Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544760 | XP_013455698.1 | 96.419 | 391 | 14 | 0 | 1 | 391 | 1 | 391 | 0.0 | 782 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544760 | sp|Q8VWF6|SSL3_ARATH | 71.503 | 386 | 107 | 2 | 7 | 391 | 6 | 389 | 0.0 | 589 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544760 | A0A072UIZ0 | 96.419 | 391 | 14 | 0 | 1 | 391 | 1 | 391 | 0.0 | 782 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0544760 | Msa0679250 | 0.990369 | 2.632188e-182 | -8.615850e-47 |
| Msa0544760 | Msa1421700 | 0.819191 | 1.321872e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544760 | MtrunA17_Chr4g0025341 | 96.419 | 391 | 14 | 0 | 1 | 391 | 1 | 391 | 0.0 | 782 |
| Msa0544760 | MtrunA17_Chr2g0322241 | 78.316 | 392 | 84 | 1 | 1 | 391 | 4 | 395 | 0.0 | 645 |
| Msa0544760 | MtrunA17_Chr7g0256581 | 51.765 | 340 | 153 | 5 | 55 | 391 | 38 | 369 | 1.14e-117 | 346 |
| Msa0544760 | MtrunA17_Chr7g0256571 | 50.733 | 341 | 155 | 6 | 55 | 391 | 38 | 369 | 2.77e-115 | 340 |
| Msa0544760 | MtrunA17_Chr7g0256561 | 48.974 | 341 | 124 | 6 | 54 | 391 | 42 | 335 | 1.45e-103 | 309 |
| Msa0544760 | MtrunA17_Chr2g0329531 | 42.711 | 391 | 214 | 6 | 5 | 388 | 16 | 403 | 2.87e-101 | 306 |
| Msa0544760 | MtrunA17_Chr5g0443561 | 48.225 | 338 | 123 | 6 | 57 | 391 | 35 | 323 | 1.40e-98 | 296 |
| Msa0544760 | MtrunA17_Chr7g0256591 | 44.277 | 332 | 176 | 7 | 66 | 389 | 54 | 384 | 8.76e-94 | 286 |
| Msa0544760 | MtrunA17_Chr7g0256601 | 43.598 | 328 | 177 | 7 | 70 | 389 | 88 | 415 | 3.78e-90 | 278 |
| Msa0544760 | MtrunA17_Chr4g0062001 | 38.484 | 343 | 171 | 10 | 58 | 389 | 21 | 334 | 3.31e-73 | 231 |
| Msa0544760 | MtrunA17_Chr8g0376581 | 38.348 | 339 | 172 | 9 | 56 | 389 | 24 | 330 | 2.27e-71 | 226 |
| Msa0544760 | MtrunA17_Chr4g0062021 | 38.643 | 339 | 164 | 11 | 64 | 389 | 39 | 346 | 6.09e-65 | 211 |
| Msa0544760 | MtrunA17_Chr4g0062031 | 37.576 | 330 | 157 | 7 | 68 | 389 | 36 | 324 | 4.70e-64 | 207 |
| Msa0544760 | MtrunA17_Chr2g0307721 | 38.318 | 321 | 161 | 7 | 68 | 382 | 45 | 334 | 1.77e-59 | 206 |
| Msa0544760 | MtrunA17_Chr2g0307721 | 36.280 | 328 | 172 | 7 | 67 | 388 | 496 | 792 | 6.31e-56 | 196 |
| Msa0544760 | MtrunA17_Chr2g0307721 | 50.000 | 82 | 40 | 1 | 123 | 203 | 340 | 421 | 1.44e-14 | 75.5 |
| Msa0544760 | MtrunA17_Chr8g0370761 | 32.190 | 379 | 211 | 10 | 10 | 386 | 27 | 361 | 7.12e-48 | 167 |
| Msa0544760 | MtrunA17_Chr8g0370791 | 31.565 | 377 | 216 | 9 | 10 | 386 | 27 | 361 | 5.66e-45 | 159 |
| Msa0544760 | MtrunA17_Chr2g0300841 | 31.298 | 262 | 152 | 5 | 142 | 391 | 112 | 357 | 1.69e-36 | 136 |
| Msa0544760 | MtrunA17_Chr8g0370771 | 33.333 | 234 | 146 | 4 | 154 | 387 | 4 | 227 | 4.03e-35 | 129 |
| Msa0544760 | MtrunA17_Chr4g0020271 | 33.981 | 206 | 111 | 3 | 179 | 383 | 2 | 183 | 1.04e-33 | 124 |
| Msa0544760 | MtrunA17_Chr2g0300851 | 29.348 | 276 | 166 | 5 | 128 | 391 | 91 | 349 | 1.21e-33 | 128 |
| Msa0544760 | MtrunA17_Chr2g0300861 | 30.800 | 250 | 160 | 5 | 142 | 387 | 124 | 364 | 1.88e-32 | 125 |
| Msa0544760 | MtrunA17_Chr4g0062051 | 42.553 | 141 | 71 | 4 | 68 | 203 | 40 | 175 | 7.90e-26 | 102 |
| Msa0544760 | MtrunA17_Chr4g0061871 | 44.330 | 97 | 54 | 0 | 203 | 299 | 18 | 114 | 4.58e-24 | 96.3 |
| Msa0544760 | MtrunA17_Chr8g0370801 | 37.037 | 108 | 65 | 1 | 153 | 257 | 2 | 109 | 7.12e-20 | 84.3 |
| Msa0544760 | MtrunA17_Chr4g0062061 | 27.027 | 148 | 76 | 1 | 242 | 389 | 4 | 119 | 2.42e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544760 | AT1G08470.1 | 71.503 | 386 | 107 | 2 | 7 | 391 | 6 | 389 | 0.0 | 589 |
| Msa0544760 | AT5G22020.3 | 68.085 | 376 | 117 | 2 | 17 | 391 | 22 | 395 | 0.0 | 550 |
| Msa0544760 | AT5G22020.1 | 68.085 | 376 | 117 | 2 | 17 | 391 | 22 | 395 | 0.0 | 550 |
| Msa0544760 | AT5G22020.2 | 68.085 | 376 | 117 | 2 | 17 | 391 | 22 | 395 | 0.0 | 550 |
| Msa0544760 | AT3G57030.1 | 50.720 | 347 | 162 | 4 | 48 | 391 | 34 | 374 | 1.50e-121 | 357 |
| Msa0544760 | AT3G59530.3 | 43.434 | 396 | 202 | 7 | 1 | 388 | 13 | 394 | 1.69e-103 | 312 |
| Msa0544760 | AT3G59530.2 | 43.434 | 396 | 202 | 7 | 1 | 388 | 13 | 394 | 1.69e-103 | 312 |
| Msa0544760 | AT3G59530.1 | 43.434 | 396 | 202 | 7 | 1 | 388 | 13 | 394 | 1.69e-103 | 312 |
| Msa0544760 | AT3G57010.1 | 47.853 | 326 | 155 | 6 | 68 | 388 | 52 | 367 | 2.64e-99 | 300 |
| Msa0544760 | AT3G57020.1 | 48.182 | 330 | 148 | 8 | 68 | 388 | 51 | 366 | 4.93e-95 | 289 |
| Msa0544760 | AT2G41300.1 | 45.426 | 317 | 159 | 5 | 76 | 388 | 84 | 390 | 1.23e-91 | 281 |
| Msa0544760 | AT3G57020.2 | 46.341 | 328 | 143 | 7 | 68 | 388 | 51 | 352 | 5.69e-89 | 273 |
| Msa0544760 | AT2G41290.1 | 42.061 | 359 | 189 | 9 | 46 | 391 | 24 | 376 | 9.62e-87 | 268 |
