AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0544480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0544480 MtrunA17_Chr4g0025311 97.098 448 11 2 1 447 1 447 0.0 889
Msa0544480 MtrunA17_Chr2g0322251 72.749 411 100 5 39 447 26 426 0.0 556
Msa0544480 MtrunA17_Chr7g0267811 75.426 411 97 4 37 447 27 433 0.0 552
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0544480 AT5G06390.1 71.047 449 115 5 3 447 1 438 0.0 578
Msa0544480 AT2G35860.1 75.795 409 86 5 41 447 33 430 0.0 570
Msa0544480 AT3G52370.2 74.510 408 88 4 41 447 82 474 0.0 560
Msa0544480 AT3G52370.1 74.510 408 88 4 41 447 29 421 0.0 556
Msa0544480 AT3G11700.1 68.874 453 123 5 3 447 1 443 0.0 553
Msa0544480 AT5G05650.1 58.696 92 34 1 325 416 2 89 4.23e-32 119

Find 145 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGGTTTACCCTTCCGTTCT+TGG 0.196546 4_1:+33077223 None:intergenic
TATAATGCTGTTAGAAGATT+TGG 0.205388 4_1:-33077450 Msa0544480:CDS
ATTCAAACACTGATACATTA+TGG 0.268025 4_1:-33077687 Msa0544480:CDS
ATCAACCTCCGGTGCACCTT+CGG 0.276459 4_1:+33078101 None:intergenic
GCCATGGATTGCGGCATCTA+TGG 0.291024 4_1:-33078720 Msa0544480:CDS
AGAGATGAATGATTGTTAAA+TGG 0.291033 4_1:+33078880 None:intergenic
TAACGAGATGGCGGATATTC+TGG 0.301192 4_1:-33077658 Msa0544480:CDS
TCGCAACAATGGTTGGTTAA+TGG 0.312344 4_1:-33078261 Msa0544480:CDS
CCATTACCTGGCGCTGGCGC+CGG 0.330810 4_1:+33077976 None:intergenic
TGATTAAGAGGAGTTTGTTT+AGG 0.340226 4_1:+33078927 None:intergenic
GCTGATGGGTCGGTTAAATT+CGG 0.358905 4_1:-33077375 Msa0544480:CDS
CTCCCATCGGTATAAATATC+CGG 0.363765 4_1:+33077321 None:intergenic
TTAGCCATAGCTTCATCATT+TGG 0.365438 4_1:+33077564 None:intergenic
CTGGCACCGGCGCCAGCGCC+AGG 0.367856 4_1:-33077982 Msa0544480:intron
AGGAGTTTGTTTAGGTGGTA+AGG 0.370348 4_1:+33078935 None:intergenic
ATTGGCTCCTGGACCTTCTC+TGG 0.374989 4_1:-33078001 Msa0544480:CDS
TCAACCTCCGGTGCACCTTC+GGG 0.377012 4_1:+33078102 None:intergenic
CAACGCACCTCTTCTTTGCT+TGG 0.384525 4_1:+33077188 None:intergenic
ATTTCTGTGCAAGGGATTGA+TGG 0.384864 4_1:-33077297 Msa0544480:CDS
AAAGGAGGAGGTTGTTGATA+AGG 0.385006 4_1:-33077253 Msa0544480:CDS
ACATAAACACAGGTAGCATT+TGG 0.391397 4_1:-33078790 Msa0544480:five_prime_UTR
GGGTTTACCCTTCCGTTCTT+GGG 0.397284 4_1:+33077224 None:intergenic
CCAGGCTTCTGCGGTGGCGG+TGG 0.404505 4_1:+33078054 None:intergenic
GACCCCACCATCATTTCAAC+GGG 0.406272 4_1:-33077731 Msa0544480:CDS
TGATAGTACATAATTTGTTC+CGG 0.408846 4_1:+33077507 None:intergenic
GGTTGCATTGTGAAAGTCTA+AGG 0.411365 4_1:+33079007 None:intergenic
TACTTTGAGATTGCCTCATA+AGG 0.412712 4_1:-33077412 Msa0544480:CDS
GTGAACCCGGTTCACTCAAC+TGG 0.414386 4_1:+33077529 None:intergenic
AGACCTGATGGTGTTATTCA+TGG 0.414707 4_1:-33078207 Msa0544480:CDS
TGAGCATCAGTTATTGATAC+AGG 0.416686 4_1:-33078295 Msa0544480:CDS
TCTTCAGCATCAACCTTATG+AGG 0.417041 4_1:+33077399 None:intergenic
CCACCGCCACCGCAGAAGCC+TGG 0.417408 4_1:-33078054 Msa0544480:CDS
ATTCGGGCATGGTGATGGTT+CGG 0.423960 4_1:-33077358 Msa0544480:CDS
ATAATGCTGTTAGAAGATTT+GGG 0.425540 4_1:-33077449 Msa0544480:CDS
TTTGTTTCCACATGAAGAAA+AGG 0.428260 4_1:-33077271 Msa0544480:CDS
AACGGACCAGTTGAGTGAAC+CGG 0.429059 4_1:-33077535 Msa0544480:CDS
TGCTTGGCCACAACCTTAGC+GGG 0.430153 4_1:+33077204 None:intergenic
TCGGGTCGACCCGCCTTTGT+TGG 0.439908 4_1:+33078335 None:intergenic
GGAAGAGCAGGCGGAGAGCC+AGG 0.439938 4_1:+33078036 None:intergenic
AAGGGCCAGGTAGTAGAAGT+TGG 0.443617 4_1:-33079112 Msa0544480:five_prime_UTR
CTCTCTTCAGTTTGATACTC+AGG 0.448810 4_1:+33077477 None:intergenic
ATCTTCATCTTCTTCTTCAA+CGG 0.450047 4_1:-33078628 Msa0544480:CDS
CAAGATCTCGTTCTAGAGCT+TGG 0.454955 4_1:+33078460 None:intergenic
CAGATCCATTGATTCGTGTT+GGG 0.457295 4_1:+33078361 None:intergenic
GTTAAATTCGGGCATGGTGA+TGG 0.463040 4_1:-33077363 Msa0544480:CDS
TGAAGAGATTTAAGATTTCG+TGG 0.464244 4_1:+33078408 None:intergenic
GATGAGTAGGTTAGTATCAG+AGG 0.468619 4_1:-33077610 Msa0544480:CDS
GTTTGTTTAGGTGGTAAGGC+TGG 0.470066 4_1:+33078939 None:intergenic
TCCTGGACCTTCTCTGGCAC+CGG 0.471775 4_1:-33077995 Msa0544480:CDS
ACGTGGCGGGGTATGATTGA+AGG 0.478943 4_1:+33079032 None:intergenic
TTGTTAATTTGGTGATTAAG+AGG 0.484592 4_1:+33078915 None:intergenic
CTGATGGGTCGGTTAAATTC+GGG 0.490096 4_1:-33077374 Msa0544480:CDS
ATTCCATGAATAACACCATC+AGG 0.490128 4_1:+33078204 None:intergenic
ATTATCCCAACACGAATCAA+TGG 0.495473 4_1:-33078366 Msa0544480:CDS
AGGGCCAGGTAGTAGAAGTT+GGG 0.498425 4_1:-33079111 Msa0544480:five_prime_UTR
TAAGATTTCGTGGCTCTAAG+AGG 0.500509 4_1:+33078418 None:intergenic
GAGCCAGGCTTCTGCGGTGG+CGG 0.501128 4_1:+33078051 None:intergenic
AAGCGACAATGTTCTATGTC+GGG 0.503585 4_1:+33078317 None:intergenic
ACAGATCCATTGATTCGTGT+TGG 0.507168 4_1:+33078360 None:intergenic
GCTGGCGCCGGTGCCAGAGA+AGG 0.507236 4_1:+33077988 None:intergenic
TTGAAAGGCTTCTTATTCCA+AGG 0.507843 4_1:-33078182 Msa0544480:CDS
CAACGGGGAGGCACAGGTGA+AGG 0.509640 4_1:-33077715 Msa0544480:CDS
GACCCGGATATTTATACCGA+TGG 0.511882 4_1:-33077324 Msa0544480:CDS
GGGTAAACCCGCTAAGGTTG+TGG 0.515104 4_1:-33077211 Msa0544480:CDS
AAAGTCTAAGGACACGTGGC+GGG 0.517954 4_1:+33079019 None:intergenic
GGCGGAGAGCCAGGCTTCTG+CGG 0.518421 4_1:+33078045 None:intergenic
CTCTCCCAACTTCTACTACC+TGG 0.518428 4_1:+33079107 None:intergenic
