Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277390 | sp|Q84WU0|OFUT5_ARATH | 60.424 | 566 | 193 | 8 | 3 | 542 | 4 | 564 | 0.0 | 688 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277390 | G7L9X3 | 99.077 | 542 | 5 | 0 | 1 | 542 | 1 | 542 | 0.0 | 1117 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0826120 | Msa1277390 | 0.813073 | 3.078817e-51 | -8.615850e-47 |
| Msa0176900 | Msa1277390 | 0.814637 | 1.392307e-51 | -8.615850e-47 |
| Msa1031390 | Msa1277390 | 0.800814 | 1.207742e-48 | -8.615850e-47 |
| Msa1175430 | Msa1277390 | 0.816701 | 4.828048e-52 | -8.615850e-47 |
| Msa0544480 | Msa1277390 | 0.800462 | 1.425261e-48 | -8.615850e-47 |
| Msa0860620 | Msa1277390 | 0.805259 | 1.455300e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277390 | MtrunA17_Chr8g0345431 | 99.077 | 542 | 5 | 0 | 1 | 542 | 1 | 542 | 0.0 | 1117 |
| Msa1277390 | MtrunA17_Chr2g0277611 | 80.952 | 105 | 16 | 2 | 261 | 364 | 3 | 104 | 1.54e-47 | 160 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277390 | AT1G17270.2 | 60.424 | 566 | 193 | 8 | 3 | 542 | 4 | 564 | 0.0 | 688 |
| Msa1277390 | AT1G17270.1 | 60.424 | 566 | 193 | 8 | 3 | 542 | 4 | 564 | 0.0 | 688 |
| Msa1277390 | AT5G50420.1 | 60.457 | 569 | 190 | 9 | 3 | 542 | 4 | 566 | 0.0 | 672 |
| Msa1277390 | AT1G53770.1 | 59.253 | 562 | 188 | 10 | 6 | 542 | 18 | 563 | 0.0 | 660 |
| Msa1277390 | AT1G53770.2 | 55.333 | 600 | 189 | 11 | 6 | 542 | 18 | 601 | 0.0 | 638 |
Find 160 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCATATTAATAAATGTTT+AGG | 0.213341 | 8_3:-12619467 | Msa1277390:CDS |
| TTAGTTGCTATTTGTGTTTC+CGG | 0.216242 | 8_3:-12619611 | Msa1277390:CDS |
| TTTGCCTCAACCTTGTTATT+TGG | 0.238205 | 8_3:-12619360 | Msa1277390:CDS |
| GAATGTAGAGGGAGGTGTTC+GGG | 0.272733 | 8_3:+12620132 | None:intergenic |
| ATTGATCCTGAATTCAATTT+CGG | 0.284521 | 8_3:-12619737 | Msa1277390:CDS |
| GGCGATTCTGAACAGGGTTT+TGG | 0.289374 | 8_3:-12619540 | Msa1277390:CDS |
| ATCATATTAATAAATGTTTA+GGG | 0.291964 | 8_3:-12619466 | Msa1277390:CDS |
| TATTGAATGGAATCCTAAAA+AGG | 0.306443 | 8_3:-12619642 | Msa1277390:CDS |
| GAATTTCCGAAATTGAATTC+AGG | 0.320671 | 8_3:+12619731 | None:intergenic |
| TTGTGGAGGGTTGGTGGATG+AGG | 0.325976 | 8_3:+12620158 | None:intergenic |
| TCTTCAATTAGCTTAGGGTT+AGG | 0.344093 | 8_3:+12619845 | None:intergenic |
| TGAGTAAACCTAAGGCTGTT+TGG | 0.347034 | 8_3:-12619295 | Msa1277390:CDS |
| GAGGTAAATGGCGCGTAATT+CGG | 0.350363 | 8_3:+12619928 | None:intergenic |
| AATATGAAAGTGAGTGAGTT+TGG | 0.364604 | 8_3:+12620266 | None:intergenic |
| GTGAAGTAGCGGCGGAGATT+GGG | 0.366938 | 8_3:+12619995 | None:intergenic |
| GAGTAAACCTAAGGCTGTTT+GGG | 0.367851 | 8_3:-12619294 | Msa1277390:CDS |
| GAAAACTGTTCAGGATGTTA+TGG | 0.370308 | 8_3:-12619243 | Msa1277390:CDS |
| CTTCAATTAGCTTAGGGTTA+GGG | 0.381882 | 8_3:+12619846 | None:intergenic |
| GGTGAAGTAGCGGCGGAGAT+TGG | 0.381999 | 8_3:+12619994 | None:intergenic |
| GGAAGAGAAGGAGGAGGAGA+AGG | 0.389816 | 8_3:+12620032 | None:intergenic |
| GCTGAGCAGTAAGCAAAATA+AGG | 0.389924 | 8_3:+12619090 | None:intergenic |
| TTCTTATGATGATGATGTTA+TGG | 0.392013 | 8_3:-12619213 | Msa1277390:CDS |
| TTGAAGAAGTTGGATGGGTT+GGG | 0.392285 | 8_3:-12619326 | Msa1277390:CDS |
| CGATTTATTCAGACATTCCT+TGG | 0.392434 | 8_3:-12619068 | Msa1277390:CDS |
| GAAATTCAAATTTCAATGTT+GGG | 0.393322 | 8_3:-12619715 | Msa1277390:CDS |
| TCATCCTCCCAAACAGCCTT+AGG | 0.396707 | 8_3:+12619287 | None:intergenic |
| AAGATCTCAATTCCCGATTC+CGG | 0.397943 | 8_3:-12620102 | Msa1277390:CDS |
| TCCAAAGAAGAAAACTGTTC+AGG | 0.400163 | 8_3:-12619252 | Msa1277390:CDS |
| TTCAGATCTTCAATTAGCTT+AGG | 0.405765 | 8_3:+12619839 | None:intergenic |
| GGAAATTCAAATTTCAATGT+TGG | 0.407138 | 8_3:-12619716 | Msa1277390:CDS |
| TGCCACAACTGTTATTGATA+AGG | 0.407800 | 8_3:+12616551 | None:intergenic |
| AGTCTGTTCCACTTGTAATT+CGG | 0.409574 | 8_3:-12618347 | Msa1277390:CDS |
| CGAAACACAGGTTCAACAAA+TGG | 0.412350 | 8_3:+12620421 | None:intergenic |
| GGAATGTAGAGGGAGGTGTT+CGG | 0.421929 | 8_3:+12620131 | None:intergenic |
| GTTGAAGAAGTTGGATGGGT+TGG | 0.422746 | 8_3:-12619327 | Msa1277390:CDS |
| TTCTTTCATTCGATCGGAGA+TGG | 0.424663 | 8_3:+12619952 | None:intergenic |
| TGATGAGAGGTTGAAGAAGT+TGG | 0.429311 | 8_3:-12619336 | Msa1277390:CDS |
| CTGTTGAATCCACATAGAAC+AGG | 0.430746 | 8_3:-12619767 | Msa1277390:CDS |
| TCAGATCTTCAATTAGCTTA+GGG | 0.433199 | 8_3:+12619840 | None:intergenic |
| AGGGTTGGTGGATGAGGTTG+TGG | 0.433360 | 8_3:+12620164 | None:intergenic |
| TGATAATCAACTTTAGAACT+TGG | 0.433498 | 8_3:+12619512 | None:intergenic |
| TTGTTGGCGCAAGAGGTAAA+TGG | 0.433822 | 8_3:+12619916 | None:intergenic |
| TGAAATTGACGCGCCGGAAT+CGG | 0.434406 | 8_3:+12620089 | None:intergenic |
| AAGGAGGAGGAGAAGGAGAA+TGG | 0.435348 | 8_3:+12620039 | None:intergenic |
| AATGGGATGCTTTGTTGTAC+AGG | 0.436207 | 8_3:-12618302 | Msa1277390:CDS |
| TTGAGAGACGTTGTTGTTGT+TGG | 0.437985 | 8_3:+12619900 | None:intergenic |
| CAATCTGCTGCTTGAGGGAT+GGG | 0.440779 | 8_3:+12618477 | None:intergenic |
| GAAATTGACGCGCCGGAATC+GGG | 0.444155 | 8_3:+12620090 | None:intergenic |
| GAGTGAGTGAGGGAGTGATT+TGG | 0.457122 | 8_3:+12620317 | None:intergenic |
| GATGCAGCTGAAAGTGAAAC+TGG | 0.457579 | 8_3:-12618402 | Msa1277390:CDS |
