Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544000 | XP_003605947.1 | 96.097 | 538 | 21 | 0 | 1 | 538 | 1 | 538 | 0.0 | 1056 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544000 | sp|P29162|ASOL_TOBAC | 53.480 | 546 | 242 | 5 | 1 | 535 | 1 | 545 | 0.0 | 579 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544000 | G7JDL2 | 96.097 | 538 | 21 | 0 | 1 | 538 | 1 | 538 | 0.0 | 1056 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0468700 | Msa0544000 | 0.801433 | 9.026337e-49 | -8.615850e-47 |
| Msa0514580 | Msa0544000 | 0.800227 | 1.590898e-48 | -8.615850e-47 |
| Msa0544000 | Msa1008260 | 0.817354 | 3.444805e-52 | -8.615850e-47 |
| Msa0544000 | Msa1154260 | 0.800656 | 1.301227e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544000 | MtrunA17_Chr4g0024861 | 96.097 | 538 | 21 | 0 | 1 | 538 | 1 | 538 | 0.0 | 1056 |
| Msa0544000 | MtrunA17_Chr2g0322441 | 87.476 | 519 | 65 | 0 | 18 | 536 | 21 | 539 | 0.0 | 940 |
| Msa0544000 | MtrunA17_Chr4g0024641 | 93.973 | 448 | 26 | 1 | 87 | 534 | 11 | 457 | 0.0 | 867 |
| Msa0544000 | MtrunA17_Chr4g0024641 | 79.518 | 83 | 17 | 0 | 456 | 538 | 875 | 957 | 5.60e-36 | 143 |
| Msa0544000 | MtrunA17_Chr4g0024641 | 68.687 | 99 | 24 | 2 | 438 | 534 | 798 | 891 | 2.18e-33 | 135 |
| Msa0544000 | MtrunA17_Chr4g0024641 | 79.747 | 79 | 16 | 0 | 456 | 534 | 503 | 581 | 4.81e-33 | 134 |
| Msa0544000 | MtrunA17_Chr4g0024641 | 79.747 | 79 | 16 | 0 | 456 | 534 | 565 | 643 | 4.81e-33 | 134 |
| Msa0544000 | MtrunA17_Chr4g0024641 | 79.747 | 79 | 16 | 0 | 456 | 534 | 627 | 705 | 4.81e-33 | 134 |
| Msa0544000 | MtrunA17_Chr4g0024641 | 79.747 | 79 | 16 | 0 | 456 | 534 | 689 | 767 | 4.81e-33 | 134 |
| Msa0544000 | MtrunA17_Chr4g0024641 | 95.238 | 63 | 3 | 0 | 472 | 534 | 457 | 519 | 1.46e-32 | 133 |
| Msa0544000 | MtrunA17_Chr4g0024641 | 78.481 | 79 | 17 | 0 | 456 | 534 | 751 | 829 | 5.93e-32 | 131 |
| Msa0544000 | MtrunA17_Chr4g0038671 | 71.563 | 531 | 145 | 2 | 12 | 537 | 10 | 539 | 0.0 | 804 |
| Msa0544000 | MtrunA17_Chr1g0157341 | 72.316 | 531 | 147 | 0 | 7 | 537 | 9 | 539 | 0.0 | 802 |
| Msa0544000 | MtrunA17_Chr3g0143671 | 69.303 | 531 | 163 | 0 | 7 | 537 | 10 | 540 | 0.0 | 795 |
| Msa0544000 | MtrunA17_Chr4g0075071 | 71.887 | 530 | 147 | 1 | 9 | 536 | 11 | 540 | 0.0 | 776 |
| Msa0544000 | MtrunA17_Chr8g0374271 | 60.348 | 517 | 202 | 2 | 22 | 537 | 26 | 540 | 0.0 | 659 |
| Msa0544000 | MtrunA17_Chr5g0402831 | 61.731 | 520 | 195 | 2 | 18 | 537 | 22 | 537 | 0.0 | 654 |
| Msa0544000 | MtrunA17_Chr8g0374261 | 54.682 | 534 | 234 | 4 | 6 | 533 | 3 | 534 | 0.0 | 617 |
| Msa0544000 | MtrunA17_Chr4g0043251 | 52.134 | 539 | 246 | 5 | 4 | 531 | 1 | 538 | 0.0 | 561 |
| Msa0544000 | MtrunA17_Chr4g0043261 | 51.036 | 531 | 255 | 4 | 5 | 531 | 3 | 532 | 0.0 | 548 |
| Msa0544000 | MtrunA17_Chr3g0121151 | 51.215 | 535 | 252 | 4 | 5 | 531 | 44 | 577 | 0.0 | 546 |
| Msa0544000 | MtrunA17_Chr3g0121161 | 51.796 | 529 | 246 | 4 | 11 | 531 | 50 | 577 | 0.0 | 545 |
| Msa0544000 | MtrunA17_Chr4g0056511 | 51.554 | 547 | 241 | 7 | 9 | 532 | 6 | 551 | 0.0 | 531 |
| Msa0544000 | MtrunA17_Chr3g0079321 | 48.736 | 554 | 259 | 9 | 1 | 531 | 1 | 552 | 1.07e-178 | 516 |
| Msa0544000 | MtrunA17_Chr3g0121171 | 51.402 | 535 | 251 | 4 | 5 | 531 | 579 | 1112 | 4.58e-176 | 548 |
| Msa0544000 | MtrunA17_Chr3g0121171 | 51.215 | 535 | 252 | 4 | 5 | 531 | 1154 | 1687 | 4.78e-175 | 545 |
| Msa0544000 | MtrunA17_Chr3g0121171 | 52.703 | 518 | 236 | 4 | 22 | 531 | 21 | 537 | 4.32e-174 | 542 |
| Msa0544000 | MtrunA17_Chr3g0121171 | 49.533 | 535 | 252 | 5 | 5 | 531 | 1729 | 2253 | 2.15e-164 | 515 |
| Msa0544000 | MtrunA17_Chr7g0234061 | 49.240 | 526 | 247 | 7 | 24 | 531 | 26 | 549 | 9.32e-168 | 488 |
| Msa0544000 | MtrunA17_Chr1g0197301 | 45.455 | 330 | 177 | 3 | 205 | 531 | 1 | 330 | 2.62e-92 | 285 |
| Msa0544000 | MtrunA17_Chr4g0075781 | 56.250 | 208 | 48 | 2 | 131 | 336 | 1 | 167 | 9.63e-67 | 213 |
| Msa0544000 | MtrunA17_Chr5g0404361 | 29.982 | 567 | 351 | 19 | 1 | 530 | 54 | 611 | 5.40e-56 | 198 |
| Msa0544000 | MtrunA17_Chr3g0118321 | 27.797 | 572 | 346 | 17 | 8 | 531 | 11 | 563 | 6.80e-53 | 188 |
| Msa0544000 | MtrunA17_Chr5g0404341 | 30.059 | 509 | 303 | 18 | 23 | 490 | 30 | 526 | 7.76e-53 | 188 |
| Msa0544000 | MtrunA17_Chr8g0382691 | 28.272 | 573 | 323 | 16 | 22 | 535 | 29 | 572 | 1.65e-50 | 182 |
| Msa0544000 | MtrunA17_Chr5g0436461 | 28.429 | 503 | 309 | 13 | 27 | 490 | 24 | 514 | 5.17e-50 | 180 |
| Msa0544000 | MtrunA17_Chr4g0005921 | 27.831 | 521 | 324 | 15 | 7 | 490 | 12 | 517 | 5.64e-49 | 177 |
| Msa0544000 | MtrunA17_Chr3g0104061 | 26.816 | 537 | 354 | 13 | 27 | 530 | 26 | 556 | 1.02e-47 | 174 |
| Msa0544000 | MtrunA17_Chr5g0429511 | 26.157 | 562 | 368 | 16 | 8 | 530 | 5 | 558 | 6.29e-47 | 172 |
| Msa0544000 | MtrunA17_Chr1g0197311 | 39.496 | 238 | 102 | 6 | 11 | 209 | 9 | 243 | 1.32e-46 | 163 |
| Msa0544000 | MtrunA17_Chr3g0118331 | 28.174 | 575 | 339 | 19 | 8 | 531 | 11 | 562 | 4.48e-46 | 170 |
| Msa0544000 | MtrunA17_Chr5g0431581 | 27.241 | 569 | 355 | 18 | 7 | 530 | 6 | 560 | 9.42e-44 | 163 |
| Msa0544000 | MtrunA17_Chr4g0024651 | 91.566 | 83 | 7 | 0 | 1 | 83 | 1 | 83 | 3.80e-43 | 149 |
| Msa0544000 | MtrunA17_Chr3g0114211 | 27.639 | 521 | 333 | 15 | 8 | 490 | 16 | 530 | 1.17e-42 | 160 |
| Msa0544000 | MtrunA17_Chr8g0346581 | 26.154 | 520 | 343 | 13 | 8 | 490 | 16 | 531 | 4.64e-42 | 159 |
| Msa0544000 | MtrunA17_Chr5g0437681 | 26.565 | 527 | 336 | 16 | 9 | 490 | 7 | 527 | 1.46e-38 | 149 |
| Msa0544000 | MtrunA17_Chr7g0238941 | 24.472 | 568 | 375 | 15 | 8 | 530 | 20 | 578 | 5.24e-38 | 147 |
| Msa0544000 | MtrunA17_Chr7g0237441 | 26.511 | 513 | 323 | 18 | 27 | 490 | 33 | 540 | 1.58e-37 | 145 |
| Msa0544000 | MtrunA17_Chr7g0238351 | 26.265 | 514 | 324 | 17 | 27 | 490 | 33 | 541 | 1.43e-36 | 143 |
| Msa0544000 | MtrunA17_Chr7g0237491 | 25.977 | 512 | 327 | 17 | 27 | 490 | 33 | 540 | 4.34e-36 | 142 |
| Msa0544000 | MtrunA17_Chr7g0240991 | 25.904 | 498 | 310 | 18 | 44 | 490 | 42 | 531 | 4.34e-36 | 141 |
| Msa0544000 | MtrunA17_Chr7g0240971 | 26.163 | 516 | 325 | 15 | 29 | 495 | 27 | 535 | 9.36e-35 | 137 |
| Msa0544000 | MtrunA17_Chr2g0278811 | 24.278 | 589 | 372 | 16 | 11 | 530 | 24 | 607 | 2.13e-34 | 137 |
| Msa0544000 | MtrunA17_Chr4g0031901 | 24.506 | 506 | 336 | 13 | 27 | 490 | 44 | 545 | 1.50e-32 | 131 |
| Msa0544000 | MtrunA17_Chr7g0238981 | 24.219 | 512 | 335 | 14 | 27 | 490 | 47 | 553 | 1.38e-31 | 129 |
| Msa0544000 | MtrunA17_Chr4g0008521 | 24.819 | 552 | 358 | 17 | 29 | 530 | 28 | 572 | 5.11e-30 | 124 |
| Msa0544000 | MtrunA17_Chr3g0118351 | 24.927 | 341 | 204 | 8 | 231 | 531 | 6 | 334 | 1.49e-21 | 96.3 |
| Msa0544000 | MtrunA17_Chr3g0133871 | 28.155 | 206 | 142 | 4 | 1 | 201 | 3 | 207 | 9.82e-19 | 85.5 |