AAGCTTCCATTACCTGGCGC+TGG 0.519647 4_1:+33077970 None:intergenic
GTGTTATTCATGGAATTGAA+AGG 0.521049 4_1:-33078197 Msa0544480:CDS
ACCATAGATGCCGCAATCCA+TGG 0.521880 4_1:+33078719 None:intergenic
AGCACCAAATGATGAAGCTA+TGG 0.522967 4_1:-33077568 Msa0544480:CDS
AAATGATGGTGGGGTCCACC+AGG 0.523892 4_1:+33077738 None:intergenic
ATAATTTGTTCCGGTGAACC+CGG 0.528069 4_1:+33077516 None:intergenic
CAAGCGACAATGTTCTATGT+CGG 0.531194 4_1:+33078316 None:intergenic
TTGCTTGGCCACAACCTTAG+CGG 0.531460 4_1:+33077203 None:intergenic
TTCGGCTTATTTGTTTGACC+CGG 0.531979 4_1:-33077340 Msa0544480:CDS
ATGAGTAGGTTAGTATCAGA+GGG 0.533753 4_1:-33077609 Msa0544480:CDS
GTGCCTCCCCGTTGAAATGA+TGG 0.534564 4_1:+33077724 None:intergenic
GTTGAGTGAACCGGGTTCAC+CGG 0.536161 4_1:-33077526 Msa0544480:CDS
TCCCATCGGTATAAATATCC+GGG 0.540655 4_1:+33077322 None:intergenic
TTAAGAGGAGTTTGTTTAGG+TGG 0.541132 4_1:+33078930 None:intergenic
AAGTCATCTTGAACAGACCT+TGG 0.542381 4_1:+33078165 None:intergenic
ACCCGGATATTTATACCGAT+GGG 0.543543 4_1:-33077323 Msa0544480:CDS
TGAAACATCGCAACAATGGT+TGG 0.551947 4_1:-33078268 Msa0544480:CDS
CTCCCCGTTGAAATGATGGT+GGG 0.553409 4_1:+33077728 None:intergenic
TCATTTCAACGGGGAGGCAC+AGG 0.554998 4_1:-33077721 Msa0544480:CDS
TGAGTCCTCGGATCAACCTC+CGG 0.557499 4_1:+33078090 None:intergenic
TTAGAAGATTTGGGAAGGTG+AGG 0.560046 4_1:-33077440 Msa0544480:CDS
AAGATGACTTTAACCGTAGG+AGG 0.563097 4_1:-33078152 Msa0544480:CDS
GCCGGTGCCAGAGAAGGTCC+AGG 0.566022 4_1:+33077994 None:intergenic
GGACCCCACCATCATTTCAA+CGG 0.574499 4_1:-33077732 Msa0544480:CDS
CGTGGCGGGGTATGATTGAA+GGG 0.575222 4_1:+33079033 None:intergenic
GTTTCCACATGAAGAAAAGG+AGG 0.575869 4_1:-33077268 Msa0544480:CDS
ACGGACCAGTTGAGTGAACC+GGG 0.578352 4_1:-33077534 Msa0544480:CDS
TCCACATGAAGAAAAGGAGG+AGG 0.578404 4_1:-33077265 Msa0544480:CDS
AATTAAACCCGAAGGTGCAC+CGG 0.579641 4_1:-33078109 Msa0544480:CDS
ATGGGAGGATTTCTGTGCAA+GGG 0.579676 4_1:-33077305 Msa0544480:CDS
TGCTGTTAGAAGATTTGGGA+AGG 0.581041 4_1:-33077445 Msa0544480:CDS
CAAATGAAACATCGCAACAA+TGG 0.583491 4_1:-33078272 Msa0544480:CDS
ACGGAAGGGTAAACCCGCTA+AGG 0.584103 4_1:-33077217 Msa0544480:CDS
TTGAACTAGGAGTTGAGTGT+GGG 0.586235 4_1:+33079076 None:intergenic
ATGGGTAAATTAAGAAGTGT+CGG 0.587677 4_1:+33078986 None:intergenic
GGTTGTGACCCAAGAACGGA+AGG 0.595032 4_1:-33077232 Msa0544480:CDS
GAACTTAACGTCGTTAGCGA+CGG 0.595166 4_1:-33077634 Msa0544480:CDS
GATCTGTATCCAACAAAGGC+GGG 0.596886 4_1:-33078344 Msa0544480:CDS
CCTCCCCGTTGAAATGATGG+TGG 0.597615 4_1:+33077727 None:intergenic
AGGTTGATCCGAGGACTCAT+CGG 0.600481 4_1:-33078086 Msa0544480:CDS
GGGTCGGTTAAATTCGGGCA+TGG 0.604050 4_1:-33077369 Msa0544480:CDS
GGAGAGCCAGGCTTCTGCGG+TGG 0.607581 4_1:+33078048 None:intergenic
ATGATTGAAGGGGAAGAGTG+CGG 0.612828 4_1:+33079044 None:intergenic
ATTGCTGCAATTAAACCCGA+AGG 0.616715 4_1:-33078117 Msa0544480:CDS
TTATGGAGGTTATAACGAGA+TGG 0.617430 4_1:-33077670 Msa0544480:CDS
CGTTAGCGACGGAGATGAGT+AGG 0.618054 4_1:-33077623 Msa0544480:CDS
TAGAAACAAGACTCCTCCTA+CGG 0.619567 4_1:+33078139 None:intergenic
GATGGGAGGATTTCTGTGCA+AGG 0.626437 4_1:-33077306 Msa0544480:CDS
TCCCCGTTGAAATGATGGTG+GGG 0.631232 4_1:+33077729 None:intergenic
ATAAGGTTGTGACCCAAGAA+CGG 0.632729 4_1:-33077236 Msa0544480:CDS
CGGATATTTATACCGATGGG+AGG 0.638532 4_1:-33077320 Msa0544480:CDS
TTGCACAGAAATCCTCCCAT+CGG 0.638634 4_1:+33077308 None:intergenic
GTTGATGCTGAAGAAGCTGA+TGG 0.639771 4_1:-33077390 Msa0544480:CDS
GGATCTGTATCCAACAAAGG+CGG 0.643730 4_1:-33078345 Msa0544480:CDS
GCGGTGTGTGACATTGAACT+AGG 0.652046 4_1:+33079063 None:intergenic
AATGATGTTACAAGACCTGA+TGG 0.656426 4_1:-33078219 Msa0544480:CDS
GAAAGTCTAAGGACACGTGG+CGG 0.661619 4_1:+33079018 None:intergenic
AATGGATCTGTATCCAACAA+AGG 0.662344 4_1:-33078348 Msa0544480:CDS
TAAACCCGAAGGTGCACCGG+AGG 0.664246 4_1:-33078106 Msa0544480:CDS
TGCTGAAGAAGCTGATGGGT+CGG 0.664468 4_1:-33077385 Msa0544480:CDS
ATTGAACTAGGAGTTGAGTG+TGG 0.666024 4_1:+33079075 None:intergenic
GTTGTGGCCAAGCAAAGAAG+AGG 0.666635 4_1:-33077195 Msa0544480:CDS
TTCAAGATGACTTTAACCGT+AGG 0.668564 4_1:-33078155 Msa0544480:CDS
TTGATGCTGAAGAAGCTGAT+GGG 0.675714 4_1:-33077389 Msa0544480:CDS
CAAACACTGATACATTATGG+AGG 0.675816 4_1:-33077684 Msa0544480:CDS
CCACCATCATTTCAACGGGG+AGG 0.679312 4_1:-33077727 Msa0544480:CDS
ATAAACATAAACATAAACAC+AGG 0.685540 4_1:-33078800 Msa0544480:five_prime_UTR
TGAACTAGGAGTTGAGTGTG+GGG 0.692022 4_1:+33079077 None:intergenic
AAGTCTAAGGACACGTGGCG+GGG 0.692142 4_1:+33079020 None:intergenic
GTGGCGGGGTATGATTGAAG+GGG 0.693098 4_1:+33079034 None:intergenic
TGGAGGTTATAACGAGATGG+CGG 0.695354 4_1:-33077667 Msa0544480:CDS
AGCTATGGCTAAGTTAACAA+CGG 0.711535 4_1:-33077553 Msa0544480:CDS
AAGTGAAGAAGAAGAACGTG+CGG 0.711745 4_1:+33078679 None:intergenic
CAGACACTAGAAGACACTGT+CGG 0.714382 4_1:-33078516 Msa0544480:CDS
TGTGAAAGTCTAAGGACACG+TGG 0.716335 4_1:+33079015 None:intergenic
GTGCACCGGAGGTTGATCCG+AGG 0.717893 4_1:-33078095 Msa0544480:CDS
GTTGTGACCCAAGAACGGAA+GGG 0.741038 4_1:-33077231 Msa0544480:CDS
ACCCCACCATCATTTCAACG+GGG 0.810320 4_1:-33077730 Msa0544480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTTTTTTTAATCTTTG+GGG + chr4_1:33077336-33077355 None:intergenic 15.0%