| TGGTAGGGCGGTCAAGTGTC+TGG | 0.459906 | 8_3:+12616780 | None:intergenic |
| ACAACTGTTATTGATAAGGT+TGG | 0.460195 | 8_3:+12616555 | None:intergenic |
| ACTGTTATGTCACAAAATTC+AGG | 0.460432 | 8_3:+12616619 | None:intergenic |
| ATCCGTAGAAAGATATATGA+TGG | 0.464180 | 8_3:+12618422 | None:intergenic |
| TTGTACAGGCATCATATTGA+GGG | 0.469353 | 8_3:-12618288 | Msa1277390:CDS |
| TTCGGATTCTTTCATTCGAT+CGG | 0.469561 | 8_3:+12619946 | None:intergenic |
| AGTGAGTTTGGTGAATCGTT+AGG | 0.474226 | 8_3:+12620278 | None:intergenic |
| AGAAGAGGAAGAGAAGGAGG+AGG | 0.475110 | 8_3:+12620026 | None:intergenic |
| GCATGAATGGGTTATGCAAC+CGG | 0.476154 | 8_3:-12619159 | Msa1277390:CDS |
| CTTGCGGCTGAGAAAGGACT+GGG | 0.485227 | 8_3:-12616916 | Msa1277390:CDS |
| ATGCTGAAGTGGAGCATGAA+TGG | 0.486444 | 8_3:-12619172 | Msa1277390:CDS |
| CTGAGAAGAAGAGGAAGAGA+AGG | 0.490020 | 8_3:+12620020 | None:intergenic |
| GAGGAGGAATCCATTGGTAT+AGG | 0.490868 | 8_3:+12620205 | None:intergenic |
| AGAAGAAGAGGAAGAGAAGG+AGG | 0.491803 | 8_3:+12620023 | None:intergenic |
| CAAGATGTCTTCAGTGAAAG+TGG | 0.493024 | 8_3:+12616935 | None:intergenic |
| ACTGAAGGTGGAAGCTATGT+TGG | 0.493826 | 8_3:-12617006 | Msa1277390:intron |
| CACTTGTAATTCGGCCAGCT+CGG | 0.495746 | 8_3:-12618338 | Msa1277390:CDS |
| CAAAGAGGAAAACTATTGAA+TGG | 0.498658 | 8_3:-12619655 | Msa1277390:CDS |
| GTCTTGCATTGATGAGCAAT+CGG | 0.499882 | 8_3:+12619131 | None:intergenic |
| AGCGTGTTCATTGGAGCACC+TGG | 0.501788 | 8_3:-12616960 | Msa1277390:CDS |
| AGTAAGCAAAATAAGGCGAT+TGG | 0.502278 | 8_3:+12619097 | None:intergenic |
| AGACATCTTGCGGCTGAGAA+AGG | 0.504340 | 8_3:-12616922 | Msa1277390:CDS |
| ATTACATTCCCTGTTCTATG+TGG | 0.511766 | 8_3:+12619758 | None:intergenic |
| CAGTCACTGATTGTGCTGAA+TGG | 0.512195 | 8_3:-12618372 | Msa1277390:CDS |
| TGCTGAAGTGGAGCATGAAT+GGG | 0.512626 | 8_3:-12619171 | Msa1277390:CDS |
| GTAAGCAAAATAAGGCGATT+GGG | 0.515776 | 8_3:+12619098 | None:intergenic |
| GTTGTTGTTGTTGGCGCAAG+AGG | 0.519086 | 8_3:+12619909 | None:intergenic |
| CATTCGATCGGAGATGGAGT+CGG | 0.521245 | 8_3:+12619958 | None:intergenic |
| TTGATCAGAGTTTGTCAAAG+AGG | 0.522693 | 8_3:-12619670 | Msa1277390:CDS |
| AATACAATCAAACCTATGGT+AGG | 0.524008 | 8_3:+12616764 | None:intergenic |
| CAAATGATTCGACATTTGAC+CGG | 0.524066 | 8_3:+12619592 | None:intergenic |
| TTATTCAGACATTCCTTGGA+AGG | 0.535294 | 8_3:-12619064 | Msa1277390:CDS |
| AAGATGCAATCTGCTGCTTG+AGG | 0.535947 | 8_3:+12618471 | None:intergenic |
| GCAATCTGCTGCTTGAGGGA+TGG | 0.535959 | 8_3:+12618476 | None:intergenic |
| AGATGCAATCTGCTGCTTGA+GGG | 0.537297 | 8_3:+12618472 | None:intergenic |
| TTTCGCGGCGATTCTGAACA+GGG | 0.537645 | 8_3:-12619546 | Msa1277390:CDS |
| AGCAGCAGATTGCATCTTGA+GGG | 0.538084 | 8_3:-12618466 | Msa1277390:CDS |
| GTGGTGGTCGTCGTCTTCGT+CGG | 0.541192 | 8_3:+12620183 | None:intergenic |
| GTCGTCGTCTTCGTCGGAGG+AGG | 0.543349 | 8_3:+12620189 | None:intergenic |
| TCATATTGAGGGAGATTCAC+AGG | 0.543571 | 8_3:-12618277 | Msa1277390:intron |
| CAATATTCGGTTCTTCACCT+TGG | 0.544512 | 8_3:+12616862 | None:intergenic |
| ACACTTGACCGCCCTACCAT+AGG | 0.544602 | 8_3:-12616776 | Msa1277390:three_prime_UTR |
| GTGAGTTTGGTGAATCGTTA+GGG | 0.544769 | 8_3:+12620279 | None:intergenic |
| GGCTCACTCACCTATACCAA+TGG | 0.546255 | 8_3:-12620215 | Msa1277390:exon |
| GTTGTACAGGCATCATATTG+AGG | 0.546833 | 8_3:-12618289 | Msa1277390:CDS |
| TAAGGCTGTTTGGGAGGATG+AGG | 0.546866 | 8_3:-12619285 | Msa1277390:CDS |
| CTCTCATCATCCAAATAACA+AGG | 0.547604 | 8_3:+12619350 | None:intergenic |
| ACCCATCATATATCTTTCTA+CGG | 0.548743 | 8_3:-12618424 | Msa1277390:CDS |
| GATGGAGTCGGAGGTGAATG+AGG | 0.551470 | 8_3:+12619970 | None:intergenic |
| AATCGTTAGGGTGACTCGGT+TGG | 0.551583 | 8_3:+12620291 | None:intergenic |
| GATGATGATGTTATGGCGAT+TGG | 0.552086 | 8_3:-12619206 | Msa1277390:CDS |
| TCTTGCGGCTGAGAAAGGAC+TGG | 0.552823 | 8_3:-12616917 | Msa1277390:CDS |
| GGTGAATCGTTAGGGTGACT+CGG | 0.555908 | 8_3:+12620287 | None:intergenic |
| TTTGCATATGAGTAAACCTA+AGG | 0.562855 | 8_3:-12619303 | Msa1277390:CDS |
| AGAGGTTGAAGAAGTTGGAT+GGG | 0.564955 | 8_3:-12619331 | Msa1277390:CDS |
| TGATGAGCAATCGGTCCACC+CGG | 0.566103 | 8_3:+12619140 | None:intergenic |
| CATGAATGGGTTATGCAACC+GGG | 0.566495 | 8_3:-12619158 | Msa1277390:CDS |
| CTGATCGGAAGAGTTGAAAA+CGG | 0.566837 | 8_3:+12619877 | None:intergenic |
| GCCATGTCTAGCGTGTTCAT+TGG | 0.568070 | 8_3:-12616969 | Msa1277390:CDS |
| AAGCAATGAAGTTCCTTCCA+AGG | 0.569377 | 8_3:+12619051 | None:intergenic |
| TCGGTTGGAGAGAGTGAGTG+AGG | 0.569623 | 8_3:+12620306 | None:intergenic |
| GAGAGGTTGAAGAAGTTGGA+TGG | 0.570927 | 8_3:-12619332 | Msa1277390:CDS |
| GCATCTTGAGGGTGATTGAG+AGG | 0.572158 | 8_3:-12618455 | Msa1277390:CDS |
| AATGTAGAGGGAGGTGTTCG+GGG | 0.572856 | 8_3:+12620133 | None:intergenic |
| AACCTTATCAATAACAGTTG+TGG | 0.572975 | 8_3:-12616553 | Msa1277390:three_prime_UTR |
| AAGATATATGATGGGTGCAT+CGG | 0.573461 | 8_3:+12618431 | None:intergenic |
| GATTGGGGACTGAGAAGAAG+AGG | 0.575965 | 8_3:+12620011 | None:intergenic |
| TGAAGTAGCGGCGGAGATTG+GGG | 0.576892 | 8_3:+12619996 | None:intergenic |
| TCATCCAAATAACAAGGTTG+AGG | 0.580652 | 8_3:+12619356 | None:intergenic |
| TCTTCGACGTGGAATGTAGA+GGG | 0.580661 | 8_3:+12620121 | None:intergenic |
