Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398550 | KEH17554.1 | 97.826 | 414 | 9 | 0 | 1 | 414 | 1 | 414 | 0.0 | 813 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398550 | sp|Q9M0Y3|ENT3_ARATH | 70.244 | 410 | 121 | 1 | 3 | 412 | 6 | 414 | 0.0 | 600 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398550 | A0A072TIZ8 | 97.826 | 414 | 9 | 0 | 1 | 414 | 1 | 414 | 0.0 | 813 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0677910 | Msa1398550 | 0.943828 | 5.939433e-103 | -8.615850e-47 |
| Msa0543170 | Msa1398550 | 0.824482 | 7.879289e-54 | -8.615850e-47 |
| Msa0599070 | Msa1398550 | 0.844327 | 8.097431e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398550 | MtrunA17_Chr4g0022871 | 97.826 | 414 | 9 | 0 | 1 | 414 | 1 | 414 | 0.0 | 813 |
| Msa1398550 | MtrunA17_Chr2g0323381 | 82.609 | 414 | 72 | 0 | 1 | 414 | 1 | 414 | 0.0 | 682 |
| Msa1398550 | MtrunA17_Chr4g0022861 | 81.407 | 398 | 74 | 0 | 17 | 414 | 1 | 398 | 0.0 | 666 |
| Msa1398550 | MtrunA17_Chr2g0280971 | 68.447 | 412 | 128 | 2 | 3 | 412 | 30 | 441 | 0.0 | 572 |
| Msa1398550 | MtrunA17_Chr2g0280991 | 69.118 | 408 | 124 | 1 | 7 | 412 | 14 | 421 | 0.0 | 567 |
| Msa1398550 | MtrunA17_Chr4g0022801 | 75.000 | 396 | 71 | 1 | 47 | 414 | 10 | 405 | 0.0 | 560 |
| Msa1398550 | MtrunA17_Chr8g0335821 | 58.127 | 363 | 150 | 1 | 52 | 412 | 2 | 364 | 1.66e-136 | 395 |
| Msa1398550 | MtrunA17_Chr1g0184961 | 77.559 | 254 | 45 | 2 | 47 | 293 | 104 | 352 | 2.12e-133 | 387 |
| Msa1398550 | MtrunA17_Chr4g0020331 | 32.274 | 409 | 249 | 8 | 11 | 410 | 26 | 415 | 6.28e-58 | 195 |
| Msa1398550 | MtrunA17_Chr3g0103741 | 30.488 | 410 | 255 | 9 | 11 | 410 | 34 | 423 | 2.40e-48 | 170 |
| Msa1398550 | MtrunA17_Chr2g0280961 | 57.047 | 149 | 60 | 2 | 224 | 368 | 83 | 231 | 7.79e-45 | 155 |
| Msa1398550 | MtrunA17_Chr2g0280961 | 56.180 | 89 | 39 | 0 | 52 | 140 | 2 | 90 | 5.06e-25 | 102 |
| Msa1398550 | MtrunA17_Chr4g0063911 | 27.423 | 423 | 264 | 8 | 1 | 410 | 6 | 398 | 5.36e-42 | 152 |
| Msa1398550 | MtrunA17_Chr1g0184971 | 79.365 | 63 | 13 | 0 | 296 | 358 | 2 | 64 | 4.65e-29 | 108 |
| Msa1398550 | MtrunA17_Chr4g0022811 | 76.744 | 43 | 10 | 0 | 4 | 46 | 2 | 44 | 7.47e-18 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398550 | AT4G05120.1 | 70.244 | 410 | 121 | 1 | 3 | 412 | 6 | 414 | 0.0 | 600 |
| Msa1398550 | AT4G05120.2 | 70.244 | 410 | 121 | 1 | 3 | 412 | 6 | 414 | 0.0 | 600 |
| Msa1398550 | AT4G05110.3 | 65.610 | 410 | 140 | 1 | 3 | 412 | 6 | 414 | 0.0 | 561 |
| Msa1398550 | AT4G05110.1 | 65.610 | 410 | 140 | 1 | 3 | 412 | 6 | 414 | 0.0 | 561 |
| Msa1398550 | AT4G05110.2 | 65.366 | 410 | 141 | 1 | 3 | 412 | 6 | 414 | 0.0 | 559 |
| Msa1398550 | AT4G05140.1 | 64.146 | 410 | 147 | 0 | 3 | 412 | 6 | 415 | 0.0 | 553 |
| Msa1398550 | AT3G09990.1 | 63.951 | 405 | 145 | 1 | 11 | 414 | 13 | 417 | 0.0 | 541 |
| Msa1398550 | AT4G05130.1 | 62.136 | 412 | 155 | 1 | 3 | 414 | 6 | 416 | 0.0 | 541 |
| Msa1398550 | AT1G61630.1 | 60.870 | 414 | 153 | 2 | 4 | 412 | 5 | 414 | 8.09e-180 | 507 |
| Msa1398550 | AT1G70330.1 | 32.067 | 421 | 253 | 9 | 2 | 410 | 51 | 450 | 1.36e-55 | 190 |
| Msa1398550 | AT1G02630.1 | 28.928 | 401 | 248 | 7 | 16 | 410 | 20 | 389 | 1.62e-46 | 164 |
| Msa1398550 | AT1G02630.2 | 29.798 | 198 | 137 | 2 | 16 | 212 | 20 | 216 | 3.92e-24 | 102 |
Find 89 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCACCTTATAGCCTTTC+GGG | 0.166232 | tig0022269:-38822 | None:intergenic |
| ACAAGGAAACGGATTCTATT+TGG | 0.191611 | tig0022269:+36725 | Msa1398550:CDS |
| AGGAAATAAGCAATTGTTAT+TGG | 0.204429 | tig0022269:+37876 | Msa1398550:CDS |
| CTTGATTGGTTATGGTTAAT+AGG | 0.205341 | tig0022269:+39008 | Msa1398550:CDS |