| Msa0544760 | AT1G74000.1 | 37.994 | 329 | 158 | 10 | 70 | 391 | 40 | 329 | 5.86e-54 | 182 |
| Msa0544760 | AT1G74010.1 | 38.739 | 333 | 157 | 11 | 66 | 391 | 33 | 325 | 1.02e-53 | 181 |
| Msa0544760 | AT1G74020.1 | 35.455 | 330 | 167 | 9 | 69 | 391 | 37 | 327 | 4.75e-51 | 174 |
| Msa0544760 | AT3G51440.1 | 32.955 | 264 | 152 | 5 | 56 | 317 | 55 | 295 | 1.04e-34 | 132 |
| Msa0544760 | AT3G51420.1 | 29.254 | 335 | 202 | 9 | 56 | 387 | 55 | 357 | 5.72e-34 | 130 |
| Msa0544760 | AT3G51430.1 | 30.476 | 315 | 183 | 10 | 7 | 317 | 13 | 295 | 4.64e-33 | 127 |
| Msa0544760 | AT3G51450.1 | 29.114 | 316 | 195 | 8 | 2 | 317 | 9 | 295 | 3.56e-32 | 125 |
| Msa0544760 | AT3G51430.2 | 30.476 | 315 | 181 | 11 | 7 | 317 | 13 | 293 | 7.36e-32 | 124 |
Find 113 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACGTAAATATTGGTTAAA+AGG | 0.214137 | 4_1:-33670032 | Msa0544760:CDS |
| TGTTCTGGAATGGACTTTCT+TGG | 0.232101 | 4_1:-33672724 | Msa0544760:CDS |
| CCCTGAATTTGAATCCAAAA+AGG | 0.232481 | 4_1:-33672909 | Msa0544760:CDS |
| TATTTACTCTTATTCTTTGT+TGG | 0.235592 | 4_1:+33669452 | None:intergenic |
| TTATGTTCATCTCTGTCTTT+AGG | 0.242130 | 4_1:+33672860 | None:intergenic |
| AGTTTATAAACTGCAATAAA+AGG | 0.276571 | 4_1:+33669660 | None:intergenic |
| TACATTGCAGATGCATATCT+TGG | 0.310576 | 4_1:-33671174 | Msa0544760:CDS |
| AATAATGTACCTTGAGTTCT+TGG | 0.332639 | 4_1:-33669570 | Msa0544760:three_prime_UTR |
| TGTGTAGATTACGTAAATAT+TGG | 0.346326 | 4_1:-33670040 | Msa0544760:intron |
| CTTGGTCGTGGACCTTATAC+TGG | 0.347823 | 4_1:-33672767 | Msa0544760:CDS |
| TTGCTTAAGGAAATGCCATT+TGG | 0.348960 | 4_1:+33670522 | None:intergenic |
| CATATCTGTGGAAGGCCTTT+GGG | 0.349781 | 4_1:-33671228 | Msa0544760:CDS |
| ACATATCTGTGGAAGGCCTT+TGG | 0.349805 | 4_1:-33671229 | Msa0544760:CDS |
| TCAGTCTTCACATAACTAAA+TGG | 0.356858 | 4_1:+33671252 | None:intergenic |
| GAAGGAACCATCTTTGCTTA+AGG | 0.369652 | 4_1:+33670509 | None:intergenic |
| GCTATAGTGCTATGCTGAAA+TGG | 0.373241 | 4_1:+33672938 | None:intergenic |
| GTTCTGGAATGGACTTTCTT+GGG | 0.382508 | 4_1:-33672723 | Msa0544760:CDS |
| GTTTGCTCTATACTGTGGTT+TGG | 0.385134 | 4_1:-33672963 | Msa0544760:CDS |
| TGCTTAAGGAAATGCCATTT+GGG | 0.387701 | 4_1:+33670523 | None:intergenic |
| AGCAAACAAGAGAAAGATAA+TGG | 0.392575 | 4_1:+33672979 | None:intergenic |
| ATCTGCAGTAATTTACCTTC+AGG | 0.399510 | 4_1:+33669771 | None:intergenic |
| GGCATTTCCTTAAGCAAAGA+TGG | 0.401090 | 4_1:-33670516 | Msa0544760:CDS |
| AGTATAGCTTTCCTTATCCT+TGG | 0.402497 | 4_1:+33669873 | None:intergenic |
| GCTTACCTCCGATTTGAAAC+AGG | 0.409854 | 4_1:+33669820 | None:intergenic |
| GAATGAATAACGTGTTTGTT+AGG | 0.415511 | 4_1:+33673113 | None:intergenic |
| AGGTAAATTACTGCAGATAT+TGG | 0.424873 | 4_1:-33669766 | Msa0544760:CDS |
| GTTAGGTTTCAATTGAATAG+TGG | 0.426954 | 4_1:+33673130 | None:intergenic |
| ACATCGTTGGTAAATCTTAG+AGG | 0.430160 | 4_1:+33671087 | None:intergenic |
| TCATTCACCCTCACATTGTC+GGG | 0.430646 | 4_1:+33669963 | None:intergenic |
| CCATCAGCAACACCAGTATA+AGG | 0.434274 | 4_1:+33672755 | None:intergenic |
| AAAAGGTTGACATGCCTGAT+TGG | 0.446198 | 4_1:-33672892 | Msa0544760:CDS |
| CTGGTTTATATCCAAGGATA+AGG | 0.446658 | 4_1:-33669884 | Msa0544760:CDS |
| CTAAGATTTGACAAGAAAAC+AGG | 0.452434 | 4_1:-33671204 | Msa0544760:CDS |
| TTCATTCACCCTCACATTGT+CGG | 0.455467 | 4_1:+33669962 | None:intergenic |
| TTGCTTACACTTCGCCCAAC+AGG | 0.463778 | 4_1:-33672694 | Msa0544760:intron |
| TTTGTGAAGGGTCTATTGGC+AGG | 0.466385 | 4_1:-33670479 | Msa0544760:intron |
| AAAGATGGTCAACTTTGGAT+TGG | 0.469113 | 4_1:-33669696 | Msa0544760:CDS |
| AACAGGTATTGATTCTTTGT+CGG | 0.469355 | 4_1:+33669837 | None:intergenic |
| AATCAATACCTGTTTCAAAT+CGG | 0.471637 | 4_1:-33669828 | Msa0544760:CDS |
| CTCACATTGTCGGGAGCTCC+AGG | 0.471745 | 4_1:+33669972 | None:intergenic |
| CTGTTGAAGGTGGGGCCCGA+GGG | 0.473423 | 4_1:-33671150 | Msa0544760:CDS |
| AGCATTGTGTTTGACCCTCT+TGG | 0.482152 | 4_1:-33672785 | Msa0544760:CDS |
| AAGAGAAAGATGGTCAACTT+TGG | 0.483380 | 4_1:-33669701 | Msa0544760:CDS |
| TATTGATTCTTTGTCGGTAT+CGG | 0.484071 | 4_1:+33669843 | None:intergenic |
| GCTGTTGAAGGTGGGGCCCG+AGG | 0.486767 | 4_1:-33671151 | Msa0544760:CDS |
| TTGAAGGTGGGGCCCGAGGG+AGG | 0.489783 | 4_1:-33671147 | Msa0544760:CDS |
| TATCTTGGGCTGTTGAAGGT+GGG | 0.490836 | 4_1:-33671159 | Msa0544760:CDS |
| ATCTTGGGCTGTTGAAGGTG+GGG | 0.493839 | 4_1:-33671158 | Msa0544760:CDS |
| ATGGAAGCAAAGCTCATCTC+AGG | 0.494668 | 4_1:+33669535 | None:intergenic |
| ATATTTATTTCTCAATGTAA+AGG | 0.497698 | 4_1:+33673190 | None:intergenic |
| AGATGTTGCTAAACCTCCCT+CGG | 0.499939 | 4_1:+33671134 | None:intergenic |
| GTGTTTGACCCTCTTGGTCG+TGG | 0.500600 | 4_1:-33672779 | Msa0544760:CDS |