| Msa0544000 | MtrunA17_Chr3g0118341 | 33.721 | 172 | 104 | 6 | 4 | 172 | 8 | 172 | 2.67e-18 | 84.0 |
| Msa0544000 | MtrunA17_Chr3g0133861 | 29.568 | 301 | 169 | 14 | 226 | 490 | 7 | 300 | 4.72e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544000 | AT1G76160.1 | 71.509 | 530 | 149 | 2 | 7 | 536 | 9 | 536 | 0.0 | 801 |
| Msa0544000 | AT4G22010.1 | 70.544 | 533 | 155 | 2 | 7 | 537 | 5 | 537 | 0.0 | 796 |
| Msa0544000 | AT1G41830.1 | 67.736 | 530 | 170 | 1 | 8 | 537 | 10 | 538 | 0.0 | 769 |
| Msa0544000 | AT1G21850.1 | 67.232 | 531 | 172 | 2 | 7 | 537 | 9 | 537 | 0.0 | 763 |
| Msa0544000 | AT1G21860.1 | 66.226 | 530 | 177 | 2 | 8 | 537 | 10 | 537 | 0.0 | 751 |
| Msa0544000 | AT4G38420.1 | 63.246 | 536 | 191 | 3 | 8 | 537 | 11 | 546 | 0.0 | 709 |
| Msa0544000 | AT4G28090.1 | 59.280 | 528 | 211 | 4 | 9 | 533 | 11 | 537 | 0.0 | 661 |
| Msa0544000 | AT5G66920.1 | 57.115 | 520 | 221 | 1 | 18 | 537 | 28 | 545 | 0.0 | 633 |
| Msa0544000 | AT4G38420.3 | 61.996 | 471 | 173 | 3 | 8 | 472 | 11 | 481 | 0.0 | 607 |
| Msa0544000 | AT4G37160.1 | 54.340 | 530 | 238 | 3 | 7 | 533 | 9 | 537 | 0.0 | 583 |
| Msa0544000 | AT1G55570.1 | 54.749 | 537 | 230 | 5 | 8 | 535 | 13 | 545 | 0.0 | 581 |
| Msa0544000 | AT3G13400.2 | 54.174 | 539 | 238 | 4 | 5 | 535 | 5 | 542 | 0.0 | 580 |
| Msa0544000 | AT3G13400.1 | 54.174 | 539 | 238 | 4 | 5 | 535 | 5 | 542 | 0.0 | 580 |
| Msa0544000 | AT1G55560.1 | 53.645 | 535 | 239 | 4 | 9 | 535 | 8 | 541 | 0.0 | 577 |
| Msa0544000 | AT2G23630.2 | 56.286 | 517 | 225 | 1 | 17 | 533 | 25 | 540 | 0.0 | 576 |
| Msa0544000 | AT2G23630.1 | 56.286 | 517 | 225 | 1 | 17 | 533 | 20 | 535 | 0.0 | 576 |
| Msa0544000 | AT3G13390.1 | 55.939 | 522 | 220 | 4 | 23 | 535 | 24 | 544 | 0.0 | 572 |
| Msa0544000 | AT4G38420.2 | 61.712 | 444 | 164 | 3 | 8 | 445 | 11 | 454 | 0.0 | 568 |
| Msa0544000 | AT4G12420.1 | 50.635 | 551 | 249 | 7 | 1 | 531 | 1 | 548 | 0.0 | 544 |
| Msa0544000 | AT4G12420.2 | 50.635 | 551 | 249 | 7 | 1 | 531 | 1 | 548 | 0.0 | 544 |
| Msa0544000 | AT5G48450.1 | 49.348 | 537 | 258 | 8 | 8 | 532 | 10 | 544 | 0.0 | 525 |
| Msa0544000 | AT5G48450.2 | 49.348 | 537 | 258 | 8 | 8 | 532 | 10 | 544 | 0.0 | 523 |
| Msa0544000 | AT1G75790.1 | 48.059 | 541 | 269 | 4 | 4 | 533 | 5 | 544 | 6.15e-178 | 513 |
| Msa0544000 | AT5G51480.1 | 48.790 | 537 | 254 | 8 | 15 | 531 | 16 | 551 | 3.86e-177 | 512 |
| Msa0544000 | AT4G25240.2 | 49.446 | 542 | 252 | 8 | 10 | 531 | 12 | 551 | 7.20e-175 | 506 |
| Msa0544000 | AT4G25240.1 | 49.446 | 542 | 252 | 8 | 10 | 531 | 12 | 551 | 7.20e-175 | 506 |
| Msa0544000 | AT4G37160.2 | 55.656 | 442 | 192 | 3 | 7 | 445 | 9 | 449 | 4.72e-172 | 494 |
| Msa0544000 | AT5G21105.1 | 28.014 | 589 | 339 | 20 | 3 | 531 | 13 | 576 | 2.32e-54 | 193 |
| Msa0544000 | AT4G39830.1 | 26.817 | 578 | 355 | 15 | 9 | 533 | 18 | 580 | 1.58e-52 | 188 |
| Msa0544000 | AT5G21105.3 | 28.755 | 546 | 309 | 19 | 3 | 488 | 13 | 538 | 1.60e-52 | 187 |
| Msa0544000 | AT5G21100.1 | 27.469 | 557 | 325 | 18 | 31 | 531 | 28 | 561 | 3.89e-51 | 184 |
| Msa0544000 | AT2G38080.1 | 27.257 | 565 | 369 | 14 | 1 | 530 | 1 | 558 | 1.00e-50 | 183 |
| Msa0544000 | AT5G58910.2 | 28.273 | 527 | 332 | 14 | 4 | 490 | 7 | 527 | 1.92e-50 | 182 |
| Msa0544000 | AT5G58910.3 | 28.273 | 527 | 331 | 15 | 4 | 490 | 7 | 526 | 1.00e-48 | 177 |
| Msa0544000 | AT5G01190.1 | 26.667 | 570 | 366 | 17 | 1 | 530 | 1 | 558 | 2.73e-45 | 168 |
| Msa0544000 | AT2G46570.1 | 26.036 | 507 | 323 | 13 | 27 | 490 | 32 | 529 | 7.14e-45 | 167 |
| Msa0544000 | AT5G58910.1 | 28.778 | 483 | 291 | 15 | 48 | 490 | 14 | 483 | 2.65e-43 | 162 |
| Msa0544000 | AT5G03260.1 | 27.885 | 520 | 327 | 16 | 9 | 490 | 8 | 517 | 1.06e-42 | 160 |
| Msa0544000 | AT2G30210.1 | 27.664 | 535 | 337 | 17 | 1 | 490 | 1 | 530 | 2.88e-42 | 159 |
| Msa0544000 | AT5G01190.2 | 26.316 | 570 | 354 | 18 | 1 | 530 | 1 | 544 | 5.85e-42 | 158 |
| Msa0544000 | AT4G39830.3 | 26.978 | 493 | 293 | 14 | 93 | 533 | 6 | 483 | 3.87e-40 | 152 |
| Msa0544000 | AT4G39830.2 | 26.978 | 493 | 293 | 14 | 93 | 533 | 8 | 485 | 4.54e-40 | 152 |
| Msa0544000 | AT5G01050.1 | 27.130 | 575 | 350 | 20 | 10 | 532 | 13 | 570 | 4.75e-39 | 150 |
| Msa0544000 | AT1G18140.1 | 25.641 | 546 | 331 | 20 | 10 | 490 | 6 | 541 | 8.96e-38 | 147 |
| Msa0544000 | AT5G09360.1 | 25.287 | 522 | 345 | 14 | 6 | 490 | 16 | 529 | 4.86e-37 | 145 |
| Msa0544000 | AT5G07130.1 | 27.119 | 531 | 328 | 20 | 10 | 490 | 8 | 529 | 3.50e-36 | 142 |
| Msa0544000 | AT5G01040.1 | 27.170 | 530 | 321 | 18 | 10 | 490 | 13 | 526 | 3.74e-36 | 142 |
| Msa0544000 | AT2G40370.1 | 24.254 | 536 | 350 | 13 | 7 | 490 | 9 | 540 | 5.08e-36 | 142 |
| Msa0544000 | AT5G05390.1 | 25.462 | 487 | 324 | 11 | 41 | 490 | 41 | 525 | 7.25e-36 | 141 |
| Msa0544000 | AT4G39830.4 | 26.166 | 493 | 284 | 14 | 93 | 533 | 8 | 472 | 1.28e-35 | 139 |
| Msa0544000 | AT2G46570.2 | 26.503 | 449 | 280 | 14 | 84 | 490 | 4 | 444 | 1.32e-35 | 139 |
| Msa0544000 | AT5G48100.1 | 27.198 | 489 | 302 | 15 | 48 | 490 | 43 | 523 | 3.24e-35 | 139 |
| Msa0544000 | AT2G29130.1 | 25.197 | 508 | 332 | 15 | 27 | 490 | 30 | 533 | 4.78e-35 | 139 |
| Msa0544000 | AT3G09220.1 | 24.952 | 521 | 343 | 13 | 13 | 490 | 12 | 527 | 1.50e-32 | 132 |
| Msa0544000 | AT5G21105.2 | 28.531 | 354 | 205 | 11 | 205 | 531 | 53 | 385 | 1.60e-31 | 126 |
| Msa0544000 | AT5G60020.1 | 23.050 | 577 | 383 | 17 | 8 | 530 | 8 | 577 | 1.89e-29 | 122 |
| Msa0544000 | AT5G60020.2 | 23.670 | 545 | 355 | 17 | 8 | 498 | 8 | 545 | 2.06e-28 | 119 |
| Msa0544000 | AT5G60020.3 | 23.091 | 537 | 354 | 16 | 48 | 530 | 14 | 545 | 3.48e-28 | 119 |
| Msa0544000 | AT5G07130.2 | 26.667 | 450 | 274 | 18 | 90 | 490 | 2 | 444 | 2.77e-24 | 106 |
| Msa0544000 | AT5G07130.3 | 26.667 | 450 | 274 | 18 | 90 | 490 | 2 | 444 | 2.77e-24 | 106 |
| Msa0544000 | AT3G09220.2 | 24.651 | 430 | 283 | 11 | 100 | 490 | 3 | 430 | 6.58e-22 | 99.4 |
Find 149 sgRNAs with CRISPR-Local
Find 306 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAACAATGTTGTGTCTTCT+TGG | 0.193584 | 4_1:-31729307 | Msa0544000:CDS |
| AACTCAGCAGCAAGTGTTTC+TGG | 0.200322 | 4_1:-31727061 | Msa0544000:CDS |
| CAAGCTTATTTATATGTCTA+AGG | 0.265165 | 4_1:-31724937 | Msa0544000:three_prime_UTR |
| ATGAACCTTTCCTCATTTCT+TGG | 0.290193 | 4_1:-31728916 | Msa0544000:intron |
| TGGTAGGTTCCTTGTGGATT+TGG | 0.297781 | 4_1:+31726233 | None:intergenic |
| AGTGTTTCTGGTCCTCTTCC+TGG | 0.307053 | 4_1:-31727049 | Msa0544000:CDS |
| CCGCCACCGGTGGGGTTGTC+CGG | 0.309224 | 4_1:+31726041 | None:intergenic |
| CGACTCACTTGACATTCATT+TGG | 0.309674 | 4_1:-31727200 | Msa0544000:CDS |
| CCACAAGGAACCTACCATTA+TGG | 0.317959 | 4_1:-31726227 | Msa0544000:CDS |
| GTACCAATCTCCTGCCAATA+TGG | 0.320758 | 4_1:+31727927 | None:intergenic |
| GACTCACTTGACATTCATTT+GGG | 0.323880 | 4_1:-31727199 | Msa0544000:CDS |
