 Msa0677520:five_prime_UTR
ACCATCTAAGTTTCTACAAA+AGG 0.419530 4_4:-31444430 Msa0677520:intron
TTCATGGTTGAAGCAACTTA+AGG 0.420063 4_4:-31440626 Msa0677520:CDS
TATCACACGGATTCCATAAA+CGG 0.423998 4_4:+31444288 None:intergenic
TTAATTACTTCATGGGCATT+CGG 0.424039 4_4:-31440588 Msa0677520:CDS
CATGACTTTAATTACTTCAT+GGG 0.433693 4_4:-31440595 Msa0677520:CDS
ACGGATTCCATAAACGGTTA+AGG 0.435111 4_4:+31444294 None:intergenic
CAATGAGGTCAATGCAATCT+AGG 0.444961 4_4:-31444494 Msa0677520:CDS
AGAAACTTAGATGGTACAAT+AGG 0.450966 4_4:+31444438 None:intergenic
TTGTTTCATGCGTTTAAGAA+AGG 0.457439 4_4:+31444940 None:intergenic
ATTAGAGGAACTCTTCCATA+TGG 0.461032 4_4:+31443823 None:intergenic
ATCTTTAATTGTTCTTCCCA+TGG 0.468483 4_4:+31441819 None:intergenic
CTGGCATTTGAATGACCGAT+TGG 0.470292 4_4:-31443881 Msa0677520:CDS
ACAAGATGCAAGGGAATTTG+TGG 0.474690 4_4:-31440708 Msa0677520:CDS
AAGAGTTCCTCTAATTGATA+AGG 0.483084 4_4:-31443815 Msa0677520:intron
CCATGGGAATATGATATATC+GGG 0.486988 4_4:+31441836 None:intergenic
GTGTAGAGAGGTAGATTAGG+AGG 0.491169 4_4:-31440281 Msa0677520:three_prime_UTR
TATGTAGTGTGGCAGATTCA+TGG 0.496401 4_4:-31440642 Msa0677520:CDS
GAGGTTCTTTGTGTGTAGAG+AGG 0.496735 4_4:-31440293 Msa0677520:three_prime_UTR
ATTTGAATTGCAGAGAGGTA+AGG 0.504614 4_4:+31444143 None:intergenic
TCTCTTCAATCTCATTATCA+AGG 0.505817 4_4:+31440791 None:intergenic
CAAGTTGGATGGCAGTTGCT+TGG 0.508186 4_4:-31442071 Msa0677520:intron
TCTTTAATTGTTCTTCCCAT+GGG 0.512415 4_4:+31441820 None:intergenic
ACTTGTTAGACTCCTTAGAA+AGG 0.516744 4_4:-31440357 Msa0677520:three_prime_UTR
CATCTGAGCAAGATAGTCTC+TGG 0.520611 4_4:-31443900 Msa0677520:CDS
CTTGTTAGACTCCTTAGAAA+GGG 0.522238 4_4:-31440356 Msa0677520:three_prime_UTR
TGGCATTTGAATGACCGATT+GGG 0.527348 4_4:-31443880 Msa0677520:CDS
TATGGTGAAGAAAGCAATCA+AGG 0.530917 4_4:+31444466 None:intergenic
TTGTACGTGGCTAAACCAAA+TGG 0.531561 4_4:+31440727 None:intergenic
AGAGGTAAGGAACATAGTAT+TGG 0.534665 4_4:+31444156 None:intergenic
TGTATAACCTCTTTGTGAAG+AGG 0.535031 4_4:-31440312 Msa0677520:three_prime_UTR
ACCCAAGAGAAGAGGAAGGA+AGG 0.536768 4_4:-31440769 Msa0677520:CDS
TGGTAGGGACCAAGAAAAGC+TGG 0.539606 4_4:-31440671 Msa0677520:CDS
CCCGATATATCATATTCCCA+TGG 0.539980 4_4:-31441836 Msa0677520:CDS
TATTGGAGTATGTATGTAGG+AGG 0.542112 4_4:-31440427 Msa0677520:three_prime_UTR
GGAAATAAAGATGACCCAAT+CGG 0.546064 4_4:+31443866 None:intergenic
TTCGATGAATGGAGTGCCTA+TGG 0.551127 4_4:-31444221 Msa0677520:CDS
TTGATCTATCACCAGCAAGT+TGG 0.551938 4_4:-31442086 Msa0677520:CDS
CAAGATGCAAGGGAATTTGT+GGG 0.553402 4_4:-31440707 Msa0677520:CDS
CAAAGAACCTCTTCACAAAG+AGG 0.557210 4_4:+31440305 None:intergenic
ATAGCGAGTGTGATAAGCTA+TGG 0.557766 4_4:-31443942 Msa0677520:CDS
ATGGTACAATAGGTGTTGTA+TGG 0.558926 4_4:+31444448 None:intergenic
TTGACCTCATTGTATATCAA+AGG 0.560370 4_4:+31444505 None:intergenic
TCTTCCTTTGATATACAATG+AGG 0.561900 4_4:-31444509 Msa0677520:exon
TACTTCATGGGCATTCGGCA+TGG 0.562500 4_4:-31440583 Msa0677520:CDS
GGGTCTCTGGAAAATGTGGT+AGG 0.563481 4_4:-31440687 Msa0677520:CDS
GGGTTAGCAGAAAGATACCC+AGG 0.563766 4_4:-31442129 Msa0677520:CDS
TGAAGTAATTAAAGTCATGA+TGG 0.564712 4_4:+31440599 None:intergenic
TTGAAGAGACCCAAGAGAAG+AGG 0.567330 4_4:-31440777 Msa0677520:CDS
TTCTGTTGATAGTGAGACAA+GGG 0.578931 4_4:-31443992 Msa0677520:CDS
AAAAGAAAATGGTCTTTCCC+GGG 0.579152 4_4:+31445101 None:intergenic
GATTGGAACTCCAACGCCAT+AGG 0.589508 4_4:+31444205 None:intergenic
GAATGGAGTGCCTATGGCGT+TGG 0.591581 4_4:-31444215 Msa0677520:CDS
CTATGGACATCATCAGAAGA+GGG 0.597455 4_4:-31443925 Msa0677520:CDS
TGTGTGTGTGACGGTGATTG+AGG 0.598944 4_4:+31445149 None:intergenic
CCGATATATCATATTCCCAT+GGG 0.601439 4_4:-31441835 Msa0677520:CDS
GGTCTCTGGAAAATGTGGTA+GGG 0.604733 4_4:-31440686 Msa0677520:CDS
TTAGCCACGTACAAGATGCA+AGG 0.611061 4_4:-31440718 Msa0677520:CDS
AGTAATTAAAGTCATGATGG+TGG 0.611478 4_4:+31440602 None:intergenic
ATGAAAGTGTGTGGTAAGTG+AGG 0.614288 4_4:+31441782 None:intergenic