| TACTTCACAATTGGTAATTT+AGG | 0.225152 | tig0022269:-37647 | None:intergenic |
| TTACTATGTTTATTTATTTC+CGG | 0.229116 | tig0022269:+36264 | Msa1398550:CDS |
| TTCTTCACCTTATAGCCTTT+CGG | 0.245719 | tig0022269:-38823 | None:intergenic |
| GATAATGTTGACATCTTTCT+TGG | 0.252333 | tig0022269:+38756 | Msa1398550:CDS |
| ATCTTGGTATTGTTTCTTCT+TGG | 0.254429 | tig0022269:+38963 | Msa1398550:CDS |
| GTCTGTTGGCTTCTTGGAAA+TGG | 0.258111 | tig0022269:+36202 | Msa1398550:CDS |
| ATGCTGACCTGAACAAATTC+TGG | 0.275263 | tig0022269:-37014 | None:intergenic |
| AGCAATATTTGAAAATTCTA+AGG | 0.295643 | tig0022269:+37345 | Msa1398550:CDS |
| CTCAAATTGTCTTAATTCTT+CGG | 0.301282 | tig0022269:-37848 | None:intergenic |
| ATAGTGGTCTGTTGGCTTCT+TGG | 0.306364 | tig0022269:+36196 | Msa1398550:CDS |
| CTTGGCGGTGCTGCAGCATC+AGG | 0.325226 | tig0022269:+37289 | Msa1398550:CDS |
| TAATTGCTATGTATAATGTA+TGG | 0.328838 | tig0022269:+38593 | Msa1398550:CDS |
| TGCATAGTTAGTGGTGCATT+TGG | 0.338224 | tig0022269:+36936 | Msa1398550:CDS |
| GGGTAACACTTGATTGGTTA+TGG | 0.340185 | tig0022269:+39000 | Msa1398550:CDS |
| TTCTGCCCCGAAAGGCTATA+AGG | 0.352392 | tig0022269:+38816 | Msa1398550:CDS |
| TTGGTATTGTTTCTTCTTGG+AGG | 0.389863 | tig0022269:+38966 | Msa1398550:CDS |
| TCTGTTGGCTTCTTGGAAAT+GGG | 0.394950 | tig0022269:+36203 | Msa1398550:CDS |
| ATAATGTTGACATCTTTCTT+GGG | 0.400944 | tig0022269:+38757 | Msa1398550:CDS |
| TCAGCTGACCTTGCTGCAGC+TGG | 0.400973 | tig0022269:+37710 | Msa1398550:CDS |
| GGAGGGATTGGAACATTCAT+TGG | 0.406478 | tig0022269:+36909 | Msa1398550:CDS |
| AAATGCATTGGGAAATATCT+TGG | 0.414446 | tig0022269:+38947 | Msa1398550:CDS |
| TTGCAGGGGTAACACTTGAT+TGG | 0.414767 | tig0022269:+38994 | Msa1398550:CDS |
| ACTGATCAAAATCTTGAAGT+TGG | 0.417735 | tig0022269:+38639 | Msa1398550:CDS |
| CATGAATCCAGAATTTGTTC+AGG | 0.422496 | tig0022269:+37007 | Msa1398550:CDS |
| GAACGGTAGTACTTCACAAT+TGG | 0.426412 | tig0022269:-37656 | None:intergenic |
| TTATTGTTGTAGTCTTTCCT+TGG | 0.427988 | tig0022269:+37271 | Msa1398550:intron |
| GTGCTCTAACATCGGCTTTG+AGG | 0.429741 | tig0022269:+37311 | Msa1398550:CDS |
| TACAATTAAAACAGCCAAAA+CGG | 0.430063 | tig0022269:-36768 | None:intergenic |
| AAGGTCAGCTGAAACAGTTT+TGG | 0.431717 | tig0022269:-37699 | None:intergenic |
| CATGCACAAGGAGGAATGAT+TGG | 0.442301 | tig0022269:+36972 | Msa1398550:CDS |
| AAGCTCAAACAAGGTTGATA+AGG | 0.443767 | tig0022269:-37594 | None:intergenic |
| TAGTTGGATTTAGCAACATC+TGG | 0.449427 | tig0022269:+36882 | Msa1398550:intron |
| TATAATGTATGGGATCTTAT+CGG | 0.459552 | tig0022269:+38604 | Msa1398550:CDS |
| ATTGGTATATGCATAGTTAG+TGG | 0.468620 | tig0022269:+36927 | Msa1398550:CDS |
| TTGTTGTAGTCTTTCCTTGG+CGG | 0.468717 | tig0022269:+37274 | Msa1398550:intron |
| GGGAAAATATACTGCAATAG+TGG | 0.484444 | tig0022269:+36180 | Msa1398550:intron |
| ACATCTGGTAAAGGAGGGAT+TGG | 0.484610 | tig0022269:+36897 | Msa1398550:CDS |
| GATACCGGATTACACAGTTT+AGG | 0.487502 | tig0022269:+37976 | Msa1398550:CDS |
| AATTGCTATGTATAATGTAT+GGG | 0.488467 | tig0022269:+38594 | Msa1398550:CDS |
| GGGACCTGAACAAAATGCAT+TGG | 0.488651 | tig0022269:+38935 | Msa1398550:intron |
| TGGTTATGGTTAATAGGTAA+AGG | 0.488739 | tig0022269:+39014 | Msa1398550:CDS |
| CTGACATTGTCTATATTCCC+TGG | 0.495635 | tig0022269:+37940 | Msa1398550:CDS |
| GTACTTCTCGAAATGAGGTC+TGG | 0.497951 | tig0022269:-37736 | None:intergenic |
| AGCAATTCTTACTTACTATG+AGG | 0.505159 | tig0022269:+36691 | Msa1398550:CDS |
| GGACCTGAACAAAATGCATT+GGG | 0.505661 | tig0022269:+38936 | Msa1398550:CDS |
| GCTAGTGTTCCAACTGCAAA+TGG | 0.506628 | tig0022269:-36671 | None:intergenic |
| TGCAGAAATATCATCCCTCT+AGG | 0.522851 | tig0022269:+36627 | Msa1398550:intron |
