Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0677910 | KEH17554.1 | 97.826 | 414 | 9 | 0 | 1 | 414 | 1 | 414 | 0.0 | 813 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0677910 | sp|Q9M0Y3|ENT3_ARATH | 70.244 | 410 | 121 | 1 | 3 | 412 | 6 | 414 | 0.0 | 600 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0677910 | A0A072TIZ8 | 97.826 | 414 | 9 | 0 | 1 | 414 | 1 | 414 | 0.0 | 813 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0677910 | Msa1398550 | 0.943828 | 5.939433e-103 | -8.615850e-47 |
| Msa0543170 | Msa0677910 | 0.831801 | 1.358804e-55 | -8.615850e-47 |
| Msa0599070 | Msa0677910 | 0.839624 | 1.417952e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0677910 | MtrunA17_Chr4g0022871 | 97.826 | 414 | 9 | 0 | 1 | 414 | 1 | 414 | 0.0 | 813 |
| Msa0677910 | MtrunA17_Chr2g0323381 | 82.609 | 414 | 72 | 0 | 1 | 414 | 1 | 414 | 0.0 | 682 |
| Msa0677910 | MtrunA17_Chr4g0022861 | 81.407 | 398 | 74 | 0 | 17 | 414 | 1 | 398 | 0.0 | 666 |
| Msa0677910 | MtrunA17_Chr2g0280971 | 68.447 | 412 | 128 | 2 | 3 | 412 | 30 | 441 | 0.0 | 572 |
| Msa0677910 | MtrunA17_Chr2g0280991 | 69.118 | 408 | 124 | 1 | 7 | 412 | 14 | 421 | 0.0 | 567 |
| Msa0677910 | MtrunA17_Chr4g0022801 | 75.000 | 396 | 71 | 1 | 47 | 414 | 10 | 405 | 0.0 | 560 |
| Msa0677910 | MtrunA17_Chr8g0335821 | 58.127 | 363 | 150 | 1 | 52 | 412 | 2 | 364 | 1.66e-136 | 395 |
| Msa0677910 | MtrunA17_Chr1g0184961 | 77.559 | 254 | 45 | 2 | 47 | 293 | 104 | 352 | 2.12e-133 | 387 |
| Msa0677910 | MtrunA17_Chr4g0020331 | 32.274 | 409 | 249 | 8 | 11 | 410 | 26 | 415 | 6.28e-58 | 195 |
| Msa0677910 | MtrunA17_Chr3g0103741 | 30.488 | 410 | 255 | 9 | 11 | 410 | 34 | 423 | 2.40e-48 | 170 |
| Msa0677910 | MtrunA17_Chr2g0280961 | 57.047 | 149 | 60 | 2 | 224 | 368 | 83 | 231 | 7.79e-45 | 155 |
| Msa0677910 | MtrunA17_Chr2g0280961 | 56.180 | 89 | 39 | 0 | 52 | 140 | 2 | 90 | 5.06e-25 | 102 |
| Msa0677910 | MtrunA17_Chr4g0063911 | 27.423 | 423 | 264 | 8 | 1 | 410 | 6 | 398 | 5.36e-42 | 152 |
| Msa0677910 | MtrunA17_Chr1g0184971 | 79.365 | 63 | 13 | 0 | 296 | 358 | 2 | 64 | 4.65e-29 | 108 |
| Msa0677910 | MtrunA17_Chr4g0022811 | 76.744 | 43 | 10 | 0 | 4 | 46 | 2 | 44 | 7.47e-18 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0677910 | AT4G05120.1 | 70.244 | 410 | 121 | 1 | 3 | 412 | 6 | 414 | 0.0 | 600 |
| Msa0677910 | AT4G05120.2 | 70.244 | 410 | 121 | 1 | 3 | 412 | 6 | 414 | 0.0 | 600 |
| Msa0677910 | AT4G05110.3 | 65.610 | 410 | 140 | 1 | 3 | 412 | 6 | 414 | 0.0 | 561 |
| Msa0677910 | AT4G05110.1 | 65.610 | 410 | 140 | 1 | 3 | 412 | 6 | 414 | 0.0 | 561 |
| Msa0677910 | AT4G05110.2 | 65.366 | 410 | 141 | 1 | 3 | 412 | 6 | 414 | 0.0 | 559 |
| Msa0677910 | AT4G05140.1 | 64.146 | 410 | 147 | 0 | 3 | 412 | 6 | 415 | 0.0 | 553 |
| Msa0677910 | AT3G09990.1 | 63.951 | 405 | 145 | 1 | 11 | 414 | 13 | 417 | 0.0 | 541 |
| Msa0677910 | AT4G05130.1 | 62.136 | 412 | 155 | 1 | 3 | 414 | 6 | 416 | 0.0 | 541 |
| Msa0677910 | AT1G61630.1 | 60.870 | 414 | 153 | 2 | 4 | 412 | 5 | 414 | 8.09e-180 | 507 |
| Msa0677910 | AT1G70330.1 | 32.067 | 421 | 253 | 9 | 2 | 410 | 51 | 450 | 1.36e-55 | 190 |
| Msa0677910 | AT1G02630.1 | 28.928 | 401 | 248 | 7 | 16 | 410 | 20 | 389 | 1.62e-46 | 164 |
| Msa0677910 | AT1G02630.2 | 29.798 | 198 | 137 | 2 | 16 | 212 | 20 | 216 | 3.92e-24 | 102 |
Find 89 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCACCTTATAGCCTTTC+GGG | 0.166232 | 4_4:+32490163 | None:intergenic |
| ACAAGGAAACGGATTCTATT+TGG | 0.191611 | 4_4:-32492260 | Msa0677910:CDS |
| AGGAAATAAGCAATTGTTAT+TGG | 0.204429 | 4_4:-32491109 | Msa0677910:CDS |
| CTTGATTGGTTATGGTTAAT+AGG | 0.205341 | 4_4:-32489977 | Msa0677910:CDS |