GCTATGGACATCATCAGAAG+AGG 0.617480 4_4:-31443926 Msa0677520:CDS
TCAACTGTTTCTCTATCACA+CGG 0.620809 4_4:+31444275 None:intergenic
GAGAAGAGGAAGGAAGGTGA+AGG 0.622945 4_4:-31440763 Msa0677520:CDS
ATTCCCTTGCATCTTGTACG+TGG 0.626371 4_4:+31440714 None:intergenic
TCTATCACCAGCAAGTTGGA+TGG 0.627514 4_4:-31442082 Msa0677520:CDS
AGGATTAAGTGTGTGTGTGA+CGG 0.632588 4_4:+31445140 None:intergenic
TTGTGGGTCTCTGGAAAATG+TGG 0.635104 4_4:-31440691 Msa0677520:CDS
GTGTGACGGTGATTGAGGAA+AGG 0.642377 4_4:+31445154 None:intergenic
TAGCCACGTACAAGATGCAA+GGG 0.647629 4_4:-31440717 Msa0677520:CDS
TAAATATTTGAATTGCAGAG+AGG 0.649675 4_4:+31444138 None:intergenic
AGAGACCCAAGAGAAGAGGA+AGG 0.659862 4_4:-31440773 Msa0677520:CDS
ATTCTGTTGATAGTGAGACA+AGG 0.662823 4_4:-31443993 Msa0677520:CDS
GCTGGTTTCACTATGTAGTG+TGG 0.665797 4_4:-31440653 Msa0677520:CDS
GGTTAGCAGAAAGATACCCA+GGG 0.695930 4_4:-31442128 Msa0677520:CDS
GAAATGAAGATGAAAGTGTG+TGG 0.729995 4_4:+31441773 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAATAAAAAATATAAT+AGG - chr4_4:31442074-31442093 Msa0677520:CDS 0.0%
!!! TTTTTTTATTTTGAAGAAAA+AGG + chr4_4:31440383-31440402 None:intergenic 10.0%
!!! ATCAATATTTTTTTTTTTGA+AGG + chr4_4:31440646-31440665 None:intergenic 10.0%
!!! CTTTATTTTATCTTTTTTTT+TGG - chr4_4:31441951-31441970 Msa0677520:intron 10.0%
!!! TTTTTTTTTTGACAAAAAAT+AGG + chr4_4:31442533-31442552 None:intergenic 10.0%
!!! ATTTTTTGTCAAAAAAAAAA+AGG - chr4_4:31442533-31442552 Msa0677520:intron 10.0%
!!! CTAAAAATTTAACTTTTATA+AGG - chr4_4:31442840-31442859 Msa0677520:intron 10.0%
!! ATAAATGAAATAATTATTAC+GGG + chr4_4:31443801-31443820 None:intergenic 10.0%
!!! TTTTTTCATTTTTTTATTAG+GGG + chr4_4:31444058-31444077 None:intergenic 10.0%
!!! CAAAATTTCATTTTTAAATA+GGG - chr4_4:31444274-31444293 Msa0677520:CDS 10.0%
!!! AAAATTTCATTTTTAAATAG+GGG - chr4_4:31444275-31444294 Msa0677520:CDS 10.0%
!! ACAAATTATGAAAAAAAATA+AGG + chr4_4:31444349-31444368 None:intergenic 10.0%
!!! TCTATGTTTTTTATTTTTAT+TGG - chr4_4:31444971-31444990 Msa0677520:five_prime_UTR 10.0%
!! GAGAAATAATTATAGTTATA+GGG + chr4_4:31440797-31440816 None:intergenic 15.0%
!! AGAGAAATAATTATAGTTAT+AGG + chr4_4:31440798-31440817 None:intergenic 15.0%
!!! TTTTTTCCTTTTATGATTTT+TGG - chr4_4:31441029-31441048 Msa0677520:intron 15.0%
!! AATAAACCAAAAATCATAAA+AGG + chr4_4:31441038-31441057 None:intergenic 15.0%
!! AGAAACATGTAATTAAAAAA+TGG + chr4_4:31441697-31441716 None:intergenic 15.0%
!!! AAATTTTTAATCTATGGATT+AGG - chr4_4:31441755-31441774 Msa0677520:intron 15.0%
!! GTTAACATTATAATATTTCA+AGG - chr4_4:31442047-31442066 Msa0677520:intron 15.0%
!! CATAATAAAATAAAATAGGT+GGG + chr4_4:31442560-31442579 None:intergenic 15.0%
!! AGTCCATAATAAAATAAAAT+AGG + chr4_4:31442564-31442583 None:intergenic 15.0%
!! TTGGAAAAATTAAACTAATT+TGG + chr4_4:31442661-31442680 None:intergenic 15.0%
!!! AGTGAATTTCATTTTATAAA+AGG - chr4_4:31442876-31442895 Msa0677520:intron 15.0%
!! ATGACAATTATAAAAGATTA+AGG + chr4_4:31443408-31443427 None:intergenic 15.0%
!!! CATTTTTCTTTAATTAGTAA+AGG - chr4_4:31443425-31443444 Msa0677520:intron 15.0%
!!! TTTTTCATTTTTTTATTAGG+GGG + chr4_4:31444057-31444076 None:intergenic 15.0%
!!! CAATTTTTTGTAAAGATAAA+GGG - chr4_4:31444153-31444172 Msa0677520:CDS 15.0%
!! ATATATTCCTTAAAAAATAG+AGG - chr4_4:31444250-31444269 Msa0677520:CDS 15.0%
!! TATATTCCTTAAAAAATAGA+GGG - chr4_4:31444251-31444270 Msa0677520:CDS 15.0%
!!! GCAAAATTTCATTTTTAAAT+AGG - chr4_4:31444273-31444292 Msa0677520:CDS 15.0%
!!! ATTGCAACATTTTAAAATTT+AGG - chr4_4:31444303-31444322 Msa0677520:CDS 15.0%
!!! CTTTTATTTTGTTTATTTCC+CGG - chr4_4:31440296-31440315 Msa0677520:three_prime_UTR 20.0%
!!! TTTTATTTTGTTTATTTCCC+GGG - chr4_4:31440297-31440316 Msa0677520:three_prime_UTR 20.0%
!!! CATTGTTGTTTAAGAAATAT+TGG - chr4_4:31440614-31440633 Msa0677520:CDS 20.0%
!! TGATGTCTAAGAAATAAAAA+AGG - chr4_4:31440662-31440681 Msa0677520:CDS 20.0%
!! CCAAATATGAGAAAAATAAA+GGG + chr4_4:31440828-31440847 None:intergenic 20.0%
