Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543170 | KEH17554.1 | 97.585 | 414 | 10 | 0 | 1 | 414 | 1 | 414 | 0.0 | 813 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543170 | sp|Q9M0Y3|ENT3_ARATH | 70.244 | 410 | 121 | 1 | 3 | 412 | 6 | 414 | 0.0 | 600 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543170 | A0A072TIZ8 | 97.585 | 414 | 10 | 0 | 1 | 414 | 1 | 414 | 0.0 | 813 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0543170 | Msa0677910 | 0.831801 | 1.358804e-55 | -8.615850e-47 |
| Msa0543170 | Msa1398550 | 0.824482 | 7.879289e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543170 | MtrunA17_Chr4g0022871 | 97.585 | 414 | 10 | 0 | 1 | 414 | 1 | 414 | 0.0 | 813 |
| Msa0543170 | MtrunA17_Chr2g0323381 | 82.367 | 414 | 73 | 0 | 1 | 414 | 1 | 414 | 0.0 | 681 |
| Msa0543170 | MtrunA17_Chr4g0022861 | 81.156 | 398 | 75 | 0 | 17 | 414 | 1 | 398 | 0.0 | 666 |
| Msa0543170 | MtrunA17_Chr2g0280971 | 68.447 | 412 | 128 | 2 | 3 | 412 | 30 | 441 | 0.0 | 575 |
| Msa0543170 | MtrunA17_Chr2g0280991 | 69.363 | 408 | 123 | 1 | 7 | 412 | 14 | 421 | 0.0 | 570 |
| Msa0543170 | MtrunA17_Chr4g0022801 | 74.747 | 396 | 72 | 1 | 47 | 414 | 10 | 405 | 0.0 | 559 |
| Msa0543170 | MtrunA17_Chr8g0335821 | 57.851 | 363 | 151 | 1 | 52 | 412 | 2 | 364 | 5.51e-136 | 394 |
| Msa0543170 | MtrunA17_Chr1g0184961 | 77.165 | 254 | 46 | 2 | 47 | 293 | 104 | 352 | 4.71e-133 | 386 |
| Msa0543170 | MtrunA17_Chr4g0020331 | 32.274 | 409 | 249 | 8 | 11 | 410 | 26 | 415 | 2.03e-58 | 196 |
| Msa0543170 | MtrunA17_Chr3g0103741 | 30.488 | 410 | 255 | 9 | 11 | 410 | 34 | 423 | 5.03e-49 | 172 |
| Msa0543170 | MtrunA17_Chr2g0280961 | 57.047 | 149 | 60 | 2 | 224 | 368 | 83 | 231 | 3.72e-45 | 156 |
| Msa0543170 | MtrunA17_Chr2g0280961 | 55.056 | 89 | 40 | 0 | 52 | 140 | 2 | 90 | 2.37e-24 | 100 |
| Msa0543170 | MtrunA17_Chr4g0063911 | 27.423 | 423 | 264 | 8 | 1 | 410 | 6 | 398 | 1.55e-42 | 154 |
| Msa0543170 | MtrunA17_Chr1g0184971 | 79.365 | 63 | 13 | 0 | 296 | 358 | 2 | 64 | 5.00e-29 | 108 |
| Msa0543170 | MtrunA17_Chr4g0022811 | 76.744 | 43 | 10 | 0 | 4 | 46 | 2 | 44 | 7.18e-18 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543170 | AT4G05120.1 | 70.244 | 410 | 121 | 1 | 3 | 412 | 6 | 414 | 0.0 | 600 |
| Msa0543170 | AT4G05120.2 | 70.244 | 410 | 121 | 1 | 3 | 412 | 6 | 414 | 0.0 | 600 |
| Msa0543170 | AT4G05110.3 | 65.610 | 410 | 140 | 1 | 3 | 412 | 6 | 414 | 0.0 | 561 |
| Msa0543170 | AT4G05110.1 | 65.610 | 410 | 140 | 1 | 3 | 412 | 6 | 414 | 0.0 | 561 |
| Msa0543170 | AT4G05110.2 | 65.366 | 410 | 141 | 1 | 3 | 412 | 6 | 414 | 0.0 | 560 |
| Msa0543170 | AT4G05140.1 | 64.146 | 410 | 147 | 0 | 3 | 412 | 6 | 415 | 0.0 | 554 |
| Msa0543170 | AT3G09990.1 | 63.951 | 405 | 145 | 1 | 11 | 414 | 13 | 417 | 0.0 | 543 |
| Msa0543170 | AT4G05130.1 | 62.136 | 412 | 155 | 1 | 3 | 414 | 6 | 416 | 0.0 | 542 |
| Msa0543170 | AT1G61630.1 | 61.111 | 414 | 152 | 2 | 4 | 412 | 5 | 414 | 0.0 | 510 |
| Msa0543170 | AT1G70330.1 | 32.067 | 421 | 253 | 9 | 2 | 410 | 51 | 450 | 3.44e-56 | 192 |
| Msa0543170 | AT1G02630.1 | 28.928 | 401 | 248 | 7 | 16 | 410 | 20 | 389 | 3.69e-47 | 166 |
| Msa0543170 | AT1G02630.2 | 29.798 | 198 | 137 | 2 | 16 | 212 | 20 | 216 | 4.11e-24 | 102 |
Find 93 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCACCTTATAGCCTTTC+GGG | 0.166232 | 4_1:-28810157 | None:intergenic |
| ACAAGGAAACGGATTCTATT+TGG | 0.191611 | 4_1:+28808061 | Msa0543170:CDS |
| AGGAAATAAGCAATTGTTAT+TGG | 0.204429 | 4_1:+28809216 | Msa0543170:CDS |
| CTTGATTGGTTATGGTTAAT+AGG | 0.205341 | 4_1:+28810341 | Msa0543170:CDS |
| TACTTCACAATTGGTAATTT+AGG | 0.225152 | 4_1:-28808987 | None:intergenic |
| TTACTATGTTTATTTATTTC+CGG | 0.229116 | 4_1:+28807600 | Msa0543170:CDS |
