Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0679250 | XP_013455698.1 | 96.419 | 391 | 14 | 0 | 1 | 391 | 1 | 391 | 0.0 | 782 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0679250 | sp|Q8VWF6|SSL3_ARATH | 71.503 | 386 | 107 | 2 | 7 | 391 | 6 | 389 | 0.0 | 589 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0679250 | A0A072UIZ0 | 96.419 | 391 | 14 | 0 | 1 | 391 | 1 | 391 | 0.0 | 782 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0679250 | Msa1421700 | 0.812936 | 3.298315e-51 | -8.615850e-47 |
| Msa0544760 | Msa0679250 | 0.990369 | 2.632188e-182 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0679250 | MtrunA17_Chr4g0025341 | 96.419 | 391 | 14 | 0 | 1 | 391 | 1 | 391 | 0.0 | 782 |
| Msa0679250 | MtrunA17_Chr2g0322241 | 78.316 | 392 | 84 | 1 | 1 | 391 | 4 | 395 | 0.0 | 645 |
| Msa0679250 | MtrunA17_Chr7g0256581 | 51.765 | 340 | 153 | 5 | 55 | 391 | 38 | 369 | 1.14e-117 | 346 |
| Msa0679250 | MtrunA17_Chr7g0256571 | 50.733 | 341 | 155 | 6 | 55 | 391 | 38 | 369 | 2.77e-115 | 340 |
| Msa0679250 | MtrunA17_Chr7g0256561 | 48.974 | 341 | 124 | 6 | 54 | 391 | 42 | 335 | 1.45e-103 | 309 |
| Msa0679250 | MtrunA17_Chr2g0329531 | 42.711 | 391 | 214 | 6 | 5 | 388 | 16 | 403 | 2.87e-101 | 306 |
| Msa0679250 | MtrunA17_Chr5g0443561 | 48.225 | 338 | 123 | 6 | 57 | 391 | 35 | 323 | 1.40e-98 | 296 |
| Msa0679250 | MtrunA17_Chr7g0256591 | 44.277 | 332 | 176 | 7 | 66 | 389 | 54 | 384 | 8.76e-94 | 286 |
| Msa0679250 | MtrunA17_Chr7g0256601 | 43.598 | 328 | 177 | 7 | 70 | 389 | 88 | 415 | 3.78e-90 | 278 |
| Msa0679250 | MtrunA17_Chr4g0062001 | 38.484 | 343 | 171 | 10 | 58 | 389 | 21 | 334 | 3.31e-73 | 231 |
| Msa0679250 | MtrunA17_Chr8g0376581 | 38.348 | 339 | 172 | 9 | 56 | 389 | 24 | 330 | 2.27e-71 | 226 |
| Msa0679250 | MtrunA17_Chr4g0062021 | 38.643 | 339 | 164 | 11 | 64 | 389 | 39 | 346 | 6.09e-65 | 211 |
| Msa0679250 | MtrunA17_Chr4g0062031 | 37.576 | 330 | 157 | 7 | 68 | 389 | 36 | 324 | 4.70e-64 | 207 |
| Msa0679250 | MtrunA17_Chr2g0307721 | 38.318 | 321 | 161 | 7 | 68 | 382 | 45 | 334 | 1.77e-59 | 206 |
| Msa0679250 | MtrunA17_Chr2g0307721 | 36.280 | 328 | 172 | 7 | 67 | 388 | 496 | 792 | 6.31e-56 | 196 |
| Msa0679250 | MtrunA17_Chr2g0307721 | 50.000 | 82 | 40 | 1 | 123 | 203 | 340 | 421 | 1.44e-14 | 75.5 |
| Msa0679250 | MtrunA17_Chr8g0370761 | 32.190 | 379 | 211 | 10 | 10 | 386 | 27 | 361 | 7.12e-48 | 167 |
| Msa0679250 | MtrunA17_Chr8g0370791 | 31.565 | 377 | 216 | 9 | 10 | 386 | 27 | 361 | 5.66e-45 | 159 |
| Msa0679250 | MtrunA17_Chr2g0300841 | 31.298 | 262 | 152 | 5 | 142 | 391 | 112 | 357 | 1.69e-36 | 136 |
| Msa0679250 | MtrunA17_Chr8g0370771 | 33.333 | 234 | 146 | 4 | 154 | 387 | 4 | 227 | 4.03e-35 | 129 |
| Msa0679250 | MtrunA17_Chr4g0020271 | 33.981 | 206 | 111 | 3 | 179 | 383 | 2 | 183 | 1.04e-33 | 124 |
| Msa0679250 | MtrunA17_Chr2g0300851 | 29.348 | 276 | 166 | 5 | 128 | 391 | 91 | 349 | 1.21e-33 | 128 |
| Msa0679250 | MtrunA17_Chr2g0300861 | 30.800 | 250 | 160 | 5 | 142 | 387 | 124 | 364 | 1.88e-32 | 125 |
| Msa0679250 | MtrunA17_Chr4g0062051 | 42.553 | 141 | 71 | 4 | 68 | 203 | 40 | 175 | 7.90e-26 | 102 |
| Msa0679250 | MtrunA17_Chr4g0061871 | 44.330 | 97 | 54 | 0 | 203 | 299 | 18 | 114 | 4.58e-24 | 96.3 |
| Msa0679250 | MtrunA17_Chr8g0370801 | 37.037 | 108 | 65 | 1 | 153 | 257 | 2 | 109 | 7.12e-20 | 84.3 |
| Msa0679250 | MtrunA17_Chr4g0062061 | 27.027 | 148 | 76 | 1 | 242 | 389 | 4 | 119 | 2.42e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0679250 | AT1G08470.1 | 71.503 | 386 | 107 | 2 | 7 | 391 | 6 | 389 | 0.0 | 589 |
| Msa0679250 | AT5G22020.3 | 68.085 | 376 | 117 | 2 | 17 | 391 | 22 | 395 | 0.0 | 550 |
| Msa0679250 | AT5G22020.1 | 68.085 | 376 | 117 | 2 | 17 | 391 | 22 | 395 | 0.0 | 550 |
| Msa0679250 | AT5G22020.2 | 68.085 | 376 | 117 | 2 | 17 | 391 | 22 | 395 | 0.0 | 550 |
| Msa0679250 | AT3G57030.1 | 50.720 | 347 | 162 | 4 | 48 | 391 | 34 | 374 | 1.50e-121 | 357 |
| Msa0679250 | AT3G59530.3 | 43.434 | 396 | 202 | 7 | 1 | 388 | 13 | 394 | 1.69e-103 | 312 |
| Msa0679250 | AT3G59530.2 | 43.434 | 396 | 202 | 7 | 1 | 388 | 13 | 394 | 1.69e-103 | 312 |
| Msa0679250 | AT3G59530.1 | 43.434 | 396 | 202 | 7 | 1 | 388 | 13 | 394 | 1.69e-103 | 312 |
| Msa0679250 | AT3G57010.1 | 47.853 | 326 | 155 | 6 | 68 | 388 | 52 | 367 | 2.64e-99 | 300 |
| Msa0679250 | AT3G57020.1 | 48.182 | 330 | 148 | 8 | 68 | 388 | 51 | 366 | 4.93e-95 | 289 |
| Msa0679250 | AT2G41300.1 | 45.426 | 317 | 159 | 5 | 76 | 388 | 84 | 390 | 1.23e-91 | 281 |
| Msa0679250 | AT3G57020.2 | 46.341 | 328 | 143 | 7 | 68 | 388 | 51 | 352 | 5.69e-89 | 273 |
| Msa0679250 | AT2G41290.1 | 42.061 | 359 | 189 | 9 | 46 | 391 | 24 | 376 | 9.62e-87 | 268 |
