AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0514580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0514580 MtrunA17_Chr3g0123001 100.000 207 0 0 1 207 1 207 6.16e-155 427
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0514580 AT3G25980.1 87.981 208 24 1 1 207 1 208 1.47e-136 381
Msa0514580 AT3G25980.2 85.577 208 25 2 1 207 1 204 1.54e-130 365
Msa0514580 AT3G25980.3 87.742 155 19 0 53 207 1 155 2.38e-101 290
Msa0514580 AT3G25980.4 87.742 155 19 0 53 207 1 155 2.38e-101 290

Find 71 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAAAGAGGATAATAAAAT+AGG 0.177521 3_4:-65317299 None:intergenic
GTGAAAGGATAGAGAAATTT+TGG 0.192674 3_4:-65317379 None:intergenic
AATTTAACCGCTCAGCTTTC+TGG 0.243002 3_4:+65317820 Msa0514580:CDS
CTTCCCTAAGAAAAGAATTA+TGG 0.282101 3_4:+65319359 Msa0514580:three_prime_UTR
CTGGCACAATCCACTTGATT+TGG 0.286625 3_4:-65319236 None:intergenic
ACGAAGAGTGATTATGTCTT+TGG 0.305082 3_4:-65317427 None:intergenic
AGCGGTTAAATTGGTTATAA+AGG 0.310452 3_4:-65317809 None:intergenic
AGAAAGCTGAGCGGTTAAAT+TGG 0.334716 3_4:-65317818 None:intergenic
TGCTGAAATTCCACCTTTCA+AGG 0.344954 3_4:-65318661 None:intergenic
AACCAGGATATGCTGCTAAC+AGG 0.352861 3_4:+65317571 Msa0514580:intron
GAAAAGAGGATAATAAAATA+GGG 0.362114 3_4:-65317298 None:intergenic
ACCTTCACAAAGCTTTCTTC+TGG 0.383617 3_4:-65317736 None:intergenic
TTCAGGTGTGTTTGATGTGT+TGG 0.386152 3_4:+65318912 Msa0514580:intron
GAATGCAGTTTCACCATTTG+TGG 0.390803 3_4:-65319003 None:intergenic
CGAGTTGGAAAGAAACTTGT+AGG 0.393604 3_4:-65317272 None:intergenic
TGTGGATTAGCAATCAGCTT+TGG 0.412638 3_4:-65318985 None:intergenic
ATTTCATAAAACTGAGTACT+AGG 0.414706 3_4:-65319414 None:intergenic
CGAAGCAATCTGCCTCATAA+TGG 0.420953 3_4:-65318762 None:intergenic
TCTATCCTTTCACTTGATCA+TGG 0.425196 3_4:+65317389 Msa0514580:exon
TTCATCCAAGCATGGCAAAT+AGG 0.430316 3_4:-65318792 None:intergenic
ACTGCATTCCTTTGATACTA+AGG 0.432948 3_4:+65319017 Msa0514580:CDS
AACAGAACCATGACAAGAAA+AGG 0.433807 3_4:-65319200 None:intergenic
TTTGTGAAGGTGAAGAAATA+TGG 0.439428 3_4:+65317748 Msa0514580:CDS
GTGAATAGAAAATTCACAAC+TGG 0.455373 3_4:-65319255 None:intergenic
TTGTAGGGGAAGCGCCTTAA+CGG 0.457513 3_4:-65317256 None:intergenic
TATCACCTATTTGCCATGCT+TGG 0.458416 3_4:+65318787 Msa0514580:CDS
GCAATCGTTAGCGAGTTCTT+CGG 0.465376 3_4:+65317459 Msa0514580:CDS
GGAAATCATGAGAGAGATAC+AGG 0.478386 3_4:+65318739 Msa0514580:CDS