| CAGGGAAGACTTACAGATTC+CGG | 0.326068 | 4_1:-31727324 | Msa0544000:CDS |
| CCCTTGGATTCTAAAATTGA+TGG | 0.329802 | 4_1:+31727276 | None:intergenic |
| CACAAGGCAGCAGGAGGTTA+TGG | 0.332098 | 4_1:-31728015 | Msa0544000:CDS |
| ATGGTAAATTTGTTTGGTTT+TGG | 0.332967 | 4_1:-31729384 | Msa0544000:five_prime_UTR |
| AATACACTCTAAGATAAAAT+TGG | 0.334224 | 4_1:+31725234 | None:intergenic |
| TTGATAAATGGACAATTTCC+AGG | 0.349584 | 4_1:-31728998 | Msa0544000:CDS |
| GTTCCTTGTGGATTTGGTCT+TGG | 0.355975 | 4_1:+31726239 | None:intergenic |
| TGAATAGACTCTATTCATCT+TGG | 0.356080 | 4_1:+31725083 | None:intergenic |
| CAAATGGAGAAGATCCTTAC+AGG | 0.364480 | 4_1:-31729260 | Msa0544000:CDS |
| CTCCACAAAACCTCGAAAAT+CGG | 0.365811 | 4_1:+31725989 | None:intergenic |
| TTGCAATCATGGCACATTGA+TGG | 0.376663 | 4_1:-31725939 | Msa0544000:CDS |
| TATAATTGGAATGTTACATA+TGG | 0.378868 | 4_1:-31729234 | Msa0544000:CDS |
| AAACACTTTATTAAAAGAAT+AGG | 0.384825 | 4_1:-31725011 | Msa0544000:three_prime_UTR |
| TTGAACAAGCTCGGTCTCTA+AGG | 0.387217 | 4_1:-31726997 | Msa0544000:intron |
| TGAAGTGCATTGCTTGGAAT+AGG | 0.394371 | 4_1:+31725182 | None:intergenic |
| CTGAAGATACTTTGCAATCA+TGG | 0.396158 | 4_1:-31725950 | Msa0544000:CDS |
| CAAGCTTCATCTTATGCCCT+TGG | 0.398188 | 4_1:+31727260 | None:intergenic |
| TCATCTCTCACTGAATTTGC+AGG | 0.400229 | 4_1:+31725209 | None:intergenic |
| GAATAGACTCTATTCATCTT+GGG | 0.406100 | 4_1:+31725084 | None:intergenic |
| GGACATAGCTTCTTTGTAGT+AGG | 0.408807 | 4_1:-31725918 | Msa0544000:CDS |
| GAATTGGGCAAGACAGTACT+TGG | 0.414940 | 4_1:-31725261 | Msa0544000:CDS |
| CATGATTGCAAAGTATCTTC+AGG | 0.417916 | 4_1:+31725951 | None:intergenic |
| CTTGCATTTCACAAGGCAGC+AGG | 0.433357 | 4_1:-31728024 | Msa0544000:CDS |
| CGCCACCGGTGGGGTTGTCC+GGG | 0.436488 | 4_1:+31726042 | None:intergenic |
| ATCCGGAGATTACACCATAT+TGG | 0.446297 | 4_1:-31727941 | Msa0544000:CDS |
| GGGGCAGACGTATTCTGTAT+TGG | 0.447694 | 4_1:-31727179 | Msa0544000:CDS |
| GGAATGTGAGGTCTGAGAAT+TGG | 0.449805 | 4_1:-31725277 | Msa0544000:CDS |
| GAAGTGCATTGCTTGGAATA+GGG | 0.450911 | 4_1:+31725183 | None:intergenic |
| TTGTGTTTATCATTCCATAA+TGG | 0.454708 | 4_1:+31726213 | None:intergenic |
| GAATGTGAGGTCTGAGAATT+GGG | 0.454791 | 4_1:-31725276 | Msa0544000:CDS |
| ACACCATATTGGCAGGAGAT+TGG | 0.455774 | 4_1:-31727930 | Msa0544000:CDS |
| CCATTGATGACAAGTCCATC+AGG | 0.456809 | 4_1:+31727766 | None:intergenic |
| AGTGATCTTCCTTTCCCTGA+TGG | 0.460805 | 4_1:-31727781 | Msa0544000:CDS |
| AAGTGCATGGTAAATTTGTT+TGG | 0.467441 | 4_1:-31729390 | Msa0544000:five_prime_UTR |
| ACTGACTCAATCTGTGGCCC+TGG | 0.467858 | 4_1:+31728980 | None:intergenic |
| CCTGATGGACTTGTCATCAA+TGG | 0.468702 | 4_1:-31727766 | Msa0544000:CDS |
| CCACACTGAAGTGCATTGCT+TGG | 0.471125 | 4_1:+31725176 | None:intergenic |
| TCCACTTGGAGTTAAACAAC+AGG | 0.471870 | 4_1:-31729202 | Msa0544000:intron |
| TACAGTGCAGTCCATGACTT+TGG | 0.473369 | 4_1:+31725326 | None:intergenic |
| TACACATTCACTGTTGATCA+AGG | 0.474298 | 4_1:-31727727 | Msa0544000:intron |
| AATTCTGCTCCAATTATCAA+TGG | 0.480816 | 4_1:-31726170 | Msa0544000:CDS |
| CCGGACAACCCCACCGGTGG+CGG | 0.481645 | 4_1:-31726041 | Msa0544000:CDS |
| GACAACCCCACCGGTGGCGG+TGG | 0.486775 | 4_1:-31726038 | Msa0544000:CDS |
| TAATCCCCACATTTGATATC+CGG | 0.487792 | 4_1:+31727305 | None:intergenic |
| TTACTTGTTGCATGTGCAAA+TGG | 0.488058 | 4_1:-31729276 | Msa0544000:CDS |
| TCTCCGGATGGAGGATCAAA+AGG | 0.489579 | 4_1:+31727955 | None:intergenic |
| TCATGGCAGGATGGAATGTA+TGG | 0.493019 | 4_1:-31728135 | Msa0544000:CDS |
| ATCACTTCCGCTATCTAAAA+CGG | 0.493695 | 4_1:+31727798 | None:intergenic |
| ATTTCAGTGGTTGGTCCACC+AGG | 0.494287 | 4_1:+31727031 | None:intergenic |
| ATGAAGCTTGTTGAGGTGGA+AGG | 0.497246 | 4_1:-31727247 | Msa0544000:CDS |
| AGTTTGAGTGGTGTATCAGC+AGG | 0.498988 | 4_1:+31726110 | None:intergenic |
| TGTTCAAATTCTAAAGCAAA+AGG | 0.499877 | 4_1:-31729482 | Msa0544000:five_prime_UTR |
| CACAACAAGGTTCACCTCAC+AGG | 0.502544 | 4_1:-31727116 | Msa0544000:CDS |
| TTCCAATTATAAAACCTGTA+AGG | 0.505183 | 4_1:+31729246 | None:intergenic |
| AATTGCTCGTAGTACAGTTC+AGG | 0.508901 | 4_1:-31725629 | Msa0544000:intron |
| AACAGTGAATGTGTAAGCAT+TGG | 0.510570 | 4_1:+31727735 | None:intergenic |
| GACATAGCTTCTTTGTAGTA+GGG | 0.514001 | 4_1:-31725917 | Msa0544000:intron |
| ATTGGAATTTGCAGGATGGA+TGG | 0.516169 | 4_1:-31725700 | Msa0544000:intron |
| AGAAGTCAAAATGAATATCC+TGG | 0.517094 | 4_1:+31725115 | None:intergenic |
| ACCTGTTGTTTAACTCCAAG+TGG | 0.517766 | 4_1:+31729201 | None:intergenic |
| CTTCAAGTAAAAGATCAGAT+TGG | 0.518189 | 4_1:-31728069 | Msa0544000:CDS |
| ACGAATTGTCCAATCTCTCC+AGG | 0.520893 | 4_1:-31728111 | Msa0544000:CDS |
| ACTTCAGTGTGGCAAGGCAG+TGG | 0.529238 | 4_1:-31725165 | Msa0544000:CDS |
| TGCCAATATGGTGTAATCTC+CGG | 0.534303 | 4_1:+31727939 | None:intergenic |
| GACTGCACTGTACATGCCAT+TGG | 0.535391 | 4_1:-31725315 | Msa0544000:CDS |
| ACGACAATGTAGTAGTCATT+TGG | 0.536487 | 4_1:+31727139 | None:intergenic |
| TGAGTTACTGTAATGAAGAA+TGG | 0.539308 | 4_1:+31727078 | None:intergenic |
| GTTTATCATTCCATAATGGT+AGG | 0.542317 | 4_1:+31726217 | None:intergenic |
| AAAAGGTAAAAGAAAAGTGT+AGG | 0.542903 | 4_1:-31729465 | Msa0544000:five_prime_UTR |
| CTGATTACTTCAAGATCGAA+GGG | 0.547045 | 4_1:-31726085 | Msa0544000:CDS |
| TATGGAGATATTTATCCACT+TGG | 0.549980 | 4_1:-31729216 | Msa0544000:CDS |
| AATATTGAATTGAAAGTGCA+TGG | 0.550776 | 4_1:-31729403 | Msa0544000:five_prime_UTR |
| GGAGATTACACCATATTGGC+AGG | 0.551378 | 4_1:-31727937 | Msa0544000:CDS |
| CAGATTCCGGATATCAAATG+TGG | 0.551399 | 4_1:-31727311 | Msa0544000:CDS |
| CTTCAGTGTGGCAAGGCAGT+GGG | 0.552136 | 4_1:-31725164 | Msa0544000:CDS |
| CCATAATGGTAGGTTCCTTG+TGG | 0.554362 | 4_1:+31726227 | None:intergenic |
| GTGGTTGGTCCACCAGGAAG+AGG | 0.554841 | 4_1:+31727037 | None:intergenic |
| AAGATAACCACCGCCACCGG+TGG | 0.558909 | 4_1:+31726031 | None:intergenic |
| GACCAACCACTGAAATCGAT+TGG | 0.560334 | 4_1:-31727024 | Msa0544000:CDS |
| AGGAGGAATCTTACAGCAAG+TGG | 0.561277 | 4_1:-31726263 | Msa0544000:CDS |
| ACACTCTAAGATAAAATTGG+TGG | 0.562579 | 4_1:+31725237 | None:intergenic |
| CTGAAGATAACCACCGCCAC+CGG | 0.563841 | 4_1:+31726028 | None:intergenic |
| ATCAAAAGGTACGGGAATCA+CGG | 0.567091 | 4_1:+31727969 | None:intergenic |
| CACATTCCCACATTATCCAA+TGG | 0.568508 | 4_1:+31725299 | None:intergenic |
| AGTATCCCGGACAACCCCAC+CGG | 0.569660 | 4_1:-31726047 | Msa0544000:CDS |
| TGATAAATGGACAATTTCCA+GGG | 0.570857 | 4_1:-31728997 | Msa0544000:CDS |
| GATGGAGGATCAAAAGGTAC+GGG | 0.571707 | 4_1:+31727961 | None:intergenic |
| TAAGATGAAGCTTGTTGAGG+TGG | 0.574215 | 4_1:-31727251 | Msa0544000:CDS |
| CACAGGTGTATCCAAAGTCA+TGG | 0.575020 | 4_1:-31725337 | Msa0544000:intron |
| GGATGGAGGATCAAAAGGTA+CGG | 0.575105 | 4_1:+31727960 | None:intergenic |