| Msa0679250 | AT1G74000.1 | 37.994 | 329 | 158 | 10 | 70 | 391 | 40 | 329 | 5.86e-54 | 182 |
| Msa0679250 | AT1G74010.1 | 38.739 | 333 | 157 | 11 | 66 | 391 | 33 | 325 | 1.02e-53 | 181 |
| Msa0679250 | AT1G74020.1 | 35.455 | 330 | 167 | 9 | 69 | 391 | 37 | 327 | 4.75e-51 | 174 |
| Msa0679250 | AT3G51440.1 | 32.955 | 264 | 152 | 5 | 56 | 317 | 55 | 295 | 1.04e-34 | 132 |
| Msa0679250 | AT3G51420.1 | 29.254 | 335 | 202 | 9 | 56 | 387 | 55 | 357 | 5.72e-34 | 130 |
| Msa0679250 | AT3G51430.1 | 30.476 | 315 | 183 | 10 | 7 | 317 | 13 | 295 | 4.64e-33 | 127 |
| Msa0679250 | AT3G51450.1 | 29.114 | 316 | 195 | 8 | 2 | 317 | 9 | 295 | 3.56e-32 | 125 |
| Msa0679250 | AT3G51430.2 | 30.476 | 315 | 181 | 11 | 7 | 317 | 13 | 293 | 7.36e-32 | 124 |
Find 113 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACGTAAATATTGGTTAAA+AGG | 0.214137 | 4_4:-36802448 | Msa0679250:CDS |
| TGTTCTGGAATGGACTTTCT+TGG | 0.232101 | 4_4:-36805141 | Msa0679250:CDS |
| CCCTGAATTTGAATCCAAAA+AGG | 0.232481 | 4_4:-36805326 | Msa0679250:CDS |
| TATTTACTCTTATTCTTTGT+TGG | 0.235592 | 4_4:+36801868 | None:intergenic |
| TTATGTTCATCTCTGTCTTT+AGG | 0.242130 | 4_4:+36805277 | None:intergenic |
| AGTTTATAAACTGCAATAAA+AGG | 0.276571 | 4_4:+36802076 | None:intergenic |
| TACATTGCAGATGCATATCT+TGG | 0.310576 | 4_4:-36803591 | Msa0679250:CDS |
| AATAATGTACCTTGAGTTCT+TGG | 0.332639 | 4_4:-36801986 | Msa0679250:three_prime_UTR |
| TGTGTAGATTACGTAAATAT+TGG | 0.346326 | 4_4:-36802456 | Msa0679250:intron |
| CTTGGTCGTGGACCTTATAC+TGG | 0.347823 | 4_4:-36805184 | Msa0679250:CDS |
| TTGCTTAAGGAAATGCCATT+TGG | 0.348960 | 4_4:+36802939 | None:intergenic |
| CATATCTGTGGAAGGCCTTT+GGG | 0.349781 | 4_4:-36803645 | Msa0679250:CDS |
| ACATATCTGTGGAAGGCCTT+TGG | 0.349805 | 4_4:-36803646 | Msa0679250:CDS |
| TCAGTCTTCACATAACTAAA+TGG | 0.356858 | 4_4:+36803669 | None:intergenic |
| GAAGGAACCATCTTTGCTTA+AGG | 0.369652 | 4_4:+36802926 | None:intergenic |
| GCTATAGTGCTATGCTGAAA+TGG | 0.373241 | 4_4:+36805355 | None:intergenic |
| GTTCTGGAATGGACTTTCTT+GGG | 0.382508 | 4_4:-36805140 | Msa0679250:CDS |
| GTTTGCTCTATACTGTGGTT+TGG | 0.385134 | 4_4:-36805380 | Msa0679250:CDS |
| TGCTTAAGGAAATGCCATTT+GGG | 0.387701 | 4_4:+36802940 | None:intergenic |
| AGCAAACAAGAGAAAGATAA+TGG | 0.392575 | 4_4:+36805396 | None:intergenic |
| ATCTGCAGTAATTTACCTTC+AGG | 0.399510 | 4_4:+36802187 | None:intergenic |
| GGCATTTCCTTAAGCAAAGA+TGG | 0.401090 | 4_4:-36802933 | Msa0679250:CDS |
| AGTATAGCTTTCCTTATCCT+TGG | 0.402497 | 4_4:+36802289 | None:intergenic |
| GCTTACCTCCGATTTGAAAC+AGG | 0.409854 | 4_4:+36802236 | None:intergenic |
| GAATGAATAACGTGTTTGTT+AGG | 0.415511 | 4_4:+36805530 | None:intergenic |
| AGGTAAATTACTGCAGATAT+TGG | 0.424873 | 4_4:-36802182 | Msa0679250:CDS |
| GTTAGGTTTCAATTGAATAG+TGG | 0.426954 | 4_4:+36805547 | None:intergenic |
| ACATCGTTGGTAAATCTTAG+AGG | 0.430160 | 4_4:+36803504 | None:intergenic |
| TCATTCACCCTCACATTGTC+GGG | 0.430646 | 4_4:+36802379 | None:intergenic |
| CCATCAGCAACACCAGTATA+AGG | 0.434274 | 4_4:+36805172 | None:intergenic |
| AAAAGGTTGACATGCCTGAT+TGG | 0.446198 | 4_4:-36805309 | Msa0679250:CDS |
| CTGGTTTATATCCAAGGATA+AGG | 0.446658 | 4_4:-36802300 | Msa0679250:CDS |
| CTAAGATTTGACAAGAAAAC+AGG | 0.452434 | 4_4:-36803621 | Msa0679250:CDS |
| TTCATTCACCCTCACATTGT+CGG | 0.455467 | 4_4:+36802378 | None:intergenic |
| TTGCTTACACTTCGCCCAAC+AGG | 0.463778 | 4_4:-36805111 | Msa0679250:intron |
| TTTGTGAAGGGTCTATTGGC+AGG | 0.466385 | 4_4:-36802896 | Msa0679250:intron |
| AAAGATGGTCAACTTTGGAT+TGG | 0.469113 | 4_4:-36802112 | Msa0679250:CDS |
| AACAGGTATTGATTCTTTGT+CGG | 0.469355 | 4_4:+36802253 | None:intergenic |
| AATCAATACCTGTTTCAAAT+CGG | 0.471637 | 4_4:-36802244 | Msa0679250:CDS |
| CTCACATTGTCGGGAGCTCC+AGG | 0.471745 | 4_4:+36802388 | None:intergenic |
| CTGTTGAAGGTGGGGCCCGA+GGG | 0.473423 | 4_4:-36803567 | Msa0679250:CDS |
| AGCATTGTGTTTGACCCTCT+TGG | 0.482152 | 4_4:-36805202 | Msa0679250:CDS |
| AAGAGAAAGATGGTCAACTT+TGG | 0.483380 | 4_4:-36802117 | Msa0679250:CDS |
| TATTGATTCTTTGTCGGTAT+CGG | 0.484071 | 4_4:+36802259 | None:intergenic |
| GCTGTTGAAGGTGGGGCCCG+AGG | 0.486767 | 4_4:-36803568 | Msa0679250:CDS |
| TTGAAGGTGGGGCCCGAGGG+AGG | 0.489783 | 4_4:-36803564 | Msa0679250:CDS |
| TATCTTGGGCTGTTGAAGGT+GGG | 0.490836 | 4_4:-36803576 | Msa0679250:CDS |
| ATCTTGGGCTGTTGAAGGTG+GGG | 0.493839 | 4_4:-36803575 | Msa0679250:CDS |
| ATGGAAGCAAAGCTCATCTC+AGG | 0.494668 | 4_4:+36801951 | None:intergenic |
| ATATTTGTTTCTCAATGTAA+AGG | 0.499322 | 4_4:+36805607 | None:intergenic |
| AGATGTTGCTAAACCTCCCT+CGG | 0.499939 | 4_4:+36803551 | None:intergenic |
| GTGTTTGACCCTCTTGGTCG+TGG | 0.500600 | 4_4:-36805196 | Msa0679250:CDS |