| TACTTCACAATTGGTAATTT+AGG | 0.225152 | 4_4:+32491338 | None:intergenic |
| TTACTATGTTTATTTATTTC+CGG | 0.229116 | 4_4:-32492721 | Msa0677910:intron |
| TTCTTCACCTTATAGCCTTT+CGG | 0.245719 | 4_4:+32490162 | None:intergenic |
| GATAATGTTGACATCTTTCT+TGG | 0.252333 | 4_4:-32490229 | Msa0677910:CDS |
| ATCTTGGTATTGTTTCTTCT+TGG | 0.254429 | 4_4:-32490022 | Msa0677910:CDS |
| GTCTGTTGGCTTCTTGGAAA+TGG | 0.258111 | 4_4:-32492783 | Msa0677910:CDS |
| ATGCTGACCTGAACAAATTC+TGG | 0.275263 | 4_4:+32491971 | None:intergenic |
| AGCAATATTTGAAAATTCTA+AGG | 0.295643 | 4_4:-32491640 | Msa0677910:CDS |
| CTCAAATTGTCTTAATTCTT+CGG | 0.301282 | 4_4:+32491137 | None:intergenic |
| ATAGTGGTCTGTTGGCTTCT+TGG | 0.306364 | 4_4:-32492789 | Msa0677910:CDS |
| CTTGGCGGTGCTGCAGCATC+AGG | 0.325226 | 4_4:-32491696 | Msa0677910:CDS |
| TAATTGCTATGTATAATGTA+TGG | 0.328838 | 4_4:-32490392 | Msa0677910:CDS |
| TGCATAGTTAGTGGTGCATT+TGG | 0.338224 | 4_4:-32492049 | Msa0677910:CDS |
| GGGTAACACTTGATTGGTTA+TGG | 0.340185 | 4_4:-32489985 | Msa0677910:CDS |
| TTCTGCCCCGAAAGGCTATA+AGG | 0.352392 | 4_4:-32490169 | Msa0677910:intron |
| TTGGTATTGTTTCTTCTTGG+AGG | 0.389863 | 4_4:-32490019 | Msa0677910:CDS |
| TCTGTTGGCTTCTTGGAAAT+GGG | 0.394950 | 4_4:-32492782 | Msa0677910:CDS |
| ATAATGTTGACATCTTTCTT+GGG | 0.400944 | 4_4:-32490228 | Msa0677910:CDS |
| TCAGCTGACCTTGCTGCAGC+TGG | 0.400973 | 4_4:-32491275 | Msa0677910:CDS |
| GGAGGGATTGGAACATTCAT+TGG | 0.406478 | 4_4:-32492076 | Msa0677910:CDS |
| AAATGCATTGGGAAATATCT+TGG | 0.414446 | 4_4:-32490038 | Msa0677910:CDS |
| TTGCAGGGGTAACACTTGAT+TGG | 0.414767 | 4_4:-32489991 | Msa0677910:CDS |
| ACTGATCAAAATCTTGAAGT+TGG | 0.417735 | 4_4:-32490346 | Msa0677910:CDS |
| CATGAATCCAGAATTTGTTC+AGG | 0.422496 | 4_4:-32491978 | Msa0677910:intron |
| GAACGGTAGTACTTCACAAT+TGG | 0.426412 | 4_4:+32491329 | None:intergenic |
| TTATTGTTGTAGTCTTTCCT+TGG | 0.427988 | 4_4:-32491714 | Msa0677910:intron |
| GTGCTCTAACATCGGCTTTG+AGG | 0.429741 | 4_4:-32491674 | Msa0677910:CDS |
| TACAATTAAAACAGCCAAAA+CGG | 0.430063 | 4_4:+32492217 | None:intergenic |
| AAGGTCAGCTGAAACAGTTT+TGG | 0.431717 | 4_4:+32491286 | None:intergenic |
| CATGCACAAGGAGGAATGAT+TGG | 0.442301 | 4_4:-32492013 | Msa0677910:CDS |
| AAGCTCAAACAAGGTTGATA+AGG | 0.443767 | 4_4:+32491391 | None:intergenic |
| TAGTTGGATTTAGCAACATC+TGG | 0.449427 | 4_4:-32492103 | Msa0677910:CDS |
| TATAATGTATGGGATCTTAT+CGG | 0.459552 | 4_4:-32490381 | Msa0677910:CDS |
| ATTGGTATATGCATAGTTAG+TGG | 0.468620 | 4_4:-32492058 | Msa0677910:CDS |
| TTGTTGTAGTCTTTCCTTGG+CGG | 0.468717 | 4_4:-32491711 | Msa0677910:intron |
| GGGAAAATATACTGCAATAG+TGG | 0.484444 | 4_4:-32492805 | Msa0677910:CDS |
| ACATCTGGTAAAGGAGGGAT+TGG | 0.484610 | 4_4:-32492088 | Msa0677910:CDS |
| GATACCGGATTACACAGTTT+AGG | 0.487502 | 4_4:-32491009 | Msa0677910:CDS |
| AATTGCTATGTATAATGTAT+GGG | 0.488467 | 4_4:-32490391 | Msa0677910:CDS |
| GGGACCTGAACAAAATGCAT+TGG | 0.488651 | 4_4:-32490050 | Msa0677910:CDS |
| TGGTTATGGTTAATAGGTAA+AGG | 0.488739 | 4_4:-32489971 | Msa0677910:CDS |
| CTGACATTGTCTATATTCCC+TGG | 0.495635 | 4_4:-32491045 | Msa0677910:CDS |
| GTACTTCTCGAAATGAGGTC+TGG | 0.497951 | 4_4:+32491249 | None:intergenic |
| AGCAATTCTTACTTACTATG+AGG | 0.505159 | 4_4:-32492294 | Msa0677910:CDS |
| GGACCTGAACAAAATGCATT+GGG | 0.505661 | 4_4:-32490049 | Msa0677910:CDS |
| GCTAGTGTTCCAACTGCAAA+TGG | 0.506628 | 4_4:+32492314 | None:intergenic |
| TGCAGAAATATCATCCCTCT+AGG | 0.522851 | 4_4:-32492358 | Msa0677910:intron |
| GATTTAGCAACATCTGGTAA+AGG | 0.531613 | 4_4:-32492097 | Msa0677910:CDS |
| AAACCGTACTTCTCGAAATG+AGG | 0.538163 | 4_4:+32491244 | None:intergenic |
| TGTGCCTAAACTGTGTAATC+CGG | 0.542014 | 4_4:+32491005 | None:intergenic |