| GATTTAGCAACATCTGGTAA+AGG | 0.531613 | tig0022269:+36888 | Msa1398550:CDS |
| AAACCGTACTTCTCGAAATG+AGG | 0.538163 | tig0022269:-37741 | None:intergenic |
| TGTGCCTAAACTGTGTAATC+CGG | 0.542014 | tig0022269:-37980 | None:intergenic |
| CAAAGTATGGTACTCAAGGT+TGG | 0.542078 | tig0022269:+38731 | Msa1398550:CDS |
| ACAGACAGCGAGGTAGCCAT+TGG | 0.547272 | tig0022269:-38785 | None:intergenic |
| ATTCTGGATTCATGTATGAC+AGG | 0.549368 | tig0022269:-36998 | None:intergenic |
| ATACTGCAATAGTGGTCTGT+TGG | 0.551193 | tig0022269:+36188 | Msa1398550:CDS |
| CTGATGCTGCAGCACCGCCA+AGG | 0.552472 | tig0022269:-37288 | None:intergenic |
| TGAGCCTCCACCACGTATTG+AGG | 0.554558 | tig0022269:+36035 | Msa1398550:CDS |
| TATGGTTAATAGGTAAAGGA+TGG | 0.554780 | tig0022269:+39018 | Msa1398550:CDS |
| GTATATCAGCCATTTGCAGT+TGG | 0.555669 | tig0022269:+36662 | Msa1398550:CDS |
| AAATTGTCTTAATTCTTCGG+TGG | 0.562541 | tig0022269:-37845 | None:intergenic |
| TCTTTCTTGGGGATATCCAA+TGG | 0.562937 | tig0022269:+38769 | Msa1398550:CDS |
| TTTGCAGTGAAATAAAATGC+TGG | 0.563621 | tig0022269:-38712 | None:intergenic |
| TAATGTTGACATCTTTCTTG+GGG | 0.567874 | tig0022269:+38758 | Msa1398550:CDS |
| ACTGCAAAGTATGGTACTCA+AGG | 0.567878 | tig0022269:+38727 | Msa1398550:CDS |
| TTAAGACAATTTGAGCGCAA+AGG | 0.573253 | tig0022269:+37856 | Msa1398550:CDS |
| AGCATCAGGTGCTCTAACAT+CGG | 0.577110 | tig0022269:+37303 | Msa1398550:CDS |
| ATCACCTCAATACGTGGTGG+AGG | 0.577633 | tig0022269:-36039 | None:intergenic |
| TTAGCAACATCTGGTAAAGG+AGG | 0.580672 | tig0022269:+36891 | Msa1398550:CDS |
| CGTTCAAAAGCAGCATCCGA+AGG | 0.583519 | tig0022269:+37674 | Msa1398550:CDS |
| TACAAGAGTAAGCACCCTAG+AGG | 0.583761 | tig0022269:-36642 | None:intergenic |
| ATATTTGAAAATTCTAAGGA+CGG | 0.599191 | tig0022269:+37349 | Msa1398550:CDS |
| GTTCTCACTTCTGCCCCGAA+AGG | 0.606657 | tig0022269:+38808 | Msa1398550:CDS |
| CTTCACCTTATAGCCTTTCG+GGG | 0.611942 | tig0022269:-38821 | None:intergenic |
| TAGCAACATCTGGTAAAGGA+GGG | 0.612233 | tig0022269:+36892 | Msa1398550:CDS |
| AACACAAAGAAGCTCAAACA+AGG | 0.615784 | tig0022269:-37603 | None:intergenic |
| TTAGCAGATGCTCATGCACA+AGG | 0.620251 | tig0022269:+36960 | Msa1398550:CDS |
| GCAGAAATATCATCCCTCTA+GGG | 0.623345 | tig0022269:+36628 | Msa1398550:intron |
| GTTCAAAAGCAGCATCCGAA+GGG | 0.625870 | tig0022269:+37675 | Msa1398550:CDS |
| ACAAGAGTAAGCACCCTAGA+GGG | 0.631895 | tig0022269:-36641 | None:intergenic |
| TCTAAGGACGGACTTCGCAA+AGG | 0.638434 | tig0022269:+37361 | Msa1398550:CDS |
| GATTACACAGTTTAGGCACA+TGG | 0.648704 | tig0022269:+37983 | Msa1398550:CDS |
| TCTGGATTCCAGCTGCAGCA+AGG | 0.649624 | tig0022269:-37718 | None:intergenic |
| TATATCACCTCAATACGTGG+TGG | 0.675337 | tig0022269:-36042 | None:intergenic |
| ATATATATCACCTCAATACG+TGG | 0.678311 | tig0022269:-36045 | None:intergenic |
| AAGTGAGAACACAGACAGCG+AGG | 0.688797 | tig0022269:-38795 | None:intergenic |
| GCAGATGCTCATGCACAAGG+AGG | 0.707799 | tig0022269:+36963 | Msa1398550:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAGCATATATAATTT+CGG | - | tig0022269:36101-36120 | None:intergenic | 10.0% |
| !!! | ATATGCTTTTTTTTTTTTGA+AGG | + | tig0022269:36108-36127 | Msa1398550:intron | 15.0% |
| !!! | TTAAATTATTTTTCATTTGC+AGG | + | tig0022269:36159-36178 | Msa1398550:intron | 15.0% |
| !!! | TAAATTATTTTTCATTTGCA+GGG | + | tig0022269:36160-36179 | Msa1398550:intron | 15.0% |
| !! | TTACTATGTTTATTTATTTC+CGG | + | tig0022269:36264-36283 | Msa1398550:CDS | 15.0% |
| !! | AAGTTAACAAAAAAATTAAC+AGG | - | tig0022269:36797-36816 | None:intergenic | 15.0% |
| !!! | AAATTGATTTCTTTTAGTAT+CGG | + | tig0022269:37485-37504 | Msa1398550:intron | 15.0% |