| GTACAGGAATTTCATGCAGC+TGG | 0.501498 | 4_4:-36803048 | Msa0679250:intron |
| ATATTGGTTAAAAGGAGAAA+AGG | 0.502297 | 4_4:-36802440 | Msa0679250:CDS |
| CTATAGTGCTATGCTGAAAT+GGG | 0.502739 | 4_4:+36805356 | None:intergenic |
| TTAGGTTTCAATTGAATAGT+GGG | 0.504081 | 4_4:+36805548 | None:intergenic |
| CTCTTGCAACTGAGGCTGAA+GGG | 0.504563 | 4_4:-36803530 | Msa0679250:CDS |
| TTAGGAACCTCAGACCAATC+AGG | 0.508111 | 4_4:+36805295 | None:intergenic |
| TGCATATCTTGGGCTGTTGA+AGG | 0.508916 | 4_4:-36803580 | Msa0679250:CDS |
| GGGTCAAACACAATGCTCTC+AGG | 0.511757 | 4_4:+36805208 | None:intergenic |
| TGGTTAAAAGGAGAAAAGGC+TGG | 0.512231 | 4_4:-36802436 | Msa0679250:CDS |
| AAATGGTGTTGCATTTGCTA+TGG | 0.513816 | 4_4:+36803686 | None:intergenic |
| AGGTTGAAATGCGAATGTTA+TGG | 0.518887 | 4_4:+36805453 | None:intergenic |
| AGGAGAAAAGGCTGGGACAT+CGG | 0.522741 | 4_4:-36802428 | Msa0679250:CDS |
| TGTTAGAGCTGTGAGTGAAG+TGG | 0.524832 | 4_4:-36802140 | Msa0679250:CDS |
| ACATTGCAGATGCATATCTT+GGG | 0.529752 | 4_4:-36803590 | Msa0679250:CDS |
| TTGATCTTCAGCTCTATCAC+AGG | 0.531244 | 4_4:-36802032 | Msa0679250:three_prime_UTR |
| ATATCTTGGGCTGTTGAAGG+TGG | 0.531295 | 4_4:-36803577 | Msa0679250:CDS |
| CTCTTGTTTGCTCTATACTG+TGG | 0.532134 | 4_4:-36805385 | Msa0679250:CDS |
| CCTTATACTGGTGTTGCTGA+TGG | 0.535929 | 4_4:-36805172 | Msa0679250:CDS |
| TTGTCAAATCTTAGTCCCAA+AGG | 0.536364 | 4_4:+36803630 | None:intergenic |
| AATGTACCTTGAGTTCTTGG+TGG | 0.542542 | 4_4:-36801983 | Msa0679250:three_prime_UTR |
| AATGGTGTTGCATTTGCTAT+GGG | 0.543525 | 4_4:+36803687 | None:intergenic |
| AGGAATGTTCAATTCCCAAA+TGG | 0.546952 | 4_4:-36802954 | Msa0679250:CDS |
| AACCTTTCCACTATCATCCC+CGG | 0.549832 | 4_4:+36803019 | None:intergenic |
| TGTGATGCCACCTACCTGTT+GGG | 0.550686 | 4_4:+36805097 | None:intergenic |
| ACTATACTGGTTTATATCCA+AGG | 0.552390 | 4_4:-36802306 | Msa0679250:CDS |
| GTTTCAATTGAATAGTGGGT+AGG | 0.555087 | 4_4:+36805552 | None:intergenic |
| AACATTCCTCACTAGAACAG+TGG | 0.558934 | 4_4:+36802968 | None:intergenic |
| TTTATTCCACCAAGAACTCA+AGG | 0.564758 | 4_4:+36801977 | None:intergenic |
| TTCCGGGGATGATAGTGGAA+AGG | 0.565527 | 4_4:-36803021 | Msa0679250:CDS |
| GATGTTGCTAAACCTCCCTC+GGG | 0.566662 | 4_4:+36803552 | None:intergenic |
| TCTTGCAACTGAGGCTGAAG+GGG | 0.566753 | 4_4:-36803529 | Msa0679250:CDS |
| TAAATTACTGCAGATATTGG+AGG | 0.568473 | 4_4:-36802179 | Msa0679250:CDS |
| AGCAACATCTCTTGCAACTG+AGG | 0.569286 | 4_4:-36803538 | Msa0679250:CDS |
| TCTCTTGCAACTGAGGCTGA+AGG | 0.569638 | 4_4:-36803531 | Msa0679250:CDS |
| GAGATCTTAGCTATCCTACC+TGG | 0.569639 | 4_4:-36802406 | Msa0679250:CDS |
| CAAGAGAAAGATAATGGCAA+AGG | 0.575699 | 4_4:+36805402 | None:intergenic |
| AGAGACATGATGTTATTGAA+AGG | 0.575842 | 4_4:+36805433 | None:intergenic |
| GGTTAAAAGGAGAAAAGGCT+GGG | 0.576153 | 4_4:-36802435 | Msa0679250:CDS |
| TGAATCAACATCGACATCGT+TGG | 0.579014 | 4_4:+36803491 | None:intergenic |
| GTGATAGAGCTGAAGATCAA+AGG | 0.580671 | 4_4:+36802035 | None:intergenic |
| CTGGAGCTCCCGACAATGTG+AGG | 0.585247 | 4_4:-36802387 | Msa0679250:CDS |
| CAATACCTGTTTCAAATCGG+AGG | 0.600119 | 4_4:-36802241 | Msa0679250:CDS |
| GCAGTTCTATTTATCAGAGG+AGG | 0.604762 | 4_4:-36803443 | Msa0679250:intron |
| AATTGAATAGTGGGTAGGTG+AGG | 0.607127 | 4_4:+36805557 | None:intergenic |
| CAAATCGGAGGTAAGCAACA+TGG | 0.612312 | 4_4:-36802229 | Msa0679250:CDS |
| AAAGCAGTTCTATTTATCAG+AGG | 0.613913 | 4_4:-36803446 | Msa0679250:CDS |
| TGGAGCTCCCGACAATGTGA+GGG | 0.616670 | 4_4:-36802386 | Msa0679250:CDS |
| TGACATGCCTGATTGGTCTG+AGG | 0.623043 | 4_4:-36805302 | Msa0679250:CDS |
| AGTGAAGTGGAAGAGAAAGA+TGG | 0.626890 | 4_4:-36802127 | Msa0679250:CDS |
| GATGTCGATGTTGATTCAGA+AGG | 0.627197 | 4_4:-36803486 | Msa0679250:CDS |
| CAGATATTGGAGGACAGTGA+GGG | 0.630580 | 4_4:-36802169 | Msa0679250:CDS |
| GCAGATATTGGAGGACAGTG+AGG | 0.631429 | 4_4:-36802170 | Msa0679250:CDS |
| AATGTGAGGGTGAATGAAGA+TGG | 0.632486 | 4_4:-36802373 | Msa0679250:CDS |
| AGACTGAACATATCTGTGGA+AGG | 0.642076 | 4_4:-36803653 | Msa0679250:CDS |
| GAGGTAGCAAGCAACGTGTG+TGG | 0.645184 | 4_4:+36805576 | None:intergenic |
| AGAAAACCACTGTTCTAGTG+AGG | 0.645940 | 4_4:-36802974 | Msa0679250:CDS |
| CATTGTCGGGAGCTCCAGGT+AGG | 0.648945 | 4_4:+36802392 | None:intergenic |
| ATTGTGAAGTATAGTCCTGA+AGG | 0.659981 | 4_4:-36802202 | Msa0679250:CDS |
| GTATAAGGTCCACGACCAAG+AGG | 0.671165 | 4_4:+36805187 | None:intergenic |
| TATAAGGTCCACGACCAAGA+GGG | 0.672876 | 4_4:+36805188 | None:intergenic |
| GTGAAGACTGAACATATCTG+TGG | 0.676259 | 4_4:-36803657 | Msa0679250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAGATTATTTTATTTTTTT+TGG | - | chr4_4:36802503-36802522 | Msa0679250:intron | 10.0% |