| TTATCTTCAGACTTCTGTCA+TGG | 0.575658 | 4_1:-31726015 | Msa0544000:CDS |
| ACAATGTAGTAGTCATTTGG+TGG | 0.577035 | 4_1:+31727142 | None:intergenic |
| GCTGATTACTTCAAGATCGA+AGG | 0.577722 | 4_1:-31726086 | Msa0544000:CDS |
| GCAGAGGAGAAACTCATGGC+AGG | 0.580251 | 4_1:-31728148 | Msa0544000:CDS |
| GTTTCTGGTCCTCTTCCTGG+TGG | 0.590601 | 4_1:-31727046 | Msa0544000:CDS |
| AAGTAATCAGCTAGTTTGAG+TGG | 0.592921 | 4_1:+31726098 | None:intergenic |
| GACCAATCGATTTCAGTGGT+TGG | 0.598810 | 4_1:+31727022 | None:intergenic |
| AGATAACCACCGCCACCGGT+GGG | 0.599729 | 4_1:+31726032 | None:intergenic |
| ATGTGGGAATGTGGAATGTG+AGG | 0.600216 | 4_1:-31725289 | Msa0544000:CDS |
| ATAGGAATGGAGTGCTGCAG+AGG | 0.601936 | 4_1:-31728164 | Msa0544000:intron |
| AGGAGAAACTCATGGCAGGA+TGG | 0.603275 | 4_1:-31728144 | Msa0544000:CDS |
| ACAAGACTAACCAAGAAATG+AGG | 0.605612 | 4_1:+31728906 | None:intergenic |
| AGATTCCGGATATCAAATGT+GGG | 0.607158 | 4_1:-31727310 | Msa0544000:CDS |
| ATGACAAGTCCATCAGGGAA+AGG | 0.607922 | 4_1:+31727772 | None:intergenic |
| GGAATTTGCAGGATGGATGG+AGG | 0.610007 | 4_1:-31725697 | Msa0544000:intron |
| ATTGGTCCGTTGAACAAGCT+CGG | 0.612260 | 4_1:-31727006 | Msa0544000:CDS |
| ATCCCGGACAACCCCACCGG+TGG | 0.615788 | 4_1:-31726044 | Msa0544000:CDS |
| AACGGACCAATCGATTTCAG+TGG | 0.617391 | 4_1:+31727018 | None:intergenic |
| CAATGCACTTCAGTGTGGCA+AGG | 0.617833 | 4_1:-31725171 | Msa0544000:CDS |
| TGCTGCAGAGGAGAAACTCA+TGG | 0.618620 | 4_1:-31728152 | Msa0544000:CDS |
| GCATTTCACAAGGCAGCAGG+AGG | 0.618965 | 4_1:-31728021 | Msa0544000:CDS |
| GTACATGCCATTGGATAATG+TGG | 0.618969 | 4_1:-31725306 | Msa0544000:CDS |
| GGACTTGTCATCAATGGCCG+CGG | 0.620003 | 4_1:-31727760 | Msa0544000:CDS |
| GATAACCACCGCCACCGGTG+GGG | 0.622912 | 4_1:+31726033 | None:intergenic |
| TCCTTCGCTTGCATTTCACA+AGG | 0.628311 | 4_1:-31728031 | Msa0544000:CDS |
| CATTGATGACAAGTCCATCA+GGG | 0.632768 | 4_1:+31727767 | None:intergenic |
| TAGAGACCGAGCTTGTTCAA+CGG | 0.637365 | 4_1:+31727000 | None:intergenic |
| TTAGTCACTGACTCAATCTG+TGG | 0.642277 | 4_1:+31728974 | None:intergenic |
| ACTAACCAAGAAATGAGGAA+AGG | 0.643027 | 4_1:+31728911 | None:intergenic |
| GCCTTGTGAAATGCAAGCGA+AGG | 0.646133 | 4_1:+31728030 | None:intergenic |
| GCATAAGATGAAGCTTGTTG+AGG | 0.650000 | 4_1:-31727254 | Msa0544000:CDS |
| ATGGTGTAATCTCCGGATGG+AGG | 0.654029 | 4_1:+31727946 | None:intergenic |
| GCAGGATGGATGGAGGACAA+TGG | 0.655581 | 4_1:-31725690 | Msa0544000:intron |
| ATGTGTAAGCATTGGAACCG+CGG | 0.655680 | 4_1:+31727743 | None:intergenic |
| AAGGCAGCAGGAGGTTATGG+CGG | 0.659210 | 4_1:-31728012 | Msa0544000:CDS |
| ACTACATTGTCGTCACAACA+AGG | 0.664796 | 4_1:-31727129 | Msa0544000:CDS |
| GTTTGAGTGGTGTATCAGCA+GGG | 0.670319 | 4_1:+31726111 | None:intergenic |
| AATATGGTGTAATCTCCGGA+TGG | 0.671667 | 4_1:+31727943 | None:intergenic |
| CATTGGATAATGTGGGAATG+TGG | 0.674160 | 4_1:-31725298 | Msa0544000:CDS |
| AATTGGGCAAGACAGTACTT+GGG | 0.674927 | 4_1:-31725260 | Msa0544000:CDS |
| TCTTCAGACTTCTGTCATGG+CGG | 0.691399 | 4_1:-31726012 | Msa0544000:CDS |
| CCAAGCAATGCACTTCAGTG+TGG | 0.697000 | 4_1:-31725176 | Msa0544000:CDS |
| GATTCCGGATATCAAATGTG+GGG | 0.700602 | 4_1:-31727309 | Msa0544000:CDS |
| ACTCACTTGACATTCATTTG+GGG | 0.706031 | 4_1:-31727198 | Msa0544000:CDS |
| GGACCAAGACCAAATCCACA+AGG | 0.716812 | 4_1:-31726242 | Msa0544000:CDS |
| TACATGCCATTGGATAATGT+GGG | 0.717897 | 4_1:-31725305 | Msa0544000:CDS |
| TGATTACTTCAAGATCGAAG+GGG | 0.721706 | 4_1:-31726084 | Msa0544000:CDS |
| TGAAGCATTCAGCACCTGTG+AGG | 0.765250 | 4_1:+31727102 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACAAAAAAAAAAAAAGTT+TGG | + | chr4_1:31728027-31728046 | None:intergenic | 10.0% |
| !! | TTAAATAAAAATACTAATTG+TGG | + | chr4_1:31729239-31729258 | None:intergenic | 10.0% |
| !!! | TTGTTATTTACTTATTTGTT+TGG | + | chr4_1:31726109-31726128 | None:intergenic | 15.0% |
| !! | AATAAGTAAATAACAATATC+AGG | - | chr4_1:31726113-31726132 | Msa0544000:CDS | 15.0% |
| !! | TTTAGATTATGTAATTCTAT+AGG | - | chr4_1:31726192-31726211 | Msa0544000:CDS | 15.0% |
| !! | AAAATAAATCTATTAGAATG+AGG | - | chr4_1:31726970-31726989 | Msa0544000:intron | 15.0% |
| !! | AAATAAATCTATTAGAATGA+GGG | - | chr4_1:31726971-31726990 | Msa0544000:intron | 15.0% |
| !!! | ATTAGTATTTTTATTTAACC+AGG | - | chr4_1:31729241-31729260 | Msa0544000:CDS | 15.0% |
| !! | AAACACTTTATTAAAAGAAT+AGG | - | chr4_1:31729363-31729382 | Msa0544000:five_prime_UTR | 15.0% |
| !! | TATAATTGGAATGTTACATA+TGG | - | chr4_1:31725140-31725159 | Msa0544000:exon | 20.0% |
| !!! | ATGTTTTCTCAAATTTTTAG+CGG | - | chr4_1:31725298-31725317 | Msa0544000:CDS | 20.0% |
| !! | TCCATATATTCATTTCTATA+TGG | - | chr4_1:31725331-31725350 | Msa0544000:CDS | 20.0% |
| !! | ACCATATAGAAATGAATATA+TGG | + | chr4_1:31725335-31725354 | None:intergenic | 20.0% |
| !!! | TATCAATGTTTTTAATAGCT+TGG | - | chr4_1:31725435-31725454 | Msa0544000:intron | 20.0% |
| !! | CAATAAATTGTGCTAAAAAA+AGG | + | chr4_1:31725564-31725583 | None:intergenic | 20.0% |
| !!! | CTTTTTTTAGCACAATTTAT+TGG | - | chr4_1:31725562-31725581 | Msa0544000:intron | 20.0% |
| !! | TCGAAATTCAAAGATTAAAT+TGG | + | chr4_1:31725665-31725684 | None:intergenic | 20.0% |
| !!! | TATTAGTGTTGTTAGTATTT+TGG | + | chr4_1:31725776-31725795 | None:intergenic | 20.0% |
| !! | ACAACACTAATATTTATTTC+TGG | - | chr4_1:31725784-31725803 | Msa0544000:intron | 20.0% |
| !!! | AGACCAAATTAATTTGTTTA+TGG | + | chr4_1:31725844-31725863 | None:intergenic | 20.0% |
| !!! | AATTTAGTCTTTAAAATCAG+AGG | + | chr4_1:31726037-31726056 | None:intergenic | 20.0% |
| !!! | TCTGATTTTAAAGACTAAAT+TGG | - | chr4_1:31726036-31726055 | Msa0544000:CDS | 20.0% |
| !! | ATTATGTAATTCTATAGGAA+TGG | - | chr4_1:31726197-31726216 | Msa0544000:CDS | 20.0% |
| !!! | TTAATTTGTGTTTATTTTGC+AGG | - | chr4_1:31726544-31726563 | Msa0544000:intron | 20.0% |
| !! | ATATAAATTACTGCACATAT+CGG | - | chr4_1:31727924-31727943 | Msa0544000:CDS | 20.0% |
| !! | CAAAAAAAAAAAAAGTTTGG+CGG | + | chr4_1:31728024-31728043 | None:intergenic | 20.0% |
| !! | AACAAATGATTAATTGAATC+AGG | - | chr4_1:31728091-31728110 | Msa0544000:CDS | 20.0% |
| !!! | TCTAAAGTAACAAATAGTTT+GGG | + | chr4_1:31728606-31728625 | None:intergenic | 20.0% |
| !!! | TTCTAAAGTAACAAATAGTT+TGG | + | chr4_1:31728607-31728626 | None:intergenic | 20.0% |
| !!! | TATTTTCCATTCTGATAATA+TGG | - | chr4_1:31728645-31728664 | Msa0544000:intron | 20.0% |
| !! | AAATATCCATATTATCAGAA+TGG | + | chr4_1:31728654-31728673 | None:intergenic | 20.0% |
| !! | CTGATAATATGGATATTTAT+TGG | - | chr4_1:31728656-31728675 | Msa0544000:intron | 20.0% |
| !! | AAAATATGAATGAGTATTAG+AGG | + | chr4_1:31728901-31728920 | None:intergenic | 20.0% |
| !!! | CATATTACTGATAATCATTT+TGG | - | chr4_1:31728974-31728993 | Msa0544000:CDS | 20.0% |