| !! | TCATTAGTTATTACTTATTT+CGG | - | tig0022269:38211-38230 | None:intergenic | 15.0% |
| !!! | AATGATATTTTAAGAAGTAA+TGG | + | tig0022269:38450-38469 | Msa1398550:intron | 15.0% |
| !!! | TGTATGTTTTTTACTTTTTT+AGG | + | tig0022269:38914-38933 | Msa1398550:intron | 15.0% |
| !!! | GTATGTTTTTTACTTTTTTA+GGG | + | tig0022269:38915-38934 | Msa1398550:intron | 15.0% |
| !! | CAAAATAAATGATGTGTAAT+AGG | - | tig0022269:36385-36404 | None:intergenic | 20.0% |
| !!! | ACATCATTTATTTTGTAATC+TGG | + | tig0022269:36390-36409 | Msa1398550:intron | 20.0% |
| !! | TATAACAGATATAACAAAAG+CGG | - | tig0022269:36480-36499 | None:intergenic | 20.0% |
| !! | AGCAATATTTGAAAATTCTA+AGG | + | tig0022269:37345-37364 | Msa1398550:CDS | 20.0% |
| !!! | ATATTTGAAAATTCTAAGGA+CGG | + | tig0022269:37349-37368 | Msa1398550:CDS | 20.0% |
| !! | CAAAAATGAAAAACATATCT+CGG | + | tig0022269:38127-38146 | Msa1398550:intron | 20.0% |
| !! | AATTGATATTTGAATGTGTT+GGG | - | tig0022269:38327-38346 | None:intergenic | 20.0% |
| !! | AAATTGATATTTGAATGTGT+TGG | - | tig0022269:38328-38347 | None:intergenic | 20.0% |
| !! | TTGATATTTCCATTTATTAC+AGG | + | tig0022269:38557-38576 | Msa1398550:intron | 20.0% |
| !! | TAATTGCTATGTATAATGTA+TGG | + | tig0022269:38593-38612 | Msa1398550:CDS | 20.0% |
| !! | AATTGCTATGTATAATGTAT+GGG | + | tig0022269:38594-38613 | Msa1398550:CDS | 20.0% |
| !! | ATTTAAATAACTCTAAACCT+CGG | - | tig0022269:38872-38891 | None:intergenic | 20.0% |
| ! | CAAAAATCAATACAAGGAAA+CGG | + | tig0022269:36714-36733 | Msa1398550:CDS | 25.0% |
| ! | TACAATTAAAACAGCCAAAA+CGG | - | tig0022269:36771-36790 | None:intergenic | 25.0% |
| ! | ACAATGCTAACTTTGATATT+CGG | + | tig0022269:37074-37093 | Msa1398550:intron | 25.0% |
| ! | TTATATAACGATTGCAATTG+CGG | + | tig0022269:37163-37182 | Msa1398550:intron | 25.0% |
| !! | ACATATGCAACTCTTTTTAA+AGG | + | tig0022269:37246-37265 | Msa1398550:intron | 25.0% |
| ! | TGGATATCTTTATGAATTGT+AGG | - | tig0022269:37513-37532 | None:intergenic | 25.0% |
| !! | TACTTCACAATTGGTAATTT+AGG | - | tig0022269:37650-37669 | None:intergenic | 25.0% |
| !! | CTTTTCTTTTCAATTTCTCA+CGG | + | tig0022269:37764-37783 | Msa1398550:intron | 25.0% |
| !!! | GACTAATTTGTGTTTTTTTC+AGG | + | tig0022269:37822-37841 | Msa1398550:intron | 25.0% |
| ! | CTCAAATTGTCTTAATTCTT+CGG | - | tig0022269:37851-37870 | None:intergenic | 25.0% |
| ! | AGGAAATAAGCAATTGTTAT+TGG | + | tig0022269:37876-37895 | Msa1398550:CDS | 25.0% |
| ! | TATCTTCTGATAAAAATCCA+GGG | - | tig0022269:37960-37979 | None:intergenic | 25.0% |
| ! | GATTATCAAATACACATTTG+AGG | + | tig0022269:38184-38203 | Msa1398550:intron | 25.0% |
| ! | TTATCTTTCGCTATTCAATT+TGG | - | tig0022269:38250-38269 | None:intergenic | 25.0% |
| ! | AATAGCGAAAGATAAATTTG+AGG | + | tig0022269:38255-38274 | Msa1398550:intron | 25.0% |
| ! | ATATCATTCCAATATCTATC+TGG | - | tig0022269:38438-38457 | None:intergenic | 25.0% |
| ! | TGTATGTTCAATTTCAAAAC+TGG | + | tig0022269:38534-38553 | Msa1398550:intron | 25.0% |
| ! | TATAATGTATGGGATCTTAT+CGG | + | tig0022269:38604-38623 | Msa1398550:CDS | 25.0% |
| !!! | TTTTATTTCACTGCAAAGTA+TGG | + | tig0022269:38718-38737 | Msa1398550:CDS | 25.0% |
| ! | ATAATGTTGACATCTTTCTT+GGG | + | tig0022269:38757-38776 | Msa1398550:CDS | 25.0% |
| !!! | GAAGTATTCTAGTTTCTTAA+AGG | - | tig0022269:38850-38869 | None:intergenic | 25.0% |
| ATATATATCACCTCAATACG+TGG | - | tig0022269:36048-36067 | None:intergenic | 30.0% | |
| TCAGAAAGTAGATACATTAC+CGG | - | tig0022269:36286-36305 | None:intergenic | 30.0% | |
| TAACCAGAGTGAATAGTTAA+CGG | - | tig0022269:36330-36349 | None:intergenic | 30.0% | |
| ! | TATTTCTGCACAAATAGGAA+AGG | - | tig0022269:36617-36636 | None:intergenic | 30.0% |