| GTACAGGAATTTCATGCAGC+TGG | 0.501498 | 4_1:-33670631 | Msa0544760:intron |
| ATATTGGTTAAAAGGAGAAA+AGG | 0.502297 | 4_1:-33670024 | Msa0544760:CDS |
| CTATAGTGCTATGCTGAAAT+GGG | 0.502739 | 4_1:+33672939 | None:intergenic |
| TTAGGTTTCAATTGAATAGT+GGG | 0.504081 | 4_1:+33673131 | None:intergenic |
| CTCTTGCAACTGAGGCTGAA+GGG | 0.504563 | 4_1:-33671113 | Msa0544760:CDS |
| TTAGGAACCTCAGACCAATC+AGG | 0.508111 | 4_1:+33672878 | None:intergenic |
| TGCATATCTTGGGCTGTTGA+AGG | 0.508916 | 4_1:-33671163 | Msa0544760:CDS |
| GGGTCAAACACAATGCTCTC+AGG | 0.511757 | 4_1:+33672791 | None:intergenic |
| TGGTTAAAAGGAGAAAAGGC+TGG | 0.512231 | 4_1:-33670020 | Msa0544760:CDS |
| AAATGGTGTTGCATTTGCTA+TGG | 0.513816 | 4_1:+33671269 | None:intergenic |
| AGGTTGAAATGCGAATGTTA+TGG | 0.518887 | 4_1:+33673036 | None:intergenic |
| AGGAGAAAAGGCTGGGACAT+CGG | 0.522741 | 4_1:-33670012 | Msa0544760:CDS |
| TGTTAGAGCTGTGAGTGAAG+TGG | 0.524832 | 4_1:-33669724 | Msa0544760:CDS |
| ACATTGCAGATGCATATCTT+GGG | 0.529752 | 4_1:-33671173 | Msa0544760:CDS |
| TTGATCTTCAGCTCTATCAC+AGG | 0.531244 | 4_1:-33669616 | Msa0544760:three_prime_UTR |
| ATATCTTGGGCTGTTGAAGG+TGG | 0.531295 | 4_1:-33671160 | Msa0544760:CDS |
| CTCTTGTTTGCTCTATACTG+TGG | 0.532134 | 4_1:-33672968 | Msa0544760:CDS |
| CCTTATACTGGTGTTGCTGA+TGG | 0.535929 | 4_1:-33672755 | Msa0544760:CDS |
| TTGTCAAATCTTAGTCCCAA+AGG | 0.536364 | 4_1:+33671213 | None:intergenic |
| AATGTACCTTGAGTTCTTGG+TGG | 0.542542 | 4_1:-33669567 | Msa0544760:three_prime_UTR |
| AATGGTGTTGCATTTGCTAT+GGG | 0.543525 | 4_1:+33671270 | None:intergenic |
| AGGAATGTTCAATTCCCAAA+TGG | 0.546952 | 4_1:-33670537 | Msa0544760:CDS |
| AACCTTTCCACTATCATCCC+CGG | 0.549832 | 4_1:+33670602 | None:intergenic |
| TGTGATGCCACCTACCTGTT+GGG | 0.550686 | 4_1:+33672680 | None:intergenic |
| ACTATACTGGTTTATATCCA+AGG | 0.552390 | 4_1:-33669890 | Msa0544760:CDS |
| GTTTCAATTGAATAGTGGGT+AGG | 0.555087 | 4_1:+33673135 | None:intergenic |
| AACATTCCTCACTAGAACAG+TGG | 0.558934 | 4_1:+33670551 | None:intergenic |
| TTTATTCCACCAAGAACTCA+AGG | 0.564758 | 4_1:+33669561 | None:intergenic |
| TTCCGGGGATGATAGTGGAA+AGG | 0.565527 | 4_1:-33670604 | Msa0544760:CDS |
| GATGTTGCTAAACCTCCCTC+GGG | 0.566662 | 4_1:+33671135 | None:intergenic |
| TCTTGCAACTGAGGCTGAAG+GGG | 0.566753 | 4_1:-33671112 | Msa0544760:CDS |
| TAAATTACTGCAGATATTGG+AGG | 0.568473 | 4_1:-33669763 | Msa0544760:CDS |
| AGCAACATCTCTTGCAACTG+AGG | 0.569286 | 4_1:-33671121 | Msa0544760:CDS |
| TCTCTTGCAACTGAGGCTGA+AGG | 0.569638 | 4_1:-33671114 | Msa0544760:CDS |
| GAGATCTTAGCTATCCTACC+TGG | 0.569639 | 4_1:-33669990 | Msa0544760:CDS |
| CAAGAGAAAGATAATGGCAA+AGG | 0.575699 | 4_1:+33672985 | None:intergenic |
| AGAGACATGATGTTATTGAA+AGG | 0.575842 | 4_1:+33673016 | None:intergenic |
| GGTTAAAAGGAGAAAAGGCT+GGG | 0.576153 | 4_1:-33670019 | Msa0544760:CDS |
| TGAATCAACATCGACATCGT+TGG | 0.579014 | 4_1:+33671074 | None:intergenic |
| GTGATAGAGCTGAAGATCAA+AGG | 0.580671 | 4_1:+33669619 | None:intergenic |
| CTGGAGCTCCCGACAATGTG+AGG | 0.585247 | 4_1:-33669971 | Msa0544760:CDS |
| CAATACCTGTTTCAAATCGG+AGG | 0.600119 | 4_1:-33669825 | Msa0544760:CDS |
| GCAGTTCTATTTATCAGAGG+AGG | 0.604762 | 4_1:-33671026 | Msa0544760:intron |
| AATTGAATAGTGGGTAGGTG+AGG | 0.607127 | 4_1:+33673140 | None:intergenic |
| CAAATCGGAGGTAAGCAACA+TGG | 0.612312 | 4_1:-33669813 | Msa0544760:CDS |
| AAAGCAGTTCTATTTATCAG+AGG | 0.613913 | 4_1:-33671029 | Msa0544760:CDS |
| TGGAGCTCCCGACAATGTGA+GGG | 0.616670 | 4_1:-33669970 | Msa0544760:CDS |
| TGACATGCCTGATTGGTCTG+AGG | 0.623043 | 4_1:-33672885 | Msa0544760:CDS |
| AGTGAAGTGGAAGAGAAAGA+TGG | 0.626890 | 4_1:-33669711 | Msa0544760:CDS |
| GATGTCGATGTTGATTCAGA+AGG | 0.627197 | 4_1:-33671069 | Msa0544760:CDS |
| CAGATATTGGAGGACAGTGA+GGG | 0.630580 | 4_1:-33669753 | Msa0544760:CDS |
| GCAGATATTGGAGGACAGTG+AGG | 0.631429 | 4_1:-33669754 | Msa0544760:CDS |
| AATGTGAGGGTGAATGAAGA+TGG | 0.632486 | 4_1:-33669957 | Msa0544760:CDS |
| AGACTGAACATATCTGTGGA+AGG | 0.642076 | 4_1:-33671236 | Msa0544760:CDS |
| GAGGTAGCAAGCAACGTGTG+TGG | 0.645184 | 4_1:+33673159 | None:intergenic |
| AGAAAACCACTGTTCTAGTG+AGG | 0.645940 | 4_1:-33670557 | Msa0544760:CDS |
| CATTGTCGGGAGCTCCAGGT+AGG | 0.648945 | 4_1:+33669976 | None:intergenic |
| ATTGTGAAGTATAGTCCTGA+AGG | 0.659981 | 4_1:-33669786 | Msa0544760:CDS |
| GTATAAGGTCCACGACCAAG+AGG | 0.671165 | 4_1:+33672770 | None:intergenic |
| TATAAGGTCCACGACCAAGA+GGG | 0.672876 | 4_1:+33672771 | None:intergenic |
| GTGAAGACTGAACATATCTG+TGG | 0.676259 | 4_1:-33671240 | Msa0544760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAGATTATTTTATTTTTTT+TGG | - | chr4_1:33670087-33670106 | Msa0544760:intron | 10.0% |
