AlfalfaGEDB | Msa1277390

M. sativa cultivar zhongmu-4 / Msa1277390

KEGG: K03691
GO: GO:0003674 GO:0003824 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008417 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0034645 GO:0036065 GO:0036066 GO:0036211 GO:0043170 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0046922 GO:0070085 GO:0071704 GO:0140096 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576
PFAM: PF10250.12

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1277390	sp\|Q84WU0\|OFUT5_ARATH	60.424	566	193	8	3	542	4	564	0.0	688

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1277390	G7L9X3	99.077	542	5	0	1	542	1	542	0.0	1117

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0176900	Msa1277390	0.814637	1.392307e-51	-8.615850e-47
Msa0544480	Msa1277390	0.800462	1.425261e-48	-8.615850e-47
Msa0826120	Msa1277390	0.813073	3.078817e-51	-8.615850e-47
Msa0860620	Msa1277390	0.805259	1.455300e-49	-8.615850e-47
Msa1031390	Msa1277390	0.800814	1.207742e-48	-8.615850e-47
Msa1175430	Msa1277390	0.816701	4.828048e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1277390	MtrunA17_Chr8g0345431	99.077	542	5	0	1	542	1	542	0.0	1117
Msa1277390	MtrunA17_Chr2g0277611	80.952	105	16	2	261	364	3	104	1.54e-47	160

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1277390	AT1G17270.2	60.424	566	193	8	3	542	4	564	688
Msa1277390	AT1G17270.1	60.424	566	193	8	3	542	4	564	688
Msa1277390	AT5G50420.1	60.457	569	190	9	3	542	4	566	672
Msa1277390	AT1G53770.1	59.253	562	188	10	6	542	18	563	660
Msa1277390	AT1G53770.2	55.333	600	189	11	6	542	18	601	638

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Find 160 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCTTATCAATAACAGTTG+TGG	0.572975	8_3:-12616553	Msa1277390:three_prime_UTR
AAGATATATGATGGGTGCAT+CGG	0.573461	8_3:+12618431	None:intergenic
AAGATCTCAATTCCCGATTC+CGG	0.397943	8_3:-12620102	Msa1277390:CDS
AAGATGCAATCTGCTGCTTG+AGG	0.535947	8_3:+12618471	None:intergenic
AAGCAATGAAGTTCCTTCCA+AGG	0.569377	8_3:+12619051	None:intergenic
AAGCAGCAGATTGCATCTTG+AGG	0.583857	8_3:-12618467	Msa1277390:CDS
AAGGAGGAGGAGAAGGAGAA+TGG	0.435348	8_3:+12620039	None:intergenic
AAGTGTCTGGTCCTGAGCAA+CGG	0.596203	8_3:+12616793	None:intergenic
AATACAATCAAACCTATGGT+AGG	0.524008	8_3:+12616764	None:intergenic
AATATGAAAGTGAGTGAGTT+TGG	0.364604	8_3:+12620266	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGACAATTTACGAAACAC+AGG	+	chr8_3:12616578-12616597	None:intergenic	30.0%
AATATGAAAGTGAGTGAGTT+TGG	+	chr8_3:12616721-12616740	None:intergenic	30.0%
GAATTTCCGAAATTGAATTC+AGG	+	chr8_3:12617256-12617275	None:intergenic	30.0%
CAAAGAGGAAAACTATTGAA+TGG	-	chr8_3:12617329-12617348	Msa1277390:intron	30.0%
TTTGCATATGAGTAAACCTA+AGG	-	chr8_3:12617681-12617700	Msa1277390:intron	30.0%
TAGCAAACTTGAAATCAAAG+CGG	-	chr8_3:12618167-12618186	Msa1277390:intron	30.0%
AGTCAACAACTCAAAATCTT+TGG	+	chr8_3:12618205-12618224	None:intergenic	30.0%
TGTAAAAAGTTATGCATGCA+AGG	-	chr8_3:12618366-12618385	Msa1277390:CDS	30.0%
AACATGAAAATGGACAAGTA+AGG	+	chr8_3:12618454-12618473	None:intergenic	30.0%
CATTACTGCAAACATGAAAA+TGG	+	chr8_3:12618464-12618483	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	12616552	12620454	12616552	ID=Msa1277390;Name=Msa1277390
chr8_3	mRNA	12616552	12620454	12616552	ID=Msa1277390-mRNA-1;Parent=Msa1277390;Name=Msa1277390-mRNA-1;_AED=0.04;_eAED=0.04;_QI=236\|1\|1\|1\|1\|1\|3\|293\|542
chr8_3	exon	12616552	12617021	12616552	ID=Msa1277390-mRNA-1:exon:5125;Parent=Msa1277390-mRNA-1
chr8_3	exon	12618278	12618527	12618278	ID=Msa1277390-mRNA-1:exon:5124;Parent=Msa1277390-mRNA-1
chr8_3	exon	12619017	12620454	12619017	ID=Msa1277390-mRNA-1:exon:5123;Parent=Msa1277390-mRNA-1
chr8_3	five_prime_UTR	12620219	12620454	12620219	ID=Msa1277390-mRNA-1:five_prime_utr;Parent=Msa1277390-mRNA-1
chr8_3	CDS	12619017	12620218	12619017	ID=Msa1277390-mRNA-1:cds;Parent=Msa1277390-mRNA-1
chr8_3	CDS	12618278	12618527	12618278	ID=Msa1277390-mRNA-1:cds;Parent=Msa1277390-mRNA-1
chr8_3	CDS	12616845	12617021	12616845	ID=Msa1277390-mRNA-1:cds;Parent=Msa1277390-mRNA-1
chr8_3	three_prime_UTR	12616552	12616844	12616552	ID=Msa1277390-mRNA-1:three_prime_utr;Parent=Msa1277390-mRNA-1