| ! | GATGATATTTCTGCACAAAT+AGG | - | tig0022269:36622-36641 | None:intergenic | 30.0% |
| AGCAATTCTTACTTACTATG+AGG | + | tig0022269:36691-36710 | Msa1398550:CDS | 30.0% | |
| ATGAGGCAAAAATCAATACA+AGG | + | tig0022269:36708-36727 | Msa1398550:CDS | 30.0% | |
| !! | TGGATACACACTATTTTTCT+TGG | + | tig0022269:36745-36764 | Msa1398550:CDS | 30.0% |
| ATTCCTTCAAATTGTGCATT+TGG | + | tig0022269:36819-36838 | Msa1398550:intron | 30.0% | |
| TTCCTTCAAATTGTGCATTT+GGG | + | tig0022269:36820-36839 | Msa1398550:intron | 30.0% | |
| ATTGGTATATGCATAGTTAG+TGG | + | tig0022269:36927-36946 | Msa1398550:CDS | 30.0% | |
| CAATGCTAACTTTGATATTC+GGG | + | tig0022269:37075-37094 | Msa1398550:intron | 30.0% | |
| !! | GCATAAAATTGTTTCTGCAT+GGG | - | tig0022269:37120-37139 | None:intergenic | 30.0% |
| !!! | TATAAAAGTTTTAGACGCCT+CGG | - | tig0022269:37148-37167 | None:intergenic | 30.0% |
| AAAAGAGTTGCATATGTTGA+AGG | - | tig0022269:37243-37262 | None:intergenic | 30.0% | |
| TTATTGTTGTAGTCTTTCCT+TGG | + | tig0022269:37271-37290 | Msa1398550:intron | 30.0% | |
| CAAACTGAATCTCAATAGTA+AGG | - | tig0022269:37795-37814 | None:intergenic | 30.0% | |
| AAATTGTCTTAATTCTTCGG+TGG | - | tig0022269:37848-37867 | None:intergenic | 30.0% | |
| GTATCTTCTGATAAAAATCC+AGG | - | tig0022269:37961-37980 | None:intergenic | 30.0% | |
| ! | GGATTTTTATCAGAAGATAC+CGG | + | tig0022269:37961-37980 | Msa1398550:CDS | 30.0% |
| !!! | ATCCTTTCATCCTTTGTTTT+TGG | + | tig0022269:38022-38041 | Msa1398550:intron | 30.0% |
| AACCAAAAACAAAGGATGAA+AGG | - | tig0022269:38027-38046 | None:intergenic | 30.0% | |
| CCAAAAAGAACCAAAAACAA+AGG | - | tig0022269:38035-38054 | None:intergenic | 30.0% | |
| !!! | CCTTTGTTTTTGGTTCTTTT+TGG | + | tig0022269:38032-38051 | Msa1398550:intron | 30.0% |
| TTTCAATCCCTAAATGTATG+TGG | + | tig0022269:38079-38098 | Msa1398550:intron | 30.0% | |
| ATATCTCACCAGATAGATAT+TGG | + | tig0022269:38427-38446 | Msa1398550:intron | 30.0% | |
| !! | AAAACAACAAAAGTGGGTTA+AGG | + | tig0022269:38499-38518 | Msa1398550:intron | 30.0% |
| !! | AACTTCAAGATTTTGATCAG+TGG | - | tig0022269:38640-38659 | None:intergenic | 30.0% |
| ACTGATCAAAATCTTGAAGT+TGG | + | tig0022269:38639-38658 | Msa1398550:CDS | 30.0% | |
| TTTGCAGTGAAATAAAATGC+TGG | - | tig0022269:38715-38734 | None:intergenic | 30.0% | |
| GATAATGTTGACATCTTTCT+TGG | + | tig0022269:38756-38775 | Msa1398550:CDS | 30.0% | |
| TAATGTTGACATCTTTCTTG+GGG | + | tig0022269:38758-38777 | Msa1398550:CDS | 30.0% | |
| AAATGCATTGGGAAATATCT+TGG | + | tig0022269:38947-38966 | Msa1398550:CDS | 30.0% | |
| ! | ATCTTGGTATTGTTTCTTCT+TGG | + | tig0022269:38963-38982 | Msa1398550:CDS | 30.0% |
| ! | CTTGATTGGTTATGGTTAAT+AGG | + | tig0022269:39008-39027 | Msa1398550:CDS | 30.0% |
| TGGTTATGGTTAATAGGTAA+AGG | + | tig0022269:39014-39033 | Msa1398550:CDS | 30.0% | |
| TATGGTTAATAGGTAAAGGA+TGG | + | tig0022269:39018-39037 | Msa1398550:CDS | 30.0% | |
| GGGAAAATATACTGCAATAG+TGG | + | tig0022269:36180-36199 | Msa1398550:intron | 35.0% | |
| TATCCGTTAACTATTCACTC+TGG | + | tig0022269:36324-36343 | Msa1398550:intron | 35.0% | |
| !!! | TTGTAATCTGGTTTTATGCC+CGG | + | tig0022269:36402-36421 | Msa1398550:intron | 35.0% |
| CTGATGTGTAGATGTTTGTT+AGG | + | tig0022269:36436-36455 | Msa1398550:intron | 35.0% | |
| ! | ACAAGGAAACGGATTCTATT+TGG | + | tig0022269:36725-36744 | Msa1398550:CDS | 35.0% |
| !! | ACTATTTTTCTTGGCCGTTT+TGG | + | tig0022269:36754-36773 | Msa1398550:CDS | 35.0% |
| AACCCAAATGCACAATTTGA+AGG | - | tig0022269:36825-36844 | None:intergenic | 35.0% | |
| TAGTTGGATTTAGCAACATC+TGG | + | tig0022269:36882-36901 | Msa1398550:intron | 35.0% | |