AAAAGCAGAACTAGCCGTTA+AGG 0.490615 3_4:+65317242 Msa0514580:five_prime_UTR
AATCGAAAATGAGAGAAAAG+AGG 0.498748 3_4:-65317312 None:intergenic
GCTGATTGCTAATCCACAAA+TGG 0.506949 3_4:+65318990 Msa0514580:CDS
TCACTCTCAGTCCAAGTGAA+TGG 0.507147 3_4:-65318961 None:intergenic
AAAGACATAATCACTCTTCG+TGG 0.509870 3_4:+65317429 Msa0514580:CDS
TGTCGAGAAGGGCGAGTCAA+GGG 0.513652 3_4:+65318703 Msa0514580:CDS
TGATGCCATGATCAAGTGAA+AGG 0.520689 3_4:-65317394 None:intergenic
GATAAACACCTCGATTGTAA+AGG 0.522252 3_4:-65317714 None:intergenic
GAGAGATACAGGCCATTATG+AGG 0.523727 3_4:+65318750 Msa0514580:CDS
ATCATACAAGAACGACGAAT+GGG 0.527471 3_4:+65319149 Msa0514580:CDS
GAGTTGGAAAGAAACTTGTA+GGG 0.535132 3_4:-65317271 None:intergenic
TCCAGAAGAAAGCTTTGTGA+AGG 0.536393 3_4:+65317735 Msa0514580:CDS
TTGTCGAGAAGGGCGAGTCA+AGG 0.542198 3_4:+65318702 Msa0514580:CDS
TGATAACGAGGTTGTCGAGA+AGG 0.548204 3_4:+65318691 Msa0514580:CDS
TTCAGCATCCTTTACAATCG+AGG 0.552090 3_4:+65317706 Msa0514580:intron
TGAAAAGAATGGCTTGAAGC+TGG 0.556155 3_4:+65318587 Msa0514580:intron
AATAAAATAGGGATTCGAGT+TGG 0.557900 3_4:-65317287 None:intergenic
ATGTGGAAGTTCCATTCACT+TGG 0.563681 3_4:+65318950 Msa0514580:CDS
AAATTGCACCTTAGTATCAA+AGG 0.565710 3_4:-65319025 None:intergenic
GATAACGAGGTTGTCGAGAA+GGG 0.569913 3_4:+65318692 Msa0514580:CDS
GTTATAATGAGCAAGTCCAC+TGG 0.576805 3_4:+65318632 Msa0514580:CDS
TATCATACAAGAACGACGAA+TGG 0.597347 3_4:+65319148 Msa0514580:CDS
CCACTGGTGAAGTCCTTGAA+AGG 0.598488 3_4:+65318648 Msa0514580:CDS
CAGCATTGAGACTGATAACG+AGG 0.605364 3_4:+65318679 Msa0514580:CDS
TTTCATAAAACTGAGTACTA+GGG 0.607651 3_4:-65319413 None:intergenic
CCTTTCAAGGACTTCACCAG+TGG 0.608166 3_4:-65318648 None:intergenic
CTGGTGAAGTCCTTGAAAGG+TGG 0.608400 3_4:+65318651 Msa0514580:CDS
TTTGGTTATGCAGATTCACA+AGG 0.610649 3_4:+65319113 Msa0514580:intron
CTTCAGTAAGCAACATCGGA+AGG 0.612019 3_4:-65317771 None:intergenic
TGGTTAGATGTGTACTGATG+TGG 0.620853 3_4:+65319279 Msa0514580:three_prime_UTR
TTGAAGCTGGCAAGTTACAG+AGG 0.628270 3_4:+65318600 Msa0514580:CDS
GATGTTGCTTACTGAAGATG+AGG 0.636613 3_4:+65317777 Msa0514580:CDS
GGCATATACTAACACAGATG+TGG 0.641456 3_4:+65318933 Msa0514580:CDS
TCATCTTCAGTAAGCAACAT+CGG 0.643466 3_4:-65317775 None:intergenic
ATACAAGGTTCATCCAAGCA+TGG 0.651912 3_4:-65318800 None:intergenic
CCATGACAAGAAAAGGACAC+AGG 0.655983 3_4:-65319193 None:intergenic
AAGGAAAACATACAAAAGCG+AGG 0.674439 3_4:-65319316 None:intergenic