| !!! | TTTTATTTTTTTTGGAAATT+TGG | - | chr4_1:33670095-33670114 | Msa0544760:intron | 10.0% |
| !!! | ATTTTTTAAAAGATTCATTT+TGG | + | chr4_1:33671216-33671235 | None:intergenic | 10.0% |
| !!! | ATATTTATTTCTCAATGTAA+AGG | + | chr4_1:33669472-33669491 | None:intergenic | 15.0% |
| !!! | TAAAAATTGTAGTATTTTGT+AGG | - | chr4_1:33670036-33670055 | Msa0544760:CDS | 15.0% |
| !! | TCAAATAATTCAATCTAAAT+AGG | - | chr4_1:33670728-33670747 | Msa0544760:intron | 15.0% |
| !! | TTTAATGAATATTCTAACTT+AGG | + | chr4_1:33670858-33670877 | None:intergenic | 15.0% |
| !! | ATTAATTGAGTAAAAGATAA+AGG | - | chr4_1:33671247-33671266 | Msa0544760:CDS | 15.0% |
| !! | TTAATTGAGTAAAAGATAAA+GGG | - | chr4_1:33671248-33671267 | Msa0544760:CDS | 15.0% |
| !! | AAGAAATTATTGAAATGAAA+AGG | + | chr4_1:33672597-33672616 | None:intergenic | 15.0% |
| !!! | GAATGTTATGGTTTTAAAAA+TGG | + | chr4_1:33669614-33669633 | None:intergenic | 20.0% |
| !!! | AGGTAAAATTTAGTATGTTT+TGG | - | chr4_1:33670056-33670075 | Msa0544760:intron | 20.0% |
| !!! | AAAGCATTTATCATAACTTA+TGG | + | chr4_1:33670430-33670449 | None:intergenic | 20.0% |
| !! | CAATAACAAAGTATAAACTA+TGG | + | chr4_1:33670755-33670774 | None:intergenic | 20.0% |
| !!! | CATAGTTTATACTTTGTTAT+TGG | - | chr4_1:33670753-33670772 | Msa0544760:intron | 20.0% |
| !!! | TGTGTCATTTAAAAGTAAAA+AGG | - | chr4_1:33670777-33670796 | Msa0544760:intron | 20.0% |
| !! | AAAAATCTCTAATTTCAGTT+AGG | + | chr4_1:33671040-33671059 | None:intergenic | 20.0% |
| !! | TCTATATCTATTTGAAAAAC+AGG | - | chr4_1:33671354-33671373 | Msa0544760:intron | 20.0% |
| !!! | AGAAGGAAATGTATATTTTA+CGG | - | chr4_1:33671607-33671626 | Msa0544760:intron | 20.0% |
| !!! | AGTTTCTTATTTTTGAAACT+TGG | - | chr4_1:33672305-33672324 | Msa0544760:intron | 20.0% |
| !!! | TTACGTAAATATTGGTTAAA+AGG | - | chr4_1:33672627-33672646 | Msa0544760:intron | 20.0% |
| !! | AGTTTATAAACTGCAATAAA+AGG | + | chr4_1:33673002-33673021 | None:intergenic | 20.0% |
| !! | AATAACCAAAAAAGACAATA+TGG | + | chr4_1:33673146-33673165 | None:intergenic | 20.0% |
| ! | TTAGGTTTCAATTGAATAGT+GGG | + | chr4_1:33669531-33669550 | None:intergenic | 25.0% |
| ! | TAGAGTATATAGGTTCTATT+CGG | + | chr4_1:33670478-33670497 | None:intergenic | 25.0% |
| ! | ATAGAACCTATATACTCTAT+AGG | - | chr4_1:33670479-33670498 | Msa0544760:intron | 25.0% |
| !!! | AGTTGAGTTGAATTTTATTG+AGG | - | chr4_1:33670806-33670825 | Msa0544760:intron | 25.0% |
| !!! | GTTGAGTTGAATTTTATTGA+GGG | - | chr4_1:33670807-33670826 | Msa0544760:intron | 25.0% |
| !!! | GGATCTAGTTATATTTTAAC+TGG | + | chr4_1:33670837-33670856 | None:intergenic | 25.0% |
| ! | CAATAAAGACAATTTAACGA+AGG | - | chr4_1:33671148-33671167 | Msa0544760:CDS | 25.0% |
| ! | AATTTAACGAAGGTAGTAAA+TGG | - | chr4_1:33671158-33671177 | Msa0544760:CDS | 25.0% |
| !! | TTTTGCTAAAGCTTAGAAAT+GGG | + | chr4_1:33671292-33671311 | None:intergenic | 25.0% |
| ! | GAATAATCATAACCTTAAGA+TGG | - | chr4_1:33671781-33671800 | Msa0544760:intron | 25.0% |
| !! | AGCAGATAAAATTTTCAAAC+AGG | + | chr4_1:33672380-33672399 | None:intergenic | 25.0% |
| ! | AACATTAAGCTTAGTTTATC+AGG | + | chr4_1:33672480-33672499 | None:intergenic | 25.0% |
| ! | AATTAGTAAAGTGACACTTA+AGG | + | chr4_1:33672570-33672589 | None:intergenic | 25.0% |
| ! | TGTGTAGATTACGTAAATAT+TGG | - | chr4_1:33672619-33672638 | Msa0544760:intron | 25.0% |
| !! | ATATTGGTTAAAAGGAGAAA+AGG | - | chr4_1:33672635-33672654 | Msa0544760:intron | 25.0% |
| !! | TCTATGTTTTCATACTATAC+TGG | - | chr4_1:33672756-33672775 | Msa0544760:CDS | 25.0% |
| ! | AATCAATACCTGTTTCAAAT+CGG | - | chr4_1:33672831-33672850 | Msa0544760:CDS | 25.0% |
| GTTAGGTTTCAATTGAATAG+TGG | + | chr4_1:33669532-33669551 | None:intergenic | 30.0% | |
| GAATGAATAACGTGTTTGTT+AGG | + | chr4_1:33669549-33669568 | None:intergenic | 30.0% | |
| AGAGACATGATGTTATTGAA+AGG | + | chr4_1:33669646-33669665 | None:intergenic | 30.0% | |
| AGCAAACAAGAGAAAGATAA+TGG | + | chr4_1:33669683-33669702 | None:intergenic | 30.0% | |
| ! | CCTTTTTGGATTCAAATTCA+GGG | + | chr4_1:33669753-33669772 | None:intergenic | 30.0% |
| ! | ACCTTTTTGGATTCAAATTC+AGG | + | chr4_1:33669754-33669773 | None:intergenic | 30.0% |
| TTATGTTCATCTCTGTCTTT+AGG | + | chr4_1:33669802-33669821 | None:intergenic | 30.0% | |
| TGTTGCAAAAATCAGAGATA+AGG | - | chr4_1:33669824-33669843 | Msa0544760:CDS | 30.0% | |
| TTATTTAACAGTCCTGGTAA+TGG | + | chr4_1:33670008-33670027 | None:intergenic | 30.0% | |
| TAAGAACTTGAGTGTTATGA+CGG | - | chr4_1:33670244-33670263 | Msa0544760:intron | 30.0% | |
| ACTATGCCTATAGAGTATAT+AGG | + | chr4_1:33670488-33670507 | None:intergenic | 30.0% | |
| AACTGTTGAAAGACAATTCA+AGG | - | chr4_1:33670876-33670895 | Msa0544760:intron | 30.0% | |