!!! GTTTTGTTTTTTTAATCTTT+GGG + chr4_1:33077337-33077356 None:intergenic 15.0%
!!! TTTTGTTTTTTTAATCTTTG+GGG + chr4_1:33077336-33077355 None:intergenic 15.0%
!!! GTTTTGTTTTTTTAATCTTT+GGG + chr4_1:33077337-33077356 None:intergenic 15.0%
!!! GGTTTTGTTTTTTTAATCTT+TGG + chr4_1:33077338-33077357 None:intergenic 20.0%
!! ATAAACATAAACATAAACAC+AGG - chr4_1:33077495-33077514 Msa0544480:CDS 20.0%
!! AAAACCAAAACCTTAAAAAA+TGG - chr4_1:33077553-33077572 Msa0544480:CDS 20.0%
!! TTGAATATAATCAGATGTAT+TGG + chr4_1:33078436-33078455 None:intergenic 20.0%
!!! GGTTTTGTTTTTTTAATCTT+TGG + chr4_1:33077338-33077357 None:intergenic 20.0%
!! ATAAACATAAACATAAACAC+AGG - chr4_1:33077495-33077514 Msa0544480:CDS 20.0%
!! AAAACCAAAACCTTAAAAAA+TGG - chr4_1:33077553-33077572 Msa0544480:CDS 20.0%
!! TTGAATATAATCAGATGTAT+TGG + chr4_1:33078436-33078455 None:intergenic 20.0%
!!! TTTTTTAATCTTTGGGGTAT+GGG + chr4_1:33077330-33077349 None:intergenic 25.0%
!!! TTTTTTTAATCTTTGGGGTA+TGG + chr4_1:33077331-33077350 None:intergenic 25.0%
!! TTGTTAATTTGGTGATTAAG+AGG + chr4_1:33077383-33077402 None:intergenic 25.0%
!!! GTTTTGTTGTGTTGTTAATT+TGG + chr4_1:33077394-33077413 None:intergenic 25.0%
! AGAGATGAATGATTGTTAAA+TGG + chr4_1:33077418-33077437 None:intergenic 25.0%
!!! AGAGGAAAGTTTTGAAATTT+GGG + chr4_1:33077862-33077881 None:intergenic 25.0%
!!! AAGAGGAAAGTTTTGAAATT+TGG + chr4_1:33077863-33077882 None:intergenic 25.0%
!!! TTGTAACTAACTTGTTTTTC+AGG - chr4_1:33078533-33078552 Msa0544480:CDS 25.0%
! ATTCAAACACTGATACATTA+TGG - chr4_1:33078608-33078627 Msa0544480:CDS 25.0%
!!! TGATAGTACATAATTTGTTC+CGG + chr4_1:33078791-33078810 None:intergenic 25.0%
! TATAATGCTGTTAGAAGATT+TGG - chr4_1:33078845-33078864 Msa0544480:five_prime_UTR 25.0%
! ATAATGCTGTTAGAAGATTT+GGG - chr4_1:33078846-33078865 Msa0544480:five_prime_UTR 25.0%
!!! TTTTTTAATCTTTGGGGTAT+GGG + chr4_1:33077330-33077349 None:intergenic 25.0%
!!! TTTTTTTAATCTTTGGGGTA+TGG + chr4_1:33077331-33077350 None:intergenic 25.0%
!! TTGTTAATTTGGTGATTAAG+AGG + chr4_1:33077383-33077402 None:intergenic 25.0%
!!! GTTTTGTTGTGTTGTTAATT+TGG + chr4_1:33077394-33077413 None:intergenic 25.0%
! AGAGATGAATGATTGTTAAA+TGG + chr4_1:33077418-33077437 None:intergenic 25.0%
!!! AGAGGAAAGTTTTGAAATTT+GGG + chr4_1:33077862-33077881 None:intergenic 25.0%
!!! AAGAGGAAAGTTTTGAAATT+TGG + chr4_1:33077863-33077882 None:intergenic 25.0%
!!! TTGTAACTAACTTGTTTTTC+AGG - chr4_1:33078533-33078552 Msa0544480:CDS 25.0%
! ATTCAAACACTGATACATTA+TGG - chr4_1:33078608-33078627 Msa0544480:CDS 25.0%
!!! TGATAGTACATAATTTGTTC+CGG + chr4_1:33078791-33078810 None:intergenic 25.0%
! TATAATGCTGTTAGAAGATT+TGG - chr4_1:33078845-33078864 Msa0544480:five_prime_UTR 25.0%
! ATAATGCTGTTAGAAGATTT+GGG - chr4_1:33078846-33078865 Msa0544480:five_prime_UTR 25.0%
! ATGGGTAAATTAAGAAGTGT+CGG + chr4_1:33077312-33077331 None:intergenic 30.0%
! TGATTAAGAGGAGTTTGTTT+AGG + chr4_1:33077371-33077390 None:intergenic 30.0%
!!! ATGGCCATTTTTTAAGGTTT+TGG + chr4_1:33077560-33077579 None:intergenic 30.0%
AAAACCTTAAAAAATGGCCA+TGG - chr4_1:33077559-33077578 Msa0544480:CDS 30.0%
ATCTTCATCTTCTTCTTCAA+CGG - chr4_1:33077667-33077686 Msa0544480:CDS 30.0%
! TGAAGAGATTTAAGATTTCG+TGG + chr4_1:33077890-33077909 None:intergenic 30.0%
! GTGTTATTCATGGAATTGAA+AGG - chr4_1:33078098-33078117 Msa0544480:CDS 30.0%
!!! TCTTCCTATTTTTGATGCAT+TGG - chr4_1:33078276-33078295 Msa0544480:CDS 30.0%
TTTGTTTCCACATGAAGAAA+AGG - chr4_1:33079024-33079043 Msa0544480:five_prime_UTR 30.0%
! ATGGGTAAATTAAGAAGTGT+CGG + chr4_1:33077312-33077331 None:intergenic 30.0%
! TGATTAAGAGGAGTTTGTTT+AGG + chr4_1:33077371-33077390 None:intergenic 30.0%
!!! ATGGCCATTTTTTAAGGTTT+TGG + chr4_1:33077560-33077579 None:intergenic 30.0%
AAAACCTTAAAAAATGGCCA+TGG - chr4_1:33077559-33077578 Msa0544480:CDS 30.0%
ATCTTCATCTTCTTCTTCAA+CGG - chr4_1:33077667-33077686 Msa0544480:CDS 30.0%
! TGAAGAGATTTAAGATTTCG+TGG + chr4_1:33077890-33077909 None:intergenic 30.0%
! GTGTTATTCATGGAATTGAA+AGG - chr4_1:33078098-33078117 Msa0544480:CDS 30.0%
!!! TCTTCCTATTTTTGATGCAT+TGG - chr4_1:33078276-33078295 Msa0544480:CDS 30.0%
TTTGTTTCCACATGAAGAAA+AGG - chr4_1:33079024-33079043 Msa0544480:five_prime_UTR 30.0%
! TTAAGAGGAGTTTGTTTAGG+TGG + chr4_1:33077368-33077387 None:intergenic 35.0%
ACATAAACACAGGTAGCATT+TGG - chr4_1:33077505-33077524 Msa0544480:CDS 35.0%
!!! CAATCCATGGCCATTTTTTA+AGG + chr4_1:33077566-33077585 None:intergenic 35.0%
! TAAAAAATGGCCATGGATTG+CGG - chr4_1:33077566-33077585 Msa0544480:CDS 35.0%
ATTATCCCAACACGAATCAA+TGG - chr4_1:33077929-33077948 Msa0544480:intron 35.0%
AATGGATCTGTATCCAACAA+AGG - chr4_1:33077947-33077966 Msa0544480:intron 35.0%
TGAGCATCAGTTATTGATAC+AGG - chr4_1:33078000-33078019 Msa0544480:CDS 35.0%
CAAATGAAACATCGCAACAA+TGG - chr4_1:33078023-33078042 Msa0544480:CDS 35.0%
AATGATGTTACAAGACCTGA+TGG - chr4_1:33078076-33078095 Msa0544480:CDS 35.0%
ATTCCATGAATAACACCATC+AGG + chr4_1:33078094-33078113 None:intergenic 35.0%
TTGAAAGGCTTCTTATTCCA+AGG - chr4_1:33078113-33078132 Msa0544480:CDS 35.0%
TTCAAGATGACTTTAACCGT+AGG - chr4_1:33078140-33078159 Msa0544480:CDS 35.0%
! TAATCAGATGTATTGGTGTC+TGG + chr4_1:33078429-33078448 None:intergenic 35.0%