GTCAAGGGAGAAGAGTGACA+AGG 0.685729 3_4:+65318718 Msa0514580:CDS
TGGACTTGCTCATTATAACA+AGG 0.691125 3_4:-65318628 None:intergenic
AGTTGGAAAGAAACTTGTAG+GGG 0.706272 3_4:-65317270 None:intergenic
TGACAAGAAAAGGACACAGG+CGG 0.707083 3_4:-65319190 None:intergenic
ATGTTGCTTACTGAAGATGA+GGG 0.718973 3_4:+65317778 Msa0514580:CDS
TTAGTTACCAGAAAGCTGAG+CGG 0.758740 3_4:-65317827 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTAAAATCTCAATATTA+TGG - chr3_4:65318465-65318484 None:intergenic 10.0%
!! AATTGATAAAATTTAAGTGT+TGG + chr3_4:65317925-65317944 Msa0514580:intron 15.0%
!! ATTGATAAAATTTAAGTGTT+GGG + chr3_4:65317926-65317945 Msa0514580:intron 15.0%
!!! TTTTTTTGTGATATCATTTT+AGG + chr3_4:65318272-65318291 Msa0514580:intron 15.0%
!!! ATTTTAATAATGTTCTGTTA+TGG + chr3_4:65318475-65318494 Msa0514580:intron 15.0%
!! GAAAAGAGGATAATAAAATA+GGG - chr3_4:65317301-65317320 None:intergenic 20.0%
!! AGAAAAGAGGATAATAAAAT+AGG - chr3_4:65317302-65317321 None:intergenic 20.0%
!!! TAGAGAAATTTTGGTAATTT+TGG - chr3_4:65317373-65317392 None:intergenic 20.0%
!!! TTTTGTGATATTGATTAACA+AGG + chr3_4:65317657-65317676 Msa0514580:intron 20.0%
!!! TTTGTGATATTGATTAACAA+GGG + chr3_4:65317658-65317677 Msa0514580:intron 20.0%
!!! AAGGGTTTTGTTTATTTTAT+TGG + chr3_4:65317676-65317695 Msa0514580:intron 20.0%
!!! AGGGTTTTGTTTATTTTATT+GGG + chr3_4:65317677-65317696 Msa0514580:intron 20.0%
!! TTATAGAAAGAAACAAAGTA+GGG - chr3_4:65317862-65317881 None:intergenic 20.0%
!! CAAAGTAAATTGGTTATAAA+GGG - chr3_4:65317897-65317916 None:intergenic 20.0%
!!! ACATGTATACTTTTTTGTTA+TGG + chr3_4:65318164-65318183 Msa0514580:intron 20.0%
!!! TTGTTTATACTATTTTGTTG+TGG + chr3_4:65318327-65318346 Msa0514580:intron 20.0%
!!! TTGCTTATACTATTTTGTTA+TGG + chr3_4:65318380-65318399 Msa0514580:intron 20.0%
!!! GCTATAAGTAATACTTATTT+TGG + chr3_4:65319095-65319114 Msa0514580:intron 20.0%
!!! TTTTGGTAATTTTGGTAGTT+GGG - chr3_4:65317365-65317384 None:intergenic 25.0%
!!! ATTTTGGTAATTTTGGTAGT+TGG - chr3_4:65317366-65317385 None:intergenic 25.0%
! TAGAAAAATGAGTGAAATTG+GGG - chr3_4:65317508-65317527 None:intergenic 25.0%
! GTAGAAAAATGAGTGAAATT+GGG - chr3_4:65317509-65317528 None:intergenic 25.0%
! TGTAGAAAAATGAGTGAAAT+TGG - chr3_4:65317510-65317529 None:intergenic 25.0%
! TAGCACAAAAAAATAATCAG+TGG - chr3_4:65317545-65317564 None:intergenic 25.0%
!! GTTTGATTCTCTTTGTTTAA+GGG + chr3_4:65317593-65317612 Msa0514580:intron 25.0%