| ATACAATCAAACCTATGGTA+GGG | 0.582322 | 8_3:+12616765 | None:intergenic |
| AAGCAGCAGATTGCATCTTG+AGG | 0.583857 | 8_3:-12618467 | Msa1277390:CDS |
| CATCTTGAGGGTGATTGAGA+GGG | 0.588073 | 8_3:-12618454 | Msa1277390:CDS |
| GGAAGGTGAAATTGACGCGC+CGG | 0.588929 | 8_3:+12620083 | None:intergenic |
| AAGTGTCTGGTCCTGAGCAA+CGG | 0.596203 | 8_3:+12616793 | None:intergenic |
| ATCTTCGACGTGGAATGTAG+AGG | 0.600566 | 8_3:+12620120 | None:intergenic |
| GTTGGTGGATGAGGTTGTGG+TGG | 0.603656 | 8_3:+12620167 | None:intergenic |
| TCCAATGAACACGCTAGACA+TGG | 0.603721 | 8_3:+12616968 | None:intergenic |
| CGGTTGGAGAGAGTGAGTGA+GGG | 0.605462 | 8_3:+12620307 | None:intergenic |
| AATGACAATTTACGAAACAC+AGG | 0.607373 | 8_3:+12620409 | None:intergenic |
| GTGTCACTCACGCGCCGCCG+TGG | 0.608225 | 8_3:-12620236 | Msa1277390:five_prime_UTR |
| TCTTCAGTGAAAGTGGAACC+AGG | 0.609539 | 8_3:+12616942 | None:intergenic |
| TGGTATAGGTGAGTGAGCCA+CGG | 0.611375 | 8_3:+12620219 | None:intergenic |
| TAAACCTAAGGCTGTTTGGG+AGG | 0.614046 | 8_3:-12619291 | Msa1277390:CDS |
| CTTGTTATTTGGATGATGAG+AGG | 0.615113 | 8_3:-12619349 | Msa1277390:CDS |
| TCCGTAGAAAGATATATGAT+GGG | 0.622070 | 8_3:+12618423 | None:intergenic |
| CTTTCACTGAAGACATCTTG+CGG | 0.622202 | 8_3:-12616932 | Msa1277390:CDS |
| GTGGTCGTCGTCTTCGTCGG+AGG | 0.625911 | 8_3:+12620186 | None:intergenic |
| ACGGCGGCGCGTGAGTGACA+CGG | 0.627850 | 8_3:+12620238 | None:intergenic |
| CGAGCTGGCCGAATTACAAG+TGG | 0.629533 | 8_3:+12618339 | None:intergenic |
| TCGTCGGAGGAGGAATCCAT+TGG | 0.632241 | 8_3:+12620199 | None:intergenic |
| AATCTGCTGCTTGAGGGATG+GGG | 0.632784 | 8_3:+12618478 | None:intergenic |
| TGTGATGAGTATCTTTGCCA+AGG | 0.635336 | 8_3:-12616879 | Msa1277390:CDS |
| TGAATGAGGTGGTGAAGTAG+CGG | 0.637393 | 8_3:+12619984 | None:intergenic |
| GCAGAGTAGAGTGTAAGCAA+CGG | 0.654557 | 8_3:+12620354 | None:intergenic |
| TCGATCGGAGATGGAGTCGG+AGG | 0.656256 | 8_3:+12619961 | None:intergenic |
| ATGAAGATCGAAGATAATGA+CGG | 0.659935 | 8_3:-12616826 | Msa1277390:exon |
| GCAACGGAGATTGAATGTGT+CGG | 0.662212 | 8_3:+12620370 | None:intergenic |
| ATGAGGTGGTGAAGTAGCGG+CGG | 0.673475 | 8_3:+12619987 | None:intergenic |
| TGTTGAATCCACATAGAACA+GGG | 0.688035 | 8_3:-12619766 | Msa1277390:CDS |
| TGAAGAACCGAATATTGTAG+CGG | 0.689587 | 8_3:-12616856 | Msa1277390:CDS |
| CAATCAAACCTATGGTAGGG+CGG | 0.689615 | 8_3:+12616768 | None:intergenic |
| GAATGGGTTATGCAACCGGG+TGG | 0.697233 | 8_3:-12619155 | Msa1277390:CDS |
| GGAGTCGGAGGTGAATGAGG+TGG | 0.703315 | 8_3:+12619973 | None:intergenic |
| TCGACGTGGAATGTAGAGGG+AGG | 0.708402 | 8_3:+12620124 | None:intergenic |
| TTTGGGAGGATGAGGATACG+AGG | 0.712720 | 8_3:-12619277 | Msa1277390:CDS |
| TATAGGTGAGTGAGCCACGG+CGG | 0.722299 | 8_3:+12620222 | None:intergenic |
| TTGCGGCTGAGAAAGGACTG+GGG | 0.724371 | 8_3:-12616915 | Msa1277390:CDS |
| GGGAATTGAGATCTTCGACG+TGG | 0.734919 | 8_3:+12620110 | None:intergenic |
| GCGGCGCGTGAGTGACACGG+TGG | 0.780396 | 8_3:+12620241 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCATATTAATAAATGTTTA+GGG | - | chr8_3:12617518-12617537 | Msa1277390:intron | 10.0% |
| !! | TTCAAATTAAAAGAAAAAAT+GGG | + | chr8_3:12620407-12620426 | None:intergenic | 10.0% |
| !! | TTTCAAATTAAAAGAAAAAA+TGG | + | chr8_3:12620408-12620427 | None:intergenic | 10.0% |
| !!! | TAAATTGTCATTTTCATTTT+TGG | - | chr8_3:12616586-12616605 | Msa1277390:three_prime_UTR | 15.0% |
| !!! | ACTAAAAATTTATCCTTTTT+AGG | + | chr8_3:12617358-12617377 | None:intergenic | 15.0% |
| !! | GATCATATTAATAAATGTTT+AGG | - | chr8_3:12617517-12617536 | Msa1277390:intron | 15.0% |
| !!! | TTTAATTTCTCATAAGATTA+TGG | - | chr8_3:12618015-12618034 | Msa1277390:intron | 15.0% |
| !! | TTAATTTCTCATAAGATTAT+GGG | - | chr8_3:12618016-12618035 | Msa1277390:intron | 15.0% |
| !!! | AATCAGTATTTTGTAAATAA+AGG | + | chr8_3:12618939-12618958 | None:intergenic | 15.0% |
| !! | GAAATTCAAATTTCAATGTT+GGG | - | chr8_3:12617269-12617288 | Msa1277390:intron | 20.0% |
| !! | TAATTTCTCATAAGATTATG+GGG | - | chr8_3:12618017-12618036 | Msa1277390:intron | 20.0% |
| !! | ATTTACAAATGAAAGTTTCA+TGG | - | chr8_3:12618828-12618847 | Msa1277390:intron | 20.0% |
| !! | TTTACAAATGAAAGTTTCAT+GGG | - | chr8_3:12618829-12618848 | Msa1277390:intron | 20.0% |
| !! | TTTCATAGTGGTTTAAAAAT+TGG | + | chr8_3:12619838-12619857 | None:intergenic | 20.0% |
| !! | TACTCTCTTTCAATTTATTT+CGG | - | chr8_3:12619930-12619949 | Msa1277390:CDS | 20.0% |
| ! | ATTGATCCTGAATTCAATTT+CGG | - | chr8_3:12617247-12617266 | Msa1277390:intron | 25.0% |
| ! | GGAAATTCAAATTTCAATGT+TGG | - | chr8_3:12617268-12617287 | Msa1277390:intron | 25.0% |
| ! | TATTGAATGGAATCCTAAAA+AGG | - | chr8_3:12617342-12617361 | Msa1277390:intron | 25.0% |
| !!! | TGATAATCAACTTTAGAACT+TGG | + | chr8_3:12617475-12617494 | None:intergenic | 25.0% |
| !! | TGAATTTTCGAATGTTAAGA+AGG | - | chr8_3:12617564-12617583 | Msa1277390:intron | 25.0% |
| !! | GAATTTTCGAATGTTAAGAA+GGG | - | chr8_3:12617565-12617584 | Msa1277390:intron | 25.0% |
| !! | TTCTTATGATGATGATGTTA+TGG | - | chr8_3:12617771-12617790 | Msa1277390:intron | 25.0% |
| ! | TAAACCAGAAAAAGGAATAA+AGG | + | chr8_3:12617999-12618018 | None:intergenic | 25.0% |
| ! | TGAGAAATTAAACCAGAAAA+AGG | + | chr8_3:12618007-12618026 | None:intergenic | 25.0% |