| CAAAGTATGGTACTCAAGGT+TGG | 0.542078 | 4_4:-32490254 | Msa0677910:CDS |
| ACAGACAGCGAGGTAGCCAT+TGG | 0.547272 | 4_4:+32490200 | None:intergenic |
| ATTCTGGATTCATGTATGAC+AGG | 0.549368 | 4_4:+32491987 | None:intergenic |
| ATACTGCAATAGTGGTCTGT+TGG | 0.551193 | 4_4:-32492797 | Msa0677910:CDS |
| CTGATGCTGCAGCACCGCCA+AGG | 0.552472 | 4_4:+32491697 | None:intergenic |
| TGAGCCTCCACCACGTATTG+AGG | 0.554558 | 4_4:-32492950 | Msa0677910:intron |
| TATGGTTAATAGGTAAAGGA+TGG | 0.554780 | 4_4:-32489967 | Msa0677910:CDS |
| GTATATCAGCCATTTGCAGT+TGG | 0.555669 | 4_4:-32492323 | Msa0677910:CDS |
| AAATTGTCTTAATTCTTCGG+TGG | 0.562541 | 4_4:+32491140 | None:intergenic |
| TCTTTCTTGGGGATATCCAA+TGG | 0.562937 | 4_4:-32490216 | Msa0677910:CDS |
| TTTGCAGTGAAATAAAATGC+TGG | 0.563621 | 4_4:+32490273 | None:intergenic |
| TAATGTTGACATCTTTCTTG+GGG | 0.567874 | 4_4:-32490227 | Msa0677910:CDS |
| ACTGCAAAGTATGGTACTCA+AGG | 0.567878 | 4_4:-32490258 | Msa0677910:CDS |
| TTAAGACAATTTGAGCGCAA+AGG | 0.573253 | 4_4:-32491129 | Msa0677910:CDS |
| AGCATCAGGTGCTCTAACAT+CGG | 0.577110 | 4_4:-32491682 | Msa0677910:CDS |
| ATCACCTCAATACGTGGTGG+AGG | 0.577633 | 4_4:+32492946 | None:intergenic |
| TTAGCAACATCTGGTAAAGG+AGG | 0.580672 | 4_4:-32492094 | Msa0677910:CDS |
| CGTTCAAAAGCAGCATCCGA+AGG | 0.583519 | 4_4:-32491311 | Msa0677910:CDS |
| TACAAGAGTAAGCACCCTAG+AGG | 0.583761 | 4_4:+32492343 | None:intergenic |
| ATATTTGAAAATTCTAAGGA+CGG | 0.599191 | 4_4:-32491636 | Msa0677910:CDS |
| GTTCTCACTTCTGCCCCGAA+AGG | 0.606657 | 4_4:-32490177 | Msa0677910:CDS |
| CTTCACCTTATAGCCTTTCG+GGG | 0.611942 | 4_4:+32490164 | None:intergenic |
| TAGCAACATCTGGTAAAGGA+GGG | 0.612233 | 4_4:-32492093 | Msa0677910:CDS |
| AACACAAAGAAGCTCAAACA+AGG | 0.615784 | 4_4:+32491382 | None:intergenic |
| TTAGCAGATGCTCATGCACA+AGG | 0.620251 | 4_4:-32492025 | Msa0677910:CDS |
| GCAGAAATATCATCCCTCTA+GGG | 0.623345 | 4_4:-32492357 | Msa0677910:intron |
| GTTCAAAAGCAGCATCCGAA+GGG | 0.625870 | 4_4:-32491310 | Msa0677910:CDS |
| ACAAGAGTAAGCACCCTAGA+GGG | 0.631895 | 4_4:+32492344 | None:intergenic |
| TCTAAGGACGGACTTCGCAA+AGG | 0.638434 | 4_4:-32491624 | Msa0677910:CDS |
| GATTACACAGTTTAGGCACA+TGG | 0.648704 | 4_4:-32491002 | Msa0677910:intron |
| TCTGGATTCCAGCTGCAGCA+AGG | 0.649624 | 4_4:+32491267 | None:intergenic |
| TATATCACCTCAATACGTGG+TGG | 0.675337 | 4_4:+32492943 | None:intergenic |
| ATATATATCACCTCAATACG+TGG | 0.678311 | 4_4:+32492940 | None:intergenic |
| AAGTGAGAACACAGACAGCG+AGG | 0.688797 | 4_4:+32490190 | None:intergenic |
| GCAGATGCTCATGCACAAGG+AGG | 0.707799 | 4_4:-32492022 | Msa0677910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAGCATATATAATTT+CGG | + | chr4_4:32490041-32490060 | None:intergenic | 10.0% |
| !!! | ATATGCTTTTTTTTTTTTGA+AGG | - | chr4_4:32490048-32490067 | Msa0677910:CDS | 15.0% |
| !!! | TTAAATTATTTTTCATTTGC+AGG | - | chr4_4:32490099-32490118 | Msa0677910:intron | 15.0% |
| !!! | TAAATTATTTTTCATTTGCA+GGG | - | chr4_4:32490100-32490119 | Msa0677910:intron | 15.0% |
| !! | TTACTATGTTTATTTATTTC+CGG | - | chr4_4:32490204-32490223 | Msa0677910:CDS | 15.0% |
| !! | AAGTTAACAAAAAAATTAAC+AGG | + | chr4_4:32490737-32490756 | None:intergenic | 15.0% |
| !!! | AAATTGATTTCTTTTAGTAT+CGG | - | chr4_4:32491425-32491444 | Msa0677910:intron | 15.0% |
| !! | TCATTAGTTATTACTTATTT+CGG | + | chr4_4:32492151-32492170 | None:intergenic | 15.0% |
| !!! | AATGATATTTTAAGAAGTAA+TGG | - | chr4_4:32492390-32492409 | Msa0677910:intron | 15.0% |
| !!! | TGTATGTTTTTTACTTTTTT+AGG | - | chr4_4:32492854-32492873 | Msa0677910:intron | 15.0% |
| !!! | GTATGTTTTTTACTTTTTTA+GGG | - | chr4_4:32492855-32492874 | Msa0677910:intron | 15.0% |