| ACTGTTGAAAGACAATTCAA+GGG | - | chr4_1:33670877-33670896 | Msa0544760:intron | 30.0% | |
| TCGAGACATTTCATTATCTA+AGG | - | chr4_1:33670920-33670939 | Msa0544760:intron | 30.0% | |
| ACATTTCATTATCTAAGGAG+TGG | - | chr4_1:33670925-33670944 | Msa0544760:intron | 30.0% | |
| TTAGGATACAAGTTAGTGAT+CGG | + | chr4_1:33671022-33671041 | None:intergenic | 30.0% | |
| ! | CTTTTGCTAAAGCTTAGAAA+TGG | + | chr4_1:33671293-33671312 | None:intergenic | 30.0% |
| TCAGTCTTCACATAACTAAA+TGG | + | chr4_1:33671410-33671429 | None:intergenic | 30.0% | |
| CTAAGATTTGACAAGAAAAC+AGG | - | chr4_1:33671455-33671474 | Msa0544760:intron | 30.0% | |
| AAAGCAGTTCTATTTATCAG+AGG | - | chr4_1:33671630-33671649 | Msa0544760:intron | 30.0% | |
| !! | CAAATTAAGTTGAAGTTCCT+TGG | - | chr4_1:33671734-33671753 | Msa0544760:intron | 30.0% |
| TTGATGTGCAAGATGTATTA+AGG | - | chr4_1:33671841-33671860 | Msa0544760:intron | 30.0% | |
| ATTAAGGACAATGGTTTAAC+TGG | - | chr4_1:33671857-33671876 | Msa0544760:intron | 30.0% | |
| TTAAGGACAATGGTTTAACT+GGG | - | chr4_1:33671858-33671877 | Msa0544760:intron | 30.0% | |
| ! | TATGCGAAGAAAGTACATAT+AGG | + | chr4_1:33671904-33671923 | None:intergenic | 30.0% |
| CTGCAGAATTAAAAACTTCA+AGG | + | chr4_1:33671956-33671975 | None:intergenic | 30.0% | |
| AATTATGTCAGAAACAAGAC+AGG | + | chr4_1:33672005-33672024 | None:intergenic | 30.0% | |
| ! | TTCTGACATAATTTGTGTAC+AGG | - | chr4_1:33672012-33672031 | Msa0544760:intron | 30.0% |
| !!! | TCCTTCTTTGTTTTTTGTGA+AGG | - | chr4_1:33672167-33672186 | Msa0544760:intron | 30.0% |
| !!! | CCTTCTTTGTTTTTTGTGAA+GGG | - | chr4_1:33672168-33672187 | Msa0544760:intron | 30.0% |
| ! | AAGTGTTGTAATCAGTTTAG+TGG | - | chr4_1:33672527-33672546 | Msa0544760:intron | 30.0% |
| ! | TGAATGAAGATGGTGATTTT+TGG | - | chr4_1:33672712-33672731 | Msa0544760:CDS | 30.0% |
| ! | GAATGAAGATGGTGATTTTT+GGG | - | chr4_1:33672713-33672732 | Msa0544760:CDS | 30.0% |
| !! | ACTATACTGGTTTATATCCA+AGG | - | chr4_1:33672769-33672788 | Msa0544760:CDS | 30.0% |
| !! | TATTGATTCTTTGTCGGTAT+CGG | + | chr4_1:33672819-33672838 | None:intergenic | 30.0% |
| !! | AACAGGTATTGATTCTTTGT+CGG | + | chr4_1:33672825-33672844 | None:intergenic | 30.0% |
| AGGTAAATTACTGCAGATAT+TGG | - | chr4_1:33672893-33672912 | Msa0544760:CDS | 30.0% | |
| TAAATTACTGCAGATATTGG+AGG | - | chr4_1:33672896-33672915 | Msa0544760:CDS | 30.0% | |
| AATAATGTACCTTGAGTTCT+TGG | - | chr4_1:33673089-33673108 | Msa0544760:five_prime_UTR | 30.0% | |
| !!! | TGCTTCCATATTGTCTTTTT+TGG | - | chr4_1:33673138-33673157 | Msa0544760:five_prime_UTR | 30.0% |
| !! | GTTTCAATTGAATAGTGGGT+AGG | + | chr4_1:33669527-33669546 | None:intergenic | 35.0% |
| AGGTTGAAATGCGAATGTTA+TGG | + | chr4_1:33669626-33669645 | None:intergenic | 35.0% | |
| ! | CAAGAGAAAGATAATGGCAA+AGG | + | chr4_1:33669677-33669696 | None:intergenic | 35.0% |
| CTATAGTGCTATGCTGAAAT+GGG | + | chr4_1:33669723-33669742 | None:intergenic | 35.0% | |
| CCCTGAATTTGAATCCAAAA+AGG | - | chr4_1:33669750-33669769 | Msa0544760:CDS | 35.0% | |
| ! | AGGTTTTTGAATCAAGTGCA+AGG | - | chr4_1:33669844-33669863 | Msa0544760:CDS | 35.0% |
| ! | CTGATGGTAGAATTTTGTTC+TGG | - | chr4_1:33669920-33669939 | Msa0544760:CDS | 35.0% |
| !!! | GGTAGAATTTTGTTCTGGAA+TGG | - | chr4_1:33669925-33669944 | Msa0544760:CDS | 35.0% |
| AACACGTTATTTAACAGTCC+TGG | + | chr4_1:33670014-33670033 | None:intergenic | 35.0% | |
| AAGAACTTGAGTGTTATGAC+GGG | - | chr4_1:33670245-33670264 | Msa0544760:intron | 35.0% | |
| GACATGTTCATAAGCTTTCT+AGG | - | chr4_1:33670352-33670371 | Msa0544760:intron | 35.0% | |
| AAGAACTTACGAGACTGTTT+GGG | + | chr4_1:33670692-33670711 | None:intergenic | 35.0% | |
| TAAGAACTTACGAGACTGTT+TGG | + | chr4_1:33670693-33670712 | None:intergenic | 35.0% | |
| TCATTATCTAAGGAGTGGTT+TGG | - | chr4_1:33670930-33670949 | Msa0544760:intron | 35.0% | |
| CATTATCTAAGGAGTGGTTT+GGG | - | chr4_1:33670931-33670950 | Msa0544760:intron | 35.0% | |
| ATTATCTAAGGAGTGGTTTG+GGG | - | chr4_1:33670932-33670951 | Msa0544760:intron | 35.0% | |
| CGGTTGTTAGAAATTGTTAG+TGG | + | chr4_1:33671002-33671021 | None:intergenic | 35.0% | |
| !! | AATGGTGTTGCATTTGCTAT+GGG | + | chr4_1:33671392-33671411 | None:intergenic | 35.0% |
| !! | AAATGGTGTTGCATTTGCTA+TGG | + | chr4_1:33671393-33671412 | None:intergenic | 35.0% |
| TTGTCAAATCTTAGTCCCAA+AGG | + | chr4_1:33671449-33671468 | None:intergenic | 35.0% | |
| TACATTGCAGATGCATATCT+TGG | - | chr4_1:33671485-33671504 | Msa0544760:intron | 35.0% | |
| ACATTGCAGATGCATATCTT+GGG | - | chr4_1:33671486-33671505 | Msa0544760:intron | 35.0% | |
| ! | ACATCGTTGGTAAATCTTAG+AGG | + | chr4_1:33671575-33671594 | None:intergenic | 35.0% |
| GCAAGATGTATTAAGGACAA+TGG | - | chr4_1:33671848-33671867 | Msa0544760:intron | 35.0% | |