| CTTCTTGGAGGTATCTTTGC+AGG | 0.232600 | 4_1:+28810311 | Msa0543170:CDS |
| TTCTTCACCTTATAGCCTTT+CGG | 0.245719 | 4_1:-28810158 | None:intergenic |
| GATAATGTTGACATCTTTCT+TGG | 0.252333 | 4_1:+28810091 | Msa0543170:CDS |
| ATCTTGGTATTGTTTCTTCT+TGG | 0.254429 | 4_1:+28810296 | Msa0543170:CDS |
| GTCTGTTGGCTTCTTGGAAA+TGG | 0.258111 | 4_1:+28807538 | Msa0543170:CDS |
| ATGCTGACCTGAACAAATTC+TGG | 0.275263 | 4_1:-28808350 | None:intergenic |
| AGCAATATTTGAAAATTCTA+AGG | 0.295643 | 4_1:+28808685 | Msa0543170:CDS |
| CTCAAATTGTCTTAATTCTT+CGG | 0.301282 | 4_1:-28809188 | None:intergenic |
| ATAGTGGTCTGTTGGCTTCT+TGG | 0.306364 | 4_1:+28807532 | Msa0543170:CDS |
| CTTGGCGGTGCTGCAGCATC+AGG | 0.325226 | 4_1:+28808629 | Msa0543170:CDS |
| TGCATAGTTAGTGGTGCATT+TGG | 0.338224 | 4_1:+28808272 | Msa0543170:CDS |
| GGGTAACACTTGATTGGTTA+TGG | 0.340185 | 4_1:+28810333 | Msa0543170:CDS |
| TTCTGCCCCGAAAGGCTATA+AGG | 0.352392 | 4_1:+28810151 | Msa0543170:CDS |
| TTGGTATTGTTTCTTCTTGG+AGG | 0.389863 | 4_1:+28810299 | Msa0543170:CDS |
| TCTGTTGGCTTCTTGGAAAT+GGG | 0.394950 | 4_1:+28807539 | Msa0543170:CDS |
| ATAATGTTGACATCTTTCTT+GGG | 0.400944 | 4_1:+28810092 | Msa0543170:CDS |
| TCAGCTGACCTTGCTGCAGC+TGG | 0.400973 | 4_1:+28809050 | Msa0543170:CDS |
| AAATGCATTGGGAAATATCT+TGG | 0.414446 | 4_1:+28810280 | Msa0543170:CDS |
| ACTGATCAAAATCTTGAAGT+TGG | 0.417735 | 4_1:+28809974 | Msa0543170:CDS |
| TTGCAGGGGTAACACTTGAT+TGG | 0.420620 | 4_1:+28810327 | Msa0543170:CDS |
| CATGAATCCAGAATTTGTTC+AGG | 0.422496 | 4_1:+28808343 | Msa0543170:CDS |
| GAACGGTAGTACTTCACAAT+TGG | 0.426412 | 4_1:-28808996 | None:intergenic |
| TTATTGTTGTAGTCTTTCCT+TGG | 0.427988 | 4_1:+28808611 | Msa0543170:intron |
| GTGCTCTAACATCGGCTTTG+AGG | 0.429741 | 4_1:+28808651 | Msa0543170:CDS |
| TACAATTAAAACAGCCAAAA+CGG | 0.430063 | 4_1:-28808104 | None:intergenic |
| GGAGGGATTGGAGCATTCAT+TGG | 0.431362 | 4_1:+28808245 | Msa0543170:CDS |
| AAGGTCAGCTGAAACAGTTT+TGG | 0.431717 | 4_1:-28809039 | None:intergenic |
| TATAATGTGTGGGATCTTAT+CGG | 0.438703 | 4_1:+28809939 | Msa0543170:CDS |
| CATGCACAAGGAGGAATGAT+TGG | 0.442301 | 4_1:+28808308 | Msa0543170:CDS |
| AAGCTCAAACAAGGTTGATA+AGG | 0.443767 | 4_1:-28808934 | None:intergenic |
| TTCTTGGAGGTATCTTTGCA+GGG | 0.445209 | 4_1:+28810312 | Msa0543170:CDS |
| TAGTTGGATTTAGCAACATC+TGG | 0.457762 | 4_1:+28808218 | Msa0543170:intron |
| ATTCTGGATTCATGTATGAT+AGG | 0.459054 | 4_1:-28808334 | None:intergenic |
| ATTGGTATATGCATAGTTAG+TGG | 0.468620 | 4_1:+28808263 | Msa0543170:CDS |
| TTGTTGTAGTCTTTCCTTGG+CGG | 0.468717 | 4_1:+28808614 | Msa0543170:intron |
| ACATCTGGTAAAGGAGGGAT+TGG | 0.477579 | 4_1:+28808233 | Msa0543170:CDS |
| CTAACATTGTCTATATTCCC+TGG | 0.479334 | 4_1:+28809280 | Msa0543170:CDS |
| GGGAAAATATACTGCAATAG+TGG | 0.484444 | 4_1:+28807516 | Msa0543170:intron |
| TGGTTATGGTTAATAGGTAA+AGG | 0.488739 | 4_1:+28810347 | Msa0543170:CDS |
| GATACCGGAACACACAGTTT+AGG | 0.497923 | 4_1:+28809316 | Msa0543170:CDS |
| GTACTTCTCGAAATGAGGTC+TGG | 0.497951 | 4_1:-28809076 | None:intergenic |
| AGCAATTCTTACTTACTATG+AGG | 0.505159 | 4_1:+28808027 | Msa0543170:CDS |
| GGACCTGAACAAAATGCATT+GGG | 0.506071 | 4_1:+28810269 | Msa0543170:CDS |
| GCTAGTGTTCCAACTGCAAA+TGG | 0.506628 | 4_1:-28808007 | None:intergenic |
| GGGACCTGAACAAAATGCAT+TGG | 0.516104 | 4_1:+28810268 | Msa0543170:intron |
| TGCAGAAATATCATCCCTCT+AGG | 0.522851 | 4_1:+28807963 | Msa0543170:intron |
| TGTGCCTAAACTGTGTGTTC+CGG | 0.527489 | 4_1:-28809320 | None:intergenic |
| GATTTAGCAACATCTGGTAA+AGG | 0.531613 | 4_1:+28808224 | Msa0543170:CDS |
| AAACCGTACTTCTCGAAATG+AGG | 0.538163 | 4_1:-28809081 | None:intergenic |
| CAAAGTATGGTACTCAAGGT+TGG | 0.542078 | 4_1:+28810066 | Msa0543170:CDS |