! GTTATAGAAAGAAACAAAGT+AGG - chr3_4:65317863-65317882 None:intergenic 25.0%
! GTTATAAAGGGTTGTTAAAT+TGG - chr3_4:65317885-65317904 None:intergenic 25.0%
! GCAAAGTAAATTGGTTATAA+AGG - chr3_4:65317898-65317917 None:intergenic 25.0%
! TTTCTCTAAGCAAAGTAAAT+TGG - chr3_4:65317907-65317926 None:intergenic 25.0%
! CATTTCATTTGACAAAATCA+TGG + chr3_4:65317993-65318012 Msa0514580:intron 25.0%
!!! GTTTTTTTGTGATATCATTG+TGG + chr3_4:65318533-65318552 Msa0514580:intron 25.0%
! ATTCAAACAGTTTAATCATC+AGG - chr3_4:65318565-65318584 None:intergenic 25.0%
! TGTTTGAATGTTGAAAAGAA+TGG + chr3_4:65318576-65318595 Msa0514580:intron 25.0%
!! TTTTATCTCCTAGTTGAATT+TGG + chr3_4:65318881-65318900 Msa0514580:intron 25.0%
! CAGTCGATAAATAACAAAAT+TGG - chr3_4:65319058-65319077 None:intergenic 25.0%
! TAAGTATTACTTATAGCCAA+AGG - chr3_4:65319092-65319111 None:intergenic 25.0%
!!! GTTATTTTTTCCAAATCAAG+TGG + chr3_4:65319226-65319245 Msa0514580:three_prime_UTR 25.0%
!! TTGTGAATTTTCTATTCACA+TGG + chr3_4:65319259-65319278 Msa0514580:three_prime_UTR 25.0%
!! CAACCATAATTCTTTTCTTA+GGG - chr3_4:65319365-65319384 None:intergenic 25.0%
!! ACAACCATAATTCTTTTCTT+AGG - chr3_4:65319366-65319385 None:intergenic 25.0%
! TTTCATAAAACTGAGTACTA+GGG - chr3_4:65319416-65319435 None:intergenic 25.0%
! ATTTCATAAAACTGAGTACT+AGG - chr3_4:65319417-65319436 None:intergenic 25.0%
AATAAAATAGGGATTCGAGT+TGG - chr3_4:65317290-65317309 None:intergenic 30.0%
AATCGAAAATGAGAGAAAAG+AGG - chr3_4:65317315-65317334 None:intergenic 30.0%
! GTGAAAGGATAGAGAAATTT+TGG - chr3_4:65317382-65317401 None:intergenic 30.0%
AGAAAAATGAGTGAAATTGG+GGG - chr3_4:65317507-65317526 None:intergenic 30.0%
! GGTTTGATTCTCTTTGTTTA+AGG + chr3_4:65317592-65317611 Msa0514580:intron 30.0%
TTTGTGAAGGTGAAGAAATA+TGG + chr3_4:65317748-65317767 Msa0514580:CDS 30.0%
AGCGGTTAAATTGGTTATAA+AGG - chr3_4:65317812-65317831 None:intergenic 30.0%
AAAGAAACAAAGTAGGGTTA+GGG - chr3_4:65317856-65317875 None:intergenic 30.0%
! TAGATTTTGCAAAGTCAATC+TGG + chr3_4:65318048-65318067 Msa0514580:intron 30.0%
! GTTGACTCAATAATTTGAGT+AGG - chr3_4:65318250-65318269 None:intergenic 30.0%
CTCAATATTATGGTTCACAA+TGG - chr3_4:65318455-65318474 None:intergenic 30.0%
ACTCACTCTCAAATTCAATT+AGG - chr3_4:65318512-65318531 None:intergenic 30.0%
TAATTGAATTTGAGAGTGAG+TGG + chr3_4:65318511-65318530 Msa0514580:intron 30.0%
AACAGTTTAATCATCAGGAA+CGG - chr3_4:65318560-65318579 None:intergenic 30.0%