| ! | CTGGGATGATTATTGAGTTT+TGG | - | chr4_1:33671876-33671895 | Msa0544760:intron | 35.0% |
| ! | CAGTGGTTTTCTTTGTTGAA+GGG | + | chr4_1:33672094-33672113 | None:intergenic | 35.0% |
| ! | ACAGTGGTTTTCTTTGTTGA+AGG | + | chr4_1:33672095-33672114 | None:intergenic | 35.0% |
| AGGAATGTTCAATTCCCAAA+TGG | - | chr4_1:33672122-33672141 | Msa0544760:intron | 35.0% | |
| ! | TGCTTAAGGAAATGCCATTT+GGG | + | chr4_1:33672139-33672158 | None:intergenic | 35.0% |
| TTGCTTAAGGAAATGCCATT+TGG | + | chr4_1:33672140-33672159 | None:intergenic | 35.0% | |
| CCCTTCACAAAAAACAAAGA+AGG | + | chr4_1:33672171-33672190 | None:intergenic | 35.0% | |
| !!! | GTTTTTTGTGAAGGGTCTAT+TGG | - | chr4_1:33672176-33672195 | Msa0544760:intron | 35.0% |
| AGCTAAAGAGGTAAGGTTAA+AGG | + | chr4_1:33672214-33672233 | None:intergenic | 35.0% | |
| AAAAAGACAGCTAGCTAAAG+AGG | + | chr4_1:33672226-33672245 | None:intergenic | 35.0% | |
| AAACTGATTACAACACTTCG+TGG | + | chr4_1:33672525-33672544 | None:intergenic | 35.0% | |
| TAAAGTGACACTTAAGGCTA+CGG | + | chr4_1:33672564-33672583 | None:intergenic | 35.0% | |
| CTGGTTTATATCCAAGGATA+AGG | - | chr4_1:33672775-33672794 | Msa0544760:CDS | 35.0% | |
| AGTATAGCTTTCCTTATCCT+TGG | + | chr4_1:33672789-33672808 | None:intergenic | 35.0% | |
| ATTGTGAAGTATAGTCCTGA+AGG | - | chr4_1:33672873-33672892 | Msa0544760:CDS | 35.0% | |
| ATCTGCAGTAATTTACCTTC+AGG | + | chr4_1:33672891-33672910 | None:intergenic | 35.0% | |
| AAGAGAAAGATGGTCAACTT+TGG | - | chr4_1:33672958-33672977 | Msa0544760:CDS | 35.0% | |
| AAAGATGGTCAACTTTGGAT+TGG | - | chr4_1:33672963-33672982 | Msa0544760:CDS | 35.0% | |
| TTTATTCCACCAAGAACTCA+AGG | + | chr4_1:33673101-33673120 | None:intergenic | 35.0% | |
| !! | AATTGAATAGTGGGTAGGTG+AGG | + | chr4_1:33669522-33669541 | None:intergenic | 40.0% |
| ! | CTCTTGTTTGCTCTATACTG+TGG | - | chr4_1:33669691-33669710 | Msa0544760:CDS | 40.0% |
| GTTTGCTCTATACTGTGGTT+TGG | - | chr4_1:33669696-33669715 | Msa0544760:CDS | 40.0% | |
| GCTATAGTGCTATGCTGAAA+TGG | + | chr4_1:33669724-33669743 | None:intergenic | 40.0% | |
| ! | ATCAGGCATGTCAACCTTTT+TGG | + | chr4_1:33669767-33669786 | None:intergenic | 40.0% |
| AAAAGGTTGACATGCCTGAT+TGG | - | chr4_1:33669767-33669786 | Msa0544760:CDS | 40.0% | |
| !! | TGTTCTGGAATGGACTTTCT+TGG | - | chr4_1:33669935-33669954 | Msa0544760:CDS | 40.0% |
| !! | GTTCTGGAATGGACTTTCTT+GGG | - | chr4_1:33669936-33669955 | Msa0544760:CDS | 40.0% |
| !! | CGGATTAGTCGATCATTGAT+CGG | + | chr4_1:33670124-33670143 | None:intergenic | 40.0% |
| CGATCAATGATCGACTAATC+CGG | - | chr4_1:33670122-33670141 | Msa0544760:intron | 40.0% | |
| GATCAATGATCGACTAATCC+GGG | - | chr4_1:33670123-33670142 | Msa0544760:intron | 40.0% | |
| ATCAATGATCGACTAATCCG+GGG | - | chr4_1:33670124-33670143 | Msa0544760:intron | 40.0% | |
| TTCAAACTTGAGACCTTGAG+AGG | - | chr4_1:33670169-33670188 | Msa0544760:intron | 40.0% | |
| ! | GTGTTGTAGGTTTGAAACCT+TGG | + | chr4_1:33670203-33670222 | None:intergenic | 40.0% |
| GGTTTCAAACCTACAACACT+AGG | - | chr4_1:33670204-33670223 | Msa0544760:intron | 40.0% | |
| ! | ATGAGTTGACCTAGTGTTGT+AGG | + | chr4_1:33670216-33670235 | None:intergenic | 40.0% |
| AACACTAGGTCAACTCATGT+GGG | - | chr4_1:33670218-33670237 | Msa0544760:intron | 40.0% | |
| GACTATTTCATAAGCTCTCC+AGG | + | chr4_1:33670635-33670654 | None:intergenic | 40.0% | |
| ! | TTATCTAAGGAGTGGTTTGG+GGG | - | chr4_1:33670933-33670952 | Msa0544760:intron | 40.0% |
| GTTAGTGGAGAGATTCAAAC+TGG | + | chr4_1:33670987-33671006 | None:intergenic | 40.0% | |
| TCCATGAAAGATCACTTACG+TGG | + | chr4_1:33671076-33671095 | None:intergenic | 40.0% | |
| !! | TGGACATTTTGACATGTCAC+AGG | - | chr4_1:33671092-33671111 | Msa0544760:CDS | 40.0% |
| GTGAAGACTGAACATATCTG+TGG | - | chr4_1:33671419-33671438 | Msa0544760:intron | 40.0% | |
| AGACTGAACATATCTGTGGA+AGG | - | chr4_1:33671423-33671442 | Msa0544760:intron | 40.0% | |
| TGAATCAACATCGACATCGT+TGG | + | chr4_1:33671588-33671607 | None:intergenic | 40.0% | |
| !! | GATGTCGATGTTGATTCAGA+AGG | - | chr4_1:33671590-33671609 | Msa0544760:intron | 40.0% |
| GCAGTTCTATTTATCAGAGG+AGG | - | chr4_1:33671633-33671652 | Msa0544760:intron | 40.0% | |
| AACGTGTGAGAACTGTATGA+AGG | - | chr4_1:33671758-33671777 | Msa0544760:intron | 40.0% | |
| ACGTGTGAGAACTGTATGAA+GGG | - | chr4_1:33671759-33671778 | Msa0544760:intron | 40.0% | |
| ACCTGCATATGTAAGTTTCG+TGG | - | chr4_1:33671810-33671829 | Msa0544760:intron | 40.0% | |
| TCCACGAAACTTACATATGC+AGG | + | chr4_1:33671814-33671833 | None:intergenic | 40.0% | |
| ! | TTCATGCAGCTGGTATTTTC+CGG | - | chr4_1:33672038-33672057 | Msa0544760:intron | 40.0% |
| AGAAAACCACTGTTCTAGTG+AGG | - | chr4_1:33672102-33672121 | Msa0544760:intron | 40.0% | |