| ACAGACAGCGAGGTAGCCAT+TGG | 0.547272 | 4_1:-28810120 | None:intergenic |
| ATACTGCAATAGTGGTCTGT+TGG | 0.551193 | 4_1:+28807524 | Msa0543170:CDS |
| CTGATGCTGCAGCACCGCCA+AGG | 0.552472 | 4_1:-28808628 | None:intergenic |
| TGAGCCTCCACCACGTATTG+AGG | 0.554558 | 4_1:+28807367 | Msa0543170:CDS |
| TATGGTTAATAGGTAAAGGA+TGG | 0.554780 | 4_1:+28810351 | Msa0543170:CDS |
| GTATATCAGCCATTTGCAGT+TGG | 0.555669 | 4_1:+28807998 | Msa0543170:CDS |
| AAATTGTCTTAATTCTTCGG+TGG | 0.562541 | 4_1:-28809185 | None:intergenic |
| TCTTTCTTGGGGATATCCAA+TGG | 0.562937 | 4_1:+28810104 | Msa0543170:CDS |
| TTTGCAGTGAAATAAAATGC+TGG | 0.563621 | 4_1:-28810047 | None:intergenic |
| TAATGTTGACATCTTTCTTG+GGG | 0.567874 | 4_1:+28810093 | Msa0543170:CDS |
| ACTGCAAAGTATGGTACTCA+AGG | 0.567878 | 4_1:+28810062 | Msa0543170:CDS |
| TTAAGACAATTTGAGCGCAA+AGG | 0.573253 | 4_1:+28809196 | Msa0543170:CDS |
| AGCATCAGGTGCTCTAACAT+CGG | 0.577110 | 4_1:+28808643 | Msa0543170:CDS |
| ATCACCTCAATACGTGGTGG+AGG | 0.577633 | 4_1:-28807371 | None:intergenic |
| TTAGCAACATCTGGTAAAGG+AGG | 0.580672 | 4_1:+28808227 | Msa0543170:CDS |
| AATTGCCATGTATAATGTGT+GGG | 0.581184 | 4_1:+28809929 | Msa0543170:CDS |
| CGTTCAAAAGCAGCATCCGA+AGG | 0.583519 | 4_1:+28809014 | Msa0543170:CDS |
| TACAAGAGTAAGCACCCTAG+AGG | 0.583761 | 4_1:-28807978 | None:intergenic |
| ATATTTGAAAATTCTAAGGA+CGG | 0.599191 | 4_1:+28808689 | Msa0543170:CDS |
| AAGATCCCACACATTATACA+TGG | 0.604823 | 4_1:-28809934 | None:intergenic |
| GTTCTCACTTCTGCCCCGAA+AGG | 0.606657 | 4_1:+28810143 | Msa0543170:CDS |
| TCTTGGAGGTATCTTTGCAG+GGG | 0.607411 | 4_1:+28810313 | Msa0543170:CDS |
| CTTCACCTTATAGCCTTTCG+GGG | 0.611942 | 4_1:-28810156 | None:intergenic |
| TAGCAACATCTGGTAAAGGA+GGG | 0.612233 | 4_1:+28808228 | Msa0543170:CDS |
| AACACAAAGAAGCTCAAACA+AGG | 0.615784 | 4_1:-28808943 | None:intergenic |
| TTAGCAGATGCTCATGCACA+AGG | 0.620251 | 4_1:+28808296 | Msa0543170:CDS |
| TAATTGCCATGTATAATGTG+TGG | 0.620934 | 4_1:+28809928 | Msa0543170:CDS |
| GCAGAAATATCATCCCTCTA+GGG | 0.623345 | 4_1:+28807964 | Msa0543170:intron |
| GTTCAAAAGCAGCATCCGAA+GGG | 0.625870 | 4_1:+28809015 | Msa0543170:CDS |
| ACAAGAGTAAGCACCCTAGA+GGG | 0.631895 | 4_1:-28807977 | None:intergenic |
| TCTAAGGACGGACTTCGCAA+AGG | 0.638434 | 4_1:+28808701 | Msa0543170:CDS |
| TCTGGATTCCAGCTGCAGCA+AGG | 0.649624 | 4_1:-28809058 | None:intergenic |
| GAACACACAGTTTAGGCACA+TGG | 0.670795 | 4_1:+28809323 | Msa0543170:CDS |
| TATATCACCTCAATACGTGG+TGG | 0.675337 | 4_1:-28807374 | None:intergenic |
| ATATATATCACCTCAATACG+TGG | 0.678311 | 4_1:-28807377 | None:intergenic |
| AAGTGAGAACACAGACAGCG+AGG | 0.688797 | 4_1:-28810130 | None:intergenic |
| GCAGATGCTCATGCACAAGG+AGG | 0.707799 | 4_1:+28808299 | Msa0543170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAGCATATATAATTT+CGG | - | chr4_1:28807433-28807452 | None:intergenic | 10.0% |
| !!! | GCTTTTTTTTTTTTTTTTGA+AGG | + | chr4_1:28807444-28807463 | Msa0543170:intron | 15.0% |
| !! | TTACTATGTTTATTTATTTC+CGG | + | chr4_1:28807600-28807619 | Msa0543170:CDS | 15.0% |
| !!! | AAATTGATTTCTTTTAGTAT+CGG | + | chr4_1:28808825-28808844 | Msa0543170:intron | 15.0% |
| !! | TCGTTAGTTATTATTTATTT+CGG | - | chr4_1:28809550-28809569 | None:intergenic | 15.0% |
| !!! | AATGATATTTTAAGAAGTAA+TGG | + | chr4_1:28809786-28809805 | Msa0543170:intron | 15.0% |
| !!! | TTAAATTATTTTGCATTTGC+AGG | + | chr4_1:28807495-28807514 | Msa0543170:intron | 20.0% |
| !!! | TAAATTATTTTGCATTTGCA+GGG | + | chr4_1:28807496-28807515 | Msa0543170:intron | 20.0% |
| !! | CAAAATAAATGATGTGTAAT+AGG | - | chr4_1:28807721-28807740 | None:intergenic | 20.0% |
| !!! | ACATCATTTATTTTGTAATC+TGG | + | chr4_1:28807726-28807745 | Msa0543170:intron | 20.0% |