ACAAATAGCCAAATTCAACT+AGG - chr3_4:65318892-65318911 None:intergenic 30.0%
TGAATTTGGCTATTTGTTTC+AGG + chr3_4:65318895-65318914 Msa0514580:intron 30.0%
AAATTGCACCTTAGTATCAA+AGG - chr3_4:65319028-65319047 None:intergenic 30.0%
TTTGATACTAAGGTGCAATT+TGG + chr3_4:65319027-65319046 Msa0514580:intron 30.0%
!! TTGTTATTTATCGACTGACA+TGG + chr3_4:65319061-65319080 Msa0514580:intron 30.0%
GTGAATAGAAAATTCACAAC+TGG - chr3_4:65319258-65319277 None:intergenic 30.0%
! GCTTTTGTATGTTTTCCTTT+TGG + chr3_4:65319320-65319339 Msa0514580:three_prime_UTR 30.0%
! TTTTTGATATCCTTGCCAAA+AGG - chr3_4:65319338-65319357 None:intergenic 30.0%
CTTCCCTAAGAAAAGAATTA+TGG + chr3_4:65319359-65319378 Msa0514580:three_prime_UTR 30.0%
AGTTGGAAAGAAACTTGTAG+GGG - chr3_4:65317273-65317292 None:intergenic 35.0%
GAGTTGGAAAGAAACTTGTA+GGG - chr3_4:65317274-65317293 None:intergenic 35.0%
!! GTAATTTTGGTAGTTGGGAT+TGG - chr3_4:65317360-65317379 None:intergenic 35.0%
TCTATCCTTTCACTTGATCA+TGG + chr3_4:65317389-65317408 Msa0514580:exon 35.0%
ACGAAGAGTGATTATGTCTT+TGG - chr3_4:65317430-65317449 None:intergenic 35.0%
AAAGACATAATCACTCTTCG+TGG + chr3_4:65317429-65317448 Msa0514580:CDS 35.0%
!!! TTTTGTGCTATTTTCGAACC+AGG + chr3_4:65317555-65317574 Msa0514580:intron 35.0%
GATAAACACCTCGATTGTAA+AGG - chr3_4:65317717-65317736 None:intergenic 35.0%
TCATCTTCAGTAAGCAACAT+CGG - chr3_4:65317778-65317797 None:intergenic 35.0%
! ATGTTGCTTACTGAAGATGA+GGG + chr3_4:65317778-65317797 Msa0514580:CDS 35.0%
GAAAGAAACAAAGTAGGGTT+AGG - chr3_4:65317857-65317876 None:intergenic 35.0%
TATAATTCCCAACTCTCCAT+AGG - chr3_4:65317959-65317978 None:intergenic 35.0%
GTTTGTCAGAATCAGAATCA+CGG - chr3_4:65318078-65318097 None:intergenic 35.0%
! GAACTTTTAAGCCCATGATT+GGG - chr3_4:65318111-65318130 None:intergenic 35.0%
! TGAACTTTTAAGCCCATGAT+TGG - chr3_4:65318112-65318131 None:intergenic 35.0%
! AAGCCTTATCCATGTAAGTT+GGG + chr3_4:65318207-65318226 Msa0514580:intron 35.0%
TAACCCAACTTACATGGATA+AGG - chr3_4:65318213-65318232 None:intergenic 35.0%
TCTACATAACCCAACTTACA+TGG - chr3_4:65318219-65318238 None:intergenic 35.0%
GCAAAAGTGAACATGTTTAC+AGG - chr3_4:65318364-65318383 None:intergenic 35.0%
! TGGACTTGCTCATTATAACA+AGG - chr3_4:65318631-65318650 None:intergenic 35.0%
ACTGCATTCCTTTGATACTA+AGG + chr3_4:65319017-65319036 Msa0514580:CDS 35.0%
TTTGGTTATGCAGATTCACA+AGG + chr3_4:65319113-65319132 Msa0514580:intron 35.0%