!!! CCTTTATTTTTCTCATATTT+GGG - chr4_4:31440826-31440845 Msa0677520:intron 20.0%
!! ATCATAAAAGGAAAAAAGAA+TGG + chr4_4:31441026-31441045 None:intergenic 20.0%
!! TATTTACAAGCAATAATTTC+AGG - chr4_4:31441294-31441313 Msa0677520:intron 20.0%
!! AAATTTACCTTATCAATTAG+AGG + chr4_4:31441610-31441629 None:intergenic 20.0%
!!! AGTAGGAAATTTTTAATCTA+TGG - chr4_4:31441749-31441768 Msa0677520:intron 20.0%
!!! AAGATAGGAATTTTATTCTA+AGG - chr4_4:31442017-31442036 Msa0677520:intron 20.0%
!!! AATTTTATTCTAAGGATGTT+TGG - chr4_4:31442025-31442044 Msa0677520:intron 20.0%
!!! AGTTTACTAAATTTTATTGC+CGG + chr4_4:31442173-31442192 None:intergenic 20.0%
!! AAAGAACTTGAGATTTAAAT+CGG - chr4_4:31442284-31442303 Msa0677520:intron 20.0%
!! CAATGAAAATTACAAAGATA+AGG + chr4_4:31442447-31442466 None:intergenic 20.0%
!!! TCTTTGTAATTTTCATTGAT+TGG - chr4_4:31442449-31442468 Msa0677520:intron 20.0%
!! CTAGACAATAATTTAACTAA+AGG + chr4_4:31442504-31442523 None:intergenic 20.0%
!! CTTTAGTTAAATTATTGTCT+AGG - chr4_4:31442502-31442521 Msa0677520:intron 20.0%
!!! TTTTTTGACAAAAAATAGGT+GGG + chr4_4:31442529-31442548 None:intergenic 20.0%
!!! TTTTTTTGACAAAAAATAGG+TGG + chr4_4:31442530-31442549 None:intergenic 20.0%
!! CCATAATAAAATAAAATAGG+TGG + chr4_4:31442561-31442580 None:intergenic 20.0%
!!! CCACCTATTTTATTTTATTA+TGG - chr4_4:31442558-31442577 Msa0677520:intron 20.0%
!!! GGGTATATTTTCAATTAAAT+CGG - chr4_4:31442707-31442726 Msa0677520:intron 20.0%
!!! GGTATATTTTCAATTAAATC+GGG - chr4_4:31442708-31442727 Msa0677520:intron 20.0%
!!! TTTTTTATTTTTCAGACACT+CGG + chr4_4:31442797-31442816 None:intergenic 20.0%
!!! TTTAACTTTTATAAGGTAAG+AGG - chr4_4:31442847-31442866 Msa0677520:intron 20.0%
!! TAACAACTATAACAATTTGT+TGG + chr4_4:31442973-31442992 None:intergenic 20.0%
!!! AAATGTTGTAGATATTTTGA+TGG - chr4_4:31443116-31443135 Msa0677520:intron 20.0%
!!! AAGATTTTAAGCACTAATTT+AGG - chr4_4:31443188-31443207 Msa0677520:intron 20.0%
!! TTAATTAGTAAAGGTAGAAA+TGG - chr4_4:31443434-31443453 Msa0677520:intron 20.0%
!! AATGGTTAAATTAGTACATT+TGG - chr4_4:31443452-31443471 Msa0677520:intron 20.0%
!!! ATGTACTAAATTTTCATGTT+TGG - chr4_4:31443488-31443507 Msa0677520:intron 20.0%
!!! TACTCTTTGTTGATATTTTT+AGG - chr4_4:31443554-31443573 Msa0677520:intron 20.0%
!! ATCCCTTATAGTATTAAAAT+TGG - chr4_4:31443741-31443760 Msa0677520:intron 20.0%
!!! GTCCAATTTTAATACTATAA+GGG + chr4_4:31443746-31443765 None:intergenic 20.0%
!! AATAATTATTACGGGATAAA+AGG + chr4_4:31443793-31443812 None:intergenic 20.0%
!! TATGATAGTAAATAGATCAA+TGG - chr4_4:31443927-31443946 Msa0677520:CDS 20.0%
!!! GCAATTTTTTGTAAAGATAA+AGG - chr4_4:31444152-31444171 Msa0677520:CDS 20.0%
!!! AGGTCAATATATAAAGTATT+AGG + chr4_4:31444888-31444907 None:intergenic 20.0%
!! AACATAGAAAATGCAATTAA+TGG + chr4_4:31444959-31444978 None:intergenic 20.0%
!! ACTAAGTAGTAATATTCTTT+GGG + chr4_4:31445188-31445207 None:intergenic 20.0%
!! TACTAAGTAGTAATATTCTT+TGG + chr4_4:31445189-31445208 None:intergenic 20.0%
! AGTTGAGAAATGTCTATATA+GGG + chr4_4:31440228-31440247 None:intergenic 25.0%
! AAGTTGAGAAATGTCTATAT+AGG + chr4_4:31440229-31440248 None:intergenic 25.0%
! CGGGAAATAAACAAAATAAA+AGG + chr4_4:31440298-31440317 None:intergenic 25.0%
!!! AAAGGTGTTTTTGTTTTATG+AGG + chr4_4:31440365-31440384 None:intergenic 25.0%
!!! TGTTTGTTTTACAAGGTTTA+AGG - chr4_4:31440429-31440448 Msa0677520:three_prime_UTR 25.0%
!!! ATTGCTATTTGTTACAGAAA+AGG - chr4_4:31440569-31440588 Msa0677520:exon 25.0%
!!! TATTTTTCGGTGGAAAAAAT+GGG - chr4_4:31440696-31440715 Msa0677520:CDS 25.0%
!!! TTATGACTCTTTTTTAGTAG+AGG - chr4_4:31440746-31440765 Msa0677520:CDS 25.0%
!!! CCCTTTATTTTTCTCATATT+TGG - chr4_4:31440825-31440844 Msa0677520:intron 25.0%
! CCCAAATATGAGAAAAATAA+AGG + chr4_4:31440829-31440848 None:intergenic 25.0%
!! TCCAATCAACTTTAAAAATG+AGG - chr4_4:31441226-31441245 Msa0677520:intron 25.0%
!!! TCCTCATTTTTAAAGTTGAT+TGG + chr4_4:31441230-31441249 None:intergenic 25.0%