| !! | TATAACAGATATAACAAAAG+TGG | - | chr4_1:28807816-28807835 | None:intergenic | 20.0% |
| !! | AAGTTAACAAAACTATTAAC+AGG | - | chr4_1:28808133-28808152 | None:intergenic | 20.0% |
| !! | AGCAATATTTGAAAATTCTA+AGG | + | chr4_1:28808685-28808704 | Msa0543170:CDS | 20.0% |
| !!! | ATATTTGAAAATTCTAAGGA+CGG | + | chr4_1:28808689-28808708 | Msa0543170:CDS | 20.0% |
| !! | AATTGATATTTGAATGTGTT+GGG | - | chr4_1:28809663-28809682 | None:intergenic | 20.0% |
| !! | AAATTGATATTTGAATGTGT+TGG | - | chr4_1:28809664-28809683 | None:intergenic | 20.0% |
| !! | TTGATATTTCCATTTATTAC+AGG | + | chr4_1:28809892-28809911 | Msa0543170:intron | 20.0% |
| !! | AACACACAAGTATTAATTAA+TGG | - | chr4_1:28810236-28810255 | None:intergenic | 20.0% |
| ! | CAAAAATCAATACAAGGAAA+CGG | + | chr4_1:28808050-28808069 | Msa0543170:CDS | 25.0% |
| ! | TACAATTAAAACAGCCAAAA+CGG | - | chr4_1:28808107-28808126 | None:intergenic | 25.0% |
| !! | AATCTAAATGCACATTTTGA+AGG | - | chr4_1:28808161-28808180 | None:intergenic | 25.0% |
| ! | ACAATGCTAACTTTGATATT+CGG | + | chr4_1:28808410-28808429 | Msa0543170:intron | 25.0% |
| ! | TTATATAACGATTGCAATTG+CGG | + | chr4_1:28808499-28808518 | Msa0543170:intron | 25.0% |
| !! | ACATATGCAACTCTTTTTAA+AGG | + | chr4_1:28808586-28808605 | Msa0543170:intron | 25.0% |
| ! | TGGATATCTTTATGAATTGT+AGG | - | chr4_1:28808853-28808872 | None:intergenic | 25.0% |
| !! | TACTTCACAATTGGTAATTT+AGG | - | chr4_1:28808990-28809009 | None:intergenic | 25.0% |
| !! | CTTTTCTTTTCAATTTCTCA+CGG | + | chr4_1:28809104-28809123 | Msa0543170:intron | 25.0% |
| !!! | GACTAATTTGTGTTTTTTTC+AGG | + | chr4_1:28809162-28809181 | Msa0543170:intron | 25.0% |
| ! | CTCAAATTGTCTTAATTCTT+CGG | - | chr4_1:28809191-28809210 | None:intergenic | 25.0% |
| ! | AGGAAATAAGCAATTGTTAT+TGG | + | chr4_1:28809216-28809235 | Msa0543170:CDS | 25.0% |
| ! | TATCTTCTGATAAAAATCCA+GGG | - | chr4_1:28809300-28809319 | None:intergenic | 25.0% |
| ! | GATTAACTAATACACATTTG+AGG | + | chr4_1:28809523-28809542 | Msa0543170:intron | 25.0% |
| ! | GTATCTTTCACTATTCAATT+TGG | - | chr4_1:28809589-28809608 | None:intergenic | 25.0% |
| ! | AATAGTGAAAGATACATTTG+AGG | + | chr4_1:28809594-28809613 | Msa0543170:intron | 25.0% |
| ! | ATAGTGAAAGATACATTTGA+GGG | + | chr4_1:28809595-28809614 | Msa0543170:intron | 25.0% |
| !!! | GTTTTAAACTCAACAGTTTA+TGG | - | chr4_1:28809698-28809717 | None:intergenic | 25.0% |
| ! | ATATCATTCCAATATCTATC+TGG | - | chr4_1:28809774-28809793 | None:intergenic | 25.0% |
| !!! | TTTTATTTCACTGCAAAGTA+TGG | + | chr4_1:28810053-28810072 | Msa0543170:CDS | 25.0% |
| ! | ATAATGTTGACATCTTTCTT+GGG | + | chr4_1:28810092-28810111 | Msa0543170:CDS | 25.0% |
| !!! | GAAGTATTCTAGTTTCTTAA+AGG | - | chr4_1:28810185-28810204 | None:intergenic | 25.0% |
| !!! | TTGTGTGTTTTTACTTATGT+AGG | + | chr4_1:28810247-28810266 | Msa0543170:intron | 25.0% |
| !!! | TGTGTGTTTTTACTTATGTA+GGG | + | chr4_1:28810248-28810267 | Msa0543170:intron | 25.0% |
| ATATATATCACCTCAATACG+TGG | - | chr4_1:28807380-28807399 | None:intergenic | 30.0% | |
| TCAGAAAGTAGATACATTAC+CGG | - | chr4_1:28807622-28807641 | None:intergenic | 30.0% | |
| TAACCAGAGTGAATAGTTAA+CGG | - | chr4_1:28807666-28807685 | None:intergenic | 30.0% | |
| ! | TATTTCTGCACAAATAGGAA+AGG | - | chr4_1:28807953-28807972 | None:intergenic | 30.0% |
| ! | GATGATATTTCTGCACAAAT+AGG | - | chr4_1:28807958-28807977 | None:intergenic | 30.0% |
| AGCAATTCTTACTTACTATG+AGG | + | chr4_1:28808027-28808046 | Msa0543170:CDS | 30.0% | |
| ATGAGGCAAAAATCAATACA+AGG | + | chr4_1:28808044-28808063 | Msa0543170:CDS | 30.0% | |
| !! | TGGATACACACTATTTTTCT+TGG | + | chr4_1:28808081-28808100 | Msa0543170:CDS | 30.0% |