| !!! | TTTTATTTTTTTTGGAAATT+TGG | - | chr4_4:36802511-36802530 | Msa0679250:intron | 10.0% |
| !!! | ATTTTTTAAAAGATTCATTT+TGG | + | chr4_4:36803632-36803651 | None:intergenic | 10.0% |
| !!! | TAAAAATTGTAGTATTTTGT+AGG | - | chr4_4:36802452-36802471 | Msa0679250:CDS | 15.0% |
| !! | TCAAATAATTCAATCTAAAT+AGG | - | chr4_4:36803144-36803163 | Msa0679250:intron | 15.0% |
| !! | TTTAATGAATATTCTAACTT+AGG | + | chr4_4:36803274-36803293 | None:intergenic | 15.0% |
| !! | ATTAATTGAGTAAAAGATAA+AGG | - | chr4_4:36803663-36803682 | Msa0679250:CDS | 15.0% |
| !! | TTAATTGAGTAAAAGATAAA+GGG | - | chr4_4:36803664-36803683 | Msa0679250:CDS | 15.0% |
| !! | AAGAAATTATTGAAATGAAA+AGG | + | chr4_4:36805014-36805033 | None:intergenic | 15.0% |
| !!! | ATATTTGTTTCTCAATGTAA+AGG | + | chr4_4:36801888-36801907 | None:intergenic | 20.0% |
| !!! | GAATGTTATGGTTTTAAAAA+TGG | + | chr4_4:36802030-36802049 | None:intergenic | 20.0% |
| !!! | AGGTAAAATTTAGTATGTTT+TGG | - | chr4_4:36802472-36802491 | Msa0679250:intron | 20.0% |
| !!! | AAAGCATTTATCATAACTTA+TGG | + | chr4_4:36802846-36802865 | None:intergenic | 20.0% |
| !! | CAATAACAAAGTATAAACTA+TGG | + | chr4_4:36803171-36803190 | None:intergenic | 20.0% |
| !!! | CATAGTTTATACTTTGTTAT+TGG | - | chr4_4:36803169-36803188 | Msa0679250:intron | 20.0% |
| !!! | TGTGTCATTTAAAAGTAAAA+AGG | - | chr4_4:36803193-36803212 | Msa0679250:intron | 20.0% |
| !! | AAAAATCTCTAATTTCAGTT+AGG | + | chr4_4:36803456-36803475 | None:intergenic | 20.0% |
| !! | TCTATATCTATTTGAAAAAC+AGG | - | chr4_4:36803770-36803789 | Msa0679250:intron | 20.0% |
| !!! | AGAAGGAAATGTATATTTTA+CGG | - | chr4_4:36804023-36804042 | Msa0679250:intron | 20.0% |
| !!! | AGTTTCTTATTTTTGAAACT+TGG | - | chr4_4:36804722-36804741 | Msa0679250:intron | 20.0% |
| !!! | TTACGTAAATATTGGTTAAA+AGG | - | chr4_4:36805044-36805063 | Msa0679250:intron | 20.0% |
| !! | AGTTTATAAACTGCAATAAA+AGG | + | chr4_4:36805419-36805438 | None:intergenic | 20.0% |
| !! | AATAACCAAAAAAGACAATA+TGG | + | chr4_4:36805563-36805582 | None:intergenic | 20.0% |
| ! | TTAGGTTTCAATTGAATAGT+GGG | + | chr4_4:36801947-36801966 | None:intergenic | 25.0% |
| ! | TAGAGTATATAGGTTCTATT+CGG | + | chr4_4:36802894-36802913 | None:intergenic | 25.0% |
| ! | ATAGAACCTATATACTCTAT+AGG | - | chr4_4:36802895-36802914 | Msa0679250:intron | 25.0% |
| !!! | AGTTGAGTTGAATTTTATTG+AGG | - | chr4_4:36803222-36803241 | Msa0679250:intron | 25.0% |
| !!! | GTTGAGTTGAATTTTATTGA+GGG | - | chr4_4:36803223-36803242 | Msa0679250:intron | 25.0% |
| !!! | GGATCTAGTTATATTTTAAC+TGG | + | chr4_4:36803253-36803272 | None:intergenic | 25.0% |
| ! | CAATAAAGACAATTTAACGA+AGG | - | chr4_4:36803564-36803583 | Msa0679250:CDS | 25.0% |
| ! | AATTTAACGAAGGTAGTAAA+TGG | - | chr4_4:36803574-36803593 | Msa0679250:CDS | 25.0% |
| !! | TTTTGCTAAAGCTTAGAAAT+GGG | + | chr4_4:36803708-36803727 | None:intergenic | 25.0% |
| ! | GAATAATCATAACCTTAAGA+TGG | - | chr4_4:36804197-36804216 | Msa0679250:intron | 25.0% |
| !! | AGCAGATAAAATTTTCAAAC+AGG | + | chr4_4:36804797-36804816 | None:intergenic | 25.0% |
| ! | AACATTAAGCTTAGTTTATC+AGG | + | chr4_4:36804897-36804916 | None:intergenic | 25.0% |
| ! | AATTAGTAAAGTGACACTTA+AGG | + | chr4_4:36804987-36805006 | None:intergenic | 25.0% |
| ! | TGTGTAGATTACGTAAATAT+TGG | - | chr4_4:36805036-36805055 | Msa0679250:intron | 25.0% |
| !! | ATATTGGTTAAAAGGAGAAA+AGG | - | chr4_4:36805052-36805071 | Msa0679250:intron | 25.0% |
| !! | TCTATGTTTTCATACTATAC+TGG | - | chr4_4:36805173-36805192 | Msa0679250:CDS | 25.0% |
| ! | AATCAATACCTGTTTCAAAT+CGG | - | chr4_4:36805248-36805267 | Msa0679250:CDS | 25.0% |
| GTTAGGTTTCAATTGAATAG+TGG | + | chr4_4:36801948-36801967 | None:intergenic | 30.0% | |
| GAATGAATAACGTGTTTGTT+AGG | + | chr4_4:36801965-36801984 | None:intergenic | 30.0% | |
| AGAGACATGATGTTATTGAA+AGG | + | chr4_4:36802062-36802081 | None:intergenic | 30.0% | |
| AGCAAACAAGAGAAAGATAA+TGG | + | chr4_4:36802099-36802118 | None:intergenic | 30.0% | |
| ! | CCTTTTTGGATTCAAATTCA+GGG | + | chr4_4:36802169-36802188 | None:intergenic | 30.0% |
| ! | ACCTTTTTGGATTCAAATTC+AGG | + | chr4_4:36802170-36802189 | None:intergenic | 30.0% |
| TTATGTTCATCTCTGTCTTT+AGG | + | chr4_4:36802218-36802237 | None:intergenic | 30.0% | |
| TGTTGCAAAAATCAGAGATA+AGG | - | chr4_4:36802240-36802259 | Msa0679250:CDS | 30.0% | |
| TTATTTAACAGTCCTGGTAA+TGG | + | chr4_4:36802424-36802443 | None:intergenic | 30.0% | |
| TAAGAACTTGAGTGTTATGA+CGG | - | chr4_4:36802660-36802679 | Msa0679250:intron | 30.0% | |
| ACTATGCCTATAGAGTATAT+AGG | + | chr4_4:36802904-36802923 | None:intergenic | 30.0% | |
| AACTGTTGAAAGACAATTCA+AGG | - | chr4_4:36803292-36803311 | Msa0679250:intron | 30.0% | |