| AACATTCCTCACTAGAACAG+TGG | + | chr4_1:33672111-33672130 | None:intergenic | 40.0% | |
| GGCATTTCCTTAAGCAAAGA+TGG | - | chr4_1:33672143-33672162 | Msa0544760:intron | 40.0% | |
| GAAGGAACCATCTTTGCTTA+AGG | + | chr4_1:33672153-33672172 | None:intergenic | 40.0% | |
| CCTCCTAGTTAGTACTCTTA+CGG | - | chr4_1:33672329-33672348 | Msa0544760:intron | 40.0% | |
| !! | ACACCGTAAGAGTACTAACT+AGG | + | chr4_1:33672335-33672354 | None:intergenic | 40.0% |
| TGGTTAAAAGGAGAAAAGGC+TGG | - | chr4_1:33672639-33672658 | Msa0544760:intron | 40.0% | |
| GGTTAAAAGGAGAAAAGGCT+GGG | - | chr4_1:33672640-33672659 | Msa0544760:intron | 40.0% | |
| TTCATTCACCCTCACATTGT+CGG | + | chr4_1:33672700-33672719 | None:intergenic | 40.0% | |
| AATGTGAGGGTGAATGAAGA+TGG | - | chr4_1:33672702-33672721 | Msa0544760:CDS | 40.0% | |
| !! | TGAAGATGGTGATTTTTGGG+TGG | - | chr4_1:33672716-33672735 | Msa0544760:CDS | 40.0% |
| CAATACCTGTTTCAAATCGG+AGG | - | chr4_1:33672834-33672853 | Msa0544760:CDS | 40.0% | |
| AGTGAAGTGGAAGAGAAAGA+TGG | - | chr4_1:33672948-33672967 | Msa0544760:CDS | 40.0% | |
| GTGATAGAGCTGAAGATCAA+AGG | + | chr4_1:33673043-33673062 | None:intergenic | 40.0% | |
| TTGATCTTCAGCTCTATCAC+AGG | - | chr4_1:33673043-33673062 | Msa0544760:five_prime_UTR | 40.0% | |
| AATGTACCTTGAGTTCTTGG+TGG | - | chr4_1:33673092-33673111 | Msa0544760:five_prime_UTR | 40.0% | |
| TTAGGAACCTCAGACCAATC+AGG | + | chr4_1:33669784-33669803 | None:intergenic | 45.0% | |
| AGCATTGTGTTTGACCCTCT+TGG | - | chr4_1:33669874-33669893 | Msa0544760:CDS | 45.0% | |
| TATAAGGTCCACGACCAAGA+GGG | + | chr4_1:33669891-33669910 | None:intergenic | 45.0% | |
| CCATCAGCAACACCAGTATA+AGG | + | chr4_1:33669907-33669926 | None:intergenic | 45.0% | |
| !! | CCTTATACTGGTGTTGCTGA+TGG | - | chr4_1:33669904-33669923 | Msa0544760:CDS | 45.0% |
| GGCATCACAATTCCATTACC+AGG | - | chr4_1:33669993-33670012 | Msa0544760:CDS | 45.0% | |
| TCAATGATCGACTAATCCGG+GGG | - | chr4_1:33670125-33670144 | Msa0544760:intron | 45.0% | |
| CAACACTAGGTCAACTCATG+TGG | - | chr4_1:33670217-33670236 | Msa0544760:intron | 45.0% | |
| ! | AGACTGTTTGGGAGAGCATA+TGG | + | chr4_1:33670681-33670700 | None:intergenic | 45.0% |
| AGAACATAGAGGTTGGACTG+AGG | - | chr4_1:33670957-33670976 | Msa0544760:intron | 45.0% | |
| GCCACGTAAGTGATCTTTCA+TGG | - | chr4_1:33671072-33671091 | Msa0544760:CDS | 45.0% | |
| TTGACATGTCACAGGCTAAG+TGG | - | chr4_1:33671100-33671119 | Msa0544760:CDS | 45.0% | |
| TGACATGTCACAGGCTAAGT+GGG | - | chr4_1:33671101-33671120 | Msa0544760:CDS | 45.0% | |
| ACATATCTGTGGAAGGCCTT+TGG | - | chr4_1:33671430-33671449 | Msa0544760:intron | 45.0% | |
| CATATCTGTGGAAGGCCTTT+GGG | - | chr4_1:33671431-33671450 | Msa0544760:intron | 45.0% | |
| TGCATATCTTGGGCTGTTGA+AGG | - | chr4_1:33671496-33671515 | Msa0544760:intron | 45.0% | |
| ATATCTTGGGCTGTTGAAGG+TGG | - | chr4_1:33671499-33671518 | Msa0544760:intron | 45.0% | |
| TATCTTGGGCTGTTGAAGGT+GGG | - | chr4_1:33671500-33671519 | Msa0544760:intron | 45.0% | |
| AGATGTTGCTAAACCTCCCT+CGG | + | chr4_1:33671528-33671547 | None:intergenic | 45.0% | |
| AGCAACATCTCTTGCAACTG+AGG | - | chr4_1:33671538-33671557 | Msa0544760:intron | 45.0% | |
| ACAGTTCTCACACGTTTCCA+AGG | + | chr4_1:33671754-33671773 | None:intergenic | 45.0% | |
| GCAGGTTAAGTGCCATCTTA+AGG | + | chr4_1:33671796-33671815 | None:intergenic | 45.0% | |
| GTACAGGAATTTCATGCAGC+TGG | - | chr4_1:33672028-33672047 | Msa0544760:intron | 45.0% | |
| ! | TCATGCAGCTGGTATTTTCC+GGG | - | chr4_1:33672039-33672058 | Msa0544760:intron | 45.0% |
| ! | GTATTTTCCGGGGATGATAG+TGG | - | chr4_1:33672050-33672069 | Msa0544760:intron | 45.0% |
| AACCTTTCCACTATCATCCC+CGG | + | chr4_1:33672060-33672079 | None:intergenic | 45.0% | |
| TTTGTGAAGGGTCTATTGGC+AGG | - | chr4_1:33672180-33672199 | Msa0544760:intron | 45.0% | |
| GACAGCTAGCTAAAGAGGTA+AGG | + | chr4_1:33672221-33672240 | None:intergenic | 45.0% | |
| !! | CCGTAAGAGTACTAACTAGG+AGG | + | chr4_1:33672332-33672351 | None:intergenic | 45.0% |
| TTTCAAACAGGCAGCTCGAT+TGG | + | chr4_1:33672368-33672387 | None:intergenic | 45.0% | |
| GAGATCTTAGCTATCCTACC+TGG | - | chr4_1:33672669-33672688 | Msa0544760:intron | 45.0% | |
| TCATTCACCCTCACATTGTC+GGG | + | chr4_1:33672699-33672718 | None:intergenic | 45.0% | |
| ! | GCTTACCTCCGATTTGAAAC+AGG | + | chr4_1:33672842-33672861 | None:intergenic | 45.0% |
| CAAATCGGAGGTAAGCAACA+TGG | - | chr4_1:33672846-33672865 | Msa0544760:CDS | 45.0% | |
| CAGATATTGGAGGACAGTGA+GGG | - | chr4_1:33672906-33672925 | Msa0544760:CDS | 45.0% | |
| TGTTAGAGCTGTGAGTGAAG+TGG | - | chr4_1:33672935-33672954 | Msa0544760:CDS | 45.0% | |
| ATGGAAGCAAAGCTCATCTC+AGG | + | chr4_1:33673127-33673146 | None:intergenic | 45.0% | |