| ATTGGTATATGCATAGTTAG+TGG | + | chr4_1:28808263-28808282 | Msa0543170:CDS | 30.0% | |
| ATTCTGGATTCATGTATGAT+AGG | - | chr4_1:28808337-28808356 | None:intergenic | 30.0% | |
| CAATGCTAACTTTGATATTC+GGG | + | chr4_1:28808411-28808430 | Msa0543170:intron | 30.0% | |
| !! | GCATAAAATTGTTTCTGCAT+GGG | - | chr4_1:28808456-28808475 | None:intergenic | 30.0% |
| !!! | TATAAAAGTTTTAGACGCCT+CGG | - | chr4_1:28808484-28808503 | None:intergenic | 30.0% |
| AAAAGAGTTGCATATGTTGA+AGG | - | chr4_1:28808583-28808602 | None:intergenic | 30.0% | |
| TTATTGTTGTAGTCTTTCCT+TGG | + | chr4_1:28808611-28808630 | Msa0543170:intron | 30.0% | |
| CAAACTGAATCTCAATAGTA+AGG | - | chr4_1:28809135-28809154 | None:intergenic | 30.0% | |
| AAATTGTCTTAATTCTTCGG+TGG | - | chr4_1:28809188-28809207 | None:intergenic | 30.0% | |
| GTATCTTCTGATAAAAATCC+AGG | - | chr4_1:28809301-28809320 | None:intergenic | 30.0% | |
| ! | GGATTTTTATCAGAAGATAC+CGG | + | chr4_1:28809301-28809320 | Msa0543170:CDS | 30.0% |
| CGAAAATGAAAAACATCTCT+CGG | + | chr4_1:28809466-28809485 | Msa0543170:intron | 30.0% | |
| ATTTGAATGTGTTGGGTATT+AGG | - | chr4_1:28809656-28809675 | None:intergenic | 30.0% | |
| ATATCTCACCAGATAGATAT+TGG | + | chr4_1:28809763-28809782 | Msa0543170:intron | 30.0% | |
| ! | AAGAGCATACCTGTAATAAA+TGG | - | chr4_1:28809904-28809923 | None:intergenic | 30.0% |
| TAATTGCCATGTATAATGTG+TGG | + | chr4_1:28809928-28809947 | Msa0543170:CDS | 30.0% | |
| AATTGCCATGTATAATGTGT+GGG | + | chr4_1:28809929-28809948 | Msa0543170:CDS | 30.0% | |
| TATAATGTGTGGGATCTTAT+CGG | + | chr4_1:28809939-28809958 | Msa0543170:CDS | 30.0% | |
| !! | AACTTCAAGATTTTGATCAG+TGG | - | chr4_1:28809975-28809994 | None:intergenic | 30.0% |
| ACTGATCAAAATCTTGAAGT+TGG | + | chr4_1:28809974-28809993 | Msa0543170:CDS | 30.0% | |
| TTTGCAGTGAAATAAAATGC+TGG | - | chr4_1:28810050-28810069 | None:intergenic | 30.0% | |
| GATAATGTTGACATCTTTCT+TGG | + | chr4_1:28810091-28810110 | Msa0543170:CDS | 30.0% | |
| TAATGTTGACATCTTTCTTG+GGG | + | chr4_1:28810093-28810112 | Msa0543170:CDS | 30.0% | |
| AAGAAACTAGAATACTTCAG+AGG | + | chr4_1:28810187-28810206 | Msa0543170:intron | 30.0% | |
| AAATGCATTGGGAAATATCT+TGG | + | chr4_1:28810280-28810299 | Msa0543170:CDS | 30.0% | |
| ! | ATCTTGGTATTGTTTCTTCT+TGG | + | chr4_1:28810296-28810315 | Msa0543170:CDS | 30.0% |
| ! | CTTGATTGGTTATGGTTAAT+AGG | + | chr4_1:28810341-28810360 | Msa0543170:CDS | 30.0% |
| TGGTTATGGTTAATAGGTAA+AGG | + | chr4_1:28810347-28810366 | Msa0543170:CDS | 30.0% | |
| TATGGTTAATAGGTAAAGGA+TGG | + | chr4_1:28810351-28810370 | Msa0543170:CDS | 30.0% | |
| GGGAAAATATACTGCAATAG+TGG | + | chr4_1:28807516-28807535 | Msa0543170:intron | 35.0% | |
| TATCCGTTAACTATTCACTC+TGG | + | chr4_1:28807660-28807679 | Msa0543170:intron | 35.0% | |
| !!! | TTGTAATCTGGTTTTATGCC+CGG | + | chr4_1:28807738-28807757 | Msa0543170:intron | 35.0% |
| CTGATGTGTAGATGTTTGTT+AGG | + | chr4_1:28807772-28807791 | Msa0543170:intron | 35.0% | |
| ! | ACAAGGAAACGGATTCTATT+TGG | + | chr4_1:28808061-28808080 | Msa0543170:CDS | 35.0% |
| !! | ACTATTTTTCTTGGCCGTTT+TGG | + | chr4_1:28808090-28808109 | Msa0543170:CDS | 35.0% |
| GATGTTGCTAAATCCAACTA+CGG | - | chr4_1:28808218-28808237 | None:intergenic | 35.0% | |
| TAGTTGGATTTAGCAACATC+TGG | + | chr4_1:28808218-28808237 | Msa0543170:intron | 35.0% | |
| GATTTAGCAACATCTGGTAA+AGG | + | chr4_1:28808224-28808243 | Msa0543170:CDS | 35.0% | |
| ! | CATGAATCCAGAATTTGTTC+AGG | + | chr4_1:28808343-28808362 | Msa0543170:CDS | 35.0% |
| !! | GGCATAAAATTGTTTCTGCA+TGG | - | chr4_1:28808457-28808476 | None:intergenic | 35.0% |
| ATCCATGATCATGATTCATG+TGG | + | chr4_1:28808868-28808887 | Msa0543170:intron | 35.0% | |