CAAACACTGATACATTATGG+AGG - chr4_1:33078611-33078630 Msa0544480:CDS 35.0%
TTATGGAGGTTATAACGAGA+TGG - chr4_1:33078625-33078644 Msa0544480:CDS 35.0%
ATGAGTAGGTTAGTATCAGA+GGG - chr4_1:33078686-33078705 Msa0544480:CDS 35.0%
TTAGCCATAGCTTCATCATT+TGG + chr4_1:33078734-33078753 None:intergenic 35.0%
AGCTATGGCTAAGTTAACAA+CGG - chr4_1:33078742-33078761 Msa0544480:exon 35.0%
!! TACTTTGAGATTGCCTCATA+AGG - chr4_1:33078883-33078902 Msa0544480:five_prime_UTR 35.0%
! TTAAGAGGAGTTTGTTTAGG+TGG + chr4_1:33077368-33077387 None:intergenic 35.0%
ACATAAACACAGGTAGCATT+TGG - chr4_1:33077505-33077524 Msa0544480:CDS 35.0%
!!! CAATCCATGGCCATTTTTTA+AGG + chr4_1:33077566-33077585 None:intergenic 35.0%
! TAAAAAATGGCCATGGATTG+CGG - chr4_1:33077566-33077585 Msa0544480:CDS 35.0%
ATTATCCCAACACGAATCAA+TGG - chr4_1:33077929-33077948 Msa0544480:intron 35.0%
AATGGATCTGTATCCAACAA+AGG - chr4_1:33077947-33077966 Msa0544480:intron 35.0%
TGAGCATCAGTTATTGATAC+AGG - chr4_1:33078000-33078019 Msa0544480:CDS 35.0%
CAAATGAAACATCGCAACAA+TGG - chr4_1:33078023-33078042 Msa0544480:CDS 35.0%
AATGATGTTACAAGACCTGA+TGG - chr4_1:33078076-33078095 Msa0544480:CDS 35.0%
ATTCCATGAATAACACCATC+AGG + chr4_1:33078094-33078113 None:intergenic 35.0%
TTGAAAGGCTTCTTATTCCA+AGG - chr4_1:33078113-33078132 Msa0544480:CDS 35.0%
TTCAAGATGACTTTAACCGT+AGG - chr4_1:33078140-33078159 Msa0544480:CDS 35.0%
! TAATCAGATGTATTGGTGTC+TGG + chr4_1:33078429-33078448 None:intergenic 35.0%
CAAACACTGATACATTATGG+AGG - chr4_1:33078611-33078630 Msa0544480:CDS 35.0%
TTATGGAGGTTATAACGAGA+TGG - chr4_1:33078625-33078644 Msa0544480:CDS 35.0%
ATGAGTAGGTTAGTATCAGA+GGG - chr4_1:33078686-33078705 Msa0544480:CDS 35.0%
TTAGCCATAGCTTCATCATT+TGG + chr4_1:33078734-33078753 None:intergenic 35.0%
AGCTATGGCTAAGTTAACAA+CGG - chr4_1:33078742-33078761 Msa0544480:exon 35.0%
!! TACTTTGAGATTGCCTCATA+AGG - chr4_1:33078883-33078902 Msa0544480:five_prime_UTR 35.0%
TTGAACTAGGAGTTGAGTGT+GGG + chr4_1:33077222-33077241 None:intergenic 40.0%
ATTGAACTAGGAGTTGAGTG+TGG + chr4_1:33077223-33077242 None:intergenic 40.0%
GGTTGCATTGTGAAAGTCTA+AGG + chr4_1:33077291-33077310 None:intergenic 40.0%
! AGGAGTTTGTTTAGGTGGTA+AGG + chr4_1:33077363-33077382 None:intergenic 40.0%
AAGTGAAGAAGAAGAACGTG+CGG + chr4_1:33077619-33077638 None:intergenic 40.0%
!!! CGTTCTAGAGCTTGGTTTTT+TGG + chr4_1:33077830-33077849 None:intergenic 40.0%
!! TAAGATTTCGTGGCTCTAAG+AGG + chr4_1:33077880-33077899 None:intergenic 40.0%
!! CAGATCCATTGATTCGTGTT+GGG + chr4_1:33077937-33077956 None:intergenic 40.0%
!! ACAGATCCATTGATTCGTGT+TGG + chr4_1:33077938-33077957 None:intergenic 40.0%
AAGCGACAATGTTCTATGTC+GGG + chr4_1:33077981-33078000 None:intergenic 40.0%
CAAGCGACAATGTTCTATGT+CGG + chr4_1:33077982-33078001 None:intergenic 40.0%
TGAAACATCGCAACAATGGT+TGG - chr4_1:33078027-33078046 Msa0544480:CDS 40.0%
! TCGCAACAATGGTTGGTTAA+TGG - chr4_1:33078034-33078053 Msa0544480:CDS 40.0%
!! AGACCTGATGGTGTTATTCA+TGG - chr4_1:33078088-33078107 Msa0544480:CDS 40.0%
AAGTCATCTTGAACAGACCT+TGG + chr4_1:33078133-33078152 None:intergenic 40.0%
AAGATGACTTTAACCGTAGG+AGG - chr4_1:33078143-33078162 Msa0544480:CDS 40.0%
TAGAAACAAGACTCCTCCTA+CGG + chr4_1:33078159-33078178 None:intergenic 40.0%
ATTGCTGCAATTAAACCCGA+AGG - chr4_1:33078178-33078197 Msa0544480:CDS 40.0%
!! TTTTTCAACCGATGAGTCCT+CGG + chr4_1:33078220-33078239 None:intergenic 40.0%
TCAAAAATAGGAAGAGCAGG+CGG + chr4_1:33078271-33078290 None:intergenic 40.0%
GCATCAAAAATAGGAAGAGC+AGG + chr4_1:33078274-33078293 None:intergenic 40.0%
GGAGCCAATGCATCAAAAAT+AGG + chr4_1:33078283-33078302 None:intergenic 40.0%
!!! ATTTTTGATGCATTGGCTCC+TGG - chr4_1:33078283-33078302 Msa0544480:CDS 40.0%
GCTAAAAAGCTTCCATTACC+TGG + chr4_1:33078334-33078353 None:intergenic 40.0%
CATGTCAATTGTGTAGTGTC+TGG - chr4_1:33078488-33078507 Msa0544480:CDS 40.0%
! ACAAATTAGTTTCGAGCACC+CGG + chr4_1:33078517-33078536 None:intergenic 40.0%
!!! CTAACTTGTTTTTCAGGACC+TGG - chr4_1:33078539-33078558 Msa0544480:CDS 40.0%
GATGAGTAGGTTAGTATCAG+AGG - chr4_1:33078685-33078704 Msa0544480:CDS 40.0%
AGCACCAAATGATGAAGCTA+TGG - chr4_1:33078727-33078746 Msa0544480:exon 40.0%
!! ATAATTTGTTCCGGTGAACC+CGG + chr4_1:33078782-33078801 None:intergenic 40.0%
CTCTCTTCAGTTTGATACTC+AGG + chr4_1:33078821-33078840 None:intergenic 40.0%
TGCTGTTAGAAGATTTGGGA+AGG - chr4_1:33078850-33078869 Msa0544480:five_prime_UTR 40.0%
TTAGAAGATTTGGGAAGGTG+AGG - chr4_1:33078855-33078874 Msa0544480:five_prime_UTR 40.0%
TCTTCAGCATCAACCTTATG+AGG + chr4_1:33078899-33078918 None:intergenic 40.0%
TTGATGCTGAAGAAGCTGAT+GGG - chr4_1:33078906-33078925 Msa0544480:five_prime_UTR 40.0%
TTCGGCTTATTTGTTTGACC+CGG - chr4_1:33078955-33078974 Msa0544480:five_prime_UTR 40.0%
ACCCGGATATTTATACCGAT+GGG - chr4_1:33078972-33078991 Msa0544480:five_prime_UTR 40.0%
TCCCATCGGTATAAATATCC+GGG + chr4_1:33078976-33078995 None:intergenic 40.0%
CTCCCATCGGTATAAATATC+CGG + chr4_1:33078977-33078996 None:intergenic 40.0%
ATTTCTGTGCAAGGGATTGA+TGG - chr4_1:33078998-33079017 Msa0544480:five_prime_UTR 40.0%
GTTTCCACATGAAGAAAAGG+AGG - chr4_1:33079027-33079046 Msa0544480:five_prime_UTR 40.0%
AAAGGAGGAGGTTGTTGATA+AGG - chr4_1:33079042-33079061 Msa0544480:five_prime_UTR 40.0%