| !! | CAAAATAAATGATGTGTAAT+AGG | + | chr4_4:32490325-32490344 | None:intergenic | 20.0% |
| !!! | ACATCATTTATTTTGTAATC+TGG | - | chr4_4:32490330-32490349 | Msa0677910:CDS | 20.0% |
| !! | TATAACAGATATAACAAAAG+CGG | + | chr4_4:32490420-32490439 | None:intergenic | 20.0% |
| !! | AGCAATATTTGAAAATTCTA+AGG | - | chr4_4:32491285-32491304 | Msa0677910:CDS | 20.0% |
| !!! | ATATTTGAAAATTCTAAGGA+CGG | - | chr4_4:32491289-32491308 | Msa0677910:CDS | 20.0% |
| !! | CAAAAATGAAAAACATATCT+CGG | - | chr4_4:32492067-32492086 | Msa0677910:CDS | 20.0% |
| !! | AATTGATATTTGAATGTGTT+GGG | + | chr4_4:32492267-32492286 | None:intergenic | 20.0% |
| !! | AAATTGATATTTGAATGTGT+TGG | + | chr4_4:32492268-32492287 | None:intergenic | 20.0% |
| !! | TTGATATTTCCATTTATTAC+AGG | - | chr4_4:32492497-32492516 | Msa0677910:intron | 20.0% |
| !! | TAATTGCTATGTATAATGTA+TGG | - | chr4_4:32492533-32492552 | Msa0677910:intron | 20.0% |
| !! | AATTGCTATGTATAATGTAT+GGG | - | chr4_4:32492534-32492553 | Msa0677910:intron | 20.0% |
| !! | ATTTAAATAACTCTAAACCT+CGG | + | chr4_4:32492812-32492831 | None:intergenic | 20.0% |
| ! | CAAAAATCAATACAAGGAAA+CGG | - | chr4_4:32490654-32490673 | Msa0677910:intron | 25.0% |
| ! | TACAATTAAAACAGCCAAAA+CGG | + | chr4_4:32490711-32490730 | None:intergenic | 25.0% |
| ! | ACAATGCTAACTTTGATATT+CGG | - | chr4_4:32491014-32491033 | Msa0677910:CDS | 25.0% |
| ! | TTATATAACGATTGCAATTG+CGG | - | chr4_4:32491103-32491122 | Msa0677910:CDS | 25.0% |
| !! | ACATATGCAACTCTTTTTAA+AGG | - | chr4_4:32491186-32491205 | Msa0677910:intron | 25.0% |
| ! | TGGATATCTTTATGAATTGT+AGG | + | chr4_4:32491453-32491472 | None:intergenic | 25.0% |
| !! | TACTTCACAATTGGTAATTT+AGG | + | chr4_4:32491590-32491609 | None:intergenic | 25.0% |
| !! | CTTTTCTTTTCAATTTCTCA+CGG | - | chr4_4:32491704-32491723 | Msa0677910:CDS | 25.0% |
| !!! | GACTAATTTGTGTTTTTTTC+AGG | - | chr4_4:32491762-32491781 | Msa0677910:intron | 25.0% |
| ! | CTCAAATTGTCTTAATTCTT+CGG | + | chr4_4:32491791-32491810 | None:intergenic | 25.0% |
| ! | AGGAAATAAGCAATTGTTAT+TGG | - | chr4_4:32491816-32491835 | Msa0677910:intron | 25.0% |
| ! | TATCTTCTGATAAAAATCCA+GGG | + | chr4_4:32491900-32491919 | None:intergenic | 25.0% |
| ! | GATTATCAAATACACATTTG+AGG | - | chr4_4:32492124-32492143 | Msa0677910:intron | 25.0% |
| ! | TTATCTTTCGCTATTCAATT+TGG | + | chr4_4:32492190-32492209 | None:intergenic | 25.0% |
| ! | AATAGCGAAAGATAAATTTG+AGG | - | chr4_4:32492195-32492214 | Msa0677910:intron | 25.0% |
| ! | ATATCATTCCAATATCTATC+TGG | + | chr4_4:32492378-32492397 | None:intergenic | 25.0% |
| ! | TGTATGTTCAATTTCAAAAC+TGG | - | chr4_4:32492474-32492493 | Msa0677910:intron | 25.0% |
| ! | TATAATGTATGGGATCTTAT+CGG | - | chr4_4:32492544-32492563 | Msa0677910:intron | 25.0% |
| !!! | TTTTATTTCACTGCAAAGTA+TGG | - | chr4_4:32492658-32492677 | Msa0677910:intron | 25.0% |
| ! | ATAATGTTGACATCTTTCTT+GGG | - | chr4_4:32492697-32492716 | Msa0677910:intron | 25.0% |
| !!! | GAAGTATTCTAGTTTCTTAA+AGG | + | chr4_4:32492790-32492809 | None:intergenic | 25.0% |
| ATATATATCACCTCAATACG+TGG | + | chr4_4:32489988-32490007 | None:intergenic | 30.0% | |
| TCAGAAAGTAGATACATTAC+CGG | + | chr4_4:32490226-32490245 | None:intergenic | 30.0% | |
| TAACCAGAGTGAATAGTTAA+CGG | + | chr4_4:32490270-32490289 | None:intergenic | 30.0% | |
| ! | TATTTCTGCACAAATAGGAA+AGG | + | chr4_4:32490557-32490576 | None:intergenic | 30.0% |
| ! | GATGATATTTCTGCACAAAT+AGG | + | chr4_4:32490562-32490581 | None:intergenic | 30.0% |
| AGCAATTCTTACTTACTATG+AGG | - | chr4_4:32490631-32490650 | Msa0677910:intron | 30.0% | |
| ATGAGGCAAAAATCAATACA+AGG | - | chr4_4:32490648-32490667 | Msa0677910:intron | 30.0% | |
| !! | TGGATACACACTATTTTTCT+TGG | - | chr4_4:32490685-32490704 | Msa0677910:intron | 30.0% |