| TACCACATGAATCATGATCA+TGG | - | chr4_1:28808873-28808892 | None:intergenic | 35.0% | |
| !! | AAGCTCAAACAAGGTTGATA+AGG | - | chr4_1:28808937-28808956 | None:intergenic | 35.0% |
| AACACAAAGAAGCTCAAACA+AGG | - | chr4_1:28808946-28808965 | None:intergenic | 35.0% | |
| TTAAGACAATTTGAGCGCAA+AGG | + | chr4_1:28809196-28809215 | Msa0543170:CDS | 35.0% | |
| CTAACATTGTCTATATTCCC+TGG | + | chr4_1:28809280-28809299 | Msa0543170:CDS | 35.0% | |
| GTCATAAACTTCGACTAAAC+TGG | + | chr4_1:28809393-28809412 | Msa0543170:intron | 35.0% | |
| ! | TTTTGATCCCTAAATGTGTG+CGG | + | chr4_1:28809418-28809437 | Msa0543170:intron | 35.0% |
| TCTGCTCAAAACAACAAAAG+TGG | + | chr4_1:28809828-28809847 | Msa0543170:intron | 35.0% | |
| CAAAACAACAAAAGTGGCTA+AGG | + | chr4_1:28809834-28809853 | Msa0543170:intron | 35.0% | |
| AAGATCCCACACATTATACA+TGG | - | chr4_1:28809937-28809956 | None:intergenic | 35.0% | |
| TTCTTCACCTTATAGCCTTT+CGG | - | chr4_1:28810161-28810180 | None:intergenic | 35.0% | |
| ! | TTTCCCAATGCATTTTGTTC+AGG | - | chr4_1:28810275-28810294 | None:intergenic | 35.0% |
| ! | TTGGTATTGTTTCTTCTTGG+AGG | + | chr4_1:28810299-28810318 | Msa0543170:CDS | 35.0% |
| TATATCACCTCAATACGTGG+TGG | - | chr4_1:28807377-28807396 | None:intergenic | 40.0% | |
| ATACTGCAATAGTGGTCTGT+TGG | + | chr4_1:28807524-28807543 | Msa0543170:CDS | 40.0% | |
| !! | TCTGTTGGCTTCTTGGAAAT+GGG | + | chr4_1:28807539-28807558 | Msa0543170:CDS | 40.0% |
| ! | GAAATGGGTGTCTTTTCTCT+TGG | + | chr4_1:28807554-28807573 | Msa0543170:CDS | 40.0% |
| ! | TGAAAGTACAAAGAGCTGAG+AGG | - | chr4_1:28807885-28807904 | None:intergenic | 40.0% |
| TGCAGAAATATCATCCCTCT+AGG | + | chr4_1:28807963-28807982 | Msa0543170:intron | 40.0% | |
| GCAGAAATATCATCCCTCTA+GGG | + | chr4_1:28807964-28807983 | Msa0543170:intron | 40.0% | |
| GTATATCAGCCATTTGCAGT+TGG | + | chr4_1:28807998-28808017 | Msa0543170:CDS | 40.0% | |
| TTAGCAACATCTGGTAAAGG+AGG | + | chr4_1:28808227-28808246 | Msa0543170:CDS | 40.0% | |
| TAGCAACATCTGGTAAAGGA+GGG | + | chr4_1:28808228-28808247 | Msa0543170:CDS | 40.0% | |
| TGCATAGTTAGTGGTGCATT+TGG | + | chr4_1:28808272-28808291 | Msa0543170:CDS | 40.0% | |
| ATGCTGACCTGAACAAATTC+TGG | - | chr4_1:28808353-28808372 | None:intergenic | 40.0% | |
| ! | ACAATTTTATGCCTTTGCCG+AGG | + | chr4_1:28808464-28808483 | Msa0543170:intron | 40.0% |
| TTGTTGTAGTCTTTCCTTGG+CGG | + | chr4_1:28808614-28808633 | Msa0543170:intron | 40.0% | |
| AAGAACTGCATGAATCAGAG+AGG | - | chr4_1:28808907-28808926 | None:intergenic | 40.0% | |
| GAACGGTAGTACTTCACAAT+TGG | - | chr4_1:28808999-28809018 | None:intergenic | 40.0% | |
| !!! | TGAAACAGTTTTGGACCCTT+CGG | - | chr4_1:28809033-28809052 | None:intergenic | 40.0% |
| ! | AAGGTCAGCTGAAACAGTTT+TGG | - | chr4_1:28809042-28809061 | None:intergenic | 40.0% |
| AGACCTCATTTCGAGAAGTA+CGG | + | chr4_1:28809078-28809097 | Msa0543170:intron | 40.0% | |
| AAACCGTACTTCTCGAAATG+AGG | - | chr4_1:28809084-28809103 | None:intergenic | 40.0% | |
| ATCCTTTCATCGTTTGTTCG+TGG | + | chr4_1:28809362-28809381 | Msa0543170:intron | 40.0% | |
| AACCACGAACAAACGATGAA+AGG | - | chr4_1:28809367-28809386 | None:intergenic | 40.0% | |
| ACTGCAAAGTATGGTACTCA+AGG | + | chr4_1:28810062-28810081 | Msa0543170:CDS | 40.0% | |
| CAAAGTATGGTACTCAAGGT+TGG | + | chr4_1:28810066-28810085 | Msa0543170:CDS | 40.0% | |
| TCTTTCTTGGGGATATCCAA+TGG | + | chr4_1:28810104-28810123 | Msa0543170:CDS | 40.0% | |
| TCTTCACCTTATAGCCTTTC+GGG | - | chr4_1:28810160-28810179 | None:intergenic | 40.0% | |
| GGACCTGAACAAAATGCATT+GGG | + | chr4_1:28810269-28810288 | Msa0543170:CDS | 40.0% | |
| !! | TTCTTGGAGGTATCTTTGCA+GGG | + | chr4_1:28810312-28810331 | Msa0543170:CDS | 40.0% |
| ! | GGGTAACACTTGATTGGTTA+TGG | + | chr4_1:28810333-28810352 | Msa0543170:CDS | 40.0% |