ATAAGGTTGTGACCCAAGAA+CGG - chr4_1:33079059-33079078 Msa0544480:five_prime_UTR 40.0%
TTGAACTAGGAGTTGAGTGT+GGG + chr4_1:33077222-33077241 None:intergenic 40.0%
ATTGAACTAGGAGTTGAGTG+TGG + chr4_1:33077223-33077242 None:intergenic 40.0%
GGTTGCATTGTGAAAGTCTA+AGG + chr4_1:33077291-33077310 None:intergenic 40.0%
! AGGAGTTTGTTTAGGTGGTA+AGG + chr4_1:33077363-33077382 None:intergenic 40.0%
AAGTGAAGAAGAAGAACGTG+CGG + chr4_1:33077619-33077638 None:intergenic 40.0%
!!! CGTTCTAGAGCTTGGTTTTT+TGG + chr4_1:33077830-33077849 None:intergenic 40.0%
!! TAAGATTTCGTGGCTCTAAG+AGG + chr4_1:33077880-33077899 None:intergenic 40.0%
!! CAGATCCATTGATTCGTGTT+GGG + chr4_1:33077937-33077956 None:intergenic 40.0%
!! ACAGATCCATTGATTCGTGT+TGG + chr4_1:33077938-33077957 None:intergenic 40.0%
AAGCGACAATGTTCTATGTC+GGG + chr4_1:33077981-33078000 None:intergenic 40.0%
CAAGCGACAATGTTCTATGT+CGG + chr4_1:33077982-33078001 None:intergenic 40.0%
TGAAACATCGCAACAATGGT+TGG - chr4_1:33078027-33078046 Msa0544480:CDS 40.0%
! TCGCAACAATGGTTGGTTAA+TGG - chr4_1:33078034-33078053 Msa0544480:CDS 40.0%
!! AGACCTGATGGTGTTATTCA+TGG - chr4_1:33078088-33078107 Msa0544480:CDS 40.0%
AAGTCATCTTGAACAGACCT+TGG + chr4_1:33078133-33078152 None:intergenic 40.0%
AAGATGACTTTAACCGTAGG+AGG - chr4_1:33078143-33078162 Msa0544480:CDS 40.0%
TAGAAACAAGACTCCTCCTA+CGG + chr4_1:33078159-33078178 None:intergenic 40.0%
ATTGCTGCAATTAAACCCGA+AGG - chr4_1:33078178-33078197 Msa0544480:CDS 40.0%
!! TTTTTCAACCGATGAGTCCT+CGG + chr4_1:33078220-33078239 None:intergenic 40.0%
TCAAAAATAGGAAGAGCAGG+CGG + chr4_1:33078271-33078290 None:intergenic 40.0%
GCATCAAAAATAGGAAGAGC+AGG + chr4_1:33078274-33078293 None:intergenic 40.0%
GGAGCCAATGCATCAAAAAT+AGG + chr4_1:33078283-33078302 None:intergenic 40.0%
!!! ATTTTTGATGCATTGGCTCC+TGG - chr4_1:33078283-33078302 Msa0544480:CDS 40.0%
GCTAAAAAGCTTCCATTACC+TGG + chr4_1:33078334-33078353 None:intergenic 40.0%
CATGTCAATTGTGTAGTGTC+TGG - chr4_1:33078488-33078507 Msa0544480:CDS 40.0%
! ACAAATTAGTTTCGAGCACC+CGG + chr4_1:33078517-33078536 None:intergenic 40.0%
!!! CTAACTTGTTTTTCAGGACC+TGG - chr4_1:33078539-33078558 Msa0544480:CDS 40.0%
GATGAGTAGGTTAGTATCAG+AGG - chr4_1:33078685-33078704 Msa0544480:CDS 40.0%
AGCACCAAATGATGAAGCTA+TGG - chr4_1:33078727-33078746 Msa0544480:exon 40.0%
!! ATAATTTGTTCCGGTGAACC+CGG + chr4_1:33078782-33078801 None:intergenic 40.0%
CTCTCTTCAGTTTGATACTC+AGG + chr4_1:33078821-33078840 None:intergenic 40.0%
TGCTGTTAGAAGATTTGGGA+AGG - chr4_1:33078850-33078869 Msa0544480:five_prime_UTR 40.0%
TTAGAAGATTTGGGAAGGTG+AGG - chr4_1:33078855-33078874 Msa0544480:five_prime_UTR 40.0%
TCTTCAGCATCAACCTTATG+AGG + chr4_1:33078899-33078918 None:intergenic 40.0%
TTGATGCTGAAGAAGCTGAT+GGG - chr4_1:33078906-33078925 Msa0544480:five_prime_UTR 40.0%
TTCGGCTTATTTGTTTGACC+CGG - chr4_1:33078955-33078974 Msa0544480:five_prime_UTR 40.0%
ACCCGGATATTTATACCGAT+GGG - chr4_1:33078972-33078991 Msa0544480:five_prime_UTR 40.0%
TCCCATCGGTATAAATATCC+GGG + chr4_1:33078976-33078995 None:intergenic 40.0%
CTCCCATCGGTATAAATATC+CGG + chr4_1:33078977-33078996 None:intergenic 40.0%
ATTTCTGTGCAAGGGATTGA+TGG - chr4_1:33078998-33079017 Msa0544480:five_prime_UTR 40.0%
GTTTCCACATGAAGAAAAGG+AGG - chr4_1:33079027-33079046 Msa0544480:five_prime_UTR 40.0%
AAAGGAGGAGGTTGTTGATA+AGG - chr4_1:33079042-33079061 Msa0544480:five_prime_UTR 40.0%
ATAAGGTTGTGACCCAAGAA+CGG - chr4_1:33079059-33079078 Msa0544480:five_prime_UTR 40.0%
TGAACTAGGAGTTGAGTGTG+GGG + chr4_1:33077221-33077240 None:intergenic 45.0%
ATGATTGAAGGGGAAGAGTG+CGG + chr4_1:33077254-33077273 None:intergenic 45.0%
TGTGAAAGTCTAAGGACACG+TGG + chr4_1:33077283-33077302 None:intergenic 45.0%
GTTTGTTTAGGTGGTAAGGC+TGG + chr4_1:33077359-33077378 None:intergenic 45.0%
CAGACACTAGAAGACACTGT+CGG - chr4_1:33077779-33077798 Msa0544480:intron 45.0%
!! CAAGATCTCGTTCTAGAGCT+TGG + chr4_1:33077838-33077857 None:intergenic 45.0%
GGATCTGTATCCAACAAAGG+CGG - chr4_1:33077950-33077969 Msa0544480:intron 45.0%
GATCTGTATCCAACAAAGGC+GGG - chr4_1:33077951-33077970 Msa0544480:intron 45.0%
! AATTAAACCCGAAGGTGCAC+CGG - chr4_1:33078186-33078205 Msa0544480:CDS 45.0%
! ACGTCTTCCATCAGAAGTGT+CGG + chr4_1:33078362-33078381 None:intergenic 45.0%
! ATGTATTGGTGTCTGGTGTC+AGG + chr4_1:33078422-33078441 None:intergenic 45.0%
ATTGTGTAGTGTCTGGTGTC+CGG - chr4_1:33078495-33078514 Msa0544480:CDS 45.0%
!!! ACTTGTTTTTCAGGACCTGG+TGG - chr4_1:33078542-33078561 Msa0544480:CDS 45.0%
TGGAGGTTATAACGAGATGG+CGG - chr4_1:33078628-33078647 Msa0544480:CDS 45.0%
!! TAACGAGATGGCGGATATTC+TGG - chr4_1:33078637-33078656 Msa0544480:CDS 45.0%
GAACTTAACGTCGTTAGCGA+CGG - chr4_1:33078661-33078680 Msa0544480:CDS 45.0%
GTTGATGCTGAAGAAGCTGA+TGG - chr4_1:33078905-33078924 Msa0544480:five_prime_UTR 45.0%
! GCTGATGGGTCGGTTAAATT+CGG - chr4_1:33078920-33078939 Msa0544480:five_prime_UTR 45.0%
! CTGATGGGTCGGTTAAATTC+GGG - chr4_1:33078921-33078940 Msa0544480:five_prime_UTR 45.0%
GTTAAATTCGGGCATGGTGA+TGG - chr4_1:33078932-33078951 Msa0544480:five_prime_UTR 45.0%
GACCCGGATATTTATACCGA+TGG - chr4_1:33078971-33078990 Msa0544480:five_prime_UTR 45.0%
CGGATATTTATACCGATGGG+AGG - chr4_1:33078975-33078994 Msa0544480:five_prime_UTR 45.0%