| ATTCCTTCAAATTGTGCATT+TGG | - | chr4_4:32490759-32490778 | Msa0677910:intron | 30.0% | |
| TTCCTTCAAATTGTGCATTT+GGG | - | chr4_4:32490760-32490779 | Msa0677910:intron | 30.0% | |
| ATTGGTATATGCATAGTTAG+TGG | - | chr4_4:32490867-32490886 | Msa0677910:intron | 30.0% | |
| CAATGCTAACTTTGATATTC+GGG | - | chr4_4:32491015-32491034 | Msa0677910:CDS | 30.0% | |
| !! | GCATAAAATTGTTTCTGCAT+GGG | + | chr4_4:32491060-32491079 | None:intergenic | 30.0% |
| !!! | TATAAAAGTTTTAGACGCCT+CGG | + | chr4_4:32491088-32491107 | None:intergenic | 30.0% |
| AAAAGAGTTGCATATGTTGA+AGG | + | chr4_4:32491183-32491202 | None:intergenic | 30.0% | |
| TTATTGTTGTAGTCTTTCCT+TGG | - | chr4_4:32491211-32491230 | Msa0677910:intron | 30.0% | |
| CAAACTGAATCTCAATAGTA+AGG | + | chr4_4:32491735-32491754 | None:intergenic | 30.0% | |
| AAATTGTCTTAATTCTTCGG+TGG | + | chr4_4:32491788-32491807 | None:intergenic | 30.0% | |
| GTATCTTCTGATAAAAATCC+AGG | + | chr4_4:32491901-32491920 | None:intergenic | 30.0% | |
| ! | GGATTTTTATCAGAAGATAC+CGG | - | chr4_4:32491901-32491920 | Msa0677910:intron | 30.0% |
| !!! | ATCCTTTCATCCTTTGTTTT+TGG | - | chr4_4:32491962-32491981 | Msa0677910:intron | 30.0% |
| AACCAAAAACAAAGGATGAA+AGG | + | chr4_4:32491967-32491986 | None:intergenic | 30.0% | |
| CCAAAAAGAACCAAAAACAA+AGG | + | chr4_4:32491975-32491994 | None:intergenic | 30.0% | |
| !!! | CCTTTGTTTTTGGTTCTTTT+TGG | - | chr4_4:32491972-32491991 | Msa0677910:intron | 30.0% |
| TTTCAATCCCTAAATGTATG+TGG | - | chr4_4:32492019-32492038 | Msa0677910:CDS | 30.0% | |
| ATATCTCACCAGATAGATAT+TGG | - | chr4_4:32492367-32492386 | Msa0677910:intron | 30.0% | |
| !! | AAAACAACAAAAGTGGGTTA+AGG | - | chr4_4:32492439-32492458 | Msa0677910:intron | 30.0% |
| !! | AACTTCAAGATTTTGATCAG+TGG | + | chr4_4:32492580-32492599 | None:intergenic | 30.0% |
| ACTGATCAAAATCTTGAAGT+TGG | - | chr4_4:32492579-32492598 | Msa0677910:intron | 30.0% | |
| TTTGCAGTGAAATAAAATGC+TGG | + | chr4_4:32492655-32492674 | None:intergenic | 30.0% | |
| GATAATGTTGACATCTTTCT+TGG | - | chr4_4:32492696-32492715 | Msa0677910:intron | 30.0% | |
| TAATGTTGACATCTTTCTTG+GGG | - | chr4_4:32492698-32492717 | Msa0677910:intron | 30.0% | |
| AAATGCATTGGGAAATATCT+TGG | - | chr4_4:32492887-32492906 | Msa0677910:intron | 30.0% | |
| ! | ATCTTGGTATTGTTTCTTCT+TGG | - | chr4_4:32492903-32492922 | Msa0677910:intron | 30.0% |
| ! | CTTGATTGGTTATGGTTAAT+AGG | - | chr4_4:32492948-32492967 | Msa0677910:intron | 30.0% |
| TGGTTATGGTTAATAGGTAA+AGG | - | chr4_4:32492954-32492973 | Msa0677910:CDS | 30.0% | |
| TATGGTTAATAGGTAAAGGA+TGG | - | chr4_4:32492958-32492977 | Msa0677910:CDS | 30.0% | |
| GGGAAAATATACTGCAATAG+TGG | - | chr4_4:32490120-32490139 | Msa0677910:intron | 35.0% | |
| TATCCGTTAACTATTCACTC+TGG | - | chr4_4:32490264-32490283 | Msa0677910:CDS | 35.0% | |
| !!! | TTGTAATCTGGTTTTATGCC+CGG | - | chr4_4:32490342-32490361 | Msa0677910:CDS | 35.0% |
| CTGATGTGTAGATGTTTGTT+AGG | - | chr4_4:32490376-32490395 | Msa0677910:CDS | 35.0% | |
| ! | ACAAGGAAACGGATTCTATT+TGG | - | chr4_4:32490665-32490684 | Msa0677910:intron | 35.0% |
| !! | ACTATTTTTCTTGGCCGTTT+TGG | - | chr4_4:32490694-32490713 | Msa0677910:intron | 35.0% |
| AACCCAAATGCACAATTTGA+AGG | + | chr4_4:32490765-32490784 | None:intergenic | 35.0% | |
| TAGTTGGATTTAGCAACATC+TGG | - | chr4_4:32490822-32490841 | Msa0677910:intron | 35.0% | |
| GATTTAGCAACATCTGGTAA+AGG | - | chr4_4:32490828-32490847 | Msa0677910:intron | 35.0% | |
| ATTCTGGATTCATGTATGAC+AGG | + | chr4_4:32490941-32490960 | None:intergenic | 35.0% | |
| ! | CATGAATCCAGAATTTGTTC+AGG | - | chr4_4:32490947-32490966 | Msa0677910:intron | 35.0% |