| !! | ATAGTGGTCTGTTGGCTTCT+TGG | + | chr4_1:28807532-28807551 | Msa0543170:CDS | 45.0% |
| !! | GTCTGTTGGCTTCTTGGAAA+TGG | + | chr4_1:28807538-28807557 | Msa0543170:CDS | 45.0% |
| CTGGTTAGCGTTAATGTCTC+TGG | + | chr4_1:28807679-28807698 | Msa0543170:intron | 45.0% | |
| CCAAATGCTCGGCTCAAAAA+GGG | - | chr4_1:28807842-28807861 | None:intergenic | 45.0% | |
| ACCAAATGCTCGGCTCAAAA+AGG | - | chr4_1:28807843-28807862 | None:intergenic | 45.0% | |
| ACAAGAGTAAGCACCCTAGA+GGG | - | chr4_1:28807980-28807999 | None:intergenic | 45.0% | |
| TACAAGAGTAAGCACCCTAG+AGG | - | chr4_1:28807981-28808000 | None:intergenic | 45.0% | |
| GCTAGTGTTCCAACTGCAAA+TGG | - | chr4_1:28808010-28808029 | None:intergenic | 45.0% | |
| ACCTATTTACGTGCCGTAGT+TGG | + | chr4_1:28808202-28808221 | Msa0543170:intron | 45.0% | |
| TCCAACTACGGCACGTAAAT+AGG | - | chr4_1:28808206-28808225 | None:intergenic | 45.0% | |
| ACATCTGGTAAAGGAGGGAT+TGG | + | chr4_1:28808233-28808252 | Msa0543170:CDS | 45.0% | |
| TTAGCAGATGCTCATGCACA+AGG | + | chr4_1:28808296-28808315 | Msa0543170:CDS | 45.0% | |
| CATGCACAAGGAGGAATGAT+TGG | + | chr4_1:28808308-28808327 | Msa0543170:CDS | 45.0% | |
| GTTCAGGTCAGCATCATCAA+TGG | + | chr4_1:28808359-28808378 | Msa0543170:intron | 45.0% | |
| AGCATCAGGTGCTCTAACAT+CGG | + | chr4_1:28808643-28808662 | Msa0543170:CDS | 45.0% | |
| !!! | CTTCGGATGCTGCTTTTGAA+CGG | - | chr4_1:28809016-28809035 | None:intergenic | 45.0% |
| GTTCAAAAGCAGCATCCGAA+GGG | + | chr4_1:28809015-28809034 | Msa0543170:CDS | 45.0% | |
| GTACTTCTCGAAATGAGGTC+TGG | - | chr4_1:28809079-28809098 | None:intergenic | 45.0% | |
| GATACCGGAACACACAGTTT+AGG | + | chr4_1:28809316-28809335 | Msa0543170:CDS | 45.0% | |
| TGTGCCTAAACTGTGTGTTC+CGG | - | chr4_1:28809323-28809342 | None:intergenic | 45.0% | |
| GAACACACAGTTTAGGCACA+TGG | + | chr4_1:28809323-28809342 | Msa0543170:CDS | 45.0% | |
| GTATCCACCGCACACATTTA+GGG | - | chr4_1:28809428-28809447 | None:intergenic | 45.0% | |
| AGTATCCACCGCACACATTT+AGG | - | chr4_1:28809429-28809448 | None:intergenic | 45.0% | |
| AATGTGTGCGGTGGATACTA+TGG | + | chr4_1:28809430-28809449 | Msa0543170:intron | 45.0% | |
| CTTCACCTTATAGCCTTTCG+GGG | - | chr4_1:28810159-28810178 | None:intergenic | 45.0% | |
| GGGACCTGAACAAAATGCAT+TGG | + | chr4_1:28810268-28810287 | Msa0543170:intron | 45.0% | |
| !! | CTTCTTGGAGGTATCTTTGC+AGG | + | chr4_1:28810311-28810330 | Msa0543170:CDS | 45.0% |
| !! | TCTTGGAGGTATCTTTGCAG+GGG | + | chr4_1:28810313-28810332 | Msa0543170:CDS | 45.0% |
| TTGCAGGGGTAACACTTGAT+TGG | + | chr4_1:28810327-28810346 | Msa0543170:CDS | 45.0% | |
| !!! | TTATTTTATATATTTTTCTT+TGG | + | chr4_1:28807907-28807926 | Msa0543170:intron | 5.0% |
| ATCACCTCAATACGTGGTGG+AGG | - | chr4_1:28807374-28807393 | None:intergenic | 50.0% | |
| ACATCAGACAACCTAACGCC+GGG | - | chr4_1:28807759-28807778 | None:intergenic | 50.0% | |
| CACATCAGACAACCTAACGC+CGG | - | chr4_1:28807760-28807779 | None:intergenic | 50.0% | |
| !! | CCCTTTTTGAGCCGAGCATT+TGG | + | chr4_1:28807839-28807858 | Msa0543170:intron | 50.0% |
| TGACCCAGCAACCAAATGCT+CGG | - | chr4_1:28807853-28807872 | None:intergenic | 50.0% | |
| ! | GGAGGGATTGGAGCATTCAT+TGG | + | chr4_1:28808245-28808264 | Msa0543170:CDS | 50.0% |
| !!! | AGTTTTAGACGCCTCGGCAA+AGG | - | chr4_1:28808478-28808497 | None:intergenic | 50.0% |
| !! | GTGCTCTAACATCGGCTTTG+AGG | + | chr4_1:28808651-28808670 | Msa0543170:CDS | 50.0% |
| ! | TCTAAGGACGGACTTCGCAA+AGG | + | chr4_1:28808701-28808720 | Msa0543170:CDS | 50.0% |
| CAGCACTCTGATGCTTAGCA+TGG | + | chr4_1:28808736-28808755 | Msa0543170:intron | 50.0% | |
| CGTTCAAAAGCAGCATCCGA+AGG | + | chr4_1:28809014-28809033 | Msa0543170:CDS | 50.0% | |