TTGCACAGAAATCCTCCCAT+CGG + chr4_1:33078990-33079009 None:intergenic 45.0%
ATGGGAGGATTTCTGTGCAA+GGG - chr4_1:33078990-33079009 Msa0544480:five_prime_UTR 45.0%
TCCACATGAAGAAAAGGAGG+AGG - chr4_1:33079030-33079049 Msa0544480:five_prime_UTR 45.0%
! ACCTCCTCCTTTTCTTCATG+TGG + chr4_1:33079034-33079053 None:intergenic 45.0%
TGAACTAGGAGTTGAGTGTG+GGG + chr4_1:33077221-33077240 None:intergenic 45.0%
ATGATTGAAGGGGAAGAGTG+CGG + chr4_1:33077254-33077273 None:intergenic 45.0%
TGTGAAAGTCTAAGGACACG+TGG + chr4_1:33077283-33077302 None:intergenic 45.0%
GTTTGTTTAGGTGGTAAGGC+TGG + chr4_1:33077359-33077378 None:intergenic 45.0%
CAGACACTAGAAGACACTGT+CGG - chr4_1:33077779-33077798 Msa0544480:intron 45.0%
!! CAAGATCTCGTTCTAGAGCT+TGG + chr4_1:33077838-33077857 None:intergenic 45.0%
GGATCTGTATCCAACAAAGG+CGG - chr4_1:33077950-33077969 Msa0544480:intron 45.0%
GATCTGTATCCAACAAAGGC+GGG - chr4_1:33077951-33077970 Msa0544480:intron 45.0%
! AATTAAACCCGAAGGTGCAC+CGG - chr4_1:33078186-33078205 Msa0544480:CDS 45.0%
! ACGTCTTCCATCAGAAGTGT+CGG + chr4_1:33078362-33078381 None:intergenic 45.0%
! ATGTATTGGTGTCTGGTGTC+AGG + chr4_1:33078422-33078441 None:intergenic 45.0%
ATTGTGTAGTGTCTGGTGTC+CGG - chr4_1:33078495-33078514 Msa0544480:CDS 45.0%
!!! ACTTGTTTTTCAGGACCTGG+TGG - chr4_1:33078542-33078561 Msa0544480:CDS 45.0%
TGGAGGTTATAACGAGATGG+CGG - chr4_1:33078628-33078647 Msa0544480:CDS 45.0%
!! TAACGAGATGGCGGATATTC+TGG - chr4_1:33078637-33078656 Msa0544480:CDS 45.0%
GAACTTAACGTCGTTAGCGA+CGG - chr4_1:33078661-33078680 Msa0544480:CDS 45.0%
GTTGATGCTGAAGAAGCTGA+TGG - chr4_1:33078905-33078924 Msa0544480:five_prime_UTR 45.0%
! GCTGATGGGTCGGTTAAATT+CGG - chr4_1:33078920-33078939 Msa0544480:five_prime_UTR 45.0%
! CTGATGGGTCGGTTAAATTC+GGG - chr4_1:33078921-33078940 Msa0544480:five_prime_UTR 45.0%
GTTAAATTCGGGCATGGTGA+TGG - chr4_1:33078932-33078951 Msa0544480:five_prime_UTR 45.0%
GACCCGGATATTTATACCGA+TGG - chr4_1:33078971-33078990 Msa0544480:five_prime_UTR 45.0%
CGGATATTTATACCGATGGG+AGG - chr4_1:33078975-33078994 Msa0544480:five_prime_UTR 45.0%
TTGCACAGAAATCCTCCCAT+CGG + chr4_1:33078990-33079009 None:intergenic 45.0%
ATGGGAGGATTTCTGTGCAA+GGG - chr4_1:33078990-33079009 Msa0544480:five_prime_UTR 45.0%
TCCACATGAAGAAAAGGAGG+AGG - chr4_1:33079030-33079049 Msa0544480:five_prime_UTR 45.0%
! ACCTCCTCCTTTTCTTCATG+TGG + chr4_1:33079034-33079053 None:intergenic 45.0%
AAGGGCCAGGTAGTAGAAGT+TGG - chr4_1:33077183-33077202 Msa0544480:CDS 50.0%
AGGGCCAGGTAGTAGAAGTT+GGG - chr4_1:33077184-33077203 Msa0544480:CDS 50.0%
CTCTCCCAACTTCTACTACC+TGG + chr4_1:33077191-33077210 None:intergenic 50.0%
GCGGTGTGTGACATTGAACT+AGG + chr4_1:33077235-33077254 None:intergenic 50.0%
AAAGTCTAAGGACACGTGGC+GGG + chr4_1:33077279-33077298 None:intergenic 50.0%
GAAAGTCTAAGGACACGTGG+CGG + chr4_1:33077280-33077299 None:intergenic 50.0%
ACCATAGATGCCGCAATCCA+TGG + chr4_1:33077579-33077598 None:intergenic 50.0%
! AGGTTGATCCGAGGACTCAT+CGG - chr4_1:33078209-33078228 Msa0544480:CDS 50.0%
CTTCTGATGGAAGACGTGTC+TGG - chr4_1:33078365-33078384 Msa0544480:CDS 50.0%
TTGTGTAGTGTCTGGTGTCC+GGG - chr4_1:33078496-33078515 Msa0544480:CDS 50.0%
GGACCCCACCATCATTTCAA+CGG - chr4_1:33078563-33078582 Msa0544480:CDS 50.0%
GACCCCACCATCATTTCAAC+GGG - chr4_1:33078564-33078583 Msa0544480:CDS 50.0%
ACCCCACCATCATTTCAACG+GGG - chr4_1:33078565-33078584 Msa0544480:CDS 50.0%
! TCCCCGTTGAAATGATGGTG+GGG + chr4_1:33078569-33078588 None:intergenic 50.0%
CTCCCCGTTGAAATGATGGT+GGG + chr4_1:33078570-33078589 None:intergenic 50.0%
AACGGACCAGTTGAGTGAAC+CGG - chr4_1:33078760-33078779 Msa0544480:five_prime_UTR 50.0%
! TGCTGAAGAAGCTGATGGGT+CGG - chr4_1:33078910-33078929 Msa0544480:five_prime_UTR 50.0%
!! ATTCGGGCATGGTGATGGTT+CGG - chr4_1:33078937-33078956 Msa0544480:five_prime_UTR 50.0%
GATGGGAGGATTTCTGTGCA+AGG - chr4_1:33078989-33079008 Msa0544480:five_prime_UTR 50.0%
GTTGTGACCCAAGAACGGAA+GGG - chr4_1:33079064-33079083 Msa0544480:five_prime_UTR 50.0%
GGGTTTACCCTTCCGTTCTT+GGG + chr4_1:33079074-33079093 None:intergenic 50.0%
TTGCTTGGCCACAACCTTAG+CGG + chr4_1:33079095-33079114 None:intergenic 50.0%
GTTGTGGCCAAGCAAAGAAG+AGG - chr4_1:33079100-33079119 Msa0544480:five_prime_UTR 50.0%
CAACGCACCTCTTCTTTGCT+TGG + chr4_1:33079110-33079129 None:intergenic 50.0%
AAGGGCCAGGTAGTAGAAGT+TGG - chr4_1:33077183-33077202 Msa0544480:CDS 50.0%
AGGGCCAGGTAGTAGAAGTT+GGG - chr4_1:33077184-33077203 Msa0544480:CDS 50.0%
CTCTCCCAACTTCTACTACC+TGG + chr4_1:33077191-33077210 None:intergenic 50.0%
GCGGTGTGTGACATTGAACT+AGG + chr4_1:33077235-33077254 None:intergenic 50.0%
AAAGTCTAAGGACACGTGGC+GGG + chr4_1:33077279-33077298 None:intergenic 50.0%
GAAAGTCTAAGGACACGTGG+CGG + chr4_1:33077280-33077299 None:intergenic 50.0%
ACCATAGATGCCGCAATCCA+TGG + chr4_1:33077579-33077598 None:intergenic 50.0%
! AGGTTGATCCGAGGACTCAT+CGG - chr4_1:33078209-33078228 Msa0544480:CDS 50.0%
CTTCTGATGGAAGACGTGTC+TGG - chr4_1:33078365-33078384 Msa0544480:CDS 50.0%
TTGTGTAGTGTCTGGTGTCC+GGG - chr4_1:33078496-33078515 Msa0544480:CDS 50.0%
GGACCCCACCATCATTTCAA+CGG - chr4_1:33078563-33078582 Msa0544480:CDS 50.0%
GACCCCACCATCATTTCAAC+GGG - chr4_1:33078564-33078583 Msa0544480:CDS 50.0%