| !! | GGCATAAAATTGTTTCTGCA+TGG | + | chr4_4:32491061-32491080 | None:intergenic | 35.0% |
| ATCCATGATCATGATTCATG+TGG | - | chr4_4:32491468-32491487 | Msa0677910:intron | 35.0% | |
| TACCACATGAATCATGATCA+TGG | + | chr4_4:32491473-32491492 | None:intergenic | 35.0% | |
| !! | AAGCTCAAACAAGGTTGATA+AGG | + | chr4_4:32491537-32491556 | None:intergenic | 35.0% |
| AACACAAAGAAGCTCAAACA+AGG | + | chr4_4:32491546-32491565 | None:intergenic | 35.0% | |
| TTAAGACAATTTGAGCGCAA+AGG | - | chr4_4:32491796-32491815 | Msa0677910:intron | 35.0% | |
| GTATCCACCACATACATTTA+GGG | + | chr4_4:32492029-32492048 | None:intergenic | 35.0% | |
| AGTATCCACCACATACATTT+AGG | + | chr4_4:32492030-32492049 | None:intergenic | 35.0% | |
| !! | AATGTATGTGGTGGATACTA+TGG | - | chr4_4:32492031-32492050 | Msa0677910:CDS | 35.0% |
| CTATCTGGTGAGATATGATT+AGG | + | chr4_4:32492363-32492382 | None:intergenic | 35.0% | |
| TCTGCTCAAAACAACAAAAG+TGG | - | chr4_4:32492432-32492451 | Msa0677910:intron | 35.0% | |
| CTGCTCAAAACAACAAAAGT+GGG | - | chr4_4:32492433-32492452 | Msa0677910:intron | 35.0% | |
| ! | AAGAGCGTACCTGTAATAAA+TGG | + | chr4_4:32492509-32492528 | None:intergenic | 35.0% |
| TTCTTCACCTTATAGCCTTT+CGG | + | chr4_4:32492766-32492785 | None:intergenic | 35.0% | |
| AAGAAACTAGAATACTTCCG+AGG | - | chr4_4:32492792-32492811 | Msa0677910:CDS | 35.0% | |
| ! | TTTCCCAATGCATTTTGTTC+AGG | + | chr4_4:32492882-32492901 | None:intergenic | 35.0% |
| ! | TTGGTATTGTTTCTTCTTGG+AGG | - | chr4_4:32492906-32492925 | Msa0677910:intron | 35.0% |
| !!! | TTCTTGGAGGTATTTTTGCA+GGG | - | chr4_4:32492919-32492938 | Msa0677910:intron | 35.0% |
| TATATCACCTCAATACGTGG+TGG | + | chr4_4:32489985-32490004 | None:intergenic | 40.0% | |
| ATACTGCAATAGTGGTCTGT+TGG | - | chr4_4:32490128-32490147 | Msa0677910:intron | 40.0% | |
| !! | TCTGTTGGCTTCTTGGAAAT+GGG | - | chr4_4:32490143-32490162 | Msa0677910:intron | 40.0% |
| ! | GAAATGGGTGTCTTTTCTCT+TGG | - | chr4_4:32490158-32490177 | Msa0677910:intron | 40.0% |
| ! | TGAAAGTACAAAGAGCTGAG+AGG | + | chr4_4:32490489-32490508 | None:intergenic | 40.0% |
| TGCAGAAATATCATCCCTCT+AGG | - | chr4_4:32490567-32490586 | Msa0677910:intron | 40.0% | |
| GCAGAAATATCATCCCTCTA+GGG | - | chr4_4:32490568-32490587 | Msa0677910:intron | 40.0% | |
| GTATATCAGCCATTTGCAGT+TGG | - | chr4_4:32490602-32490621 | Msa0677910:intron | 40.0% | |
| ACCTATTTACGTGTCGTAGT+TGG | - | chr4_4:32490806-32490825 | Msa0677910:intron | 40.0% | |
| TCCAACTACGACACGTAAAT+AGG | + | chr4_4:32490810-32490829 | None:intergenic | 40.0% | |
| TTAGCAACATCTGGTAAAGG+AGG | - | chr4_4:32490831-32490850 | Msa0677910:intron | 40.0% | |
| TAGCAACATCTGGTAAAGGA+GGG | - | chr4_4:32490832-32490851 | Msa0677910:intron | 40.0% | |
| TGCATAGTTAGTGGTGCATT+TGG | - | chr4_4:32490876-32490895 | Msa0677910:intron | 40.0% | |
| ATGCTGACCTGAACAAATTC+TGG | + | chr4_4:32490957-32490976 | None:intergenic | 40.0% | |
| ! | ACAATTTTATGCCTTTGCCG+AGG | - | chr4_4:32491068-32491087 | Msa0677910:CDS | 40.0% |
| TTGTTGTAGTCTTTCCTTGG+CGG | - | chr4_4:32491214-32491233 | Msa0677910:intron | 40.0% | |
| AAGAACTGCATGAATCAGAG+AGG | + | chr4_4:32491507-32491526 | None:intergenic | 40.0% | |
| GAACGGTAGTACTTCACAAT+TGG | + | chr4_4:32491599-32491618 | None:intergenic | 40.0% | |
| !!! | TGAAACAGTTTTGGACCCTT+CGG | + | chr4_4:32491633-32491652 | None:intergenic | 40.0% |
| ! | AAGGTCAGCTGAAACAGTTT+TGG | + | chr4_4:32491642-32491661 | None:intergenic | 40.0% |
| AGACCTCATTTCGAGAAGTA+CGG | - | chr4_4:32491678-32491697 | Msa0677910:CDS | 40.0% | |
| AAACCGTACTTCTCGAAATG+AGG | + | chr4_4:32491684-32491703 | None:intergenic | 40.0% | |
| CTGACATTGTCTATATTCCC+TGG | - | chr4_4:32491880-32491899 | Msa0677910:intron | 40.0% | |