| GATTTAGCAACATCTGGTAA+AGG | + | tig0022269:36888-36907 | Msa1398550:CDS | 35.0% | |
| ATTCTGGATTCATGTATGAC+AGG | - | tig0022269:37001-37020 | None:intergenic | 35.0% | |
| ! | CATGAATCCAGAATTTGTTC+AGG | + | tig0022269:37007-37026 | Msa1398550:CDS | 35.0% |
| !! | GGCATAAAATTGTTTCTGCA+TGG | - | tig0022269:37121-37140 | None:intergenic | 35.0% |
| ATCCATGATCATGATTCATG+TGG | + | tig0022269:37528-37547 | Msa1398550:intron | 35.0% | |
| TACCACATGAATCATGATCA+TGG | - | tig0022269:37533-37552 | None:intergenic | 35.0% | |
| !! | AAGCTCAAACAAGGTTGATA+AGG | - | tig0022269:37597-37616 | None:intergenic | 35.0% |
| AACACAAAGAAGCTCAAACA+AGG | - | tig0022269:37606-37625 | None:intergenic | 35.0% | |
| TTAAGACAATTTGAGCGCAA+AGG | + | tig0022269:37856-37875 | Msa1398550:CDS | 35.0% | |
| GTATCCACCACATACATTTA+GGG | - | tig0022269:38089-38108 | None:intergenic | 35.0% | |
| AGTATCCACCACATACATTT+AGG | - | tig0022269:38090-38109 | None:intergenic | 35.0% | |
| !! | AATGTATGTGGTGGATACTA+TGG | + | tig0022269:38091-38110 | Msa1398550:intron | 35.0% |
| CTATCTGGTGAGATATGATT+AGG | - | tig0022269:38423-38442 | None:intergenic | 35.0% | |
| TCTGCTCAAAACAACAAAAG+TGG | + | tig0022269:38492-38511 | Msa1398550:intron | 35.0% | |
| CTGCTCAAAACAACAAAAGT+GGG | + | tig0022269:38493-38512 | Msa1398550:intron | 35.0% | |
| ! | AAGAGCGTACCTGTAATAAA+TGG | - | tig0022269:38569-38588 | None:intergenic | 35.0% |
| TTCTTCACCTTATAGCCTTT+CGG | - | tig0022269:38826-38845 | None:intergenic | 35.0% | |
| AAGAAACTAGAATACTTCCG+AGG | + | tig0022269:38852-38871 | Msa1398550:intron | 35.0% | |
| ! | TTTCCCAATGCATTTTGTTC+AGG | - | tig0022269:38942-38961 | None:intergenic | 35.0% |
| ! | TTGGTATTGTTTCTTCTTGG+AGG | + | tig0022269:38966-38985 | Msa1398550:CDS | 35.0% |
| !!! | TTCTTGGAGGTATTTTTGCA+GGG | + | tig0022269:38979-38998 | Msa1398550:CDS | 35.0% |
| TATATCACCTCAATACGTGG+TGG | - | tig0022269:36045-36064 | None:intergenic | 40.0% | |
| ATACTGCAATAGTGGTCTGT+TGG | + | tig0022269:36188-36207 | Msa1398550:CDS | 40.0% | |
| !! | TCTGTTGGCTTCTTGGAAAT+GGG | + | tig0022269:36203-36222 | Msa1398550:CDS | 40.0% |
| ! | GAAATGGGTGTCTTTTCTCT+TGG | + | tig0022269:36218-36237 | Msa1398550:CDS | 40.0% |
| ! | TGAAAGTACAAAGAGCTGAG+AGG | - | tig0022269:36549-36568 | None:intergenic | 40.0% |
| TGCAGAAATATCATCCCTCT+AGG | + | tig0022269:36627-36646 | Msa1398550:intron | 40.0% | |
| GCAGAAATATCATCCCTCTA+GGG | + | tig0022269:36628-36647 | Msa1398550:intron | 40.0% | |
| GTATATCAGCCATTTGCAGT+TGG | + | tig0022269:36662-36681 | Msa1398550:CDS | 40.0% | |
| ACCTATTTACGTGTCGTAGT+TGG | + | tig0022269:36866-36885 | Msa1398550:intron | 40.0% | |
| TCCAACTACGACACGTAAAT+AGG | - | tig0022269:36870-36889 | None:intergenic | 40.0% | |
| TTAGCAACATCTGGTAAAGG+AGG | + | tig0022269:36891-36910 | Msa1398550:CDS | 40.0% | |
| TAGCAACATCTGGTAAAGGA+GGG | + | tig0022269:36892-36911 | Msa1398550:CDS | 40.0% | |
| TGCATAGTTAGTGGTGCATT+TGG | + | tig0022269:36936-36955 | Msa1398550:CDS | 40.0% | |
| ATGCTGACCTGAACAAATTC+TGG | - | tig0022269:37017-37036 | None:intergenic | 40.0% | |
| ! | ACAATTTTATGCCTTTGCCG+AGG | + | tig0022269:37128-37147 | Msa1398550:intron | 40.0% |
| TTGTTGTAGTCTTTCCTTGG+CGG | + | tig0022269:37274-37293 | Msa1398550:intron | 40.0% | |
| AAGAACTGCATGAATCAGAG+AGG | - | tig0022269:37567-37586 | None:intergenic | 40.0% | |
| GAACGGTAGTACTTCACAAT+TGG | - | tig0022269:37659-37678 | None:intergenic | 40.0% | |
| !!! | TGAAACAGTTTTGGACCCTT+CGG | - | tig0022269:37693-37712 | None:intergenic | 40.0% |
| ! | AAGGTCAGCTGAAACAGTTT+TGG | - | tig0022269:37702-37721 | None:intergenic | 40.0% |
| AGACCTCATTTCGAGAAGTA+CGG | + | tig0022269:37738-37757 | Msa1398550:intron | 40.0% | |