! TAAATATTTGAATTGCAGAG+AGG + chr4_4:31441280-31441299 None:intergenic 25.0%
!!! GAGTTGATTTTTCAAAATAC+TGG + chr4_4:31441573-31441592 None:intergenic 25.0%
! TTTGAAAAATCAACTCCATA+TGG - chr4_4:31441577-31441596 Msa0677520:intron 25.0%
! GTACAAAGTGACAATTTATT+AGG + chr4_4:31441868-31441887 None:intergenic 25.0%
! ACTGTATCAAATTTATTCCT+AGG - chr4_4:31441988-31442007 Msa0677520:intron 25.0%
! ATTCCTAGGAATATAAAGAT+AGG - chr4_4:31442002-31442021 Msa0677520:intron 25.0%
! ATTCCTATCTTTATATTCCT+AGG + chr4_4:31442008-31442027 None:intergenic 25.0%
!! AAAAGTTTTCCCAAAGAAAA+TGG + chr4_4:31442127-31442146 None:intergenic 25.0%
!! GTTTACTAAATTTTATTGCC+GGG + chr4_4:31442172-31442191 None:intergenic 25.0%
!!! TGATGTTTTTGTATTTCTCT+CGG + chr4_4:31442600-31442619 None:intergenic 25.0%
!! ACAAAAACATCACTATTTCT+TGG - chr4_4:31442608-31442627 Msa0677520:intron 25.0%
!! CAAAAACATCACTATTTCTT+GGG - chr4_4:31442609-31442628 Msa0677520:intron 25.0%
! TGATGGAACAAAATTCTAAT+TGG + chr4_4:31442680-31442699 None:intergenic 25.0%
!!! CATTGTTTTTTTCACAGTTT+TGG + chr4_4:31442768-31442787 None:intergenic 25.0%
! ACCTGTTAATCACTTAAAAT+TGG - chr4_4:31442944-31442963 Msa0677520:intron 25.0%
!!! ACCAATTTTAAGTGATTAAC+AGG + chr4_4:31442948-31442967 None:intergenic 25.0%
! AAAAAAAAACTACCGTGTAT+AGG - chr4_4:31443083-31443102 Msa0677520:intron 25.0%
!!! ATTTTGATGGATCAACTAAA+AGG - chr4_4:31443129-31443148 Msa0677520:intron 25.0%
! AATTAGTATAAGCTATAGCA+AGG + chr4_4:31443385-31443404 None:intergenic 25.0%
!!! GGTCCAATTTTAATACTATA+AGG + chr4_4:31443747-31443766 None:intergenic 25.0%
! CTTATTTCCCTAAAGATAAA+GGG - chr4_4:31444185-31444204 Msa0677520:CDS 25.0%
!! CTTTTAACCCTTTATCTTTA+GGG + chr4_4:31444195-31444214 None:intergenic 25.0%
!! TCTTTTAACCCTTTATCTTT+AGG + chr4_4:31444196-31444215 None:intergenic 25.0%
!!! ATTTTGCCCTCTATTTTTTA+AGG + chr4_4:31444260-31444279 None:intergenic 25.0%
!!! GCAACATTTTAAAATTTAGG+AGG - chr4_4:31444306-31444325 Msa0677520:CDS 25.0%
!! AAAAAGTGCAAAAAGCTAAT+AGG + chr4_4:31444515-31444534 None:intergenic 25.0%
!!! TATTAGCTTTTTGCACTTTT+TGG - chr4_4:31444514-31444533 Msa0677520:exon 25.0%
! ATGAAGGAATGTGTATTAAA+TGG - chr4_4:31444566-31444585 Msa0677520:five_prime_UTR 25.0%
!! ACAAATTTTCAGCAAAAGTT+GGG + chr4_4:31444593-31444612 None:intergenic 25.0%
! TGAAGTAATTAAAGTCATGA+TGG + chr4_4:31444819-31444838 None:intergenic 25.0%
! TCATGACTTTAATTACTTCA+TGG - chr4_4:31444819-31444838 Msa0677520:five_prime_UTR 25.0%
! CATGACTTTAATTACTTCAT+GGG - chr4_4:31444820-31444839 Msa0677520:five_prime_UTR 25.0%
! TATCCTAAAAAAGAAGAGTT+AGG + chr4_4:31444911-31444930 None:intergenic 25.0%
!! TTTTATTGGAGTATGTATGT+AGG - chr4_4:31444985-31445004 Msa0677520:five_prime_UTR 25.0%
GAGTGAAACTGAAAAGAAAA+TGG + chr4_4:31440328-31440347 None:intergenic 30.0%
!!! TGCACTTTGTTTGTTTTACA+AGG - chr4_4:31440422-31440441 Msa0677520:three_prime_UTR 30.0%
TTGTTTCATGCGTTTAAGAA+AGG + chr4_4:31440478-31440497 None:intergenic 30.0%
TAAACGCATGAAACAAAAAC+AGG - chr4_4:31440482-31440501 Msa0677520:three_prime_UTR 30.0%
! ATTGGATTGAGTTTTCTTCA+AGG - chr4_4:31440505-31440524 Msa0677520:three_prime_UTR 30.0%
! GGCATAGATTGAGTATTTTT+CGG - chr4_4:31440683-31440702 Msa0677520:CDS 30.0%
!! ATAGATTGAGTATTTTTCGG+TGG - chr4_4:31440686-31440705 Msa0677520:CDS 30.0%
!! GTATTTTTCGGTGGAAAAAA+TGG - chr4_4:31440695-31440714 Msa0677520:CDS 30.0%
CAAAGGAAGAAAAAAGAACA+AGG + chr4_4:31440896-31440915 None:intergenic 30.0%
TCTTCCTTTGATATACAATG+AGG - chr4_4:31440906-31440925 Msa0677520:intron 30.0%
TTGACCTCATTGTATATCAA+AGG + chr4_4:31440913-31440932 None:intergenic 30.0%
AGAAACTTAGATGGTACAAT+AGG + chr4_4:31440980-31440999 None:intergenic 30.0%
ACCATCTAAGTTTCTACAAA+AGG - chr4_4:31440985-31441004 Msa0677520:intron 30.0%
! ACCTTTTGTAGAAACTTAGA+TGG + chr4_4:31440989-31441008 None:intergenic 30.0%
TTAGAAACCTTAACCGTTTA+TGG - chr4_4:31441114-31441133 Msa0677520:intron 30.0%