| GATACCGGATTACACAGTTT+AGG | - | chr4_4:32491916-32491935 | Msa0677910:intron | 40.0% | |
| TGTGCCTAAACTGTGTAATC+CGG | + | chr4_4:32491923-32491942 | None:intergenic | 40.0% | |
| GATTACACAGTTTAGGCACA+TGG | - | chr4_4:32491923-32491942 | Msa0677910:intron | 40.0% | |
| CAATCCCTAAATGTATGTGG+TGG | - | chr4_4:32492022-32492041 | Msa0677910:CDS | 40.0% | |
| ACTGCAAAGTATGGTACTCA+AGG | - | chr4_4:32492667-32492686 | Msa0677910:intron | 40.0% | |
| CAAAGTATGGTACTCAAGGT+TGG | - | chr4_4:32492671-32492690 | Msa0677910:intron | 40.0% | |
| TCTTTCTTGGGGATATCCAA+TGG | - | chr4_4:32492709-32492728 | Msa0677910:intron | 40.0% | |
| TCTTCACCTTATAGCCTTTC+GGG | + | chr4_4:32492765-32492784 | None:intergenic | 40.0% | |
| GGACCTGAACAAAATGCATT+GGG | - | chr4_4:32492876-32492895 | Msa0677910:intron | 40.0% | |
| !!! | CTTCTTGGAGGTATTTTTGC+AGG | - | chr4_4:32492918-32492937 | Msa0677910:intron | 40.0% |
| !!! | TCTTGGAGGTATTTTTGCAG+GGG | - | chr4_4:32492920-32492939 | Msa0677910:intron | 40.0% |
| ! | GGGTAACACTTGATTGGTTA+TGG | - | chr4_4:32492940-32492959 | Msa0677910:intron | 40.0% |
| !! | ATAGTGGTCTGTTGGCTTCT+TGG | - | chr4_4:32490136-32490155 | Msa0677910:intron | 45.0% |
| !! | GTCTGTTGGCTTCTTGGAAA+TGG | - | chr4_4:32490142-32490161 | Msa0677910:intron | 45.0% |
| CTGGTTAGCGTTAATGTCTC+TGG | - | chr4_4:32490283-32490302 | Msa0677910:CDS | 45.0% | |
| CCAAATGCTCGGCTCAAAAA+GGG | + | chr4_4:32490446-32490465 | None:intergenic | 45.0% | |
| ACCAAATGCTCGGCTCAAAA+AGG | + | chr4_4:32490447-32490466 | None:intergenic | 45.0% | |
| ACAAGAGTAAGCACCCTAGA+GGG | + | chr4_4:32490584-32490603 | None:intergenic | 45.0% | |
| TACAAGAGTAAGCACCCTAG+AGG | + | chr4_4:32490585-32490604 | None:intergenic | 45.0% | |
| GCTAGTGTTCCAACTGCAAA+TGG | + | chr4_4:32490614-32490633 | None:intergenic | 45.0% | |
| ACATCTGGTAAAGGAGGGAT+TGG | - | chr4_4:32490837-32490856 | Msa0677910:intron | 45.0% | |
| GGAGGGATTGGAACATTCAT+TGG | - | chr4_4:32490849-32490868 | Msa0677910:intron | 45.0% | |
| TTAGCAGATGCTCATGCACA+AGG | - | chr4_4:32490900-32490919 | Msa0677910:intron | 45.0% | |
| CATGCACAAGGAGGAATGAT+TGG | - | chr4_4:32490912-32490931 | Msa0677910:intron | 45.0% | |
| GTTCAGGTCAGCATCATCAA+TGG | - | chr4_4:32490963-32490982 | Msa0677910:intron | 45.0% | |
| AGCATCAGGTGCTCTAACAT+CGG | - | chr4_4:32491243-32491262 | Msa0677910:intron | 45.0% | |
| !!! | CTTCGGATGCTGCTTTTGAA+CGG | + | chr4_4:32491616-32491635 | None:intergenic | 45.0% |
| GTTCAAAAGCAGCATCCGAA+GGG | - | chr4_4:32491615-32491634 | Msa0677910:intron | 45.0% | |
| GTACTTCTCGAAATGAGGTC+TGG | + | chr4_4:32491679-32491698 | None:intergenic | 45.0% | |
| CTTCACCTTATAGCCTTTCG+GGG | + | chr4_4:32492764-32492783 | None:intergenic | 45.0% | |
| GGGACCTGAACAAAATGCAT+TGG | - | chr4_4:32492875-32492894 | Msa0677910:intron | 45.0% | |
| TTGCAGGGGTAACACTTGAT+TGG | - | chr4_4:32492934-32492953 | Msa0677910:intron | 45.0% | |
| !!! | TTATTTAATATATTTTTCTT+TGG | - | chr4_4:32490511-32490530 | Msa0677910:intron | 5.0% |
| ATCACCTCAATACGTGGTGG+AGG | + | chr4_4:32489982-32490001 | None:intergenic | 50.0% | |
| ACATCAGACAACCTAACGCC+GGG | + | chr4_4:32490363-32490382 | None:intergenic | 50.0% | |
| CACATCAGACAACCTAACGC+CGG | + | chr4_4:32490364-32490383 | None:intergenic | 50.0% | |
| !! | CCCTTTTTGAGCCGAGCATT+TGG | - | chr4_4:32490443-32490462 | Msa0677910:intron | 50.0% |
| TGACCCAGCAACCAAATGCT+CGG | + | chr4_4:32490457-32490476 | None:intergenic | 50.0% | |
| !!! | AGTTTTAGACGCCTCGGCAA+AGG | + | chr4_4:32491082-32491101 | None:intergenic | 50.0% |
| !! | GTGCTCTAACATCGGCTTTG+AGG | - | chr4_4:32491251-32491270 | Msa0677910:intron | 50.0% |
| ! | TCTAAGGACGGACTTCGCAA+AGG | - | chr4_4:32491301-32491320 | Msa0677910:CDS | 50.0% |