| AAACCGTACTTCTCGAAATG+AGG | - | tig0022269:37744-37763 | None:intergenic | 40.0% | |
| CTGACATTGTCTATATTCCC+TGG | + | tig0022269:37940-37959 | Msa1398550:CDS | 40.0% | |
| GATACCGGATTACACAGTTT+AGG | + | tig0022269:37976-37995 | Msa1398550:CDS | 40.0% | |
| TGTGCCTAAACTGTGTAATC+CGG | - | tig0022269:37983-38002 | None:intergenic | 40.0% | |
| GATTACACAGTTTAGGCACA+TGG | + | tig0022269:37983-38002 | Msa1398550:CDS | 40.0% | |
| CAATCCCTAAATGTATGTGG+TGG | + | tig0022269:38082-38101 | Msa1398550:intron | 40.0% | |
| ACTGCAAAGTATGGTACTCA+AGG | + | tig0022269:38727-38746 | Msa1398550:CDS | 40.0% | |
| CAAAGTATGGTACTCAAGGT+TGG | + | tig0022269:38731-38750 | Msa1398550:CDS | 40.0% | |
| TCTTTCTTGGGGATATCCAA+TGG | + | tig0022269:38769-38788 | Msa1398550:CDS | 40.0% | |
| TCTTCACCTTATAGCCTTTC+GGG | - | tig0022269:38825-38844 | None:intergenic | 40.0% | |
| GGACCTGAACAAAATGCATT+GGG | + | tig0022269:38936-38955 | Msa1398550:CDS | 40.0% | |
| !!! | CTTCTTGGAGGTATTTTTGC+AGG | + | tig0022269:38978-38997 | Msa1398550:CDS | 40.0% |
| !!! | TCTTGGAGGTATTTTTGCAG+GGG | + | tig0022269:38980-38999 | Msa1398550:CDS | 40.0% |
| ! | GGGTAACACTTGATTGGTTA+TGG | + | tig0022269:39000-39019 | Msa1398550:CDS | 40.0% |
| !! | ATAGTGGTCTGTTGGCTTCT+TGG | + | tig0022269:36196-36215 | Msa1398550:CDS | 45.0% |
| !! | GTCTGTTGGCTTCTTGGAAA+TGG | + | tig0022269:36202-36221 | Msa1398550:CDS | 45.0% |
| CTGGTTAGCGTTAATGTCTC+TGG | + | tig0022269:36343-36362 | Msa1398550:intron | 45.0% | |
| CCAAATGCTCGGCTCAAAAA+GGG | - | tig0022269:36506-36525 | None:intergenic | 45.0% | |
| ACCAAATGCTCGGCTCAAAA+AGG | - | tig0022269:36507-36526 | None:intergenic | 45.0% | |
| ACAAGAGTAAGCACCCTAGA+GGG | - | tig0022269:36644-36663 | None:intergenic | 45.0% | |
| TACAAGAGTAAGCACCCTAG+AGG | - | tig0022269:36645-36664 | None:intergenic | 45.0% | |
| GCTAGTGTTCCAACTGCAAA+TGG | - | tig0022269:36674-36693 | None:intergenic | 45.0% | |
| ACATCTGGTAAAGGAGGGAT+TGG | + | tig0022269:36897-36916 | Msa1398550:CDS | 45.0% | |
| GGAGGGATTGGAACATTCAT+TGG | + | tig0022269:36909-36928 | Msa1398550:CDS | 45.0% | |
| TTAGCAGATGCTCATGCACA+AGG | + | tig0022269:36960-36979 | Msa1398550:CDS | 45.0% | |
| CATGCACAAGGAGGAATGAT+TGG | + | tig0022269:36972-36991 | Msa1398550:CDS | 45.0% | |
| GTTCAGGTCAGCATCATCAA+TGG | + | tig0022269:37023-37042 | Msa1398550:intron | 45.0% | |
| AGCATCAGGTGCTCTAACAT+CGG | + | tig0022269:37303-37322 | Msa1398550:CDS | 45.0% | |
| !!! | CTTCGGATGCTGCTTTTGAA+CGG | - | tig0022269:37676-37695 | None:intergenic | 45.0% |
| GTTCAAAAGCAGCATCCGAA+GGG | + | tig0022269:37675-37694 | Msa1398550:CDS | 45.0% | |
| GTACTTCTCGAAATGAGGTC+TGG | - | tig0022269:37739-37758 | None:intergenic | 45.0% | |
| CTTCACCTTATAGCCTTTCG+GGG | - | tig0022269:38824-38843 | None:intergenic | 45.0% | |
| GGGACCTGAACAAAATGCAT+TGG | + | tig0022269:38935-38954 | Msa1398550:intron | 45.0% | |
| TTGCAGGGGTAACACTTGAT+TGG | + | tig0022269:38994-39013 | Msa1398550:CDS | 45.0% | |
| !!! | TTATTTAATATATTTTTCTT+TGG | + | tig0022269:36571-36590 | Msa1398550:intron | 5.0% |
| ATCACCTCAATACGTGGTGG+AGG | - | tig0022269:36042-36061 | None:intergenic | 50.0% | |
| ACATCAGACAACCTAACGCC+GGG | - | tig0022269:36423-36442 | None:intergenic | 50.0% | |
| CACATCAGACAACCTAACGC+CGG | - | tig0022269:36424-36443 | None:intergenic | 50.0% | |
| !! | CCCTTTTTGAGCCGAGCATT+TGG | + | tig0022269:36503-36522 | Msa1398550:intron | 50.0% |
| TGACCCAGCAACCAAATGCT+CGG | - | tig0022269:36517-36536 | None:intergenic | 50.0% | |
| !!! | AGTTTTAGACGCCTCGGCAA+AGG | - | tig0022269:37142-37161 | None:intergenic | 50.0% |
| !! | GTGCTCTAACATCGGCTTTG+AGG | + | tig0022269:37311-37330 | Msa1398550:CDS | 50.0% |
