Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1421700 | sp|Q8VWF6|SSL3_ARATH | 71.762 | 386 | 106 | 2 | 7 | 391 | 6 | 389 | 0.0 | 590 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1421700 | A0A072UIZ0 | 97.187 | 391 | 11 | 0 | 1 | 391 | 1 | 391 | 0.0 | 786 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0057590 | Msa1421700 | 0.808292 | 3.327451e-50 | -8.615850e-47 |
| Msa0098470 | Msa1421700 | 0.808535 | 2.952623e-50 | -8.615850e-47 |
| Msa1400610 | Msa1421700 | -0.804887 | 1.741173e-49 | -8.615850e-47 |
| Msa1405220 | Msa1421700 | 0.803720 | 3.046111e-49 | -8.615850e-47 |
| Msa1421460 | Msa1421700 | 0.808548 | 2.933511e-50 | -8.615850e-47 |
| Msa0679250 | Msa1421700 | 0.812936 | 3.298315e-51 | -8.615850e-47 |
| Msa0386920 | Msa1421700 | 0.800698 | 1.275577e-48 | -8.615850e-47 |
| Msa1208890 | Msa1421700 | -0.801817 | 7.526980e-49 | -8.615850e-47 |
| Msa1219000 | Msa1421700 | 0.816188 | 6.288513e-52 | -8.615850e-47 |
| Msa0544760 | Msa1421700 | 0.819191 | 1.321872e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1421700 | MtrunA17_Chr4g0025341 | 97.187 | 391 | 11 | 0 | 1 | 391 | 1 | 391 | 0.0 | 786 |
| Msa1421700 | MtrunA17_Chr2g0322241 | 79.082 | 392 | 81 | 1 | 1 | 391 | 4 | 395 | 0.0 | 650 |
| Msa1421700 | MtrunA17_Chr7g0256581 | 51.765 | 340 | 153 | 5 | 55 | 391 | 38 | 369 | 7.23e-118 | 347 |
| Msa1421700 | MtrunA17_Chr7g0256571 | 50.000 | 352 | 162 | 7 | 44 | 391 | 28 | 369 | 1.76e-115 | 341 |
| Msa1421700 | MtrunA17_Chr7g0256561 | 48.974 | 341 | 124 | 6 | 54 | 391 | 42 | 335 | 8.17e-104 | 310 |
| Msa1421700 | MtrunA17_Chr2g0329531 | 42.711 | 391 | 214 | 6 | 5 | 388 | 16 | 403 | 3.64e-101 | 305 |
| Msa1421700 | MtrunA17_Chr5g0443561 | 48.225 | 338 | 123 | 6 | 57 | 391 | 35 | 323 | 9.60e-99 | 296 |
| Msa1421700 | MtrunA17_Chr7g0256591 | 44.277 | 332 | 176 | 7 | 66 | 389 | 54 | 384 | 7.05e-94 | 286 |
| Msa1421700 | MtrunA17_Chr7g0256601 | 43.598 | 328 | 177 | 7 | 70 | 389 | 88 | 415 | 3.32e-90 | 278 |
| Msa1421700 | MtrunA17_Chr4g0062001 | 38.192 | 343 | 172 | 10 | 58 | 389 | 21 | 334 | 6.52e-73 | 231 |
| Msa1421700 | MtrunA17_Chr8g0376581 | 38.053 | 339 | 173 | 9 | 56 | 389 | 24 | 330 | 3.72e-71 | 226 |
| Msa1421700 | MtrunA17_Chr4g0062021 | 38.348 | 339 | 165 | 11 | 64 | 389 | 39 | 346 | 1.12e-64 | 210 |
| Msa1421700 | MtrunA17_Chr4g0062031 | 37.273 | 330 | 158 | 7 | 68 | 389 | 36 | 324 | 8.21e-64 | 207 |