TATCATACAAGAACGACGAA+TGG + chr3_4:65319148-65319167 Msa0514580:CDS 35.0%
ATCATACAAGAACGACGAAT+GGG + chr3_4:65319149-65319168 Msa0514580:CDS 35.0%
AACAGAACCATGACAAGAAA+AGG - chr3_4:65319203-65319222 None:intergenic 35.0%
AAGGAAAACATACAAAAGCG+AGG - chr3_4:65319319-65319338 None:intergenic 35.0%
! TGTATGTTTTCCTTTTGGCA+AGG + chr3_4:65319325-65319344 Msa0514580:three_prime_UTR 35.0%
!!! TAACGGCTAGTTCTGCTTTT+TGG - chr3_4:65317242-65317261 None:intergenic 40.0%
AAAAGCAGAACTAGCCGTTA+AGG + chr3_4:65317242-65317261 Msa0514580:five_prime_UTR 40.0%
! CGAGTTGGAAAGAAACTTGT+AGG - chr3_4:65317275-65317294 None:intergenic 40.0%
TGATGCCATGATCAAGTGAA+AGG - chr3_4:65317397-65317416 None:intergenic 40.0%
TTCAGCATCCTTTACAATCG+AGG + chr3_4:65317706-65317725 Msa0514580:intron 40.0%
! TCCAGAAGAAAGCTTTGTGA+AGG + chr3_4:65317735-65317754 Msa0514580:CDS 40.0%
ACCTTCACAAAGCTTTCTTC+TGG - chr3_4:65317739-65317758 None:intergenic 40.0%
! GATGTTGCTTACTGAAGATG+AGG + chr3_4:65317777-65317796 Msa0514580:CDS 40.0%
AGAAAGCTGAGCGGTTAAAT+TGG - chr3_4:65317821-65317840 None:intergenic 40.0%
AATTTAACCGCTCAGCTTTC+TGG + chr3_4:65317820-65317839 Msa0514580:CDS 40.0%
TTAGTTACCAGAAAGCTGAG+CGG - chr3_4:65317830-65317849 None:intergenic 40.0%
ACAGTTACCTATGGAGAGTT+GGG + chr3_4:65317949-65317968 Msa0514580:intron 40.0%
ACTCATAGTGAACCCAATCA+TGG + chr3_4:65318096-65318115 Msa0514580:intron 40.0%
CTCATAGTGAACCCAATCAT+GGG + chr3_4:65318097-65318116 Msa0514580:intron 40.0%
CATGGATAAGGCTTGATTGT+TGG - chr3_4:65318201-65318220 None:intergenic 40.0%
! CAAGCCTTATCCATGTAAGT+TGG + chr3_4:65318206-65318225 Msa0514580:intron 40.0%
! GAGAGTGAGTGATTTTTCTG+AGG + chr3_4:65318427-65318446 Msa0514580:intron 40.0%
TGAAAAGAATGGCTTGAAGC+TGG + chr3_4:65318587-65318606 Msa0514580:intron 40.0%
GTTATAATGAGCAAGTCCAC+TGG + chr3_4:65318632-65318651 Msa0514580:CDS 40.0%
TGCTGAAATTCCACCTTTCA+AGG - chr3_4:65318664-65318683 None:intergenic 40.0%
GGAAATCATGAGAGAGATAC+AGG + chr3_4:65318739-65318758 Msa0514580:CDS 40.0%
TATCACCTATTTGCCATGCT+TGG + chr3_4:65318787-65318806 Msa0514580:CDS 40.0%
TTCATCCAAGCATGGCAAAT+AGG - chr3_4:65318795-65318814 None:intergenic 40.0%
ATACAAGGTTCATCCAAGCA+TGG - chr3_4:65318803-65318822 None:intergenic 40.0%
TCAAAGAGTGACAGCATACA+AGG - chr3_4:65318818-65318837 None:intergenic 40.0%
TTCAGGTGTGTTTGATGTGT+TGG + chr3_4:65318912-65318931 Msa0514580:intron 40.0%
GGCATATACTAACACAGATG+TGG + chr3_4:65318933-65318952 Msa0514580:CDS 40.0%