| ACTGTTGAAAGACAATTCAA+GGG | - | chr4_4:36803293-36803312 | Msa0679250:intron | 30.0% | |
| TCGAGACATTTCATTATCTA+AGG | - | chr4_4:36803336-36803355 | Msa0679250:intron | 30.0% | |
| ACATTTCATTATCTAAGGAG+TGG | - | chr4_4:36803341-36803360 | Msa0679250:intron | 30.0% | |
| TTAGGATACAAGTTAGTGAT+CGG | + | chr4_4:36803438-36803457 | None:intergenic | 30.0% | |
| ! | CTTTTGCTAAAGCTTAGAAA+TGG | + | chr4_4:36803709-36803728 | None:intergenic | 30.0% |
| TCAGTCTTCACATAACTAAA+TGG | + | chr4_4:36803826-36803845 | None:intergenic | 30.0% | |
| CTAAGATTTGACAAGAAAAC+AGG | - | chr4_4:36803871-36803890 | Msa0679250:intron | 30.0% | |
| AAAGCAGTTCTATTTATCAG+AGG | - | chr4_4:36804046-36804065 | Msa0679250:intron | 30.0% | |
| !! | CAAATTAAGTTGAAGTTCCT+TGG | - | chr4_4:36804150-36804169 | Msa0679250:intron | 30.0% |
| TTGATGTGCAAGATGTATTA+AGG | - | chr4_4:36804257-36804276 | Msa0679250:intron | 30.0% | |
| ATTAAGGACAATGGTTTAAC+TGG | - | chr4_4:36804273-36804292 | Msa0679250:intron | 30.0% | |
| TTAAGGACAATGGTTTAACT+GGG | - | chr4_4:36804274-36804293 | Msa0679250:intron | 30.0% | |
| ! | TATGCGAAGAAAGTACATAT+AGG | + | chr4_4:36804320-36804339 | None:intergenic | 30.0% |
| CTGCAGAATTAAAAACTTCA+AGG | + | chr4_4:36804372-36804391 | None:intergenic | 30.0% | |
| AATTATGTCAGAAACAAGAC+AGG | + | chr4_4:36804421-36804440 | None:intergenic | 30.0% | |
| ! | TTCTGACATAATTTGTGTAC+AGG | - | chr4_4:36804428-36804447 | Msa0679250:intron | 30.0% |
| !!! | TCCTTCTTTGTTTTTTGTGA+AGG | - | chr4_4:36804583-36804602 | Msa0679250:intron | 30.0% |
| !!! | CCTTCTTTGTTTTTTGTGAA+GGG | - | chr4_4:36804584-36804603 | Msa0679250:intron | 30.0% |
| ! | AAGTGTTGTAATCAGTTTAG+TGG | - | chr4_4:36804944-36804963 | Msa0679250:intron | 30.0% |
| ! | TGAATGAAGATGGTGATTTT+TGG | - | chr4_4:36805129-36805148 | Msa0679250:CDS | 30.0% |
| ! | GAATGAAGATGGTGATTTTT+GGG | - | chr4_4:36805130-36805149 | Msa0679250:CDS | 30.0% |
| !! | ACTATACTGGTTTATATCCA+AGG | - | chr4_4:36805186-36805205 | Msa0679250:CDS | 30.0% |
| !! | TATTGATTCTTTGTCGGTAT+CGG | + | chr4_4:36805236-36805255 | None:intergenic | 30.0% |
| !! | AACAGGTATTGATTCTTTGT+CGG | + | chr4_4:36805242-36805261 | None:intergenic | 30.0% |
| AGGTAAATTACTGCAGATAT+TGG | - | chr4_4:36805310-36805329 | Msa0679250:CDS | 30.0% | |
| TAAATTACTGCAGATATTGG+AGG | - | chr4_4:36805313-36805332 | Msa0679250:CDS | 30.0% | |
| AATAATGTACCTTGAGTTCT+TGG | - | chr4_4:36805506-36805525 | Msa0679250:five_prime_UTR | 30.0% | |
| !!! | TGCTTCCATATTGTCTTTTT+TGG | - | chr4_4:36805555-36805574 | Msa0679250:five_prime_UTR | 30.0% |
| !! | GTTTCAATTGAATAGTGGGT+AGG | + | chr4_4:36801943-36801962 | None:intergenic | 35.0% |
| AGGTTGAAATGCGAATGTTA+TGG | + | chr4_4:36802042-36802061 | None:intergenic | 35.0% | |
| ! | CAAGAGAAAGATAATGGCAA+AGG | + | chr4_4:36802093-36802112 | None:intergenic | 35.0% |
| CTATAGTGCTATGCTGAAAT+GGG | + | chr4_4:36802139-36802158 | None:intergenic | 35.0% | |
| CCCTGAATTTGAATCCAAAA+AGG | - | chr4_4:36802166-36802185 | Msa0679250:CDS | 35.0% | |
| ! | AGGTTTTTGAATCAAGTGCA+AGG | - | chr4_4:36802260-36802279 | Msa0679250:CDS | 35.0% |
| ! | CTGATGGTAGAATTTTGTTC+TGG | - | chr4_4:36802336-36802355 | Msa0679250:CDS | 35.0% |
| !!! | GGTAGAATTTTGTTCTGGAA+TGG | - | chr4_4:36802341-36802360 | Msa0679250:CDS | 35.0% |
| AACACGTTATTTAACAGTCC+TGG | + | chr4_4:36802430-36802449 | None:intergenic | 35.0% | |
| AAGAACTTGAGTGTTATGAC+GGG | - | chr4_4:36802661-36802680 | Msa0679250:intron | 35.0% | |
| GACATGTTCATAAGCTTTCT+AGG | - | chr4_4:36802768-36802787 | Msa0679250:intron | 35.0% | |
| AAGAACTTACGAGACTGTTT+GGG | + | chr4_4:36803108-36803127 | None:intergenic | 35.0% | |
| TAAGAACTTACGAGACTGTT+TGG | + | chr4_4:36803109-36803128 | None:intergenic | 35.0% | |
| TCATTATCTAAGGAGTGGTT+TGG | - | chr4_4:36803346-36803365 | Msa0679250:intron | 35.0% | |
| CATTATCTAAGGAGTGGTTT+GGG | - | chr4_4:36803347-36803366 | Msa0679250:intron | 35.0% | |
| ATTATCTAAGGAGTGGTTTG+GGG | - | chr4_4:36803348-36803367 | Msa0679250:intron | 35.0% | |
| CGGTTGTTAGAAATTGTTAG+TGG | + | chr4_4:36803418-36803437 | None:intergenic | 35.0% | |
| !! | AATGGTGTTGCATTTGCTAT+GGG | + | chr4_4:36803808-36803827 | None:intergenic | 35.0% |
| !! | AAATGGTGTTGCATTTGCTA+TGG | + | chr4_4:36803809-36803828 | None:intergenic | 35.0% |
| TTGTCAAATCTTAGTCCCAA+AGG | + | chr4_4:36803865-36803884 | None:intergenic | 35.0% | |
| TACATTGCAGATGCATATCT+TGG | - | chr4_4:36803901-36803920 | Msa0679250:intron | 35.0% | |
| ACATTGCAGATGCATATCTT+GGG | - | chr4_4:36803902-36803921 | Msa0679250:intron | 35.0% | |
| ! | ACATCGTTGGTAAATCTTAG+AGG | + | chr4_4:36803991-36804010 | None:intergenic | 35.0% |
| GCAAGATGTATTAAGGACAA+TGG | - | chr4_4:36804264-36804283 | Msa0679250:intron | 35.0% | |