| !!! | AATACACTCTAAGATAAAAT+TGG | + | chr4_1:31729143-31729162 | None:intergenic | 20.0% |
| !!! | GAGTTTTCTAATATATAATG+TGG | - | chr4_1:31729396-31729415 | Msa0544000:five_prime_UTR | 20.0% |
| !!! | TGTTCAAATTCTAAAGCAAA+AGG | - | chr4_1:31724892-31724911 | Msa0544000:three_prime_UTR | 25.0% |
| !! | AAAAGGTAAAAGAAAAGTGT+AGG | - | chr4_1:31724909-31724928 | Msa0544000:three_prime_UTR | 25.0% |
| !! | AATATTGAATTGAAAGTGCA+TGG | - | chr4_1:31724971-31724990 | Msa0544000:three_prime_UTR | 25.0% |
| !!! | ATGGTAAATTTGTTTGGTTT+TGG | - | chr4_1:31724990-31725009 | Msa0544000:three_prime_UTR | 25.0% |
| !!! | AATTTGTTTGGTTTTGGTTT+TGG | - | chr4_1:31724996-31725015 | Msa0544000:three_prime_UTR | 25.0% |
| !!! | ATCCTTACAGGTTTTATAAT+TGG | - | chr4_1:31725126-31725145 | Msa0544000:three_prime_UTR | 25.0% |
| ! | TTCCAATTATAAAACCTGTA+AGG | + | chr4_1:31725131-31725150 | None:intergenic | 25.0% |
| ! | ATTTATTGGAGTGAATTGTA+TGG | - | chr4_1:31725576-31725595 | Msa0544000:intron | 25.0% |
| !!! | TAGATAATTTTGAAAACAGC+TGG | - | chr4_1:31725614-31725633 | Msa0544000:intron | 25.0% |
| ! | TTTGAATTTCGACTTAATCT+CGG | - | chr4_1:31725673-31725692 | Msa0544000:CDS | 25.0% |
| !!! | GTTGTTAGTATTTTGGTTTA+AGG | + | chr4_1:31725769-31725788 | None:intergenic | 25.0% |
| ! | GGTCCATAAACAAATTAATT+TGG | - | chr4_1:31725838-31725857 | Msa0544000:intron | 25.0% |
| !!! | GATTTTAAAGACTAAATTGG+TGG | - | chr4_1:31726039-31726058 | Msa0544000:CDS | 25.0% |
| !! | AAAACACTGAATTTTCAACA+TGG | + | chr4_1:31726174-31726193 | None:intergenic | 25.0% |
| ! | CAAGATTTCTTAAACATTGA+AGG | + | chr4_1:31726511-31726530 | None:intergenic | 25.0% |
| !! | CAAATTTCAGGTAAACAAAT+TGG | + | chr4_1:31726689-31726708 | None:intergenic | 25.0% |
| ! | GTAGTCATACAAAACAAAAT+CGG | + | chr4_1:31726730-31726749 | None:intergenic | 25.0% |
| !! | TGTTTTGTATGACTACTAAT+CGG | - | chr4_1:31726734-31726753 | Msa0544000:intron | 25.0% |
| !!! | TTGTTAGATATGTTTTTCGA+GGG | - | chr4_1:31726757-31726776 | Msa0544000:intron | 25.0% |
| !!! | AGTTTGCTTATAATTCGTTT+TGG | + | chr4_1:31727810-31727829 | None:intergenic | 25.0% |
| ! | GTATAAATTCCTATGAAACA+CGG | + | chr4_1:31728002-31728021 | None:intergenic | 25.0% |
| ! | AAATGATTAATTGAATCAGG+AGG | - | chr4_1:31728094-31728113 | Msa0544000:CDS | 25.0% |
| ! | TTGTGTTTATCATTCCATAA+TGG | + | chr4_1:31728164-31728183 | None:intergenic | 25.0% |
| !!! | CTTTGTTTTCCATTGATAAT+TGG | + | chr4_1:31728216-31728235 | None:intergenic | 25.0% |
| ! | AATATTTATAAGGGAACCTT+TGG | - | chr4_1:31728831-31728850 | Msa0544000:intron | 25.0% |
| ! | CATCATAAATCATATGTCAA+TGG | + | chr4_1:31728876-31728895 | None:intergenic | 25.0% |
| !! | TTTGGTCTTTAACATGATTA+AGG | - | chr4_1:31728992-31729011 | Msa0544000:CDS | 25.0% |
| !! | TTGGTCTTTAACATGATTAA+GGG | - | chr4_1:31728993-31729012 | Msa0544000:CDS | 25.0% |
| ! | CAAGCTTATTTATATGTCTA+AGG | - | chr4_1:31729437-31729456 | Msa0544000:five_prime_UTR | 25.0% |
| ! | AAGTGCATGGTAAATTTGTT+TGG | - | chr4_1:31724984-31725003 | Msa0544000:three_prime_UTR | 30.0% |
| AGTGAGAAAAAACTGAGAAA+TGG | - | chr4_1:31725037-31725056 | Msa0544000:three_prime_UTR | 30.0% | |
| GTGAGAAAAAACTGAGAAAT+GGG | - | chr4_1:31725038-31725057 | Msa0544000:three_prime_UTR | 30.0% | |
| TATGGAGATATTTATCCACT+TGG | - | chr4_1:31725158-31725177 | Msa0544000:CDS | 30.0% | |
| TTGATAAATGGACAATTTCC+AGG | - | chr4_1:31725376-31725395 | Msa0544000:intron | 30.0% | |
| TGATAAATGGACAATTTCCA+GGG | - | chr4_1:31725377-31725396 | Msa0544000:intron | 30.0% | |
| ! | TTGTTTCTTGTTTAATCCAC+TGG | - | chr4_1:31725487-31725506 | Msa0544000:intron | 30.0% |
| !! | TATTTATTTCTGGAGAGCAT+TGG | - | chr4_1:31725794-31725813 | Msa0544000:intron | 30.0% |
| TGCCCTTAAGAATATATTGA+CGG | - | chr4_1:31725817-31725836 | Msa0544000:intron | 30.0% | |
| GACCGTCAATATATTCTTAA+GGG | + | chr4_1:31725822-31725841 | None:intergenic | 30.0% | |
| TTCGTCGAAATTATTTGAGA+GGG | + | chr4_1:31725917-31725936 | None:intergenic | 30.0% | |
| ATTCGTCGAAATTATTTGAG+AGG | + | chr4_1:31725918-31725937 | None:intergenic | 30.0% | |
| !! | TCTTTAAAATCAGAGGTGTT+AGG | + | chr4_1:31726030-31726049 | None:intergenic | 30.0% |
| ! | CTGAATTTTCAACATGGATA+TGG | + | chr4_1:31726168-31726187 | None:intergenic | 30.0% |
| !! | ATATAAGTGAAGTTTTGTCC+TGG | + | chr4_1:31726284-31726303 | None:intergenic | 30.0% |
| CTTCAAGTAAAAGATCAGAT+TGG | - | chr4_1:31726305-31726324 | Msa0544000:intron | 30.0% | |
| !!! | TGTTTATTTTGCAGGATTTG+AGG | - | chr4_1:31726552-31726571 | Msa0544000:intron | 30.0% |
| !!! | GTTTATTTTGCAGGATTTGA+GGG | - | chr4_1:31726553-31726572 | Msa0544000:intron | 30.0% |
| ! | GTTGTTAGATATGTTTTTCG+AGG | - | chr4_1:31726756-31726775 | Msa0544000:intron | 30.0% |
| TTGTTTGTAACGAGAAAAGA+GGG | + | chr4_1:31726885-31726904 | None:intergenic | 30.0% | |
| ATTGTTTGTAACGAGAAAAG+AGG | + | chr4_1:31726886-31726905 | None:intergenic | 30.0% | |
| TAAATCTATTAGAATGAGGG+CGG | - | chr4_1:31726974-31726993 | Msa0544000:intron | 30.0% | |
| !!! | TCCATCAATTTTAGAATCCA+AGG | - | chr4_1:31727097-31727116 | Msa0544000:CDS | 30.0% |
| !!! | CCATCAATTTTAGAATCCAA+GGG | - | chr4_1:31727098-31727117 | Msa0544000:CDS | 30.0% |
| TGAGTTACTGTAATGAAGAA+TGG | + | chr4_1:31727299-31727318 | None:intergenic | 30.0% | |
| ! | AGCATGTTTTCCATTATTTC+CGG | - | chr4_1:31727669-31727688 | Msa0544000:intron | 30.0% |
| ! | TCATTTGTTAAAGTCAGCAT+CGG | + | chr4_1:31728080-31728099 | None:intergenic | 30.0% |
| GTTTATCATTCCATAATGGT+AGG | + | chr4_1:31728160-31728179 | None:intergenic | 30.0% | |
| AATTCTGCTCCAATTATCAA+TGG | - | chr4_1:31728204-31728223 | Msa0544000:intron | 30.0% | |
| GGATATTTATTGGAATTTGC+AGG | - | chr4_1:31728666-31728685 | Msa0544000:intron | 30.0% | |
| ATTTATTGGAATTTGCAGGA+TGG | - | chr4_1:31728670-31728689 | Msa0544000:intron | 30.0% | |
| TCTTTCTATGTTTCTTACAC+AGG | - | chr4_1:31729020-31729039 | Msa0544000:intron | 30.0% | |
| !! | ACACTCTAAGATAAAATTGG+TGG | + | chr4_1:31729140-31729159 | None:intergenic | 30.0% |
| AGAAGTCAAAATGAATATCC+TGG | + | chr4_1:31729262-31729281 | None:intergenic | 30.0% | |
| GAATAGACTCTATTCATCTT+GGG | + | chr4_1:31729293-31729312 | None:intergenic | 30.0% | |
| TGAATAGACTCTATTCATCT+TGG | + | chr4_1:31729294-31729313 | None:intergenic | 30.0% | |
| CAAACAATGTTGTGTCTTCT+TGG | - | chr4_1:31725067-31725086 | Msa0544000:three_prime_UTR | 35.0% | |
| ! | TTACTTGTTGCATGTGCAAA+TGG | - | chr4_1:31725098-31725117 | Msa0544000:three_prime_UTR | 35.0% |
| !!! | TCTCAAATTTTTAGCGGTGT+CGG | - | chr4_1:31725304-31725323 | Msa0544000:CDS | 35.0% |
| ! | ATATGGTTTGTGAAATGTGC+AGG | - | chr4_1:31725348-31725367 | Msa0544000:intron | 35.0% |
| ! | TATGGTTTGTGAAATGTGCA+GGG | - | chr4_1:31725349-31725368 | Msa0544000:intron | 35.0% |
| ATGAACCTTTCCTCATTTCT+TGG | - | chr4_1:31725458-31725477 | Msa0544000:intron | 35.0% | |