| ! | TTAATCTAACACATAGATTC+AGG | + | chr8_3:12618089-12618108 | None:intergenic | 25.0% |
| !!! | AGTTGTTTTGTTTCATTTCA+TGG | - | chr8_3:12618320-12618339 | Msa1277390:CDS | 25.0% |
| ! | CACATGAAAAAAAATAAGCA+AGG | + | chr8_3:12618745-12618764 | None:intergenic | 25.0% |
| ! | TTAAACTTAAATAGTGTACC+TGG | - | chr8_3:12618767-12618786 | Msa1277390:intron | 25.0% |
| ! | ATTCATTATGTGTCTATTCT+AGG | - | chr8_3:12618904-12618923 | Msa1277390:intron | 25.0% |
| ! | TTTGTAAATTGTAACAGAAG+AGG | + | chr8_3:12618996-12619015 | None:intergenic | 25.0% |
| ! | GAATTTATTGTTGTAAGTTC+TGG | - | chr8_3:12619079-12619098 | Msa1277390:CDS | 25.0% |
| ! | TACTAAGCTTCAAACTTAAA+AGG | + | chr8_3:12619139-12619158 | None:intergenic | 25.0% |
| !! | TGTTATAACATTTTACTGTC+AGG | - | chr8_3:12619191-12619210 | Msa1277390:CDS | 25.0% |
| !!! | GTGTTTACAAGTTGTTATTT+TGG | + | chr8_3:12619522-12619541 | None:intergenic | 25.0% |
| ! | ATATCAAACCAAATTTAGCA+GGG | + | chr8_3:12619639-12619658 | None:intergenic | 25.0% |
| ! | TATGAGCCTACAAAAAAAAT+CGG | + | chr8_3:12619672-12619691 | None:intergenic | 25.0% |
| ! | TGACATAGTGGTTTAAAAAT+TGG | + | chr8_3:12619870-12619889 | None:intergenic | 25.0% |
| !! | TATGAATATTTTCACACTGA+AGG | - | chr8_3:12619963-12619982 | Msa1277390:CDS | 25.0% |
| ! | GAAAAATACAATCAAACCTA+TGG | + | chr8_3:12620227-12620246 | None:intergenic | 25.0% |
| AATGACAATTTACGAAACAC+AGG | + | chr8_3:12616578-12616597 | None:intergenic | 30.0% | |
| AATATGAAAGTGAGTGAGTT+TGG | + | chr8_3:12616721-12616740 | None:intergenic | 30.0% | |
| !!! | AATGTAGTGCTTTTTTTGGA+AGG | + | chr8_3:12616921-12616940 | None:intergenic | 30.0% |
| ! | TCAGATCTTCAATTAGCTTA+GGG | + | chr8_3:12617147-12617166 | None:intergenic | 30.0% |
| ! | TTCAGATCTTCAATTAGCTT+AGG | + | chr8_3:12617148-12617167 | None:intergenic | 30.0% |
| GAATTTCCGAAATTGAATTC+AGG | + | chr8_3:12617256-12617275 | None:intergenic | 30.0% | |
| CAAAGAGGAAAACTATTGAA+TGG | - | chr8_3:12617329-12617348 | Msa1277390:intron | 30.0% | |
| !! | TTAGTTGCTATTTGTGTTTC+CGG | - | chr8_3:12617373-12617392 | Msa1277390:intron | 30.0% |
| !! | AGAAAAGCATATGTTTTTCG+CGG | - | chr8_3:12617423-12617442 | Msa1277390:intron | 30.0% |
| TTTGCATATGAGTAAACCTA+AGG | - | chr8_3:12617681-12617700 | Msa1277390:intron | 30.0% | |
| !!! | TGATGTTTTTTATGCTGAAG+TGG | - | chr8_3:12617801-12617820 | Msa1277390:intron | 30.0% |
| ! | ACTTCATTGCTTTGCATTTT+CGG | - | chr8_3:12617944-12617963 | Msa1277390:intron | 30.0% |
| ! | ACTACCTTTATTCCTTTTTC+TGG | - | chr8_3:12617992-12618011 | Msa1277390:intron | 30.0% |
| ! | TGCTATTAAAGCTGATTCAA+CGG | + | chr8_3:12618152-12618171 | None:intergenic | 30.0% |
| TAGCAAACTTGAAATCAAAG+CGG | - | chr8_3:12618167-12618186 | Msa1277390:intron | 30.0% | |
| AGTCAACAACTCAAAATCTT+TGG | + | chr8_3:12618205-12618224 | None:intergenic | 30.0% | |
| TGTAAAAAGTTATGCATGCA+AGG | - | chr8_3:12618366-12618385 | Msa1277390:CDS | 30.0% | |
| AACATGAAAATGGACAAGTA+AGG | + | chr8_3:12618454-12618473 | None:intergenic | 30.0% | |
| CATTACTGCAAACATGAAAA+TGG | + | chr8_3:12618464-12618483 | None:intergenic | 30.0% | |
| ACCCATCATATATCTTTCTA+CGG | - | chr8_3:12618560-12618579 | Msa1277390:intron | 30.0% | |
| TCCGTAGAAAGATATATGAT+GGG | + | chr8_3:12618564-12618583 | None:intergenic | 30.0% | |
| ATCCGTAGAAAGATATATGA+TGG | + | chr8_3:12618565-12618584 | None:intergenic | 30.0% | |
| ATAAATTCAAGCGAAAACCA+GGG | + | chr8_3:12619067-12619086 | None:intergenic | 30.0% | |
| AATAAATTCAAGCGAAAACC+AGG | + | chr8_3:12619068-12619087 | None:intergenic | 30.0% | |
| ! | AACTTAAAAGGCCTTTTCAA+GGG | + | chr8_3:12619127-12619146 | None:intergenic | 30.0% |
| ! | AAACTTAAAAGGCCTTTTCA+AGG | + | chr8_3:12619128-12619147 | None:intergenic | 30.0% |
| ! | AACATTTTACTGTCAGGAAA+AGG | - | chr8_3:12619197-12619216 | Msa1277390:CDS | 30.0% |
| AGATACTTAAACTTATTCCC+GGG | + | chr8_3:12619303-12619322 | None:intergenic | 30.0% | |
| CAGATACTTAAACTTATTCC+CGG | + | chr8_3:12619304-12619323 | None:intergenic | 30.0% | |
| TTTGTCAGTAGAGAATTATC+TGG | + | chr8_3:12619435-12619454 | None:intergenic | 30.0% | |
| GTTAGTTAGTAGAAGTTAGT+TGG | + | chr8_3:12619568-12619587 | None:intergenic | 30.0% | |
| CATATCAAACCAAATTTAGC+AGG | + | chr8_3:12619640-12619659 | None:intergenic | 30.0% | |
| !! | CTGCTAAATTTGGTTTGATA+TGG | - | chr8_3:12619638-12619657 | Msa1277390:CDS | 30.0% |
| !!! | TAGTCACCGATTTTTTTTGT+AGG | - | chr8_3:12619663-12619682 | Msa1277390:CDS | 30.0% |
| ! | TTTTGTAGGCTCATAATGAA+AGG | - | chr8_3:12619677-12619696 | Msa1277390:CDS | 30.0% |
| ACATCAAATTGTTGACATAG+TGG | + | chr8_3:12619882-12619901 | None:intergenic | 30.0% | |
| ! | TCATTTTCCGCTACAATATT+CGG | + | chr8_3:12620138-12620157 | None:intergenic | 30.0% |
| ATGAAGATCGAAGATAATGA+CGG | - | chr8_3:12620158-12620177 | Msa1277390:CDS | 30.0% | |
| ATACAATCAAACCTATGGTA+GGG | + | chr8_3:12620222-12620241 | None:intergenic | 30.0% | |
| AATACAATCAAACCTATGGT+AGG | + | chr8_3:12620223-12620242 | None:intergenic | 30.0% | |
| ACTGTTATGTCACAAAATTC+AGG | + | chr8_3:12620368-12620387 | None:intergenic | 30.0% | |
| ! | TGAATTTTGTGACATAACAG+TGG | - | chr8_3:12620367-12620386 | Msa1277390:five_prime_UTR | 30.0% |
| ACAACTGTTATTGATAAGGT+TGG | + | chr8_3:12620432-12620451 | None:intergenic | 30.0% | |