ACCCCACCATCATTTCAACG+GGG - chr4_1:33078565-33078584 Msa0544480:CDS 50.0%
! TCCCCGTTGAAATGATGGTG+GGG + chr4_1:33078569-33078588 None:intergenic 50.0%
CTCCCCGTTGAAATGATGGT+GGG + chr4_1:33078570-33078589 None:intergenic 50.0%
AACGGACCAGTTGAGTGAAC+CGG - chr4_1:33078760-33078779 Msa0544480:five_prime_UTR 50.0%
! TGCTGAAGAAGCTGATGGGT+CGG - chr4_1:33078910-33078929 Msa0544480:five_prime_UTR 50.0%
!! ATTCGGGCATGGTGATGGTT+CGG - chr4_1:33078937-33078956 Msa0544480:five_prime_UTR 50.0%
GATGGGAGGATTTCTGTGCA+AGG - chr4_1:33078989-33079008 Msa0544480:five_prime_UTR 50.0%
GTTGTGACCCAAGAACGGAA+GGG - chr4_1:33079064-33079083 Msa0544480:five_prime_UTR 50.0%
GGGTTTACCCTTCCGTTCTT+GGG + chr4_1:33079074-33079093 None:intergenic 50.0%
TTGCTTGGCCACAACCTTAG+CGG + chr4_1:33079095-33079114 None:intergenic 50.0%
GTTGTGGCCAAGCAAAGAAG+AGG - chr4_1:33079100-33079119 Msa0544480:five_prime_UTR 50.0%
CAACGCACCTCTTCTTTGCT+TGG + chr4_1:33079110-33079129 None:intergenic 50.0%
! GTGGCGGGGTATGATTGAAG+GGG + chr4_1:33077264-33077283 None:intergenic 55.0%
! CGTGGCGGGGTATGATTGAA+GGG + chr4_1:33077265-33077284 None:intergenic 55.0%
! ACGTGGCGGGGTATGATTGA+AGG + chr4_1:33077266-33077285 None:intergenic 55.0%
AAGTCTAAGGACACGTGGCG+GGG + chr4_1:33077278-33077297 None:intergenic 55.0%
! GCCATGGATTGCGGCATCTA+TGG - chr4_1:33077575-33077594 Msa0544480:CDS 55.0%
ATCAACCTCCGGTGCACCTT+CGG + chr4_1:33078197-33078216 None:intergenic 55.0%
TGAGTCCTCGGATCAACCTC+CGG + chr4_1:33078208-33078227 None:intergenic 55.0%
! ATTGGCTCCTGGACCTTCTC+TGG - chr4_1:33078294-33078313 Msa0544480:CDS 55.0%
AAGCTTCCATTACCTGGCGC+TGG + chr4_1:33078328-33078347 None:intergenic 55.0%
! GCACTGACCGACACTTCTGA+TGG - chr4_1:33078352-33078371 Msa0544480:CDS 55.0%
TGGAAGACGTGTCTGGTGTC+TGG - chr4_1:33078372-33078391 Msa0544480:CDS 55.0%
!! AAATGATGGTGGGGTCCACC+AGG + chr4_1:33078560-33078579 None:intergenic 55.0%
CCTCCCCGTTGAAATGATGG+TGG + chr4_1:33078571-33078590 None:intergenic 55.0%
CCACCATCATTTCAACGGGG+AGG - chr4_1:33078568-33078587 Msa0544480:CDS 55.0%
GTGCCTCCCCGTTGAAATGA+TGG + chr4_1:33078574-33078593 None:intergenic 55.0%
! TCATTTCAACGGGGAGGCAC+AGG - chr4_1:33078574-33078593 Msa0544480:CDS 55.0%
CGTTAGCGACGGAGATGAGT+AGG - chr4_1:33078672-33078691 Msa0544480:CDS 55.0%
ACGGACCAGTTGAGTGAACC+GGG - chr4_1:33078761-33078780 Msa0544480:five_prime_UTR 55.0%
GTGAACCCGGTTCACTCAAC+TGG + chr4_1:33078769-33078788 None:intergenic 55.0%
GTTGAGTGAACCGGGTTCAC+CGG - chr4_1:33078769-33078788 Msa0544480:five_prime_UTR 55.0%
GGGTCGGTTAAATTCGGGCA+TGG - chr4_1:33078926-33078945 Msa0544480:five_prime_UTR 55.0%
GGTTGTGACCCAAGAACGGA+AGG - chr4_1:33079063-33079082 Msa0544480:five_prime_UTR 55.0%
CGGGTTTACCCTTCCGTTCT+TGG + chr4_1:33079075-33079094 None:intergenic 55.0%
ACGGAAGGGTAAACCCGCTA+AGG - chr4_1:33079078-33079097 Msa0544480:five_prime_UTR 55.0%
GGGTAAACCCGCTAAGGTTG+TGG - chr4_1:33079084-33079103 Msa0544480:five_prime_UTR 55.0%
TGCTTGGCCACAACCTTAGC+GGG + chr4_1:33079094-33079113 None:intergenic 55.0%
! GTGGCGGGGTATGATTGAAG+GGG + chr4_1:33077264-33077283 None:intergenic 55.0%
! CGTGGCGGGGTATGATTGAA+GGG + chr4_1:33077265-33077284 None:intergenic 55.0%
! ACGTGGCGGGGTATGATTGA+AGG + chr4_1:33077266-33077285 None:intergenic 55.0%
AAGTCTAAGGACACGTGGCG+GGG + chr4_1:33077278-33077297 None:intergenic 55.0%
! GCCATGGATTGCGGCATCTA+TGG - chr4_1:33077575-33077594 Msa0544480:CDS 55.0%
ATCAACCTCCGGTGCACCTT+CGG + chr4_1:33078197-33078216 None:intergenic 55.0%
TGAGTCCTCGGATCAACCTC+CGG + chr4_1:33078208-33078227 None:intergenic 55.0%
! ATTGGCTCCTGGACCTTCTC+TGG - chr4_1:33078294-33078313 Msa0544480:CDS 55.0%
AAGCTTCCATTACCTGGCGC+TGG + chr4_1:33078328-33078347 None:intergenic 55.0%
! GCACTGACCGACACTTCTGA+TGG - chr4_1:33078352-33078371 Msa0544480:CDS 55.0%
TGGAAGACGTGTCTGGTGTC+TGG - chr4_1:33078372-33078391 Msa0544480:CDS 55.0%
!! AAATGATGGTGGGGTCCACC+AGG + chr4_1:33078560-33078579 None:intergenic 55.0%
CCTCCCCGTTGAAATGATGG+TGG + chr4_1:33078571-33078590 None:intergenic 55.0%
CCACCATCATTTCAACGGGG+AGG - chr4_1:33078568-33078587 Msa0544480:CDS 55.0%
GTGCCTCCCCGTTGAAATGA+TGG + chr4_1:33078574-33078593 None:intergenic 55.0%
! TCATTTCAACGGGGAGGCAC+AGG - chr4_1:33078574-33078593 Msa0544480:CDS 55.0%
CGTTAGCGACGGAGATGAGT+AGG - chr4_1:33078672-33078691 Msa0544480:CDS 55.0%
ACGGACCAGTTGAGTGAACC+GGG - chr4_1:33078761-33078780 Msa0544480:five_prime_UTR 55.0%
GTGAACCCGGTTCACTCAAC+TGG + chr4_1:33078769-33078788 None:intergenic 55.0%
GTTGAGTGAACCGGGTTCAC+CGG - chr4_1:33078769-33078788 Msa0544480:five_prime_UTR 55.0%
GGGTCGGTTAAATTCGGGCA+TGG - chr4_1:33078926-33078945 Msa0544480:five_prime_UTR 55.0%
GGTTGTGACCCAAGAACGGA+AGG - chr4_1:33079063-33079082 Msa0544480:five_prime_UTR 55.0%
CGGGTTTACCCTTCCGTTCT+TGG + chr4_1:33079075-33079094 None:intergenic 55.0%
ACGGAAGGGTAAACCCGCTA+AGG - chr4_1:33079078-33079097 Msa0544480:five_prime_UTR 55.0%
GGGTAAACCCGCTAAGGTTG+TGG - chr4_1:33079084-33079103 Msa0544480:five_prime_UTR 55.0%
TGCTTGGCCACAACCTTAGC+GGG + chr4_1:33079094-33079113 None:intergenic 55.0%
! TAAACCCGAAGGTGCACCGG+AGG - chr4_1:33078189-33078208 Msa0544480:CDS 60.0%
TCAACCTCCGGTGCACCTTC+GGG + chr4_1:33078196-33078215 None:intergenic 60.0%