| ACTAACCAAGAAATGAGGAA+AGG | + | chr4_1:31725466-31725485 | None:intergenic | 35.0% | |
| ACAAGACTAACCAAGAAATG+AGG | + | chr4_1:31725471-31725490 | None:intergenic | 35.0% | |
| TAATCTCGGACATGGATATA+AGG | - | chr4_1:31725687-31725706 | Msa0544000:CDS | 35.0% | |
| !!! | TAGTATTTTGGTTTAAGGCG+AGG | + | chr4_1:31725764-31725783 | None:intergenic | 35.0% |
| GGACCGTCAATATATTCTTA+AGG | + | chr4_1:31725823-31725842 | None:intergenic | 35.0% | |
| ATAAATCGAACCATCCTCAA+AGG | - | chr4_1:31725936-31725955 | Msa0544000:CDS | 35.0% | |
| ! | TTGTATTGTTCCTTTGAGGA+TGG | + | chr4_1:31725949-31725968 | None:intergenic | 35.0% |
| TCGATTGTATTGTTCCTTTG+AGG | + | chr4_1:31725953-31725972 | None:intergenic | 35.0% | |
| TCAAAGGAACAATACAATCG+AGG | - | chr4_1:31725952-31725971 | Msa0544000:CDS | 35.0% | |
| ATCACTTCCGCTATCTAAAA+CGG | + | chr4_1:31726579-31726598 | None:intergenic | 35.0% | |
| AACAGTGAATGTGTAAGCAT+TGG | + | chr4_1:31726642-31726661 | None:intergenic | 35.0% | |
| TACACATTCACTGTTGATCA+AGG | - | chr4_1:31726647-31726666 | Msa0544000:intron | 35.0% | |
| CTGCTATGGTATCAAATTTC+AGG | + | chr4_1:31726701-31726720 | None:intergenic | 35.0% | |
| ACAATCCCTTATCTCTTCAA+CGG | - | chr4_1:31726790-31726809 | Msa0544000:intron | 35.0% | |
| CATAACCGTTGAAGAGATAA+GGG | + | chr4_1:31726798-31726817 | None:intergenic | 35.0% | |
| ACATAACCGTTGAAGAGATA+AGG | + | chr4_1:31726799-31726818 | None:intergenic | 35.0% | |
| AACTAATATCAGCTGGATCT+AGG | + | chr4_1:31726823-31726842 | None:intergenic | 35.0% | |
| AGTGGTTAACTAATATCAGC+TGG | + | chr4_1:31726830-31726849 | None:intergenic | 35.0% | |
| ! | TAAAGTGCTTGATTGTTTGC+AGG | - | chr4_1:31727031-31727050 | Msa0544000:CDS | 35.0% |
| ! | AAAGTGCTTGATTGTTTGCA+GGG | - | chr4_1:31727032-31727051 | Msa0544000:CDS | 35.0% |
| AGATTCCGGATATCAAATGT+GGG | - | chr4_1:31727064-31727083 | Msa0544000:CDS | 35.0% | |
| TAATCCCCACATTTGATATC+CGG | + | chr4_1:31727072-31727091 | None:intergenic | 35.0% | |
| !! | CCCTTGGATTCTAAAATTGA+TGG | + | chr4_1:31727101-31727120 | None:intergenic | 35.0% |
| GACTCACTTGACATTCATTT+GGG | - | chr4_1:31727175-31727194 | Msa0544000:CDS | 35.0% | |
| ACTCACTTGACATTCATTTG+GGG | - | chr4_1:31727176-31727195 | Msa0544000:CDS | 35.0% | |
| ACAATGTAGTAGTCATTTGG+TGG | + | chr4_1:31727235-31727254 | None:intergenic | 35.0% | |
| ACGACAATGTAGTAGTCATT+TGG | + | chr4_1:31727238-31727257 | None:intergenic | 35.0% | |
| CGATCGATAAGAATTGAACT+CGG | - | chr4_1:31727487-31727506 | Msa0544000:intron | 35.0% | |
| AATTGAACTCGGTAGTACTT+AGG | - | chr4_1:31727498-31727517 | Msa0544000:intron | 35.0% | |
| ATTGAACTCGGTAGTACTTA+GGG | - | chr4_1:31727499-31727518 | Msa0544000:intron | 35.0% | |
| AATTTACTTAACTACCACCG+AGG | + | chr4_1:31727570-31727589 | None:intergenic | 35.0% | |
| ATAATATCCTTCGCAATTCG+CGG | - | chr4_1:31727716-31727735 | Msa0544000:intron | 35.0% | |
| AAACTAATTCGCAGCAGTTA+CGG | - | chr4_1:31727825-31727844 | Msa0544000:intron | 35.0% | |
| ! | AAGTAATCAGCTAGTTTGAG+TGG | + | chr4_1:31728279-31728298 | None:intergenic | 35.0% |
| CTGATTACTTCAAGATCGAA+GGG | - | chr4_1:31728289-31728308 | Msa0544000:intron | 35.0% | |
| TGATTACTTCAAGATCGAAG+GGG | - | chr4_1:31728290-31728309 | Msa0544000:intron | 35.0% | |
| TTATCTTCAGACTTCTGTCA+TGG | - | chr4_1:31728359-31728378 | Msa0544000:intron | 35.0% | |
| ! | CATGATTGCAAAGTATCTTC+AGG | + | chr4_1:31728426-31728445 | None:intergenic | 35.0% |
| CTGAAGATACTTTGCAATCA+TGG | - | chr4_1:31728424-31728443 | Msa0544000:intron | 35.0% | |
| GACATAGCTTCTTTGTAGTA+GGG | - | chr4_1:31728457-31728476 | Msa0544000:intron | 35.0% | |
| ! | AGCATTAAGCCTTATCACAA+TGG | + | chr4_1:31728788-31728807 | None:intergenic | 35.0% |
| TAGCATCATCTACAAACCAA+AGG | + | chr4_1:31728850-31728869 | None:intergenic | 35.0% | |
| TACATGCCATTGGATAATGT+GGG | - | chr4_1:31729069-31729088 | Msa0544000:intron | 35.0% | |
| !! | GACTGCTTTTCTTTGCACAA+AGG | - | chr4_1:31724936-31724955 | Msa0544000:three_prime_UTR | 40.0% |
| CAAATGGAGAAGATCCTTAC+AGG | - | chr4_1:31725114-31725133 | Msa0544000:three_prime_UTR | 40.0% | |
| TCCACTTGGAGTTAAACAAC+AGG | - | chr4_1:31725172-31725191 | Msa0544000:CDS | 40.0% | |
| ! | ACCTGTTGTTTAACTCCAAG+TGG | + | chr4_1:31725176-31725195 | None:intergenic | 40.0% |
| ! | ATGGTTTGTGAAATGTGCAG+GGG | - | chr4_1:31725350-31725369 | Msa0544000:intron | 40.0% |
| !! | GTGCAGGGGATTTTGATAAA+TGG | - | chr4_1:31725364-31725383 | Msa0544000:intron | 40.0% |
| !! | TTAGTCACTGACTCAATCTG+TGG | + | chr4_1:31725403-31725422 | None:intergenic | 40.0% |
| TGCAACTAATGCTTTACCAG+TGG | + | chr4_1:31725506-31725525 | None:intergenic | 40.0% | |
| TTTCGACTTAATCTCGGACA+TGG | - | chr4_1:31725679-31725698 | Msa0544000:CDS | 40.0% | |
| ATGGATATAAGGTTGGAGTG+AGG | - | chr4_1:31725698-31725717 | Msa0544000:intron | 40.0% | |
| TGGATATAAGGTTGGAGTGA+GGG | - | chr4_1:31725699-31725718 | Msa0544000:intron | 40.0% | |
| ATTATTTGAGAGGGACTCGA+GGG | + | chr4_1:31725908-31725927 | None:intergenic | 40.0% | |
| AATTATTTGAGAGGGACTCG+AGG | + | chr4_1:31725909-31725928 | None:intergenic | 40.0% | |
| !! | TAAAATCAGAGGTGTTAGGC+AGG | + | chr4_1:31726026-31726045 | None:intergenic | 40.0% |
| ! | CACGTCAGTTTTTATACTCG+CGG | + | chr4_1:31726066-31726085 | None:intergenic | 40.0% |
| !! | AAGTTTTGTCCTGGAGAGAT+TGG | + | chr4_1:31726275-31726294 | None:intergenic | 40.0% |
| ! | ATCAAAAGGTACGGGAATCA+CGG | + | chr4_1:31726408-31726427 | None:intergenic | 40.0% |
| AATATGGTGTAATCTCCGGA+TGG | + | chr4_1:31726434-31726453 | None:intergenic | 40.0% | |
| ATCCGGAGATTACACCATAT+TGG | - | chr4_1:31726433-31726452 | Msa0544000:intron | 40.0% | |
| TGCCAATATGGTGTAATCTC+CGG | + | chr4_1:31726438-31726457 | None:intergenic | 40.0% | |
| ! | CATTGATGACAAGTCCATCA+GGG | + | chr4_1:31726610-31726629 | None:intergenic | 40.0% |
| ! | AAAATCGGCTTCATCTGCTA+TGG | + | chr4_1:31726715-31726734 | None:intergenic | 40.0% |
| GTTGAAGAGATAAGGGATTG+TGG | + | chr4_1:31726791-31726810 | None:intergenic | 40.0% | |
| TAACGAGAAAAGAGGGTAGA+CGG | + | chr4_1:31726878-31726897 | None:intergenic | 40.0% | |
| CAGATTCCGGATATCAAATG+TGG | - | chr4_1:31727063-31727082 | Msa0544000:CDS | 40.0% | |
| GATTCCGGATATCAAATGTG+GGG | - | chr4_1:31727065-31727084 | Msa0544000:CDS | 40.0% | |
| !! | GCATAAGATGAAGCTTGTTG+AGG | - | chr4_1:31727120-31727139 | Msa0544000:CDS | 40.0% |
| !! | TAAGATGAAGCTTGTTGAGG+TGG | - | chr4_1:31727123-31727142 | Msa0544000:CDS | 40.0% |
| CGACTCACTTGACATTCATT+TGG | - | chr4_1:31727174-31727193 | Msa0544000:CDS | 40.0% | |
| ACTACATTGTCGTCACAACA+AGG | - | chr4_1:31727245-31727264 | Msa0544000:CDS | 40.0% | |
| TTGAACTCGGTAGTACTTAG+GGG | - | chr4_1:31727500-31727519 | Msa0544000:intron | 40.0% | |