| AACCTTATCAATAACAGTTG+TGG | - | chr8_3:12620431-12620450 | Msa1277390:five_prime_UTR | 30.0% | |
| !!! | CGAGAATGTAGTGCTTTTTT+TGG | + | chr8_3:12616925-12616944 | None:intergenic | 35.0% |
| TTCGGATTCTTTCATTCGAT+CGG | + | chr8_3:12617041-12617060 | None:intergenic | 35.0% | |
| !!! | GTTAGGGTTTTGATTCTGAT+CGG | + | chr8_3:12617125-12617144 | None:intergenic | 35.0% |
| ! | CTTCAATTAGCTTAGGGTTA+GGG | + | chr8_3:12617141-12617160 | None:intergenic | 35.0% |
| ! | TCTTCAATTAGCTTAGGGTT+AGG | + | chr8_3:12617142-12617161 | None:intergenic | 35.0% |
| TGTTGAATCCACATAGAACA+GGG | - | chr8_3:12617218-12617237 | Msa1277390:intron | 35.0% | |
| ATTACATTCCCTGTTCTATG+TGG | + | chr8_3:12617229-12617248 | None:intergenic | 35.0% | |
| TTGATCAGAGTTTGTCAAAG+AGG | - | chr8_3:12617314-12617333 | Msa1277390:intron | 35.0% | |
| CAAATGATTCGACATTTGAC+CGG | + | chr8_3:12617395-12617414 | None:intergenic | 35.0% | |
| !! | TTTGCCTCAACCTTGTTATT+TGG | - | chr8_3:12617624-12617643 | Msa1277390:intron | 35.0% |
| TCATCCAAATAACAAGGTTG+AGG | + | chr8_3:12617631-12617650 | None:intergenic | 35.0% | |
| CTCTCATCATCCAAATAACA+AGG | + | chr8_3:12617637-12617656 | None:intergenic | 35.0% | |
| !! | CTTGTTATTTGGATGATGAG+AGG | - | chr8_3:12617635-12617654 | Msa1277390:intron | 35.0% |
| TCCAAAGAAGAAAACTGTTC+AGG | - | chr8_3:12617732-12617751 | Msa1277390:intron | 35.0% | |
| ! | TCCTGAACAGTTTTCTTCTT+TGG | + | chr8_3:12617736-12617755 | None:intergenic | 35.0% |
| GAAAACTGTTCAGGATGTTA+TGG | - | chr8_3:12617741-12617760 | Msa1277390:intron | 35.0% | |
| GTAAGCAAAATAAGGCGATT+GGG | + | chr8_3:12617889-12617908 | None:intergenic | 35.0% | |
| AGTAAGCAAAATAAGGCGAT+TGG | + | chr8_3:12617890-12617909 | None:intergenic | 35.0% | |
| CGATTTATTCAGACATTCCT+TGG | - | chr8_3:12617916-12617935 | Msa1277390:intron | 35.0% | |
| TTATTCAGACATTCCTTGGA+AGG | - | chr8_3:12617920-12617939 | Msa1277390:intron | 35.0% | |
| !!! | GACACGGTTTTTTGAAATTC+TGG | - | chr8_3:12617968-12617987 | Msa1277390:intron | 35.0% |
| CTTGCATATGTAGTCAAGAT+CGG | - | chr8_3:12618119-12618138 | Msa1277390:intron | 35.0% | |
| !!! | TGCGTAGAATTTTTTACTGC+AGG | - | chr8_3:12618232-12618251 | Msa1277390:intron | 35.0% |
| !!! | GCGTAGAATTTTTTACTGCA+GGG | - | chr8_3:12618233-12618252 | Msa1277390:intron | 35.0% |
| GTTGGCACTTCATTCAAATT+TGG | + | chr8_3:12618261-12618280 | None:intergenic | 35.0% | |
| ! | TTTTCATGGCTCATGAGTTA+TGG | - | chr8_3:12618285-12618304 | Msa1277390:CDS | 35.0% |
| !! | AAAGAGAGCACTAAAATTGC+AGG | + | chr8_3:12618414-12618433 | None:intergenic | 35.0% |
| AAGTAAGGCAATATGGTAGA+GGG | + | chr8_3:12618439-12618458 | None:intergenic | 35.0% | |
| AATGGACAAGTAAGGCAATA+TGG | + | chr8_3:12618446-12618465 | None:intergenic | 35.0% | |
| !! | AAGATATATGATGGGTGCAT+CGG | + | chr8_3:12618556-12618575 | None:intergenic | 35.0% |
| AGTCTGTTCCACTTGTAATT+CGG | - | chr8_3:12618637-12618656 | Msa1277390:intron | 35.0% | |
| TCGGAATTCAGCAGAAAAAT+GGG | - | chr8_3:12618665-12618684 | Msa1277390:intron | 35.0% | |
| TTGTACAGGCATCATATTGA+GGG | - | chr8_3:12618696-12618715 | Msa1277390:intron | 35.0% | |
| GTAATCCTAATGATCAGCTT+TGG | + | chr8_3:12618807-12618826 | None:intergenic | 35.0% | |
| TGAAAGTTTCATGGGTAACT+TGG | - | chr8_3:12618837-12618856 | Msa1277390:intron | 35.0% | |
| !! | TTCAACGCTTCTCTAAGATA+TGG | + | chr8_3:12618885-12618904 | None:intergenic | 35.0% |
| TAAATTCAAGCGAAAACCAG+GGG | + | chr8_3:12619066-12619085 | None:intergenic | 35.0% | |
| !! | ACTTAAAAGGCCTTTTCAAG+GGG | + | chr8_3:12619126-12619145 | None:intergenic | 35.0% |
| ! | AAGGAAACTTTAAGAGCTGT+AGG | - | chr8_3:12619216-12619235 | Msa1277390:CDS | 35.0% |
| ! | GGAAACAAGTTGAATACCAT+AGG | + | chr8_3:12619243-12619262 | None:intergenic | 35.0% |
| TTCAAGGCTTAGACAACTAA+AGG | + | chr8_3:12619264-12619283 | None:intergenic | 35.0% | |
| CTTTGTGTAATTCCCCAAAA+CGG | - | chr8_3:12619336-12619355 | Msa1277390:CDS | 35.0% | |
| TTTGTGTAATTCCCCAAAAC+GGG | - | chr8_3:12619337-12619356 | Msa1277390:CDS | 35.0% | |
| ! | ACTCAATTCTATCCCGTTTT+GGG | + | chr8_3:12619352-12619371 | None:intergenic | 35.0% |
| ! | TACTCAATTCTATCCCGTTT+TGG | + | chr8_3:12619353-12619372 | None:intergenic | 35.0% |
| GTCTTTAAATATCCCTCGAA+TGG | + | chr8_3:12619489-12619508 | None:intergenic | 35.0% | |
| AATTTAGCAGGGATTCTGTA+AGG | + | chr8_3:12619628-12619647 | None:intergenic | 35.0% | |
| TACAGAATCCCTGCTAAATT+TGG | - | chr8_3:12619628-12619647 | Msa1277390:CDS | 35.0% | |
| ! | AAAATTTTCAGAGAGAGGGA+AGG | + | chr8_3:12619786-12619805 | None:intergenic | 35.0% |
| ! | CGCAAAAATTTTCAGAGAGA+GGG | + | chr8_3:12619790-12619809 | None:intergenic | 35.0% |
| AAACCACTATGAAAGCTGAT+TGG | - | chr8_3:12619844-12619863 | Msa1277390:CDS | 35.0% | |
| ! | GAATATTTTCACACTGAAGG+TGG | - | chr8_3:12619966-12619985 | Msa1277390:CDS | 35.0% |
| TGAAGAACCGAATATTGTAG+CGG | - | chr8_3:12620128-12620147 | Msa1277390:CDS | 35.0% | |
| ! | ATTTTGTGACATAACAGTGG+TGG | - | chr8_3:12620370-12620389 | Msa1277390:five_prime_UTR | 35.0% |
| CGAAACACAGGTTCAACAAA+TGG | + | chr8_3:12616566-12616585 | None:intergenic | 40.0% | |
| ! | GTGAGTTTGGTGAATCGTTA+GGG | + | chr8_3:12616708-12616727 | None:intergenic | 40.0% |