| ! | CTGGGATGATTATTGAGTTT+TGG | - | chr4_4:36804292-36804311 | Msa0679250:intron | 35.0% |
| ! | CAGTGGTTTTCTTTGTTGAA+GGG | + | chr4_4:36804510-36804529 | None:intergenic | 35.0% |
| ! | ACAGTGGTTTTCTTTGTTGA+AGG | + | chr4_4:36804511-36804530 | None:intergenic | 35.0% |
| AGGAATGTTCAATTCCCAAA+TGG | - | chr4_4:36804538-36804557 | Msa0679250:intron | 35.0% | |
| ! | TGCTTAAGGAAATGCCATTT+GGG | + | chr4_4:36804555-36804574 | None:intergenic | 35.0% |
| TTGCTTAAGGAAATGCCATT+TGG | + | chr4_4:36804556-36804575 | None:intergenic | 35.0% | |
| CCCTTCACAAAAAACAAAGA+AGG | + | chr4_4:36804587-36804606 | None:intergenic | 35.0% | |
| !!! | GTTTTTTGTGAAGGGTCTAT+TGG | - | chr4_4:36804592-36804611 | Msa0679250:intron | 35.0% |
| AGCTAAAGAGGTAAGGTTAA+AGG | + | chr4_4:36804630-36804649 | None:intergenic | 35.0% | |
| AAAAAGACAGCTAGCTAAAG+AGG | + | chr4_4:36804642-36804661 | None:intergenic | 35.0% | |
| AAACTGATTACAACACTTCG+TGG | + | chr4_4:36804942-36804961 | None:intergenic | 35.0% | |
| TAAAGTGACACTTAAGGCTA+CGG | + | chr4_4:36804981-36805000 | None:intergenic | 35.0% | |
| CTGGTTTATATCCAAGGATA+AGG | - | chr4_4:36805192-36805211 | Msa0679250:CDS | 35.0% | |
| AGTATAGCTTTCCTTATCCT+TGG | + | chr4_4:36805206-36805225 | None:intergenic | 35.0% | |
| ATTGTGAAGTATAGTCCTGA+AGG | - | chr4_4:36805290-36805309 | Msa0679250:CDS | 35.0% | |
| ATCTGCAGTAATTTACCTTC+AGG | + | chr4_4:36805308-36805327 | None:intergenic | 35.0% | |
| AAGAGAAAGATGGTCAACTT+TGG | - | chr4_4:36805375-36805394 | Msa0679250:CDS | 35.0% | |
| AAAGATGGTCAACTTTGGAT+TGG | - | chr4_4:36805380-36805399 | Msa0679250:CDS | 35.0% | |
| TTTATTCCACCAAGAACTCA+AGG | + | chr4_4:36805518-36805537 | None:intergenic | 35.0% | |
| !! | AATTGAATAGTGGGTAGGTG+AGG | + | chr4_4:36801938-36801957 | None:intergenic | 40.0% |
| ! | CTCTTGTTTGCTCTATACTG+TGG | - | chr4_4:36802107-36802126 | Msa0679250:CDS | 40.0% |
| GTTTGCTCTATACTGTGGTT+TGG | - | chr4_4:36802112-36802131 | Msa0679250:CDS | 40.0% | |
| GCTATAGTGCTATGCTGAAA+TGG | + | chr4_4:36802140-36802159 | None:intergenic | 40.0% | |
| ! | ATCAGGCATGTCAACCTTTT+TGG | + | chr4_4:36802183-36802202 | None:intergenic | 40.0% |
| AAAAGGTTGACATGCCTGAT+TGG | - | chr4_4:36802183-36802202 | Msa0679250:CDS | 40.0% | |
| !! | TGTTCTGGAATGGACTTTCT+TGG | - | chr4_4:36802351-36802370 | Msa0679250:CDS | 40.0% |
| !! | GTTCTGGAATGGACTTTCTT+GGG | - | chr4_4:36802352-36802371 | Msa0679250:CDS | 40.0% |
| !! | CGGATTAGTCGATCATTGAT+CGG | + | chr4_4:36802540-36802559 | None:intergenic | 40.0% |
| CGATCAATGATCGACTAATC+CGG | - | chr4_4:36802538-36802557 | Msa0679250:intron | 40.0% | |
| GATCAATGATCGACTAATCC+GGG | - | chr4_4:36802539-36802558 | Msa0679250:intron | 40.0% | |
| ATCAATGATCGACTAATCCG+GGG | - | chr4_4:36802540-36802559 | Msa0679250:intron | 40.0% | |
| TTCAAACTTGAGACCTTGAG+AGG | - | chr4_4:36802585-36802604 | Msa0679250:intron | 40.0% | |
| ! | GTGTTGTAGGTTTGAAACCT+TGG | + | chr4_4:36802619-36802638 | None:intergenic | 40.0% |
| GGTTTCAAACCTACAACACT+AGG | - | chr4_4:36802620-36802639 | Msa0679250:intron | 40.0% | |
| ! | ATGAGTTGACCTAGTGTTGT+AGG | + | chr4_4:36802632-36802651 | None:intergenic | 40.0% |
| AACACTAGGTCAACTCATGT+GGG | - | chr4_4:36802634-36802653 | Msa0679250:intron | 40.0% | |
| GACTATTTCATAAGCTCTCC+AGG | + | chr4_4:36803051-36803070 | None:intergenic | 40.0% | |
| ! | TTATCTAAGGAGTGGTTTGG+GGG | - | chr4_4:36803349-36803368 | Msa0679250:intron | 40.0% |
| GTTAGTGGAGAGATTCAAAC+TGG | + | chr4_4:36803403-36803422 | None:intergenic | 40.0% | |
| TCCATGAAAGATCACTTACG+TGG | + | chr4_4:36803492-36803511 | None:intergenic | 40.0% | |
| !! | TGGACATTTTGACATGTCAC+AGG | - | chr4_4:36803508-36803527 | Msa0679250:CDS | 40.0% |
| GTGAAGACTGAACATATCTG+TGG | - | chr4_4:36803835-36803854 | Msa0679250:intron | 40.0% | |
| AGACTGAACATATCTGTGGA+AGG | - | chr4_4:36803839-36803858 | Msa0679250:intron | 40.0% | |
| TGAATCAACATCGACATCGT+TGG | + | chr4_4:36804004-36804023 | None:intergenic | 40.0% | |
| !! | GATGTCGATGTTGATTCAGA+AGG | - | chr4_4:36804006-36804025 | Msa0679250:intron | 40.0% |
| GCAGTTCTATTTATCAGAGG+AGG | - | chr4_4:36804049-36804068 | Msa0679250:intron | 40.0% | |
| AACGTGTGAGAACTGTATGA+AGG | - | chr4_4:36804174-36804193 | Msa0679250:intron | 40.0% | |
| ACGTGTGAGAACTGTATGAA+GGG | - | chr4_4:36804175-36804194 | Msa0679250:intron | 40.0% | |
| ACCTGCATATGTAAGTTTCG+TGG | - | chr4_4:36804226-36804245 | Msa0679250:intron | 40.0% | |
| TCCACGAAACTTACATATGC+AGG | + | chr4_4:36804230-36804249 | None:intergenic | 40.0% | |
| ! | TTCATGCAGCTGGTATTTTC+CGG | - | chr4_4:36804454-36804473 | Msa0679250:intron | 40.0% |
| AGAAAACCACTGTTCTAGTG+AGG | - | chr4_4:36804518-36804537 | Msa0679250:intron | 40.0% | |