Gene Sequence

>Msa1277390

ATGGATTCCTCCTCCGACGAAGACGACGACCACCACAACCTCATCCACCAACCCTCCACAAAACCCCGAACACCTCCCTCTACATTCCACGTCGAAGATCTCAATTCCCGATTCCGGCGCGTCAATTTCACCTTCCAAAAAAAGCACTACATTCTCGCCATTCTCCTTCTCCTCCTCCTTCTCTTCCTCTTCTTCTCAGTCCCCAATCTCCGCCGCTACTTCACCACCTCATTCACCTCCGACTCCATCTCCGATCGAATGAAAGAATCCGAATTACGCGCCATTTACCTCTTGCGCCAACAACAACAACGTCTCTCAACCGTTTTCAACTCTTCCGATCAGAATCAAAACCCTAACCCTAAGCTAATTGAAGATCTGAAATCTGCATTATTCAAACAGATTTCAATAAACAATGAAATTCAGCAGATTCTGTTGAATCCACATAGAACAGGGAATGTAATTGATCCTGAATTCAATTTCGGAAATTCAAATTTCAATGTTGGGAATTACGATAGATGTAGAACTGTTGATCAGAGTTTGTCAAAGAGGAAAACTATTGAATGGAATCCTAAAAAGGATAAATTTTTAGTTGCTATTTGTGTTTCCGGTCAAATGTCGAATCATTTGATTTGTTTAGAAAAGCATATGTTTTTCGCGGCGATTCTGAACAGGGTTTTGGTGATTCCAAGTTCTAAAGTTGATTATCAGTATGATAGAGTTGTTGATATTGATCATATTAATAAATGTTTAGGGAAAAAAGTTGTGATGTCTTTTGATGAATTTTCGAATGTTAAGAAGGGTCATTTGCATATTGATAAGTTTCTTTGTTATTTTGCTTTGCCTCAACCTTGTTATTTGGATGATGAGAGGTTGAAGAAGTTGGATGGGTTGGGTTTGCATATGAGTAAACCTAAGGCTGTTTGGGAGGATGAGGATACGAGGAATCCAAAGAAGAAAACTGTTCAGGATGTTATGGATAAGTTTTCTTATGATGATGATGTTATGGCGATTGGTGATGTTTTTTATGCTGAAGTGGAGCATGAATGGGTTATGCAACCGGGTGGACCGATTGCTCATCAATGCAAGACTTTGATTGAACCCAATCGCCTTATTTTGCTTACTGCTCAGCGATTTATTCAGACATTCCTTGGAAGGAACTTCATTGCTTTGCATTTTCGGAGACACGGTTTTTTGAAATTCTGTAATGCTAAAAAACCTAGTTGCTTTTTCCCCATCCCTCAAGCAGCAGATTGCATCTTGAGGGTGATTGAGAGGGCCGATGCACCCATCATATATCTTTCTACGGATGCAGCTGAAAGTGAAACTGGTCTACTTCAGTCACTGATTGTGCTGAATGGCAAGTCTGTTCCACTTGTAATTCGGCCAGCTCGGAATTCAGCAGAAAAATGGGATGCTTTGTTGTACAGGCATCATATTGAGGGAGATTCACAGGTGGAAGCTATGTTGGACAAGACTATATGTGCCATGTCTAGCGTGTTCATTGGAGCACCTGGTTCCACTTTCACTGAAGACATCTTGCGGCTGAGAAAGGACTGGGGATCAGCATCGTTGTGTGATGAGTATCTTTGCCAAGGTGAAGAACCGAATATTGTAGCGGAAAATGAATGA

Protein sequence

>Msa1277390

MDSSSDEDDDHHNLIHQPSTKPRTPPSTFHVEDLNSRFRRVNFTFQKKHYILAILLLLLLLFLFFSVPNLRRYFTTSFTSDSISDRMKESELRAIYLLRQQQQRLSTVFNSSDQNQNPNPKLIEDLKSALFKQISINNEIQQILLNPHRTGNVIDPEFNFGNSNFNVGNYDRCRTVDQSLSKRKTIEWNPKKDKFLVAICVSGQMSNHLICLEKHMFFAAILNRVLVIPSSKVDYQYDRVVDIDHINKCLGKKVVMSFDEFSNVKKGHLHIDKFLCYFALPQPCYLDDERLKKLDGLGLHMSKPKAVWEDEDTRNPKKKTVQDVMDKFSYDDDVMAIGDVFYAEVEHEWVMQPGGPIAHQCKTLIEPNRLILLTAQRFIQTFLGRNFIALHFRRHGFLKFCNAKKPSCFFPIPQAADCILRVIERADAPIIYLSTDAAESETGLLQSLIVLNGKSVPLVIRPARNSAEKWDALLYRHHIEGDSQVEAMLDKTICAMSSVFIGAPGSTFTEDILRLRKDWGSASLCDEYLCQGEEPNIVAENE*