| ! | TCTAAGGACGGACTTCGCAA+AGG | + | tig0022269:37361-37380 | Msa1398550:CDS | 50.0% |
| CAGCACTCTGATGCTTAGCA+TGG | + | tig0022269:37396-37415 | Msa1398550:intron | 50.0% | |
| CGTTCAAAAGCAGCATCCGA+AGG | + | tig0022269:37674-37693 | Msa1398550:CDS | 50.0% | |
| AAGTGAGAACACAGACAGCG+AGG | - | tig0022269:38798-38817 | None:intergenic | 50.0% | |
| TTCTGCCCCGAAAGGCTATA+AGG | + | tig0022269:38816-38835 | Msa1398550:CDS | 50.0% | |
| TGAGCCTCCACCACGTATTG+AGG | + | tig0022269:36035-36054 | Msa1398550:CDS | 55.0% | |
| !!! | CTGGTTTTATGCCCGGCGTT+AGG | + | tig0022269:36409-36428 | Msa1398550:intron | 55.0% |
| TGAGCCGAGCATTTGGTTGC+TGG | + | tig0022269:36510-36529 | Msa1398550:intron | 55.0% | |
| GAGCCGAGCATTTGGTTGCT+GGG | + | tig0022269:36511-36530 | Msa1398550:intron | 55.0% | |
| GAGCATTTGGTTGCTGGGTC+AGG | + | tig0022269:36516-36535 | Msa1398550:intron | 55.0% | |
| GCAGATGCTCATGCACAAGG+AGG | + | tig0022269:36963-36982 | Msa1398550:CDS | 55.0% | |
| TCTGGATTCCAGCTGCAGCA+AGG | - | tig0022269:37721-37740 | None:intergenic | 55.0% | |
| ACAGACAGCGAGGTAGCCAT+TGG | - | tig0022269:38788-38807 | None:intergenic | 55.0% | |
| GTTCTCACTTCTGCCCCGAA+AGG | + | tig0022269:38808-38827 | Msa1398550:CDS | 55.0% | |
| TCAGCTGACCTTGCTGCAGC+TGG | + | tig0022269:37710-37729 | Msa1398550:CDS | 60.0% | |
| CTGATGCTGCAGCACCGCCA+AGG | - | tig0022269:37291-37310 | None:intergenic | 65.0% | |
| !! | CTTGGCGGTGCTGCAGCATC+AGG | + | tig0022269:37289-37308 | Msa1398550:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022269 | gene | 36024 | 39043 | 36024 | ID=Msa1398550;Name=Msa1398550 |
| tig0022269 | mRNA | 36024 | 39043 | 36024 | ID=Msa1398550-mRNA-1;Parent=Msa1398550;Name=Msa1398550-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0|0|1|1|1|9|0|414 |
| tig0022269 | exon | 36024 | 36056 | 36024 | ID=Msa1398550-mRNA-1:exon:16707;Parent=Msa1398550-mRNA-1 |
| tig0022269 | exon | 36181 | 36285 | 36181 | ID=Msa1398550-mRNA-1:exon:16708;Parent=Msa1398550-mRNA-1 |
| tig0022269 | exon | 36632 | 36787 | 36632 | ID=Msa1398550-mRNA-1:exon:16709;Parent=Msa1398550-mRNA-1 |
| tig0022269 | exon | 36885 | 37028 | 36885 | ID=Msa1398550-mRNA-1:exon:16710;Parent=Msa1398550-mRNA-1 |
| tig0022269 | exon | 37283 | 37388 | 37283 | ID=Msa1398550-mRNA-1:exon:16711;Parent=Msa1398550-mRNA-1 |
| tig0022269 | exon | 37582 | 37754 | 37582 | ID=Msa1398550-mRNA-1:exon:16712;Parent=Msa1398550-mRNA-1 |
| tig0022269 | exon | 37844 | 38004 | 37844 | ID=Msa1398550-mRNA-1:exon:16713;Parent=Msa1398550-mRNA-1 |
| tig0022269 | exon | 38579 | 38837 | 38579 | ID=Msa1398550-mRNA-1:exon:16714;Parent=Msa1398550-mRNA-1 |
| tig0022269 | exon | 38936 | 39043 | 38936 | ID=Msa1398550-mRNA-1:exon:16715;Parent=Msa1398550-mRNA-1 |
| tig0022269 | CDS | 36024 | 36056 | 36024 | ID=Msa1398550-mRNA-1:cds;Parent=Msa1398550-mRNA-1 |
| tig0022269 | CDS | 36181 | 36285 | 36181 | ID=Msa1398550-mRNA-1:cds;Parent=Msa1398550-mRNA-1 |
| tig0022269 | CDS | 36632 | 36787 | 36632 | ID=Msa1398550-mRNA-1:cds;Parent=Msa1398550-mRNA-1 |
| tig0022269 | CDS | 36885 | 37028 | 36885 | ID=Msa1398550-mRNA-1:cds;Parent=Msa1398550-mRNA-1 |
| tig0022269 | CDS | 37283 | 37388 | 37283 | ID=Msa1398550-mRNA-1:cds;Parent=Msa1398550-mRNA-1 |
| tig0022269 | CDS | 37582 | 37754 | 37582 | ID=Msa1398550-mRNA-1:cds;Parent=Msa1398550-mRNA-1 |
| tig0022269 | CDS | 37844 | 38004 | 37844 | ID=Msa1398550-mRNA-1:cds;Parent=Msa1398550-mRNA-1 |
| tig0022269 | CDS | 38579 | 38837 | 38579 | ID=Msa1398550-mRNA-1:cds;Parent=Msa1398550-mRNA-1 |
| tig0022269 | CDS | 38936 | 39043 | 38936 | ID=Msa1398550-mRNA-1:cds;Parent=Msa1398550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