| AACATTCCTCACTAGAACAG+TGG | + | chr4_4:36804527-36804546 | None:intergenic | 40.0% | |
| GGCATTTCCTTAAGCAAAGA+TGG | - | chr4_4:36804559-36804578 | Msa0679250:intron | 40.0% | |
| GAAGGAACCATCTTTGCTTA+AGG | + | chr4_4:36804569-36804588 | None:intergenic | 40.0% | |
| CCTCCTAGTTAGTACTCTTA+CGG | - | chr4_4:36804746-36804765 | Msa0679250:intron | 40.0% | |
| !! | ACACCGTAAGAGTACTAACT+AGG | + | chr4_4:36804752-36804771 | None:intergenic | 40.0% |
| TGGTTAAAAGGAGAAAAGGC+TGG | - | chr4_4:36805056-36805075 | Msa0679250:intron | 40.0% | |
| GGTTAAAAGGAGAAAAGGCT+GGG | - | chr4_4:36805057-36805076 | Msa0679250:intron | 40.0% | |
| TTCATTCACCCTCACATTGT+CGG | + | chr4_4:36805117-36805136 | None:intergenic | 40.0% | |
| AATGTGAGGGTGAATGAAGA+TGG | - | chr4_4:36805119-36805138 | Msa0679250:CDS | 40.0% | |
| !! | TGAAGATGGTGATTTTTGGG+TGG | - | chr4_4:36805133-36805152 | Msa0679250:CDS | 40.0% |
| CAATACCTGTTTCAAATCGG+AGG | - | chr4_4:36805251-36805270 | Msa0679250:CDS | 40.0% | |
| AGTGAAGTGGAAGAGAAAGA+TGG | - | chr4_4:36805365-36805384 | Msa0679250:CDS | 40.0% | |
| GTGATAGAGCTGAAGATCAA+AGG | + | chr4_4:36805460-36805479 | None:intergenic | 40.0% | |
| TTGATCTTCAGCTCTATCAC+AGG | - | chr4_4:36805460-36805479 | Msa0679250:five_prime_UTR | 40.0% | |
| AATGTACCTTGAGTTCTTGG+TGG | - | chr4_4:36805509-36805528 | Msa0679250:five_prime_UTR | 40.0% | |
| TTAGGAACCTCAGACCAATC+AGG | + | chr4_4:36802200-36802219 | None:intergenic | 45.0% | |
| AGCATTGTGTTTGACCCTCT+TGG | - | chr4_4:36802290-36802309 | Msa0679250:CDS | 45.0% | |
| TATAAGGTCCACGACCAAGA+GGG | + | chr4_4:36802307-36802326 | None:intergenic | 45.0% | |
| CCATCAGCAACACCAGTATA+AGG | + | chr4_4:36802323-36802342 | None:intergenic | 45.0% | |
| !! | CCTTATACTGGTGTTGCTGA+TGG | - | chr4_4:36802320-36802339 | Msa0679250:CDS | 45.0% |
| GGCATCACAATTCCATTACC+AGG | - | chr4_4:36802409-36802428 | Msa0679250:CDS | 45.0% | |
| TCAATGATCGACTAATCCGG+GGG | - | chr4_4:36802541-36802560 | Msa0679250:intron | 45.0% | |
| CAACACTAGGTCAACTCATG+TGG | - | chr4_4:36802633-36802652 | Msa0679250:intron | 45.0% | |
| ! | AGACTGTTTGGGAGAGCATA+TGG | + | chr4_4:36803097-36803116 | None:intergenic | 45.0% |
| AGAACATAGAGGTTGGACTG+AGG | - | chr4_4:36803373-36803392 | Msa0679250:intron | 45.0% | |
| GCCACGTAAGTGATCTTTCA+TGG | - | chr4_4:36803488-36803507 | Msa0679250:CDS | 45.0% | |
| TTGACATGTCACAGGCTAAG+TGG | - | chr4_4:36803516-36803535 | Msa0679250:CDS | 45.0% | |
| TGACATGTCACAGGCTAAGT+GGG | - | chr4_4:36803517-36803536 | Msa0679250:CDS | 45.0% | |
| ACATATCTGTGGAAGGCCTT+TGG | - | chr4_4:36803846-36803865 | Msa0679250:intron | 45.0% | |
| CATATCTGTGGAAGGCCTTT+GGG | - | chr4_4:36803847-36803866 | Msa0679250:intron | 45.0% | |
| TGCATATCTTGGGCTGTTGA+AGG | - | chr4_4:36803912-36803931 | Msa0679250:intron | 45.0% | |
| ATATCTTGGGCTGTTGAAGG+TGG | - | chr4_4:36803915-36803934 | Msa0679250:intron | 45.0% | |
| TATCTTGGGCTGTTGAAGGT+GGG | - | chr4_4:36803916-36803935 | Msa0679250:intron | 45.0% | |
| AGATGTTGCTAAACCTCCCT+CGG | + | chr4_4:36803944-36803963 | None:intergenic | 45.0% | |
| AGCAACATCTCTTGCAACTG+AGG | - | chr4_4:36803954-36803973 | Msa0679250:intron | 45.0% | |
| ACAGTTCTCACACGTTTCCA+AGG | + | chr4_4:36804170-36804189 | None:intergenic | 45.0% | |
| GCAGGTTAAGTGCCATCTTA+AGG | + | chr4_4:36804212-36804231 | None:intergenic | 45.0% | |
| GTACAGGAATTTCATGCAGC+TGG | - | chr4_4:36804444-36804463 | Msa0679250:intron | 45.0% | |
| ! | TCATGCAGCTGGTATTTTCC+GGG | - | chr4_4:36804455-36804474 | Msa0679250:intron | 45.0% |
| ! | GTATTTTCCGGGGATGATAG+TGG | - | chr4_4:36804466-36804485 | Msa0679250:intron | 45.0% |
| AACCTTTCCACTATCATCCC+CGG | + | chr4_4:36804476-36804495 | None:intergenic | 45.0% | |
| TTTGTGAAGGGTCTATTGGC+AGG | - | chr4_4:36804596-36804615 | Msa0679250:intron | 45.0% | |
| GACAGCTAGCTAAAGAGGTA+AGG | + | chr4_4:36804637-36804656 | None:intergenic | 45.0% | |
| !! | CCGTAAGAGTACTAACTAGG+AGG | + | chr4_4:36804749-36804768 | None:intergenic | 45.0% |
| TTTCAAACAGGCAGCTCGAT+TGG | + | chr4_4:36804785-36804804 | None:intergenic | 45.0% | |
| GAGATCTTAGCTATCCTACC+TGG | - | chr4_4:36805086-36805105 | Msa0679250:intron | 45.0% | |
| TCATTCACCCTCACATTGTC+GGG | + | chr4_4:36805116-36805135 | None:intergenic | 45.0% | |
| ! | GCTTACCTCCGATTTGAAAC+AGG | + | chr4_4:36805259-36805278 | None:intergenic | 45.0% |
| CAAATCGGAGGTAAGCAACA+TGG | - | chr4_4:36805263-36805282 | Msa0679250:CDS | 45.0% | |
| CAGATATTGGAGGACAGTGA+GGG | - | chr4_4:36805323-36805342 | Msa0679250:CDS | 45.0% | |
| TGTTAGAGCTGTGAGTGAAG+TGG | - | chr4_4:36805352-36805371 | Msa0679250:CDS | 45.0% | |
| ATGGAAGCAAAGCTCATCTC+AGG | + | chr4_4:36805544-36805563 | None:intergenic | 45.0% | |