ATGTGGAAGTTCCATTCACT+TGG + chr3_4:65318950-65318969 Msa0514580:CDS 40.0%
!! TGTGGATTAGCAATCAGCTT+TGG - chr3_4:65318988-65319007 None:intergenic 40.0%
GCTGATTGCTAATCCACAAA+TGG + chr3_4:65318990-65319009 Msa0514580:CDS 40.0%
GAATGCAGTTTCACCATTTG+TGG - chr3_4:65319006-65319025 None:intergenic 40.0%
GACTGACATGGTTTATCCTT+TGG + chr3_4:65319073-65319092 Msa0514580:intron 40.0%
! TGGTTAGATGTGTACTGATG+TGG + chr3_4:65319279-65319298 Msa0514580:three_prime_UTR 40.0%
GCAATCGTTAGCGAGTTCTT+CGG + chr3_4:65317459-65317478 Msa0514580:CDS 45.0%
AACCAGGATATGCTGCTAAC+AGG + chr3_4:65317571-65317590 Msa0514580:intron 45.0%
AACCTGTTAGCAGCATATCC+TGG - chr3_4:65317576-65317595 None:intergenic 45.0%
CTTCAGTAAGCAACATCGGA+AGG - chr3_4:65317774-65317793 None:intergenic 45.0%
! AGTGTTGGGACAGTTACCTA+TGG + chr3_4:65317940-65317959 Msa0514580:intron 45.0%
GACAGTTACCTATGGAGAGT+TGG + chr3_4:65317948-65317967 Msa0514580:intron 45.0%
TTGAAGCTGGCAAGTTACAG+AGG + chr3_4:65318600-65318619 Msa0514580:CDS 45.0%
! CAGCATTGAGACTGATAACG+AGG + chr3_4:65318679-65318698 Msa0514580:CDS 45.0%
! TGATAACGAGGTTGTCGAGA+AGG + chr3_4:65318691-65318710 Msa0514580:CDS 45.0%
GATAACGAGGTTGTCGAGAA+GGG + chr3_4:65318692-65318711 Msa0514580:CDS 45.0%
GAGAGATACAGGCCATTATG+AGG + chr3_4:65318750-65318769 Msa0514580:CDS 45.0%
CGAAGCAATCTGCCTCATAA+TGG - chr3_4:65318765-65318784 None:intergenic 45.0%
TCACTCTCAGTCCAAGTGAA+TGG - chr3_4:65318964-65318983 None:intergenic 45.0%
TGACAAGAAAAGGACACAGG+CGG - chr3_4:65319193-65319212 None:intergenic 45.0%
CCATGACAAGAAAAGGACAC+AGG - chr3_4:65319196-65319215 None:intergenic 45.0%
! CCTGTGTCCTTTTCTTGTCA+TGG + chr3_4:65319193-65319212 Msa0514580:three_prime_UTR 45.0%
CTGGCACAATCCACTTGATT+TGG - chr3_4:65319239-65319258 None:intergenic 45.0%
!! TTGTAGGGGAAGCGCCTTAA+CGG - chr3_4:65317259-65317278 None:intergenic 50.0%
CCTTTCAAGGACTTCACCAG+TGG - chr3_4:65318651-65318670 None:intergenic 50.0%
CCACTGGTGAAGTCCTTGAA+AGG + chr3_4:65318648-65318667 Msa0514580:CDS 50.0%
CTGGTGAAGTCCTTGAAAGG+TGG + chr3_4:65318651-65318670 Msa0514580:CDS 50.0%
GTCAAGGGAGAAGAGTGACA+AGG + chr3_4:65318718-65318737 Msa0514580:CDS 50.0%
TTGTCGAGAAGGGCGAGTCA+AGG + chr3_4:65318702-65318721 Msa0514580:CDS 55.0%
TGTCGAGAAGGGCGAGTCAA+GGG + chr3_4:65318703-65318722 Msa0514580:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 65317233 65319450 65317233 ID=Msa0514580;Name=Msa0514580