| ! | AGTGAGTTTGGTGAATCGTT+AGG | + | chr8_3:12616709-12616728 | None:intergenic | 40.0% |
| AAGATCTCAATTCCCGATTC+CGG | - | chr8_3:12616882-12616901 | Msa1277390:CDS | 40.0% | |
| TTCTTTCATTCGATCGGAGA+TGG | + | chr8_3:12617035-12617054 | None:intergenic | 40.0% | |
| ! | TTGAGAGACGTTGTTGTTGT+TGG | + | chr8_3:12617087-12617106 | None:intergenic | 40.0% |
| CTGATCGGAAGAGTTGAAAA+CGG | + | chr8_3:12617110-12617129 | None:intergenic | 40.0% | |
| CTGTTGAATCCACATAGAAC+AGG | - | chr8_3:12617217-12617236 | Msa1277390:intron | 40.0% | |
| TGATGAGAGGTTGAAGAAGT+TGG | - | chr8_3:12617648-12617667 | Msa1277390:intron | 40.0% | |
| AGAGGTTGAAGAAGTTGGAT+GGG | - | chr8_3:12617653-12617672 | Msa1277390:intron | 40.0% | |
| ! | TTGAAGAAGTTGGATGGGTT+GGG | - | chr8_3:12617658-12617677 | Msa1277390:intron | 40.0% |
| TGAGTAAACCTAAGGCTGTT+TGG | - | chr8_3:12617689-12617708 | Msa1277390:intron | 40.0% | |
| GAGTAAACCTAAGGCTGTTT+GGG | - | chr8_3:12617690-12617709 | Msa1277390:intron | 40.0% | |
| ! | GATGATGATGTTATGGCGAT+TGG | - | chr8_3:12617778-12617797 | Msa1277390:intron | 40.0% |
| ! | GTCTTGCATTGATGAGCAAT+CGG | + | chr8_3:12617856-12617875 | None:intergenic | 40.0% |
| GCTGAGCAGTAAGCAAAATA+AGG | + | chr8_3:12617897-12617916 | None:intergenic | 40.0% | |
| AAGCAATGAAGTTCCTTCCA+AGG | + | chr8_3:12617936-12617955 | None:intergenic | 40.0% | |
| CGATCTTGACTACATATGCA+AGG | + | chr8_3:12618121-12618140 | None:intergenic | 40.0% | |
| ! | AAGTGCCAACTGCATTTTCA+TGG | - | chr8_3:12618271-12618290 | Msa1277390:intron | 40.0% |
| ATGAGCCATGAAAATGCAGT+TGG | + | chr8_3:12618279-12618298 | None:intergenic | 40.0% | |
| CAAGTAAGGCAATATGGTAG+AGG | + | chr8_3:12618440-12618459 | None:intergenic | 40.0% | |
| CTCGGAATTCAGCAGAAAAA+TGG | - | chr8_3:12618664-12618683 | Msa1277390:intron | 40.0% | |
| ! | AATGGGATGCTTTGTTGTAC+AGG | - | chr8_3:12618682-12618701 | Msa1277390:intron | 40.0% |
| GTTGTACAGGCATCATATTG+AGG | - | chr8_3:12618695-12618714 | Msa1277390:intron | 40.0% | |
| TCATATTGAGGGAGATTCAC+AGG | - | chr8_3:12618707-12618726 | Msa1277390:intron | 40.0% | |
| !! | CAGCTTTGGATGGTGAATTT+AGG | + | chr8_3:12618793-12618812 | None:intergenic | 40.0% |
| ACCATCCAAAGCTGATCATT+AGG | - | chr8_3:12618799-12618818 | Msa1277390:intron | 40.0% | |
| !! | TCCTAATGATCAGCTTTGGA+TGG | + | chr8_3:12618803-12618822 | None:intergenic | 40.0% |
| TTTAAGAGCTGTAGGTCCTA+TGG | - | chr8_3:12619224-12619243 | Msa1277390:CDS | 40.0% | |
| TAGTTGTCTAAGCCTTGAAG+CGG | - | chr8_3:12619265-12619284 | Msa1277390:CDS | 40.0% | |
| ! | CTCAATTCTATCCCGTTTTG+GGG | + | chr8_3:12619351-12619370 | None:intergenic | 40.0% |
| AGATGATAACCTTCCACACA+AGG | - | chr8_3:12619380-12619399 | Msa1277390:CDS | 40.0% | |
| AGAGAATTATCTGGCGTGAA+AGG | + | chr8_3:12619426-12619445 | None:intergenic | 40.0% | |
| AATATCCCTCGAATGGTAGA+GGG | + | chr8_3:12619482-12619501 | None:intergenic | 40.0% | |
| AAATATCCCTCGAATGGTAG+AGG | + | chr8_3:12619483-12619502 | None:intergenic | 40.0% | |
| ! | GCGCAAAAATTTTCAGAGAG+AGG | + | chr8_3:12619791-12619810 | None:intergenic | 40.0% |
| CAAGATGTCTTCAGTGAAAG+TGG | + | chr8_3:12620052-12620071 | None:intergenic | 40.0% | |
| CTTTCACTGAAGACATCTTG+CGG | - | chr8_3:12620052-12620071 | Msa1277390:CDS | 40.0% | |
| TGTGATGAGTATCTTTGCCA+AGG | - | chr8_3:12620105-12620124 | Msa1277390:CDS | 40.0% | |
| CAATATTCGGTTCTTCACCT+TGG | + | chr8_3:12620125-12620144 | None:intergenic | 40.0% | |
| GCAACGGAGATTGAATGTGT+CGG | + | chr8_3:12616617-12616636 | None:intergenic | 45.0% | |
| GCAGAGTAGAGTGTAAGCAA+CGG | + | chr8_3:12616633-12616652 | None:intergenic | 45.0% | |
| GAGGAGGAATCCATTGGTAT+AGG | + | chr8_3:12616782-12616801 | None:intergenic | 45.0% | |
| TCTTCGACGTGGAATGTAGA+GGG | + | chr8_3:12616866-12616885 | None:intergenic | 45.0% | |
| ATCTTCGACGTGGAATGTAG+AGG | + | chr8_3:12616867-12616886 | None:intergenic | 45.0% | |
| AGAAGAAGAGGAAGAGAAGG+AGG | + | chr8_3:12616964-12616983 | None:intergenic | 45.0% | |
| CTGAGAAGAAGAGGAAGAGA+AGG | + | chr8_3:12616967-12616986 | None:intergenic | 45.0% | |
| TGAATGAGGTGGTGAAGTAG+CGG | + | chr8_3:12617003-12617022 | None:intergenic | 45.0% | |
| GAGGTAAATGGCGCGTAATT+CGG | + | chr8_3:12617059-12617078 | None:intergenic | 45.0% | |
| TTGTTGGCGCAAGAGGTAAA+TGG | + | chr8_3:12617071-12617090 | None:intergenic | 45.0% | |
| GAGAGGTTGAAGAAGTTGGA+TGG | - | chr8_3:12617652-12617671 | Msa1277390:intron | 45.0% | |
| GTTGAAGAAGTTGGATGGGT+TGG | - | chr8_3:12617657-12617676 | Msa1277390:intron | 45.0% | |
| TAAACCTAAGGCTGTTTGGG+AGG | - | chr8_3:12617693-12617712 | Msa1277390:intron | 45.0% | |
| ATGCTGAAGTGGAGCATGAA+TGG | - | chr8_3:12617812-12617831 | Msa1277390:intron | 45.0% | |
| TGCTGAAGTGGAGCATGAAT+GGG | - | chr8_3:12617813-12617832 | Msa1277390:intron | 45.0% | |
| !! | GCATGAATGGGTTATGCAAC+CGG | - | chr8_3:12617825-12617844 | Msa1277390:intron | 45.0% |
| !! | CATGAATGGGTTATGCAACC+GGG | - | chr8_3:12617826-12617845 | Msa1277390:intron | 45.0% |
| ! | GCTTTGCATTTTCGGAGACA+CGG | - | chr8_3:12617952-12617971 | Msa1277390:intron | 45.0% |
| ! | AGATGCAATCTGCTGCTTGA+GGG | + | chr8_3:12618515-12618534 | None:intergenic | 45.0% |
| ! | AAGATGCAATCTGCTGCTTG+AGG | + | chr8_3:12618516-12618535 | None:intergenic | 45.0% |