! TTTGGAATTGTTTCGATGAA+TGG - chr4_4:31441183-31441202 Msa0677520:intron 30.0%
AAGAGTTCCTCTAATTGATA+AGG - chr4_4:31441600-31441619 Msa0677520:intron 30.0%
AGAGATAAGAACATAAGACT+AGG + chr4_4:31441890-31441909 None:intergenic 30.0%
GTTCTTATCTCTTTCTTAAG+TGG - chr4_4:31441898-31441917 Msa0677520:intron 30.0%
TCTCTTTCTTAAGTGGAAAT+AGG - chr4_4:31441905-31441924 Msa0677520:intron 30.0%
! AGTTTTTCCACCATTTTCTT+TGG - chr4_4:31442114-31442133 Msa0677520:CDS 30.0%
! GTTTTTCCACCATTTTCTTT+GGG - chr4_4:31442115-31442134 Msa0677520:CDS 30.0%
GTTCTTTACTTGTTCACTTA+GGG + chr4_4:31442271-31442290 None:intergenic 30.0%
AGTTCTTTACTTGTTCACTT+AGG + chr4_4:31442272-31442291 None:intergenic 30.0%
TAAGAGACATTGTATTGTCT+AGG + chr4_4:31442311-31442330 None:intergenic 30.0%
! AAACCAAACAGCAAAAGTTT+TGG + chr4_4:31442419-31442438 None:intergenic 30.0%
!!! AAAACTTTTGCTGTTTGGTT+TGG - chr4_4:31442418-31442437 Msa0677520:intron 30.0%
AATCTTGGTATGTAAACTGT+GGG + chr4_4:31443015-31443034 None:intergenic 30.0%
AAATCTTGGTATGTAAACTG+TGG + chr4_4:31443016-31443035 None:intergenic 30.0%
ATTTGTATCGCAAGTTTGTA+AGG - chr4_4:31443032-31443051 Msa0677520:intron 30.0%
TGTTGAAATGTGTTTGATGT+GGG - chr4_4:31443055-31443074 Msa0677520:intron 30.0%
TTTGTCAACCATAGAATCAA+CGG + chr4_4:31443242-31443261 None:intergenic 30.0%
TGATTCTATGGTTGACAAAT+TGG - chr4_4:31443243-31443262 Msa0677520:intron 30.0%
TCTTTAATTGTTCTTCCCAT+GGG + chr4_4:31443598-31443617 None:intergenic 30.0%
ATCTTTAATTGTTCTTCCCA+TGG + chr4_4:31443599-31443618 None:intergenic 30.0%
ACACTTTCATCTTCATTTCA+AGG - chr4_4:31443646-31443665 Msa0677520:intron 30.0%
AGGTATTCCTTATACATGTT+TGG - chr4_4:31443666-31443685 Msa0677520:intron 30.0%
! TCCTTATACATGTTTGGAAT+TGG - chr4_4:31443672-31443691 Msa0677520:intron 30.0%
TCCAATTCCAAACATGTATA+AGG + chr4_4:31443676-31443695 None:intergenic 30.0%
TAGCTTAATCAACATATGAC+TGG + chr4_4:31443768-31443787 None:intergenic 30.0%
!!! TCGCAACATTTTGAAACTAA+GGG + chr4_4:31444028-31444047 None:intergenic 30.0%
!!! ATCGCAACATTTTGAAACTA+AGG + chr4_4:31444029-31444048 None:intergenic 30.0%
! GTTTCAAAATGTTGCGATTT+TGG - chr4_4:31444031-31444050 Msa0677520:intron 30.0%
TGCAACGTTTGTAAGATTAA+GGG + chr4_4:31444085-31444104 None:intergenic 30.0%
TTGCAACGTTTGTAAGATTA+AGG + chr4_4:31444086-31444105 None:intergenic 30.0%
GCTTATTTCCCTAAAGATAA+AGG - chr4_4:31444184-31444203 Msa0677520:CDS 30.0%
! CTTTTGACACTCAAACTTTA+TGG + chr4_4:31444227-31444246 None:intergenic 30.0%
TCAATTCGATTATCATCCAA+AGG - chr4_4:31444414-31444433 Msa0677520:intron 30.0%
TGGTAGTTGTACATAAATGT+AGG + chr4_4:31444490-31444509 None:intergenic 30.0%
! CACAAATTTTCAGCAAAAGT+TGG + chr4_4:31444594-31444613 None:intergenic 30.0%
GCTGAAAATTTGTGTAGATA+TGG - chr4_4:31444600-31444619 Msa0677520:five_prime_UTR 30.0%
TCTCTTCAATCTCATTATCA+AGG + chr4_4:31444627-31444646 None:intergenic 30.0%
AGTAATTAAAGTCATGATGG+TGG + chr4_4:31444816-31444835 None:intergenic 30.0%
TTAATTACTTCATGGGCATT+CGG - chr4_4:31444827-31444846 Msa0677520:five_prime_UTR 30.0%
!!! TGTTTACTTGAGAGCATTTT+TGG - chr4_4:31445029-31445048 Msa0677520:five_prime_UTR 30.0%
TTCAATAGTTACCCTTTCTA+AGG + chr4_4:31445073-31445092 None:intergenic 30.0%
AAAAGAAAATGGTCTTTCCC+GGG + chr4_4:31440317-31440336 None:intergenic 35.0%
GAAAAGAAAATGGTCTTTCC+CGG + chr4_4:31440318-31440337 None:intergenic 35.0%
GCATGAAACAAAAACAGGAT+TGG - chr4_4:31440487-31440506 Msa0677520:three_prime_UTR 35.0%
! TTGGGTTCTCATTTTCTTCA+AGG - chr4_4:31440844-31440863 Msa0677520:intron 35.0%
TATGGTGAAGAAAGCAATCA+AGG + chr4_4:31440952-31440971 None:intergenic 35.0%
! ATGGTACAATAGGTGTTGTA+TGG + chr4_4:31440970-31440989 None:intergenic 35.0%
TATCACACGGATTCCATAAA+CGG + chr4_4:31441130-31441149 None:intergenic 35.0%
! TCAACTGTTTCTCTATCACA+CGG + chr4_4:31441143-31441162 None:intergenic 35.0%
ATTTCACTCTGAGTGATCTT+TGG - chr4_4:31441165-31441184 Msa0677520:intron 35.0%
AGAGGTAAGGAACATAGTAT+TGG + chr4_4:31441262-31441281 None:intergenic 35.0%