chr3_4 mRNA 65317233 65319450 65317233 ID=Msa0514580-mRNA-1;Parent=Msa0514580;Name=Msa0514580-mRNA-1;_AED=0.19;_eAED=0.19;_QI=175|1|1|1|1|1|6|268|207
chr3_4 exon 65317233 65317480 65317233 ID=Msa0514580-mRNA-1:exon:16659;Parent=Msa0514580-mRNA-1
chr3_4 exon 65317577 65317592 65317577 ID=Msa0514580-mRNA-1:exon:16660;Parent=Msa0514580-mRNA-1
chr3_4 exon 65317711 65317841 65317711 ID=Msa0514580-mRNA-1:exon:16661;Parent=Msa0514580-mRNA-1
chr3_4 exon 65318594 65318818 65318594 ID=Msa0514580-mRNA-1:exon:16662;Parent=Msa0514580-mRNA-1
chr3_4 exon 65318917 65319038 65318917 ID=Msa0514580-mRNA-1:exon:16663;Parent=Msa0514580-mRNA-1
chr3_4 exon 65319126 65319450 65319126 ID=Msa0514580-mRNA-1:exon:16664;Parent=Msa0514580-mRNA-1
chr3_4 five_prime_UTR 65317233 65317407 65317233 ID=Msa0514580-mRNA-1:five_prime_utr;Parent=Msa0514580-mRNA-1
chr3_4 CDS 65317408 65317480 65317408 ID=Msa0514580-mRNA-1:cds;Parent=Msa0514580-mRNA-1
chr3_4 CDS 65317577 65317592 65317577 ID=Msa0514580-mRNA-1:cds;Parent=Msa0514580-mRNA-1
chr3_4 CDS 65317711 65317841 65317711 ID=Msa0514580-mRNA-1:cds;Parent=Msa0514580-mRNA-1
chr3_4 CDS 65318594 65318818 65318594 ID=Msa0514580-mRNA-1:cds;Parent=Msa0514580-mRNA-1
chr3_4 CDS 65318917 65319038 65318917 ID=Msa0514580-mRNA-1:cds;Parent=Msa0514580-mRNA-1
chr3_4 CDS 65319126 65319182 65319126 ID=Msa0514580-mRNA-1:cds;Parent=Msa0514580-mRNA-1
chr3_4 three_prime_UTR 65319183 65319450 65319183 ID=Msa0514580-mRNA-1:three_prime_utr;Parent=Msa0514580-mRNA-1
Gene Sequence

>Msa0514580

ATGGCATCAAAAACAGTTACCAAAGACATAATCACTCTTCGTGGTTCTGCAGCAATCGTTAGCGAGTTCTTCGGATATGCTGCTAACAGCATCCTTTACAATCGAGGTGTTTATCCAGAAGAAAGCTTTGTGAAGGTGAAGAAATATGGCCTTCCGATGTTGCTTACTGAAGATGAGGGTGTTAAGTCCTTTATAACCAATTTAACCGCTCAGCTTTCTGAATGGCTTGAAGCTGGCAAGTTACAGAGGATTGTCCTTGTTATAATGAGCAAGTCCACTGGTGAAGTCCTTGAAAGGTGGAATTTCAGCATTGAGACTGATAACGAGGTTGTCGAGAAGGGCGAGTCAAGGGAGAAGAGTGACAAGGAAATCATGAGAGAGATACAGGCCATTATGAGGCAGATTGCTTCGAGTATCACCTATTTGCCATGCTTGGATGAACCTTGTGTGTTTGATGTGTTGGCATATACTAACACAGATGTGGAAGTTCCATTCACTTGGACTGAGAGTGATCCAAAGCTGATTGCTAATCCACAAATGGTGAAACTGCATTCCTTTGATACTAAGATTCACAAGGTTGACACACTTGTATCATACAAGAACGACGAATGGGATGAGCAGTAA

Protein sequence

>Msa0514580

MASKTVTKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFITNLTAQLSEWLEAGKLQRIVLVIMSKSTGEVLERWNFSIETDNEVVEKGESREKSDKEIMREIQAIMRQIASSITYLPCLDEPCVFDVLAYTNTDVEVPFTWTESDPKLIANPQMVKLHSFDTKIHKVDTLVSYKNDEWDEQ*