| CAGCACTCTGATGCTTAGCA+TGG | - | chr4_4:32491336-32491355 | Msa0677910:CDS | 50.0% | |
| CGTTCAAAAGCAGCATCCGA+AGG | - | chr4_4:32491614-32491633 | Msa0677910:intron | 50.0% | |
| AAGTGAGAACACAGACAGCG+AGG | + | chr4_4:32492738-32492757 | None:intergenic | 50.0% | |
| TTCTGCCCCGAAAGGCTATA+AGG | - | chr4_4:32492756-32492775 | Msa0677910:CDS | 50.0% | |
| TGAGCCTCCACCACGTATTG+AGG | - | chr4_4:32489975-32489994 | Msa0677910:CDS | 55.0% | |
| !!! | CTGGTTTTATGCCCGGCGTT+AGG | - | chr4_4:32490349-32490368 | Msa0677910:CDS | 55.0% |
| TGAGCCGAGCATTTGGTTGC+TGG | - | chr4_4:32490450-32490469 | Msa0677910:intron | 55.0% | |
| GAGCCGAGCATTTGGTTGCT+GGG | - | chr4_4:32490451-32490470 | Msa0677910:intron | 55.0% | |
| GAGCATTTGGTTGCTGGGTC+AGG | - | chr4_4:32490456-32490475 | Msa0677910:intron | 55.0% | |
| GCAGATGCTCATGCACAAGG+AGG | - | chr4_4:32490903-32490922 | Msa0677910:intron | 55.0% | |
| TCTGGATTCCAGCTGCAGCA+AGG | + | chr4_4:32491661-32491680 | None:intergenic | 55.0% | |
| ACAGACAGCGAGGTAGCCAT+TGG | + | chr4_4:32492728-32492747 | None:intergenic | 55.0% | |
| GTTCTCACTTCTGCCCCGAA+AGG | - | chr4_4:32492748-32492767 | Msa0677910:CDS | 55.0% | |
| TCAGCTGACCTTGCTGCAGC+TGG | - | chr4_4:32491650-32491669 | Msa0677910:CDS | 60.0% | |
| CTGATGCTGCAGCACCGCCA+AGG | + | chr4_4:32491231-32491250 | None:intergenic | 65.0% | |
| !! | CTTGGCGGTGCTGCAGCATC+AGG | - | chr4_4:32491229-32491248 | Msa0677910:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 32489964 | 32492983 | 32489964 | ID=Msa0677910;Name=Msa0677910 |
| chr4_4 | mRNA | 32489964 | 32492983 | 32489964 | ID=Msa0677910-mRNA-1;Parent=Msa0677910;Name=Msa0677910-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0|0|1|1|1|9|0|414 |
| chr4_4 | exon | 32492951 | 32492983 | 32492951 | ID=Msa0677910-mRNA-1:exon:8028;Parent=Msa0677910-mRNA-1 |
| chr4_4 | exon | 32492722 | 32492826 | 32492722 | ID=Msa0677910-mRNA-1:exon:8027;Parent=Msa0677910-mRNA-1 |
| chr4_4 | exon | 32492220 | 32492375 | 32492220 | ID=Msa0677910-mRNA-1:exon:8026;Parent=Msa0677910-mRNA-1 |
| chr4_4 | exon | 32491979 | 32492122 | 32491979 | ID=Msa0677910-mRNA-1:exon:8025;Parent=Msa0677910-mRNA-1 |
| chr4_4 | exon | 32491619 | 32491724 | 32491619 | ID=Msa0677910-mRNA-1:exon:8024;Parent=Msa0677910-mRNA-1 |
| chr4_4 | exon | 32491253 | 32491425 | 32491253 | ID=Msa0677910-mRNA-1:exon:8023;Parent=Msa0677910-mRNA-1 |
| chr4_4 | exon | 32491003 | 32491163 | 32491003 | ID=Msa0677910-mRNA-1:exon:8022;Parent=Msa0677910-mRNA-1 |
| chr4_4 | exon | 32490170 | 32490428 | 32490170 | ID=Msa0677910-mRNA-1:exon:8021;Parent=Msa0677910-mRNA-1 |
| chr4_4 | exon | 32489964 | 32490071 | 32489964 | ID=Msa0677910-mRNA-1:exon:8020;Parent=Msa0677910-mRNA-1 |
| chr4_4 | CDS | 32492951 | 32492983 | 32492951 | ID=Msa0677910-mRNA-1:cds;Parent=Msa0677910-mRNA-1 |
| chr4_4 | CDS | 32492722 | 32492826 | 32492722 | ID=Msa0677910-mRNA-1:cds;Parent=Msa0677910-mRNA-1 |
| chr4_4 | CDS | 32492220 | 32492375 | 32492220 | ID=Msa0677910-mRNA-1:cds;Parent=Msa0677910-mRNA-1 |
| chr4_4 | CDS | 32491979 | 32492122 | 32491979 | ID=Msa0677910-mRNA-1:cds;Parent=Msa0677910-mRNA-1 |
| chr4_4 | CDS | 32491619 | 32491724 | 32491619 | ID=Msa0677910-mRNA-1:cds;Parent=Msa0677910-mRNA-1 |
| chr4_4 | CDS | 32491253 | 32491425 | 32491253 | ID=Msa0677910-mRNA-1:cds;Parent=Msa0677910-mRNA-1 |
| chr4_4 | CDS | 32491003 | 32491163 | 32491003 | ID=Msa0677910-mRNA-1:cds;Parent=Msa0677910-mRNA-1 |
| chr4_4 | CDS | 32490170 | 32490428 | 32490170 | ID=Msa0677910-mRNA-1:cds;Parent=Msa0677910-mRNA-1 |
| chr4_4 | CDS | 32489964 | 32490071 | 32489964 | ID=Msa0677910-mRNA-1:cds;Parent=Msa0677910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