| !! | TGACATGCCTGATTGGTCTG+AGG | - | chr4_1:33669774-33669793 | Msa0544760:CDS | 50.0% |
| GGGTCAAACACAATGCTCTC+AGG | + | chr4_1:33669871-33669890 | None:intergenic | 50.0% | |
| GTATAAGGTCCACGACCAAG+AGG | + | chr4_1:33669892-33669911 | None:intergenic | 50.0% | |
| CTTGGTCGTGGACCTTATAC+TGG | - | chr4_1:33669892-33669911 | Msa0544760:CDS | 50.0% | |
| TTGCTTACACTTCGCCCAAC+AGG | - | chr4_1:33669965-33669984 | Msa0544760:CDS | 50.0% | |
| TTACACTTCGCCCAACAGGT+AGG | - | chr4_1:33669969-33669988 | Msa0544760:CDS | 50.0% | |
| TGTGATGCCACCTACCTGTT+GGG | + | chr4_1:33669982-33670001 | None:intergenic | 50.0% | |
| TTGTGATGCCACCTACCTGT+TGG | + | chr4_1:33669983-33670002 | None:intergenic | 50.0% | |
| !! | CCAATTTCTGAGATTGCCCC+CGG | + | chr4_1:33670144-33670163 | None:intergenic | 50.0% |
| CTTGGAGTATGCTCCTCTCA+AGG | + | chr4_1:33670185-33670204 | None:intergenic | 50.0% | |
| ! | CTTGAGAGGAGCATACTCCA+AGG | - | chr4_1:33670183-33670202 | Msa0544760:intron | 50.0% |
| CCAGGATAGTCTACGAAAGC+TGG | + | chr4_1:33670617-33670636 | None:intergenic | 50.0% | |
| CCAGCTTTCGTAGACTATCC+TGG | - | chr4_1:33670614-33670633 | Msa0544760:CDS | 50.0% | |
| GGTTTGGGGGAAGAACATAG+AGG | - | chr4_1:33670946-33670965 | Msa0544760:intron | 50.0% | |
| TGGGGGAAGAACATAGAGGT+TGG | - | chr4_1:33670950-33670969 | Msa0544760:intron | 50.0% | |
| AGGCTAAGTGGGATAGCTCA+CGG | - | chr4_1:33671112-33671131 | Msa0544760:CDS | 50.0% | |
| ATCTTGGGCTGTTGAAGGTG+GGG | - | chr4_1:33671501-33671520 | Msa0544760:intron | 50.0% | |
| GATGTTGCTAAACCTCCCTC+GGG | + | chr4_1:33671527-33671546 | None:intergenic | 50.0% | |
| TCTCTTGCAACTGAGGCTGA+AGG | - | chr4_1:33671545-33671564 | Msa0544760:intron | 50.0% | |
| CTCTTGCAACTGAGGCTGAA+GGG | - | chr4_1:33671546-33671565 | Msa0544760:intron | 50.0% | |
| TCTTGCAACTGAGGCTGAAG+GGG | - | chr4_1:33671547-33671566 | Msa0544760:intron | 50.0% | |
| ! | CATGCAGCTGGTATTTTCCG+GGG | - | chr4_1:33672040-33672059 | Msa0544760:intron | 50.0% |
| !! | TTCCGGGGATGATAGTGGAA+AGG | - | chr4_1:33672055-33672074 | Msa0544760:intron | 50.0% |
| AGGAGAAAAGGCTGGGACAT+CGG | - | chr4_1:33672647-33672666 | Msa0544760:intron | 50.0% | |
| GCAGATATTGGAGGACAGTG+AGG | - | chr4_1:33672905-33672924 | Msa0544760:CDS | 50.0% | |
| GAGGTAGCAAGCAACGTGTG+TGG | + | chr4_1:33669503-33669522 | None:intergenic | 55.0% | |
| GTGTTTGACCCTCTTGGTCG+TGG | - | chr4_1:33669880-33669899 | Msa0544760:CDS | 55.0% | |
| CCGGGGGCAATCTCAGAAAT+TGG | - | chr4_1:33670141-33670160 | Msa0544760:intron | 55.0% | |
| TGGAGCTCCCGACAATGTGA+GGG | - | chr4_1:33672689-33672708 | Msa0544760:intron | 55.0% | |
| CACTTCGCCCAACAGGTAGG+TGG | - | chr4_1:33669972-33669991 | Msa0544760:CDS | 60.0% | |
| CATTGTCGGGAGCTCCAGGT+AGG | + | chr4_1:33672686-33672705 | None:intergenic | 60.0% | |
| CTCACATTGTCGGGAGCTCC+AGG | + | chr4_1:33672690-33672709 | None:intergenic | 60.0% | |
| CTGGAGCTCCCGACAATGTG+AGG | - | chr4_1:33672688-33672707 | Msa0544760:intron | 60.0% | |
| CTGTTGAAGGTGGGGCCCGA+GGG | - | chr4_1:33671509-33671528 | Msa0544760:intron | 65.0% | |
| GCTGTTGAAGGTGGGGCCCG+AGG | - | chr4_1:33671508-33671527 | Msa0544760:intron | 70.0% | |
| TTGAAGGTGGGGCCCGAGGG+AGG | - | chr4_1:33671512-33671531 | Msa0544760:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 33669459 | 33673222 | 33669459 | ID=Msa0544760;Name=Msa0544760 |
| chr4_1 | mRNA | 33669459 | 33673222 | 33669459 | ID=Msa0544760-mRNA-1;Parent=Msa0544760;Name=Msa0544760-mRNA-1;_AED=0.04;_eAED=0.04;_QI=199|1|1|1|1|1|4|197|391 |
| chr4_1 | exon | 33669459 | 33670055 | 33669459 | ID=Msa0544760-mRNA-1:exon:8607;Parent=Msa0544760-mRNA-1 |
| chr4_1 | exon | 33670480 | 33670647 | 33670480 | ID=Msa0544760-mRNA-1:exon:8606;Parent=Msa0544760-mRNA-1 |
| chr4_1 | exon | 33671027 | 33671305 | 33671027 | ID=Msa0544760-mRNA-1:exon:8605;Parent=Msa0544760-mRNA-1 |
| chr4_1 | exon | 33672695 | 33673222 | 33672695 | ID=Msa0544760-mRNA-1:exon:8604;Parent=Msa0544760-mRNA-1 |
| chr4_1 | five_prime_UTR | 33673024 | 33673222 | 33673024 | ID=Msa0544760-mRNA-1:five_prime_utr;Parent=Msa0544760-mRNA-1 |
| chr4_1 | CDS | 33672695 | 33673023 | 33672695 | ID=Msa0544760-mRNA-1:cds;Parent=Msa0544760-mRNA-1 |
| chr4_1 | CDS | 33671027 | 33671305 | 33671027 | ID=Msa0544760-mRNA-1:cds;Parent=Msa0544760-mRNA-1 |
| chr4_1 | CDS | 33670480 | 33670647 | 33670480 | ID=Msa0544760-mRNA-1:cds;Parent=Msa0544760-mRNA-1 |
| chr4_1 | CDS | 33669656 | 33670055 | 33669656 | ID=Msa0544760-mRNA-1:cds;Parent=Msa0544760-mRNA-1 |
| chr4_1 | three_prime_UTR | 33669459 | 33669655 | 33669459 | ID=Msa0544760-mRNA-1:three_prime_utr;Parent=Msa0544760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