ATTTGAATTGCAGAGAGGTA+AGG + chr4_4:31441275-31441294 None:intergenic 35.0%
! CACAGAAGAAAAAGTGCATT+TGG + chr4_4:31441348-31441367 None:intergenic 35.0%
!!! GCACTTTTTCTTCTGTGATA+CGG - chr4_4:31441351-31441370 Msa0677520:intron 35.0%
!! ATTCTGTTGATAGTGAGACA+AGG - chr4_4:31441422-31441441 Msa0677520:intron 35.0%
!! TTCTGTTGATAGTGAGACAA+GGG - chr4_4:31441423-31441442 Msa0677520:intron 35.0%
GGAAATAAAGATGACCCAAT+CGG + chr4_4:31441552-31441571 None:intergenic 35.0%
ATTAGAGGAACTCTTCCATA+TGG + chr4_4:31441595-31441614 None:intergenic 35.0%
AAGATGAGAGTCCATAGATT+AGG - chr4_4:31441720-31441739 Msa0677520:intron 35.0%
AGTGACAATTTATTAGGCAG+AGG + chr4_4:31441862-31441881 None:intergenic 35.0%
! AGTTTTCCCAAAGAAAATGG+TGG + chr4_4:31442124-31442143 None:intergenic 35.0%
! TCACACGAACATTTTATACC+CGG - chr4_4:31442151-31442170 Msa0677520:intron 35.0%
!!! CAAACAGCAAAAGTTTTGGA+AGG + chr4_4:31442415-31442434 None:intergenic 35.0%
!!! CTTCCAAAACTTTTGCTGTT+TGG - chr4_4:31442413-31442432 Msa0677520:intron 35.0%
! ATTTTGTTCCATCAGTTTCG+TGG - chr4_4:31442686-31442705 Msa0677520:intron 35.0%
! TTTTGTTCCATCAGTTTCGT+GGG - chr4_4:31442687-31442706 Msa0677520:intron 35.0%
AAATATACCCACGAAACTGA+TGG + chr4_4:31442697-31442716 None:intergenic 35.0%
ACTGTGAAAAAAACAATGCG+AGG - chr4_4:31442770-31442789 Msa0677520:intron 35.0%
CAAACTTGCGATACAAATCT+TGG + chr4_4:31443030-31443049 None:intergenic 35.0%
GTGTTGAAATGTGTTTGATG+TGG - chr4_4:31443054-31443073 Msa0677520:intron 35.0%
TTCTACGTTTGTCCTATACA+CGG + chr4_4:31443098-31443117 None:intergenic 35.0%
!! TAGCAAAACCGTTGATTCTA+TGG - chr4_4:31443231-31443250 Msa0677520:intron 35.0%
GCTAACCCATTAATCTGAAA+GGG + chr4_4:31443274-31443293 None:intergenic 35.0%
TGCTAACCCATTAATCTGAA+AGG + chr4_4:31443275-31443294 None:intergenic 35.0%
!! TTTTAAGTGACATCAACCCT+GGG + chr4_4:31443306-31443325 None:intergenic 35.0%
CCATGGGAATATGATATATC+GGG + chr4_4:31443582-31443601 None:intergenic 35.0%
CCCATGGGAATATGATATAT+CGG + chr4_4:31443583-31443602 None:intergenic 35.0%
CCGATATATCATATTCCCAT+GGG - chr4_4:31443580-31443599 Msa0677520:intron 35.0%
! GAAATGAAGATGAAAGTGTG+TGG + chr4_4:31443645-31443664 None:intergenic 35.0%
TCAAGCATTCGTGTAGTAAT+GGG - chr4_4:31443714-31443733 Msa0677520:intron 35.0%
!!! CAACATTTTGAAACTAAGGG+GGG + chr4_4:31444025-31444044 None:intergenic 35.0%
!!! GCAACATTTTGAAACTAAGG+GGG + chr4_4:31444026-31444045 None:intergenic 35.0%
!!! CGCAACATTTTGAAACTAAG+GGG + chr4_4:31444027-31444046 None:intergenic 35.0%
!! CAATTTTAGCCCCATGTTTT+GGG + chr4_4:31444133-31444152 None:intergenic 35.0%
GTCATACAATCATGAGAACT+AGG + chr4_4:31444440-31444459 None:intergenic 35.0%
! ATAGTGAAACCAGCTTTTCT+TGG + chr4_4:31444756-31444775 None:intergenic 35.0%
TTCATGGTTGAAGCAACTTA+AGG - chr4_4:31444789-31444808 Msa0677520:five_prime_UTR 35.0%
CCTAAAAAAGAAGAGTTAGG+AGG + chr4_4:31444908-31444927 None:intergenic 35.0%
!!! CCTCCTAACTCTTCTTTTTT+AGG - chr4_4:31444905-31444924 Msa0677520:five_prime_UTR 35.0%
!! TTTGTTGTTGAGCACTTGTT+TGG - chr4_4:31444932-31444951 Msa0677520:five_prime_UTR 35.0%
TATTGGAGTATGTATGTAGG+AGG - chr4_4:31444988-31445007 Msa0677520:five_prime_UTR 35.0%
! ACTTGTTAGACTCCTTAGAA+AGG - chr4_4:31445058-31445077 Msa0677520:five_prime_UTR 35.0%
CTTGTTAGACTCCTTAGAAA+GGG - chr4_4:31445059-31445078 Msa0677520:five_prime_UTR 35.0%
TGTATAACCTCTTTGTGAAG+AGG - chr4_4:31445103-31445122 Msa0677520:five_prime_UTR 35.0%
AGGATTAAGTGTGTGTGTGA+CGG + chr4_4:31440278-31440297 None:intergenic 40.0%
CAATGAGGTCAATGCAATCT+AGG - chr4_4:31440921-31440940 Msa0677520:intron 40.0%
ACGGATTCCATAAACGGTTA+AGG + chr4_4:31441124-31441143 None:intergenic 40.0%
ATAGCGAGTGTGATAAGCTA+TGG - chr4_4:31441473-31441492 Msa0677520:intron 40.0%
CTATGGACATCATCAGAAGA+GGG - chr4_4:31441490-31441509 Msa0677520:intron 40.0%
TGGCATTTGAATGACCGATT+GGG - chr4_4:31441535-31441554 Msa0677520:intron 40.0%
CTACTGCTTTGCCTAATCTA+TGG + chr4_4:31441734-31441753 None:intergenic 40.0%