| CCTATCACATTATGTCGCAA+TGG | + | chr4_1:31727630-31727649 | None:intergenic | 40.0% | |
| CCATTGCGACATAATGTGAT+AGG | - | chr4_1:31727627-31727646 | Msa0544000:intron | 40.0% | |
| GCACAATGTTCCGGAAATAA+TGG | + | chr4_1:31727682-31727701 | None:intergenic | 40.0% | |
| GTTAAGTGTGCACAATGTTC+CGG | + | chr4_1:31727691-31727710 | None:intergenic | 40.0% | |
| TGTCCAATACTGACAATCGT+TGG | - | chr4_1:31727947-31727966 | Msa0544000:CDS | 40.0% | |
| TGTCCAACGATTGTCAGTAT+TGG | + | chr4_1:31727953-31727972 | None:intergenic | 40.0% | |
| GCTGATTACTTCAAGATCGA+AGG | - | chr4_1:31728288-31728307 | Msa0544000:intron | 40.0% | |
| !!! | GTTTTCACTTGGAAGTATCC+CGG | - | chr4_1:31728314-31728333 | Msa0544000:intron | 40.0% |
| CTCCACAAAACCTCGAAAAT+CGG | + | chr4_1:31728388-31728407 | None:intergenic | 40.0% | |
| TTGCAATCATGGCACATTGA+TGG | - | chr4_1:31728435-31728454 | Msa0544000:intron | 40.0% | |
| GGACATAGCTTCTTTGTAGT+AGG | - | chr4_1:31728456-31728475 | Msa0544000:intron | 40.0% | |
| ATGGAGGATACATGGTTTAC+GGG | + | chr4_1:31728555-31728574 | None:intergenic | 40.0% | |
| CATGGAGGATACATGGTTTA+CGG | + | chr4_1:31728556-31728575 | None:intergenic | 40.0% | |
| TATTTCGATCATGTTGCGCA+TGG | + | chr4_1:31728574-31728593 | None:intergenic | 40.0% | |
| ATTGGAATTTGCAGGATGGA+TGG | - | chr4_1:31728674-31728693 | Msa0544000:intron | 40.0% | |
| AATTGCTCGTAGTACAGTTC+AGG | - | chr4_1:31728745-31728764 | Msa0544000:intron | 40.0% | |
| GTTCGCTATCCATTGTGATA+AGG | - | chr4_1:31728776-31728795 | Msa0544000:intron | 40.0% | |
| GTACATGCCATTGGATAATG+TGG | - | chr4_1:31729068-31729087 | Msa0544000:intron | 40.0% | |
| CACATTCCCACATTATCCAA+TGG | + | chr4_1:31729078-31729097 | None:intergenic | 40.0% | |
| CATTGGATAATGTGGGAATG+TGG | - | chr4_1:31729076-31729095 | Msa0544000:intron | 40.0% | |
| GAATGTGAGGTCTGAGAATT+GGG | - | chr4_1:31729098-31729117 | Msa0544000:intron | 40.0% | |
| AATTGGGCAAGACAGTACTT+GGG | - | chr4_1:31729114-31729133 | Msa0544000:intron | 40.0% | |
| TCATCTCTCACTGAATTTGC+AGG | + | chr4_1:31729168-31729187 | None:intergenic | 40.0% | |
| GAAGTGCATTGCTTGGAATA+GGG | + | chr4_1:31729194-31729213 | None:intergenic | 40.0% | |
| TGAAGTGCATTGCTTGGAAT+AGG | + | chr4_1:31729195-31729214 | None:intergenic | 40.0% | |
| GAAAACAGCTGGACAATGCA+TGG | - | chr4_1:31725625-31725644 | Msa0544000:intron | 45.0% | |
| CTCGGACATGGATATAAGGT+TGG | - | chr4_1:31725691-31725710 | Msa0544000:intron | 45.0% | |
| TCATGGCAGGATGGAATGTA+TGG | - | chr4_1:31726239-31726258 | Msa0544000:CDS | 45.0% | |
| ACGAATTGTCCAATCTCTCC+AGG | - | chr4_1:31726263-31726282 | Msa0544000:CDS | 45.0% | |
| TCCTTCGCTTGCATTTCACA+AGG | - | chr4_1:31726343-31726362 | Msa0544000:intron | 45.0% | |
| ! | GATGGAGGATCAAAAGGTAC+GGG | + | chr4_1:31726416-31726435 | None:intergenic | 45.0% |
| GGATGGAGGATCAAAAGGTA+CGG | + | chr4_1:31726417-31726436 | None:intergenic | 45.0% | |
| ! | GTACCTTTTGATCCTCCATC+CGG | - | chr4_1:31726416-31726435 | Msa0544000:intron | 45.0% |
| GGAGATTACACCATATTGGC+AGG | - | chr4_1:31726437-31726456 | Msa0544000:intron | 45.0% | |
| ACACCATATTGGCAGGAGAT+TGG | - | chr4_1:31726444-31726463 | Msa0544000:intron | 45.0% | |
| GTACCAATCTCCTGCCAATA+TGG | + | chr4_1:31726450-31726469 | None:intergenic | 45.0% | |
| !! | TTGAGGGCCGTTTTAGATAG+CGG | - | chr4_1:31726569-31726588 | Msa0544000:intron | 45.0% |
| AGTGATCTTCCTTTCCCTGA+TGG | - | chr4_1:31726593-31726612 | Msa0544000:intron | 45.0% | |
| ATGACAAGTCCATCAGGGAA+AGG | + | chr4_1:31726605-31726624 | None:intergenic | 45.0% | |
| ! | CCATTGATGACAAGTCCATC+AGG | + | chr4_1:31726611-31726630 | None:intergenic | 45.0% |
| !! | CCTGATGGACTTGTCATCAA+TGG | - | chr4_1:31726608-31726627 | Msa0544000:intron | 45.0% |
| !! | ATGTGTAAGCATTGGAACCG+CGG | + | chr4_1:31726634-31726653 | None:intergenic | 45.0% |
| ! | GTTAACCACTAGCCTGTAGA+CGG | - | chr4_1:31726840-31726859 | Msa0544000:intron | 45.0% |
| AACGAGAAAAGAGGGTAGAC+GGG | + | chr4_1:31726877-31726896 | None:intergenic | 45.0% | |
| CAGGGAAGACTTACAGATTC+CGG | - | chr4_1:31727050-31727069 | Msa0544000:CDS | 45.0% | |
| CAAGCTTCATCTTATGCCCT+TGG | + | chr4_1:31727117-31727136 | None:intergenic | 45.0% | |
| !! | ATGAAGCTTGTTGAGGTGGA+AGG | - | chr4_1:31727127-31727146 | Msa0544000:CDS | 45.0% |
| AACTCAGCAGCAAGTGTTTC+TGG | - | chr4_1:31727313-31727332 | Msa0544000:CDS | 45.0% | |
| GACCAACCACTGAAATCGAT+TGG | - | chr4_1:31727350-31727369 | Msa0544000:intron | 45.0% | |
| ! | GACCAATCGATTTCAGTGGT+TGG | + | chr4_1:31727355-31727374 | None:intergenic | 45.0% |
| ! | AACGGACCAATCGATTTCAG+TGG | + | chr4_1:31727359-31727378 | None:intergenic | 45.0% |
| ATTGGTCCGTTGAACAAGCT+CGG | - | chr4_1:31727368-31727387 | Msa0544000:intron | 45.0% | |
| ! | TAGAGACCGAGCTTGTTCAA+CGG | + | chr4_1:31727377-31727396 | None:intergenic | 45.0% |
| TTGAACAAGCTCGGTCTCTA+AGG | - | chr4_1:31727377-31727396 | Msa0544000:intron | 45.0% | |
| CAATCACTTGCACTAGACCT+CGG | - | chr4_1:31727550-31727569 | Msa0544000:intron | 45.0% | |
| ATGGAAAACATGCTCAGCAG+TGG | + | chr4_1:31727663-31727682 | None:intergenic | 45.0% | |
| ! | CCTGAGATCGAAAGTGTGTT+TGG | + | chr4_1:31727976-31727995 | None:intergenic | 45.0% |
| CCAAACACACTTTCGATCTC+AGG | - | chr4_1:31727973-31727992 | Msa0544000:CDS | 45.0% | |
| CTCAGGTTTCCGTGTTTCAT+AGG | - | chr4_1:31727990-31728009 | Msa0544000:CDS | 45.0% | |
| AGGAGGAATCTTACAGCAAG+TGG | - | chr4_1:31728111-31728130 | Msa0544000:CDS | 45.0% | |
| ! | GTTCCTTGTGGATTTGGTCT+TGG | + | chr4_1:31728138-31728157 | None:intergenic | 45.0% |
| TGGTAGGTTCCTTGTGGATT+TGG | + | chr4_1:31728144-31728163 | None:intergenic | 45.0% | |
| CCATAATGGTAGGTTCCTTG+TGG | + | chr4_1:31728150-31728169 | None:intergenic | 45.0% | |
| CCACAAGGAACCTACCATTA+TGG | - | chr4_1:31728147-31728166 | Msa0544000:CDS | 45.0% | |
| GTTTGAGTGGTGTATCAGCA+GGG | + | chr4_1:31728266-31728285 | None:intergenic | 45.0% | |
| AGTTTGAGTGGTGTATCAGC+AGG | + | chr4_1:31728267-31728286 | None:intergenic | 45.0% | |
| !!! | ATCGAAGGGGTGTTTTCACT+TGG | - | chr4_1:31728303-31728322 | Msa0544000:intron | 45.0% |
| TCTTCAGACTTCTGTCATGG+CGG | - | chr4_1:31728362-31728381 | Msa0544000:intron | 45.0% | |
| !! | CGATTTTCGAGGTTTTGTGG+AGG | - | chr4_1:31728386-31728405 | Msa0544000:intron | 45.0% |
| CACAGGTGTATCCAAAGTCA+TGG | - | chr4_1:31729037-31729056 | Msa0544000:intron | 45.0% | |
| TACAGTGCAGTCCATGACTT+TGG | + | chr4_1:31729051-31729070 | None:intergenic | 45.0% | |
| ATGTGGGAATGTGGAATGTG+AGG | - | chr4_1:31729085-31729104 | Msa0544000:intron | 45.0% | |
| GGAATGTGAGGTCTGAGAAT+TGG | - | chr4_1:31729097-31729116 | Msa0544000:intron | 45.0% | |
| GAATTGGGCAAGACAGTACT+TGG | - | chr4_1:31729113-31729132 | Msa0544000:intron | 45.0% | |
| !! | ATATAACTTTAATATTTATA+AGG | - | chr4_1:31728821-31728840 | Msa0544000:intron | 5.0% |