| AAGCAGCAGATTGCATCTTG+AGG | - | chr8_3:12618517-12618536 | Msa1277390:intron | 45.0% | |
| AGCAGCAGATTGCATCTTGA+GGG | - | chr8_3:12618518-12618537 | Msa1277390:intron | 45.0% | |
| CATCTTGAGGGTGATTGAGA+GGG | - | chr8_3:12618530-12618549 | Msa1277390:intron | 45.0% | |
| GATGCAGCTGAAAGTGAAAC+TGG | - | chr8_3:12618582-12618601 | Msa1277390:intron | 45.0% | |
| ! | CAGTCACTGATTGTGCTGAA+TGG | - | chr8_3:12618612-12618631 | Msa1277390:intron | 45.0% |
| ! | TTTTCTGCTGAATTCCGAGC+TGG | + | chr8_3:12618663-12618682 | None:intergenic | 45.0% |
| TTGGATGGTGAATTTAGGCC+AGG | + | chr8_3:12618788-12618807 | None:intergenic | 45.0% | |
| !! | ACAACTGTTGATAATGCCCC+TGG | - | chr8_3:12619047-12619066 | Msa1277390:CDS | 45.0% |
| !! | CCTTTTCAAGGGGAAAAAGG+GGG | + | chr8_3:12619116-12619135 | None:intergenic | 45.0% |
| !! | GCCTTTTCAAGGGGAAAAAG+GGG | + | chr8_3:12619117-12619136 | None:intergenic | 45.0% |
| !! | GGCCTTTTCAAGGGGAAAAA+GGG | + | chr8_3:12619118-12619137 | None:intergenic | 45.0% |
| !! | AGGCCTTTTCAAGGGGAAAA+AGG | + | chr8_3:12619119-12619138 | None:intergenic | 45.0% |
| AGTTGTCTAAGCCTTGAAGC+GGG | - | chr8_3:12619266-12619285 | Msa1277390:CDS | 45.0% | |
| !! | TGAAAGGAGAGTGCTCCTTT+GGG | + | chr8_3:12619410-12619429 | None:intergenic | 45.0% |
| ATATCCCTCGAATGGTAGAG+GGG | + | chr8_3:12619481-12619500 | None:intergenic | 45.0% | |
| TGGCCAATCAGCTTTCATAG+TGG | + | chr8_3:12619850-12619869 | None:intergenic | 45.0% | |
| ACTGAAGGTGGAAGCTATGT+TGG | - | chr8_3:12619978-12619997 | Msa1277390:CDS | 45.0% | |
| TCCAATGAACACGCTAGACA+TGG | + | chr8_3:12620019-12620038 | None:intergenic | 45.0% | |
| TCTTCAGTGAAAGTGGAACC+AGG | + | chr8_3:12620045-12620064 | None:intergenic | 45.0% | |
| CAATCAAACCTATGGTAGGG+CGG | + | chr8_3:12620219-12620238 | None:intergenic | 45.0% | |
| GAGTGAGTGAGGGAGTGATT+TGG | + | chr8_3:12616670-12616689 | None:intergenic | 50.0% | |
| !! | AATCGTTAGGGTGACTCGGT+TGG | + | chr8_3:12616696-12616715 | None:intergenic | 50.0% |
| GGTGAATCGTTAGGGTGACT+CGG | + | chr8_3:12616700-12616719 | None:intergenic | 50.0% | |
| TGGTATAGGTGAGTGAGCCA+CGG | + | chr8_3:12616768-12616787 | None:intergenic | 50.0% | |
| GGCTCACTCACCTATACCAA+TGG | - | chr8_3:12616769-12616788 | Msa1277390:three_prime_UTR | 50.0% | |
| !! | AATGTAGAGGGAGGTGTTCG+GGG | + | chr8_3:12616854-12616873 | None:intergenic | 50.0% |
| !! | GAATGTAGAGGGAGGTGTTC+GGG | + | chr8_3:12616855-12616874 | None:intergenic | 50.0% |
| !! | GGAATGTAGAGGGAGGTGTT+CGG | + | chr8_3:12616856-12616875 | None:intergenic | 50.0% |
| GGGAATTGAGATCTTCGACG+TGG | + | chr8_3:12616877-12616896 | None:intergenic | 50.0% | |
| TGAAATTGACGCGCCGGAAT+CGG | + | chr8_3:12616898-12616917 | None:intergenic | 50.0% | |
| AAGGAGGAGGAGAAGGAGAA+TGG | + | chr8_3:12616948-12616967 | None:intergenic | 50.0% | |
| AGAAGAGGAAGAGAAGGAGG+AGG | + | chr8_3:12616961-12616980 | None:intergenic | 50.0% | |
| GATTGGGGACTGAGAAGAAG+AGG | + | chr8_3:12616976-12616995 | None:intergenic | 50.0% | |
| CATTCGATCGGAGATGGAGT+CGG | + | chr8_3:12617029-12617048 | None:intergenic | 50.0% | |
| ! | GTTGTTGTTGTTGGCGCAAG+AGG | + | chr8_3:12617078-12617097 | None:intergenic | 50.0% |
| ! | TTTTCGCGGCGATTCTGAAC+AGG | - | chr8_3:12617437-12617456 | Msa1277390:intron | 50.0% |
| TTTCGCGGCGATTCTGAACA+GGG | - | chr8_3:12617438-12617457 | Msa1277390:intron | 50.0% | |
| ! | GGCGATTCTGAACAGGGTTT+TGG | - | chr8_3:12617444-12617463 | Msa1277390:intron | 50.0% |
| TCATCCTCCCAAACAGCCTT+AGG | + | chr8_3:12617700-12617719 | None:intergenic | 50.0% | |
| TAAGGCTGTTTGGGAGGATG+AGG | - | chr8_3:12617699-12617718 | Msa1277390:intron | 50.0% | |
| TTTGGGAGGATGAGGATACG+AGG | - | chr8_3:12617707-12617726 | Msa1277390:intron | 50.0% | |
| GGGATGGGGAAAAAGCAACT+AGG | + | chr8_3:12618495-12618514 | None:intergenic | 50.0% | |
| ! | AATCTGCTGCTTGAGGGATG+GGG | + | chr8_3:12618509-12618528 | None:intergenic | 50.0% |
| ! | CAATCTGCTGCTTGAGGGAT+GGG | + | chr8_3:12618510-12618529 | None:intergenic | 50.0% |
| GCATCTTGAGGGTGATTGAG+AGG | - | chr8_3:12618529-12618548 | Msa1277390:intron | 50.0% | |
| CACTTGTAATTCGGCCAGCT+CGG | - | chr8_3:12618646-12618665 | Msa1277390:intron | 50.0% | |
| AAGCTTGTGACCTTGCGCTA+AGG | - | chr8_3:12618968-12618987 | Msa1277390:intron | 50.0% | |
| ! | CCCCCTTTTTCCCCTTGAAA+AGG | - | chr8_3:12619113-12619132 | Msa1277390:CDS | 50.0% |
| TCTAAGCCTTGAAGCGGGAT+TGG | - | chr8_3:12619271-12619290 | Msa1277390:CDS | 50.0% | |
| !! | GAAAGGAGAGTGCTCCTTTG+GGG | + | chr8_3:12619409-12619428 | None:intergenic | 50.0% |
| !! | GTGAAAGGAGAGTGCTCCTT+TGG | + | chr8_3:12619411-12619430 | None:intergenic | 50.0% |
| ATCTTCCCCTCTACCATTCG+AGG | - | chr8_3:12619473-12619492 | Msa1277390:CDS | 50.0% | |
| TCTTCCCCTCTACCATTCGA+GGG | - | chr8_3:12619474-12619493 | Msa1277390:CDS | 50.0% | |
| GCCATGTCTAGCGTGTTCAT+TGG | - | chr8_3:12620015-12620034 | Msa1277390:CDS | 50.0% | |
| AGACATCTTGCGGCTGAGAA+AGG | - | chr8_3:12620062-12620081 | Msa1277390:CDS | 50.0% | |
| !! | GTTTTCTTGTGCCGTTGCTC+AGG | - | chr8_3:12620180-12620199 | Msa1277390:CDS | 50.0% |
| AAGTGTCTGGTCCTGAGCAA+CGG | + | chr8_3:12620194-12620213 | None:intergenic | 50.0% | |
| CGGTTGGAGAGAGTGAGTGA+GGG | + | chr8_3:12616680-12616699 | None:intergenic | 55.0% | |