| !! | TGACATGCCTGATTGGTCTG+AGG | - | chr4_4:36802190-36802209 | Msa0679250:CDS | 50.0% |
| GGGTCAAACACAATGCTCTC+AGG | + | chr4_4:36802287-36802306 | None:intergenic | 50.0% | |
| GTATAAGGTCCACGACCAAG+AGG | + | chr4_4:36802308-36802327 | None:intergenic | 50.0% | |
| CTTGGTCGTGGACCTTATAC+TGG | - | chr4_4:36802308-36802327 | Msa0679250:CDS | 50.0% | |
| TTGCTTACACTTCGCCCAAC+AGG | - | chr4_4:36802381-36802400 | Msa0679250:CDS | 50.0% | |
| TTACACTTCGCCCAACAGGT+AGG | - | chr4_4:36802385-36802404 | Msa0679250:CDS | 50.0% | |
| TGTGATGCCACCTACCTGTT+GGG | + | chr4_4:36802398-36802417 | None:intergenic | 50.0% | |
| TTGTGATGCCACCTACCTGT+TGG | + | chr4_4:36802399-36802418 | None:intergenic | 50.0% | |
| !! | CCAATTTCTGAGATTGCCCC+CGG | + | chr4_4:36802560-36802579 | None:intergenic | 50.0% |
| CTTGGAGTATGCTCCTCTCA+AGG | + | chr4_4:36802601-36802620 | None:intergenic | 50.0% | |
| ! | CTTGAGAGGAGCATACTCCA+AGG | - | chr4_4:36802599-36802618 | Msa0679250:intron | 50.0% |
| CCAGGATAGTCTACGAAAGC+TGG | + | chr4_4:36803033-36803052 | None:intergenic | 50.0% | |
| CCAGCTTTCGTAGACTATCC+TGG | - | chr4_4:36803030-36803049 | Msa0679250:CDS | 50.0% | |
| GGTTTGGGGGAAGAACATAG+AGG | - | chr4_4:36803362-36803381 | Msa0679250:intron | 50.0% | |
| TGGGGGAAGAACATAGAGGT+TGG | - | chr4_4:36803366-36803385 | Msa0679250:intron | 50.0% | |
| AGGCTAAGTGGGATAGCTCA+CGG | - | chr4_4:36803528-36803547 | Msa0679250:CDS | 50.0% | |
| ATCTTGGGCTGTTGAAGGTG+GGG | - | chr4_4:36803917-36803936 | Msa0679250:intron | 50.0% | |
| GATGTTGCTAAACCTCCCTC+GGG | + | chr4_4:36803943-36803962 | None:intergenic | 50.0% | |
| TCTCTTGCAACTGAGGCTGA+AGG | - | chr4_4:36803961-36803980 | Msa0679250:intron | 50.0% | |
| CTCTTGCAACTGAGGCTGAA+GGG | - | chr4_4:36803962-36803981 | Msa0679250:intron | 50.0% | |
| TCTTGCAACTGAGGCTGAAG+GGG | - | chr4_4:36803963-36803982 | Msa0679250:intron | 50.0% | |
| ! | CATGCAGCTGGTATTTTCCG+GGG | - | chr4_4:36804456-36804475 | Msa0679250:intron | 50.0% |
| !! | TTCCGGGGATGATAGTGGAA+AGG | - | chr4_4:36804471-36804490 | Msa0679250:intron | 50.0% |
| AGGAGAAAAGGCTGGGACAT+CGG | - | chr4_4:36805064-36805083 | Msa0679250:intron | 50.0% | |
| GCAGATATTGGAGGACAGTG+AGG | - | chr4_4:36805322-36805341 | Msa0679250:CDS | 50.0% | |
| GAGGTAGCAAGCAACGTGTG+TGG | + | chr4_4:36801919-36801938 | None:intergenic | 55.0% | |
| GTGTTTGACCCTCTTGGTCG+TGG | - | chr4_4:36802296-36802315 | Msa0679250:CDS | 55.0% | |
| CCGGGGGCAATCTCAGAAAT+TGG | - | chr4_4:36802557-36802576 | Msa0679250:intron | 55.0% | |
| TGGAGCTCCCGACAATGTGA+GGG | - | chr4_4:36805106-36805125 | Msa0679250:intron | 55.0% | |
| CACTTCGCCCAACAGGTAGG+TGG | - | chr4_4:36802388-36802407 | Msa0679250:CDS | 60.0% | |
| CATTGTCGGGAGCTCCAGGT+AGG | + | chr4_4:36805103-36805122 | None:intergenic | 60.0% | |
| CTCACATTGTCGGGAGCTCC+AGG | + | chr4_4:36805107-36805126 | None:intergenic | 60.0% | |
| CTGGAGCTCCCGACAATGTG+AGG | - | chr4_4:36805105-36805124 | Msa0679250:intron | 60.0% | |
| CTGTTGAAGGTGGGGCCCGA+GGG | - | chr4_4:36803925-36803944 | Msa0679250:intron | 65.0% | |
| GCTGTTGAAGGTGGGGCCCG+AGG | - | chr4_4:36803924-36803943 | Msa0679250:intron | 70.0% | |
| TTGAAGGTGGGGCCCGAGGG+AGG | - | chr4_4:36803928-36803947 | Msa0679250:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 36801875 | 36805639 | 36801875 | ID=Msa0679250;Name=Msa0679250 |
| chr4_4 | mRNA | 36801875 | 36805639 | 36801875 | ID=Msa0679250-mRNA-1;Parent=Msa0679250;Name=Msa0679250-mRNA-1;_AED=0.04;_eAED=0.04;_QI=199|1|1|1|1|1|4|197|391 |
| chr4_4 | exon | 36801875 | 36802471 | 36801875 | ID=Msa0679250-mRNA-1:exon:8683;Parent=Msa0679250-mRNA-1 |
| chr4_4 | exon | 36802897 | 36803064 | 36802897 | ID=Msa0679250-mRNA-1:exon:8682;Parent=Msa0679250-mRNA-1 |
| chr4_4 | exon | 36803444 | 36803722 | 36803444 | ID=Msa0679250-mRNA-1:exon:8681;Parent=Msa0679250-mRNA-1 |
| chr4_4 | exon | 36805112 | 36805639 | 36805112 | ID=Msa0679250-mRNA-1:exon:8680;Parent=Msa0679250-mRNA-1 |
| chr4_4 | five_prime_UTR | 36805441 | 36805639 | 36805441 | ID=Msa0679250-mRNA-1:five_prime_utr;Parent=Msa0679250-mRNA-1 |
| chr4_4 | CDS | 36805112 | 36805440 | 36805112 | ID=Msa0679250-mRNA-1:cds;Parent=Msa0679250-mRNA-1 |
| chr4_4 | CDS | 36803444 | 36803722 | 36803444 | ID=Msa0679250-mRNA-1:cds;Parent=Msa0679250-mRNA-1 |
| chr4_4 | CDS | 36802897 | 36803064 | 36802897 | ID=Msa0679250-mRNA-1:cds;Parent=Msa0679250-mRNA-1 |
| chr4_4 | CDS | 36802072 | 36802471 | 36802072 | ID=Msa0679250-mRNA-1:cds;Parent=Msa0679250-mRNA-1 |
| chr4_4 | three_prime_UTR | 36801875 | 36802071 | 36801875 | ID=Msa0679250-mRNA-1:three_prime_utr;Parent=Msa0679250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