| !! | TATAACTTTAATATTTATAA+GGG | - | chr4_1:31728822-31728841 | Msa0544000:intron | 5.0% |
| !! | ATCAGAGGTGTTAGGCAGGT+TGG | + | chr4_1:31726022-31726041 | None:intergenic | 50.0% |
| !! | ATAGGAATGGAGTGCTGCAG+AGG | - | chr4_1:31726210-31726229 | Msa0544000:CDS | 50.0% |
| TGCTGCAGAGGAGAAACTCA+TGG | - | chr4_1:31726222-31726241 | Msa0544000:CDS | 50.0% | |
| AGGAGAAACTCATGGCAGGA+TGG | - | chr4_1:31726230-31726249 | Msa0544000:CDS | 50.0% | |
| GCCTTGTGAAATGCAAGCGA+AGG | + | chr4_1:31726347-31726366 | None:intergenic | 50.0% | |
| CTTGCATTTCACAAGGCAGC+AGG | - | chr4_1:31726350-31726369 | Msa0544000:intron | 50.0% | |
| TCTCCGGATGGAGGATCAAA+AGG | + | chr4_1:31726422-31726441 | None:intergenic | 50.0% | |
| ATGGTGTAATCTCCGGATGG+AGG | + | chr4_1:31726431-31726450 | None:intergenic | 50.0% | |
| GGGGCAGACGTATTCTGTAT+TGG | - | chr4_1:31727195-31727214 | Msa0544000:CDS | 50.0% | |
| CACAACAAGGTTCACCTCAC+AGG | - | chr4_1:31727258-31727277 | Msa0544000:CDS | 50.0% | |
| ! | TGAAGCATTCAGCACCTGTG+AGG | + | chr4_1:31727275-31727294 | None:intergenic | 50.0% |
| !! | AGTGTTTCTGGTCCTCTTCC+TGG | - | chr4_1:31727325-31727344 | Msa0544000:intron | 50.0% |
| ! | ATTTCAGTGGTTGGTCCACC+AGG | + | chr4_1:31727346-31727365 | None:intergenic | 50.0% |
| CGAGGTCTAGTGCAAGTGAT+TGG | + | chr4_1:31727552-31727571 | None:intergenic | 50.0% | |
| CTATACACCGCGAATTGCGA+AGG | + | chr4_1:31727726-31727745 | None:intergenic | 50.0% | |
| GGACCAAGACCAAATCCACA+AGG | - | chr4_1:31728132-31728151 | Msa0544000:CDS | 50.0% | |
| !! | GGCCGATTTTCGAGGTTTTG+TGG | - | chr4_1:31728383-31728402 | Msa0544000:intron | 50.0% |
| TGTTGCGCATGGAGGATACA+TGG | + | chr4_1:31728563-31728582 | None:intergenic | 50.0% | |
| TTCGATCATGTTGCGCATGG+AGG | + | chr4_1:31728571-31728590 | None:intergenic | 50.0% | |
| GGAATTTGCAGGATGGATGG+AGG | - | chr4_1:31728677-31728696 | Msa0544000:intron | 50.0% | |
| GACTGCACTGTACATGCCAT+TGG | - | chr4_1:31729059-31729078 | Msa0544000:intron | 50.0% | |
| CCACACTGAAGTGCATTGCT+TGG | + | chr4_1:31729201-31729220 | None:intergenic | 50.0% | |
| CCAAGCAATGCACTTCAGTG+TGG | - | chr4_1:31729198-31729217 | Msa0544000:intron | 50.0% | |
| CAATGCACTTCAGTGTGGCA+AGG | - | chr4_1:31729203-31729222 | Msa0544000:CDS | 50.0% | |
| ! | ACTGACTCAATCTGTGGCCC+TGG | + | chr4_1:31725397-31725416 | None:intergenic | 55.0% |
| GCAGAGGAGAAACTCATGGC+AGG | - | chr4_1:31726226-31726245 | Msa0544000:CDS | 55.0% | |
| GCATTTCACAAGGCAGCAGG+AGG | - | chr4_1:31726353-31726372 | Msa0544000:intron | 55.0% | |
| CACAAGGCAGCAGGAGGTTA+TGG | - | chr4_1:31726359-31726378 | Msa0544000:intron | 55.0% | |
| AAGGCAGCAGGAGGTTATGG+CGG | - | chr4_1:31726362-31726381 | Msa0544000:intron | 55.0% | |
| GGACTTGTCATCAATGGCCG+CGG | - | chr4_1:31726614-31726633 | Msa0544000:intron | 55.0% | |
| AGTAGCCGTCTACAGGCTAG+TGG | + | chr4_1:31726848-31726867 | None:intergenic | 55.0% | |
| GCATGTCAGTAGCCGTCTAC+AGG | + | chr4_1:31726855-31726874 | None:intergenic | 55.0% | |
| !! | GTTTCTGGTCCTCTTCCTGG+TGG | - | chr4_1:31727328-31727347 | Msa0544000:intron | 55.0% |
| TCACTTGCACTAGACCTCGG+TGG | - | chr4_1:31727553-31727572 | Msa0544000:intron | 55.0% | |
| CTGAAGATAACCACCGCCAC+CGG | + | chr4_1:31728349-31728368 | None:intergenic | 55.0% | |
| GCAGGATGGATGGAGGACAA+TGG | - | chr4_1:31728684-31728703 | Msa0544000:intron | 55.0% | |
| ACTTCAGTGTGGCAAGGCAG+TGG | - | chr4_1:31729209-31729228 | Msa0544000:CDS | 55.0% | |
| CTTCAGTGTGGCAAGGCAGT+GGG | - | chr4_1:31729210-31729229 | Msa0544000:CDS | 55.0% | |
| ! | GTGGTTGGTCCACCAGGAAG+AGG | + | chr4_1:31727340-31727359 | None:intergenic | 60.0% |
| AGTATCCCGGACAACCCCAC+CGG | - | chr4_1:31728327-31728346 | Msa0544000:intron | 60.0% | |
| AGATAACCACCGCCACCGGT+GGG | + | chr4_1:31728345-31728364 | None:intergenic | 60.0% | |
| AAGATAACCACCGCCACCGG+TGG | + | chr4_1:31728346-31728365 | None:intergenic | 60.0% | |
| !! | GTCATGGCGGCCGATTTTCG+AGG | - | chr4_1:31728375-31728394 | Msa0544000:intron | 60.0% |
| GATAACCACCGCCACCGGTG+GGG | + | chr4_1:31728344-31728363 | None:intergenic | 65.0% | |
| ATCCCGGACAACCCCACCGG+TGG | - | chr4_1:31728330-31728349 | Msa0544000:intron | 70.0% | |
| CGCCACCGGTGGGGTTGTCC+GGG | + | chr4_1:31728335-31728354 | None:intergenic | 75.0% | |
| CCGCCACCGGTGGGGTTGTC+CGG | + | chr4_1:31728336-31728355 | None:intergenic | 75.0% | |
| CCGGACAACCCCACCGGTGG+CGG | - | chr4_1:31728333-31728352 | Msa0544000:intron | 75.0% | |
| ! | GACAACCCCACCGGTGGCGG+TGG | - | chr4_1:31728336-31728355 | Msa0544000:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 31724872 | 31729524 | 31724872 | ID=Msa0544000;Name=Msa0544000 |
| chr4_1 | mRNA | 31724872 | 31729524 | 31724872 | ID=Msa0544000-mRNA-1;Parent=Msa0544000;Name=Msa0544000-mRNA-1;_AED=0.06;_eAED=0.06;_QI=184|1|1|1|1|1|8|279|538 |
| chr4_1 | exon | 31724872 | 31725354 | 31724872 | ID=Msa0544000-mRNA-1:exon:8201;Parent=Msa0544000-mRNA-1 |
| chr4_1 | exon | 31725630 | 31725708 | 31725630 | ID=Msa0544000-mRNA-1:exon:8200;Parent=Msa0544000-mRNA-1 |
| chr4_1 | exon | 31725918 | 31726283 | 31725918 | ID=Msa0544000-mRNA-1:exon:8199;Parent=Msa0544000-mRNA-1 |
| chr4_1 | exon | 31726998 | 31727343 | 31726998 | ID=Msa0544000-mRNA-1:exon:8198;Parent=Msa0544000-mRNA-1 |
| chr4_1 | exon | 31727728 | 31727830 | 31727728 | ID=Msa0544000-mRNA-1:exon:8197;Parent=Msa0544000-mRNA-1 |
| chr4_1 | exon | 31727912 | 31728182 | 31727912 | ID=Msa0544000-mRNA-1:exon:8196;Parent=Msa0544000-mRNA-1 |
| chr4_1 | exon | 31728917 | 31729026 | 31728917 | ID=Msa0544000-mRNA-1:exon:8195;Parent=Msa0544000-mRNA-1 |
| chr4_1 | exon | 31729203 | 31729524 | 31729203 | ID=Msa0544000-mRNA-1:exon:8194;Parent=Msa0544000-mRNA-1 |
| chr4_1 | five_prime_UTR | 31729341 | 31729524 | 31729341 | ID=Msa0544000-mRNA-1:five_prime_utr;Parent=Msa0544000-mRNA-1 |
| chr4_1 | CDS | 31729203 | 31729340 | 31729203 | ID=Msa0544000-mRNA-1:cds;Parent=Msa0544000-mRNA-1 |
| chr4_1 | CDS | 31728917 | 31729026 | 31728917 | ID=Msa0544000-mRNA-1:cds;Parent=Msa0544000-mRNA-1 |
| chr4_1 | CDS | 31727912 | 31728182 | 31727912 | ID=Msa0544000-mRNA-1:cds;Parent=Msa0544000-mRNA-1 |
| chr4_1 | CDS | 31727728 | 31727830 | 31727728 | ID=Msa0544000-mRNA-1:cds;Parent=Msa0544000-mRNA-1 |
| chr4_1 | CDS | 31726998 | 31727343 | 31726998 | ID=Msa0544000-mRNA-1:cds;Parent=Msa0544000-mRNA-1 |
| chr4_1 | CDS | 31725918 | 31726283 | 31725918 | ID=Msa0544000-mRNA-1:cds;Parent=Msa0544000-mRNA-1 |
| chr4_1 | CDS | 31725630 | 31725708 | 31725630 | ID=Msa0544000-mRNA-1:cds;Parent=Msa0544000-mRNA-1 |
| chr4_1 | CDS | 31725151 | 31725354 | 31725151 | ID=Msa0544000-mRNA-1:cds;Parent=Msa0544000-mRNA-1 |
| chr4_1 | three_prime_UTR | 31724872 | 31725150 | 31724872 | ID=Msa0544000-mRNA-1:three_prime_utr;Parent=Msa0544000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