| TGATCCCTAAATGTGTGCGG+TGG | + | chr4_1:28809421-28809440 | Msa0543170:intron | 50.0% | |
| ! | TCTCTCGGTGTATGTCTCGT+TGG | + | chr4_1:28809481-28809500 | Msa0543170:intron | 50.0% |
| AAGTGAGAACACAGACAGCG+AGG | - | chr4_1:28810133-28810152 | None:intergenic | 50.0% | |
| TTCTGCCCCGAAAGGCTATA+AGG | + | chr4_1:28810151-28810170 | Msa0543170:CDS | 50.0% | |
| TGAGCCTCCACCACGTATTG+AGG | + | chr4_1:28807367-28807386 | Msa0543170:CDS | 55.0% | |
| !!! | CTGGTTTTATGCCCGGCGTT+AGG | + | chr4_1:28807745-28807764 | Msa0543170:intron | 55.0% |
| TGAGCCGAGCATTTGGTTGC+TGG | + | chr4_1:28807846-28807865 | Msa0543170:intron | 55.0% | |
| GAGCCGAGCATTTGGTTGCT+GGG | + | chr4_1:28807847-28807866 | Msa0543170:intron | 55.0% | |
| GAGCATTTGGTTGCTGGGTC+AGG | + | chr4_1:28807852-28807871 | Msa0543170:intron | 55.0% | |
| GCAGATGCTCATGCACAAGG+AGG | + | chr4_1:28808299-28808318 | Msa0543170:CDS | 55.0% | |
| TCTGGATTCCAGCTGCAGCA+AGG | - | chr4_1:28809061-28809080 | None:intergenic | 55.0% | |
| ACAGACAGCGAGGTAGCCAT+TGG | - | chr4_1:28810123-28810142 | None:intergenic | 55.0% | |
| GTTCTCACTTCTGCCCCGAA+AGG | + | chr4_1:28810143-28810162 | Msa0543170:CDS | 55.0% | |
| TCAGCTGACCTTGCTGCAGC+TGG | + | chr4_1:28809050-28809069 | Msa0543170:CDS | 60.0% | |
| CTGATGCTGCAGCACCGCCA+AGG | - | chr4_1:28808631-28808650 | None:intergenic | 65.0% | |
| !! | CTTGGCGGTGCTGCAGCATC+AGG | + | chr4_1:28808629-28808648 | Msa0543170:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 28807356 | 28810376 | 28807356 | ID=Msa0543170;Name=Msa0543170 |
| chr4_1 | mRNA | 28807356 | 28810376 | 28807356 | ID=Msa0543170-mRNA-1;Parent=Msa0543170;Name=Msa0543170-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0|0|1|1|1|9|0|414 |
| chr4_1 | exon | 28807356 | 28807388 | 28807356 | ID=Msa0543170-mRNA-1:exon:7784;Parent=Msa0543170-mRNA-1 |
| chr4_1 | exon | 28807517 | 28807621 | 28807517 | ID=Msa0543170-mRNA-1:exon:7785;Parent=Msa0543170-mRNA-1 |
| chr4_1 | exon | 28807968 | 28808123 | 28807968 | ID=Msa0543170-mRNA-1:exon:7786;Parent=Msa0543170-mRNA-1 |
| chr4_1 | exon | 28808221 | 28808364 | 28808221 | ID=Msa0543170-mRNA-1:exon:7787;Parent=Msa0543170-mRNA-1 |
| chr4_1 | exon | 28808623 | 28808728 | 28808623 | ID=Msa0543170-mRNA-1:exon:7788;Parent=Msa0543170-mRNA-1 |
| chr4_1 | exon | 28808922 | 28809094 | 28808922 | ID=Msa0543170-mRNA-1:exon:7789;Parent=Msa0543170-mRNA-1 |
| chr4_1 | exon | 28809184 | 28809344 | 28809184 | ID=Msa0543170-mRNA-1:exon:7790;Parent=Msa0543170-mRNA-1 |
| chr4_1 | exon | 28809914 | 28810172 | 28809914 | ID=Msa0543170-mRNA-1:exon:7791;Parent=Msa0543170-mRNA-1 |
| chr4_1 | exon | 28810269 | 28810376 | 28810269 | ID=Msa0543170-mRNA-1:exon:7792;Parent=Msa0543170-mRNA-1 |
| chr4_1 | CDS | 28807356 | 28807388 | 28807356 | ID=Msa0543170-mRNA-1:cds;Parent=Msa0543170-mRNA-1 |
| chr4_1 | CDS | 28807517 | 28807621 | 28807517 | ID=Msa0543170-mRNA-1:cds;Parent=Msa0543170-mRNA-1 |
| chr4_1 | CDS | 28807968 | 28808123 | 28807968 | ID=Msa0543170-mRNA-1:cds;Parent=Msa0543170-mRNA-1 |
| chr4_1 | CDS | 28808221 | 28808364 | 28808221 | ID=Msa0543170-mRNA-1:cds;Parent=Msa0543170-mRNA-1 |
| chr4_1 | CDS | 28808623 | 28808728 | 28808623 | ID=Msa0543170-mRNA-1:cds;Parent=Msa0543170-mRNA-1 |
| chr4_1 | CDS | 28808922 | 28809094 | 28808922 | ID=Msa0543170-mRNA-1:cds;Parent=Msa0543170-mRNA-1 |
| chr4_1 | CDS | 28809184 | 28809344 | 28809184 | ID=Msa0543170-mRNA-1:cds;Parent=Msa0543170-mRNA-1 |
| chr4_1 | CDS | 28809914 | 28810172 | 28809914 | ID=Msa0543170-mRNA-1:cds;Parent=Msa0543170-mRNA-1 |
| chr4_1 | CDS | 28810269 | 28810376 | 28810269 | ID=Msa0543170-mRNA-1:cds;Parent=Msa0543170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