CATAGATTAGGCAAAGCAGT+AGG - chr4_4:31441732-31441751 Msa0677520:intron 40.0%
GCAGAGGAAAATGAGATTTC+TGG + chr4_4:31441846-31441865 None:intergenic 40.0%
TCCCTCCCTTTCAGATTAAT+GGG - chr4_4:31443266-31443285 Msa0677520:intron 40.0%
ACCCATTAATCTGAAAGGGA+GGG + chr4_4:31443270-31443289 None:intergenic 40.0%
AACCCATTAATCTGAAAGGG+AGG + chr4_4:31443271-31443290 None:intergenic 40.0%
!! CTTTTAAGTGACATCAACCC+TGG + chr4_4:31443307-31443326 None:intergenic 40.0%
TTGATCTATCACCAGCAAGT+TGG - chr4_4:31443329-31443348 Msa0677520:intron 40.0%
CCCGATATATCATATTCCCA+TGG - chr4_4:31443579-31443598 Msa0677520:intron 40.0%
! ATGAAAGTGTGTGGTAAGTG+AGG + chr4_4:31443636-31443655 None:intergenic 40.0%
GTCAAGCATTCGTGTAGTAA+TGG - chr4_4:31443713-31443732 Msa0677520:intron 40.0%
!! GCAATTTTAGCCCCATGTTT+TGG + chr4_4:31444134-31444153 None:intergenic 40.0%
AATCATGAGAACTAGGCCTT+TGG + chr4_4:31444433-31444452 None:intergenic 40.0%
ATGTAGGAGTGAATCGTGTA+TGG + chr4_4:31444474-31444493 None:intergenic 40.0%
GTGCAAAAAGCTAATAGGCA+TGG + chr4_4:31444510-31444529 None:intergenic 40.0%
TATGTAGTGTGGCAGATTCA+TGG - chr4_4:31444773-31444792 Msa0677520:intron 40.0%
CAAAGAACCTCTTCACAAAG+AGG + chr4_4:31445113-31445132 None:intergenic 40.0%
TGTGTGTAGAGAGGTAGATT+AGG - chr4_4:31445131-31445150 Msa0677520:five_prime_UTR 40.0%
! TTCGATGAATGGAGTGCCTA+TGG - chr4_4:31441194-31441213 Msa0677520:intron 45.0%
GCTATGGACATCATCAGAAG+AGG - chr4_4:31441489-31441508 Msa0677520:intron 45.0%
CATCTGAGCAAGATAGTCTC+TGG - chr4_4:31441515-31441534 Msa0677520:intron 45.0%
CTGGCATTTGAATGACCGAT+TGG - chr4_4:31441534-31441553 Msa0677520:intron 45.0%
GTCCCTCCCTTTCAGATTAA+TGG - chr4_4:31443265-31443284 Msa0677520:intron 45.0%
GGTTAGCAGAAAGATACCCA+GGG - chr4_4:31443287-31443306 Msa0677520:intron 45.0%
! TCTATCACCAGCAAGTTGGA+TGG - chr4_4:31443333-31443352 Msa0677520:intron 45.0%
TTGAAGAGACCCAAGAGAAG+AGG - chr4_4:31444638-31444657 Msa0677520:five_prime_UTR 45.0%
ACCTTCCTTCCTCTTCTCTT+GGG + chr4_4:31444650-31444669 None:intergenic 45.0%
GGCATCTCTTTGCAACCATT+TGG - chr4_4:31444673-31444692 Msa0677520:five_prime_UTR 45.0%
! TTGTGGGTCTCTGGAAAATG+TGG - chr4_4:31444724-31444743 Msa0677520:five_prime_UTR 45.0%
! GGTCTCTGGAAAATGTGGTA+GGG - chr4_4:31444729-31444748 Msa0677520:five_prime_UTR 45.0%
! GCTGGTTTCACTATGTAGTG+TGG - chr4_4:31444762-31444781 Msa0677520:intron 45.0%
GAGGTTCTTTGTGTGTAGAG+AGG - chr4_4:31445122-31445141 Msa0677520:five_prime_UTR 45.0%
GTGTAGAGAGGTAGATTAGG+AGG - chr4_4:31445134-31445153 Msa0677520:five_prime_UTR 45.0%
!!! TTTATTTTATCTTTTTTTTT+GGG - chr4_4:31441952-31441971 Msa0677520:intron 5.0%
!! TATAAATGAAATAATTATTA+CGG + chr4_4:31443802-31443821 None:intergenic 5.0%
!!! TTAAATTTTTTTTTTTTTGA+GGG + chr4_4:31443860-31443879 None:intergenic 5.0%
!!! ATTAAATTTTTTTTTTTTTG+AGG + chr4_4:31443861-31443880 None:intergenic 5.0%
!!! ATTTTTTCATTTTTTTATTA+GGG + chr4_4:31444059-31444078 None:intergenic 5.0%
!!! AATTTTTTCATTTTTTTATT+AGG + chr4_4:31444060-31444079 None:intergenic 5.0%
!! AAAAAATATTAAAATTATGA+AGG - chr4_4:31444550-31444569 Msa0677520:five_prime_UTR 5.0%
GTGTGACGGTGATTGAGGAA+AGG + chr4_4:31440264-31440283 None:intergenic 50.0%
TGTGTGTGTGACGGTGATTG+AGG + chr4_4:31440269-31440288 None:intergenic 50.0%
GATTGGAACTCCAACGCCAT+AGG + chr4_4:31441213-31441232 None:intergenic 50.0%
! GGGTTAGCAGAAAGATACCC+AGG - chr4_4:31443286-31443305 Msa0677520:intron 50.0%
! CAAGTTGGATGGCAGTTGCT+TGG - chr4_4:31443344-31443363 Msa0677520:intron 50.0%
AGAGACCCAAGAGAAGAGGA+AGG - chr4_4:31444642-31444661 Msa0677520:five_prime_UTR 50.0%
ACCCAAGAGAAGAGGAAGGA+AGG - chr4_4:31444646-31444665 Msa0677520:five_prime_UTR 50.0%
CACCTTCCTTCCTCTTCTCT+TGG + chr4_4:31444651-31444670 None:intergenic 50.0%
GAGAAGAGGAAGGAAGGTGA+AGG - chr4_4:31444652-31444671 Msa0677520:five_prime_UTR 50.0%
CAAGGGAATTTGTGGGTCTC+TGG - chr4_4:31444715-31444734 Msa0677520:five_prime_UTR 50.0%