TCCTGGACCTTCTCTGGCAC+CGG - chr4_1:33078300-33078319 Msa0544480:CDS 60.0%
! TAAACCCGAAGGTGCACCGG+AGG - chr4_1:33078189-33078208 Msa0544480:CDS 60.0%
TCAACCTCCGGTGCACCTTC+GGG + chr4_1:33078196-33078215 None:intergenic 60.0%
TCCTGGACCTTCTCTGGCAC+CGG - chr4_1:33078300-33078319 Msa0544480:CDS 60.0%
TCGGGTCGACCCGCCTTTGT+TGG + chr4_1:33077963-33077982 None:intergenic 65.0%
! GTGCACCGGAGGTTGATCCG+AGG - chr4_1:33078200-33078219 Msa0544480:CDS 65.0%
! CAACGGGGAGGCACAGGTGA+AGG - chr4_1:33078580-33078599 Msa0544480:CDS 65.0%
TCGGGTCGACCCGCCTTTGT+TGG + chr4_1:33077963-33077982 None:intergenic 65.0%
! GTGCACCGGAGGTTGATCCG+AGG - chr4_1:33078200-33078219 Msa0544480:CDS 65.0%
! CAACGGGGAGGCACAGGTGA+AGG - chr4_1:33078580-33078599 Msa0544480:CDS 65.0%
GAGCCAGGCTTCTGCGGTGG+CGG + chr4_1:33078247-33078266 None:intergenic 70.0%
GGAGAGCCAGGCTTCTGCGG+TGG + chr4_1:33078250-33078269 None:intergenic 70.0%
GGCGGAGAGCCAGGCTTCTG+CGG + chr4_1:33078253-33078272 None:intergenic 70.0%
GGAAGAGCAGGCGGAGAGCC+AGG + chr4_1:33078262-33078281 None:intergenic 70.0%
! GCCGGTGCCAGAGAAGGTCC+AGG + chr4_1:33078304-33078323 None:intergenic 70.0%
!! CCATTACCTGGCGCTGGCGC+CGG + chr4_1:33078322-33078341 None:intergenic 70.0%
GAGCCAGGCTTCTGCGGTGG+CGG + chr4_1:33078247-33078266 None:intergenic 70.0%
GGAGAGCCAGGCTTCTGCGG+TGG + chr4_1:33078250-33078269 None:intergenic 70.0%
GGCGGAGAGCCAGGCTTCTG+CGG + chr4_1:33078253-33078272 None:intergenic 70.0%
GGAAGAGCAGGCGGAGAGCC+AGG + chr4_1:33078262-33078281 None:intergenic 70.0%
! GCCGGTGCCAGAGAAGGTCC+AGG + chr4_1:33078304-33078323 None:intergenic 70.0%
!! CCATTACCTGGCGCTGGCGC+CGG + chr4_1:33078322-33078341 None:intergenic 70.0%
! CCAGGCTTCTGCGGTGGCGG+TGG + chr4_1:33078244-33078263 None:intergenic 75.0%
CCACCGCCACCGCAGAAGCC+TGG - chr4_1:33078241-33078260 Msa0544480:CDS 75.0%
!! GCTGGCGCCGGTGCCAGAGA+AGG + chr4_1:33078310-33078329 None:intergenic 75.0%
CCGGCGCCAGCGCCAGGTAA+TGG - chr4_1:33078319-33078338 Msa0544480:CDS 75.0%
! CCAGGCTTCTGCGGTGGCGG+TGG + chr4_1:33078244-33078263 None:intergenic 75.0%
CCACCGCCACCGCAGAAGCC+TGG - chr4_1:33078241-33078260 Msa0544480:CDS 75.0%
!! GCTGGCGCCGGTGCCAGAGA+AGG + chr4_1:33078310-33078329 None:intergenic 75.0%
CCGGCGCCAGCGCCAGGTAA+TGG - chr4_1:33078319-33078338 Msa0544480:CDS 75.0%
!!! CTGGCACCGGCGCCAGCGCC+AGG - chr4_1:33078313-33078332 Msa0544480:CDS 85.0%
!!! CTGGCACCGGCGCCAGCGCC+AGG - chr4_1:33078313-33078332 Msa0544480:CDS 85.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 33077182 33079135 33077182 ID=Msa0544480;Name=Msa0544480
chr4_1 mRNA 33077182 33079135 33077182 ID=Msa0544480-mRNA-1;Parent=Msa0544480;Name=Msa0544480-mRNA-1;_AED=0.14;_eAED=0.14;_QI=390|1|0.5|1|1|1|2|0|447
chr4_1 exon 33077182 33077762 33077182 ID=Msa0544480-mRNA-1:exon:8475;Parent=Msa0544480-mRNA-1
chr4_1 exon 33077983 33079135 33077983 ID=Msa0544480-mRNA-1:exon:8474;Parent=Msa0544480-mRNA-1
chr4_1 five_prime_UTR 33078746 33079135 33078746 ID=Msa0544480-mRNA-1:five_prime_utr;Parent=Msa0544480-mRNA-1
chr4_1 CDS 33077983 33078745 33077983 ID=Msa0544480-mRNA-1:cds;Parent=Msa0544480-mRNA-1
chr4_1 CDS 33077182 33077762 33077182 ID=Msa0544480-mRNA-1:cds;Parent=Msa0544480-mRNA-1
Gene Sequence

>Msa0544480

ATGGCCATGGATTGCGGCATCTATGGTTTCATCAACATTAAACACCGCACGTTCTTCTTCTTCACTTTCTTCTTTCTTGTTCTATCTTTTTCATCATCTTCATCTTCTTCTTCAACGGTTCAAATAAACTCAAACTCAATCTTAGTAGCTTTACTAGACTCACATTACACAGAACTAGCTGAACTCGTTGAAAAAGCTATGCTTCTTCAGACACTAGAAGACACTGTCGGTAAAAACAACATCACAATCTTCGCACCAAAAAACCAAGCTCTAGAACGAGATCTTGACCCAAATTTCAAAACTTTCCTCTTAGAGCCACGAAATCTTAAATCTCTTCAAACTTTGTTAATGTCACATATTATCCCAACACGAATCAATGGATCTGTATCCAACAAAGGCGGGTCGACCCGACATAGAACATTGTCGCTTGAGCATCAGTTATTGATACAGGCAAATGAAACATCGCAACAATGGTTGGTTAATGGTGCTAAGATTGTTCATTTGAATGATGTTACAAGACCTGATGGTGTTATTCATGGAATTGAAAGGCTTCTTATTCCAAGGTCTGTTCAAGATGACTTTAACCGTAGGAGGAGTCTTGTTTCTATTGCTGCAATTAAACCCGAAGGTGCACCGGAGGTTGATCCGAGGACTCATCGGTTGAAAAAGCCACCGCCACCGCAGAAGCCTGGCTCTCCGCCTGCTCTTCCTATTTTTGATGCATTGGCTCCTGGACCTTCTCTGGCACCGGCGCCAGCGCCAGGACCTGGTGGACCCCACCATCATTTCAACGGGGAGGCACAGGTGAAGGATTTTATTCAAACACTGATACATTATGGAGGTTATAACGAGATGGCGGATATTCTGGTGAACTTAACGTCGTTAGCGACGGAGATGAGTAGGTTAGTATCAGAGGGTTATGTTTTAACAGTTCTAGCACCAAATGATGAAGCTATGGCTAAGTTAACAACGGACCAGTTGAGTGAACCGGGTTCACCGGAACAAATTATGTACTATCATTTGATTCCTGAGTATCAAACTGAAGAGAGTATGTATAATGCTGTTAGAAGATTTGGGAAGGTGAGGTATGATACTTTGAGATTGCCTCATAAGGTTGATGCTGAAGAAGCTGATGGGTCGGTTAAATTCGGGCATGGTGATGGTTCGGCTTATTTGTTTGACCCGGATATTTATACCGATGGGAGGATTTCTGTGCAAGGGATTGATGGAGTTTTGTTTCCACATGAAGAAAAGGAGGAGGTTGTTGATAAGGTTGTGACCCAAGAACGGAAGGGTAAACCCGCTAAGGTTGTGGCCAAGCAAAGAAGAGGTGCGTTGCTTTGA
Protein sequence

>Msa0544480

MAMDCGIYGFINIKHRTFFFFTFFFLVLSFSSSSSSSSTVQINSNSILVALLDSHYTELAELVEKAMLLQTLEDTVGKNNITIFAPKNQALERDLDPNFKTFLLEPRNLKSLQTLLMSHIIPTRINGSVSNKGGSTRHRTLSLEHQLLIQANETSQQWLVNGAKIVHLNDVTRPDGVIHGIERLLIPRSVQDDFNRRRSLVSIAAIKPEGAPEVDPRTHRLKKPPPPQKPGSPPALPIFDALAPGPSLAPAPAPGPGGPHHHFNGEAQVKDFIQTLIHYGGYNEMADILVNLTSLATEMSRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGSPEQIMYYHLIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVDAEEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPHEEKEEVVDKVVTQERKGKPAKVVAKQRRGALL*