| TCGGTTGGAGAGAGTGAGTG+AGG | + | chr8_3:12616681-12616700 | None:intergenic | 55.0% | |
| TATAGGTGAGTGAGCCACGG+CGG | + | chr8_3:12616765-12616784 | None:intergenic | 55.0% | |
| TCGTCGGAGGAGGAATCCAT+TGG | + | chr8_3:12616788-12616807 | None:intergenic | 55.0% | |
| ! | GTTGGTGGATGAGGTTGTGG+TGG | + | chr8_3:12616820-12616839 | None:intergenic | 55.0% |
| !! | AGGGTTGGTGGATGAGGTTG+TGG | + | chr8_3:12616823-12616842 | None:intergenic | 55.0% |
| !! | TTGTGGAGGGTTGGTGGATG+AGG | + | chr8_3:12616829-12616848 | None:intergenic | 55.0% |
| !! | TTCGGGGTTTTGTGGAGGGT+TGG | + | chr8_3:12616838-12616857 | None:intergenic | 55.0% |
| !! | GGTGTTCGGGGTTTTGTGGA+GGG | + | chr8_3:12616842-12616861 | None:intergenic | 55.0% |
| !! | AGGTGTTCGGGGTTTTGTGG+AGG | + | chr8_3:12616843-12616862 | None:intergenic | 55.0% |
| TCGACGTGGAATGTAGAGGG+AGG | + | chr8_3:12616863-12616882 | None:intergenic | 55.0% | |
| GAAATTGACGCGCCGGAATC+GGG | + | chr8_3:12616897-12616916 | None:intergenic | 55.0% | |
| GGAAGGTGAAATTGACGCGC+CGG | + | chr8_3:12616904-12616923 | None:intergenic | 55.0% | |
| GGAAGAGAAGGAGGAGGAGA+AGG | + | chr8_3:12616955-12616974 | None:intergenic | 55.0% | |
| TGAAGTAGCGGCGGAGATTG+GGG | + | chr8_3:12616991-12617010 | None:intergenic | 55.0% | |
| GTGAAGTAGCGGCGGAGATT+GGG | + | chr8_3:12616992-12617011 | None:intergenic | 55.0% | |
| ATGAGGTGGTGAAGTAGCGG+CGG | + | chr8_3:12617000-12617019 | None:intergenic | 55.0% | |
| GATGGAGTCGGAGGTGAATG+AGG | + | chr8_3:12617017-12617036 | None:intergenic | 55.0% | |
| !! | GAATGGGTTATGCAACCGGG+TGG | - | chr8_3:12617829-12617848 | Msa1277390:intron | 55.0% |
| TGATGAGCAATCGGTCCACC+CGG | + | chr8_3:12617847-12617866 | None:intergenic | 55.0% | |
| ! | GCAATCTGCTGCTTGAGGGA+TGG | + | chr8_3:12618511-12618530 | None:intergenic | 55.0% |
| CGAGCTGGCCGAATTACAAG+TGG | + | chr8_3:12618648-12618667 | None:intergenic | 55.0% | |
| AGAAGAGGAGCCTTAGCGCA+AGG | + | chr8_3:12618981-12619000 | None:intergenic | 55.0% | |
| CTGAAGCCAATCCCGCTTCA+AGG | + | chr8_3:12619280-12619299 | None:intergenic | 55.0% | |
| !! | TTGGGGTAGCCTTGTGTGGA+AGG | + | chr8_3:12619392-12619411 | None:intergenic | 55.0% |
| TCCACACAAGGCTACCCCAA+AGG | - | chr8_3:12619392-12619411 | Msa1277390:CDS | 55.0% | |
| !! | TCCTTTGGGGTAGCCTTGTG+TGG | + | chr8_3:12619396-12619415 | None:intergenic | 55.0% |
| ! | AGCGTGTTCATTGGAGCACC+TGG | - | chr8_3:12620024-12620043 | Msa1277390:CDS | 55.0% |
| TCTTGCGGCTGAGAAAGGAC+TGG | - | chr8_3:12620067-12620086 | Msa1277390:CDS | 55.0% | |
| CTTGCGGCTGAGAAAGGACT+GGG | - | chr8_3:12620068-12620087 | Msa1277390:CDS | 55.0% | |
| TTGCGGCTGAGAAAGGACTG+GGG | - | chr8_3:12620069-12620088 | Msa1277390:CDS | 55.0% | |
| ACACTTGACCGCCCTACCAT+AGG | - | chr8_3:12620208-12620227 | Msa1277390:exon | 55.0% | |
| GTGGTGGTCGTCGTCTTCGT+CGG | + | chr8_3:12616804-12616823 | None:intergenic | 60.0% | |
| !! | GGGGTTTTGTGGAGGGTTGG+TGG | + | chr8_3:12616835-12616854 | None:intergenic | 60.0% |
| !!! | GGGAGGTGTTCGGGGTTTTG+TGG | + | chr8_3:12616846-12616865 | None:intergenic | 60.0% |
| GGTGAAGTAGCGGCGGAGAT+TGG | + | chr8_3:12616993-12617012 | None:intergenic | 60.0% | |
| GGAGTCGGAGGTGAATGAGG+TGG | + | chr8_3:12617014-12617033 | None:intergenic | 60.0% | |
| TCGATCGGAGATGGAGTCGG+AGG | + | chr8_3:12617026-12617045 | None:intergenic | 60.0% | |
| !! | AAGCGGGATTGGCTTCAGCC+CGG | - | chr8_3:12619282-12619301 | Msa1277390:CDS | 60.0% |
| TGGTAGGGCGGTCAAGTGTC+TGG | + | chr8_3:12620207-12620226 | None:intergenic | 60.0% | |
| GTCGTCGTCTTCGTCGGAGG+AGG | + | chr8_3:12616798-12616817 | None:intergenic | 65.0% | |
| GTGGTCGTCGTCTTCGTCGG+AGG | + | chr8_3:12616801-12616820 | None:intergenic | 65.0% | |
| !! | AGCGGGATTGGCTTCAGCCC+GGG | - | chr8_3:12619283-12619302 | Msa1277390:CDS | 65.0% |
| ACGGCGGCGCGTGAGTGACA+CGG | + | chr8_3:12616749-12616768 | None:intergenic | 70.0% | |
| GCGGCGCGTGAGTGACACGG+TGG | + | chr8_3:12616746-12616765 | None:intergenic | 75.0% | |
| ! | GTGTCACTCACGCGCCGCCG+TGG | - | chr8_3:12616748-12616767 | Msa1277390:three_prime_UTR | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 12616552 | 12620454 | 12616552 | ID=Msa1277390;Name=Msa1277390 |
| chr8_3 | mRNA | 12616552 | 12620454 | 12616552 | ID=Msa1277390-mRNA-1;Parent=Msa1277390;Name=Msa1277390-mRNA-1;_AED=0.04;_eAED=0.04;_QI=236|1|1|1|1|1|3|293|542 |
| chr8_3 | exon | 12616552 | 12617021 | 12616552 | ID=Msa1277390-mRNA-1:exon:5125;Parent=Msa1277390-mRNA-1 |
| chr8_3 | exon | 12618278 | 12618527 | 12618278 | ID=Msa1277390-mRNA-1:exon:5124;Parent=Msa1277390-mRNA-1 |
| chr8_3 | exon | 12619017 | 12620454 | 12619017 | ID=Msa1277390-mRNA-1:exon:5123;Parent=Msa1277390-mRNA-1 |
| chr8_3 | five_prime_UTR | 12620219 | 12620454 | 12620219 | ID=Msa1277390-mRNA-1:five_prime_utr;Parent=Msa1277390-mRNA-1 |
| chr8_3 | CDS | 12619017 | 12620218 | 12619017 | ID=Msa1277390-mRNA-1:cds;Parent=Msa1277390-mRNA-1 |
| chr8_3 | CDS | 12618278 | 12618527 | 12618278 | ID=Msa1277390-mRNA-1:cds;Parent=Msa1277390-mRNA-1 |
| chr8_3 | CDS | 12616845 | 12617021 | 12616845 | ID=Msa1277390-mRNA-1:cds;Parent=Msa1277390-mRNA-1 |
| chr8_3 | three_prime_UTR | 12616552 | 12616844 | 12616552 | ID=Msa1277390-mRNA-1:three_prime_utr;Parent=Msa1277390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