! GGGTCTCTGGAAAATGTGGT+AGG - chr4_4:31444728-31444747 Msa0677520:five_prime_UTR 50.0%
TGGTAGGGACCAAGAAAAGC+TGG - chr4_4:31444744-31444763 Msa0677520:intron 50.0%
TACTTCATGGGCATTCGGCA+TGG - chr4_4:31444832-31444851 Msa0677520:five_prime_UTR 50.0%
! GAATGGAGTGCCTATGGCGT+TGG - chr4_4:31441200-31441219 Msa0677520:intron 55.0%
GCAACTGCCATCCAACTTGC+TGG + chr4_4:31443343-31443362 None:intergenic 55.0%
ACGCCACGTGTCCCAAAACA+TGG - chr4_4:31444119-31444138 Msa0677520:intron 55.0%
CGCCACGTGTCCCAAAACAT+GGG - chr4_4:31444120-31444139 Msa0677520:intron 55.0%
GCCACGTGTCCCAAAACATG+GGG - chr4_4:31444121-31444140 Msa0677520:intron 55.0%
GGGCATTCGGCATGGCTAAA+AGG - chr4_4:31444840-31444859 Msa0677520:five_prime_UTR 55.0%
!!! GCCCCATGTTTTGGGACACG+TGG + chr4_4:31444125-31444144 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 31440209 31445228 31440209 ID=Msa0677520;Name=Msa0677520
chr4_4 mRNA 31440209 31445228 31440209 ID=Msa0677520-mRNA-1;Parent=Msa0677520;Name=Msa0677520-mRNA-1;_AED=0.02;_eAED=0.02;_QI=688|1|1|1|0.83|0.71|7|370|307
chr4_4 exon 31440209 31440820 31440209 ID=Msa0677520-mRNA-1:exon:7811;Parent=Msa0677520-mRNA-1
chr4_4 exon 31441770 31441861 31441770 ID=Msa0677520-mRNA-1:exon:7810;Parent=Msa0677520-mRNA-1
chr4_4 exon 31442072 31442157 31442072 ID=Msa0677520-mRNA-1:exon:7809;Parent=Msa0677520-mRNA-1
chr4_4 exon 31443816 31444026 31443816 ID=Msa0677520-mRNA-1:exon:7808;Parent=Msa0677520-mRNA-1
chr4_4 exon 31444122 31444330 31444122 ID=Msa0677520-mRNA-1:exon:7807;Parent=Msa0677520-mRNA-1
chr4_4 exon 31444431 31444758 31444431 ID=Msa0677520-mRNA-1:exon:7806;Parent=Msa0677520-mRNA-1
chr4_4 exon 31444785 31445228 31444785 ID=Msa0677520-mRNA-1:exon:7805;Parent=Msa0677520-mRNA-1
chr4_4 five_prime_UTR 31444785 31445228 31444785 ID=Msa0677520-mRNA-1:five_prime_utr;Parent=Msa0677520-mRNA-1
chr4_4 five_prime_UTR 31444515 31444758 31444515 ID=Msa0677520-mRNA-1:five_prime_utr;Parent=Msa0677520-mRNA-1
chr4_4 CDS 31444431 31444514 31444431 ID=Msa0677520-mRNA-1:cds;Parent=Msa0677520-mRNA-1
chr4_4 CDS 31444122 31444330 31444122 ID=Msa0677520-mRNA-1:cds;Parent=Msa0677520-mRNA-1
chr4_4 CDS 31443816 31444026 31443816 ID=Msa0677520-mRNA-1:cds;Parent=Msa0677520-mRNA-1
chr4_4 CDS 31442072 31442157 31442072 ID=Msa0677520-mRNA-1:cds;Parent=Msa0677520-mRNA-1
chr4_4 CDS 31441770 31441861 31441770 ID=Msa0677520-mRNA-1:cds;Parent=Msa0677520-mRNA-1
chr4_4 CDS 31440579 31440820 31440579 ID=Msa0677520-mRNA-1:cds;Parent=Msa0677520-mRNA-1
chr4_4 three_prime_UTR 31440209 31440578 31440209 ID=Msa0677520-mRNA-1:three_prime_utr;Parent=Msa0677520-mRNA-1
Gene Sequence

>Msa0677520

ATGAGGTCAATGCAATCTAGGTCTAACCTTGATTGCTTTCTTCACCATACAACACCTATTGTACCATCTAAGTTTCTACAAAAGCACGAGATTAGAAACCTTAACCGTTTATGGAATCCGTGTGATAGAGAAACAGTTGAATATTTCACTCTGAGTGATCTTTGGAATTGTTTCGATGAATGGAGTGCCTATGGCGTTGGAGTTCCAATCAACTTTAAAAATGAGGAGACACTTGTCCAATACTATGTTCCTTACCTCTCTGCAATTCAAATATTTACAAGCAATAATTTCAGAGAAGAGATTGATTCTGTTGATAGTGAGACAAGGGATTCGTTTAGCGATTCTTACAGCGACGATAGCGAGTGTGATAAGCTATGGACATCATCAGAAGAGGGAGCATCTGAGCAAGATAGTCTCTGGCATTTGAATGACCGATTGGGTCATCTTTATTTCCAGTATTTTGAAAAATCAACTCCATATGGAAGAGTTCCTCTAATTGATAAGATTAATGGGTTAGCAGAAAGATACCCAGGGTTGATGTCACTTAAAAGTGTTGATCTATCACCAGCAAGTTGGATGGCAGTTGCTTGGTACCCGATATATCATATTCCCATGGGAAGAACAATTAAAGATCTTTCAACATGTTTCCTCACTTACCACACACTTTCATCTTCATTTCAAGATATGGACCTTGATAATGAGATTGAAGAGACCCAAGAGAAGAGGAAGGAAGGTGAAGGCATCTCTTTGCAACCATTTGGTTTAGCCACGTACAAGATGCAAGGGAATTTGTGGGTCTCTGGAAAATGTGGTAGGGACCAAGAAAAGCTGGTTTCACTATGTAGTGTGGCAGATTCATGGTTGAAGCAACTTAAGGTCCACCATCATGACTTTAATTACTTCATGGGCATTCGGCATGGCTAA
Protein sequence

>Msa0677520

MRSMQSRSNLDCFLHHTTPIVPSKFLQKHEIRNLNRLWNPCDRETVEYFTLSDLWNCFDEWSAYGVGVPINFKNEETLVQYYVPYLSAIQIFTSNNFREEIDSVDSETRDSFSDSYSDDSECDKLWTSSEEGASEQDSLWHLNDRLGHLYFQYFEKSTPYGRVPLIDKINGLAERYPGLMSLKSVDLSPASWMAVAWYPIYHIPMGRTIKDLSTCFLTYHTLSSSFQDMDLDNEIEETQEKRKEGEGISLQPFGLATYKMQGNLWVSGKCGRDQEKLVSLCSVADSWLKQLKVHHHDFNYFMGIRHG*