| Msa1421700 | MtrunA17_Chr2g0307721 | 38.318 | 321 | 161 | 7 | 68 | 382 | 45 | 334 | 1.42e-59 | 206 |
| Msa1421700 | MtrunA17_Chr2g0307721 | 36.280 | 328 | 172 | 7 | 67 | 388 | 496 | 792 | 1.26e-55 | 195 |
| Msa1421700 | MtrunA17_Chr2g0307721 | 50.000 | 82 | 40 | 1 | 123 | 203 | 340 | 421 | 1.52e-14 | 75.5 |
| Msa1421700 | MtrunA17_Chr8g0370761 | 32.190 | 379 | 211 | 10 | 10 | 386 | 27 | 361 | 1.05e-47 | 166 |
| Msa1421700 | MtrunA17_Chr8g0370791 | 31.565 | 377 | 216 | 9 | 10 | 386 | 27 | 361 | 6.62e-45 | 159 |
| Msa1421700 | MtrunA17_Chr2g0300841 | 31.679 | 262 | 151 | 5 | 142 | 391 | 112 | 357 | 2.85e-37 | 138 |
| Msa1421700 | MtrunA17_Chr8g0370771 | 33.333 | 234 | 146 | 4 | 154 | 387 | 4 | 227 | 5.17e-35 | 129 |
| Msa1421700 | MtrunA17_Chr2g0300851 | 29.710 | 276 | 165 | 5 | 128 | 391 | 91 | 349 | 1.55e-34 | 130 |
| Msa1421700 | MtrunA17_Chr4g0020271 | 33.495 | 206 | 112 | 3 | 179 | 383 | 2 | 183 | 1.90e-33 | 124 |
| Msa1421700 | MtrunA17_Chr2g0300861 | 30.682 | 264 | 170 | 5 | 128 | 387 | 110 | 364 | 6.04e-33 | 127 |
| Msa1421700 | MtrunA17_Chr4g0062051 | 42.553 | 141 | 71 | 4 | 68 | 203 | 40 | 175 | 8.75e-26 | 102 |
| Msa1421700 | MtrunA17_Chr4g0061871 | 43.299 | 97 | 55 | 0 | 203 | 299 | 18 | 114 | 7.47e-24 | 95.9 |
| Msa1421700 | MtrunA17_Chr8g0370801 | 37.037 | 108 | 65 | 1 | 153 | 257 | 2 | 109 | 1.11e-19 | 83.6 |
| Msa1421700 | MtrunA17_Chr4g0062061 | 27.027 | 148 | 76 | 1 | 242 | 389 | 4 | 119 | 2.03e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1421700 | AT1G08470.1 | 71.762 | 386 | 106 | 2 | 7 | 391 | 6 | 389 | 0.0 | 590 |
| Msa1421700 | AT5G22020.3 | 67.819 | 376 | 118 | 2 | 17 | 391 | 22 | 395 | 0.0 | 550 |
| Msa1421700 | AT5G22020.1 | 67.819 | 376 | 118 | 2 | 17 | 391 | 22 | 395 | 0.0 | 550 |
| Msa1421700 | AT5G22020.2 | 67.819 | 376 | 118 | 2 | 17 | 391 | 22 | 395 | 0.0 | 550 |
| Msa1421700 | AT3G57030.1 | 50.144 | 347 | 164 | 4 | 48 | 391 | 34 | 374 | 2.09e-120 | 354 |
| Msa1421700 | AT3G59530.3 | 43.434 | 396 | 202 | 7 | 1 | 388 | 13 | 394 | 1.47e-103 | 312 |
| Msa1421700 | AT3G59530.2 | 43.434 | 396 | 202 | 7 | 1 | 388 | 13 | 394 | 1.47e-103 | 312 |
| Msa1421700 | AT3G59530.1 | 43.434 | 396 | 202 | 7 | 1 | 388 | 13 | 394 | 1.47e-103 | 312 |
| Msa1421700 | AT3G57010.1 | 48.160 | 326 | 154 | 6 | 68 | 388 | 52 | 367 | 6.60e-100 | 301 |
| Msa1421700 | AT3G57020.1 | 48.485 | 330 | 147 | 8 | 68 | 388 | 51 | 366 | 1.18e-95 | 290 |
| Msa1421700 | AT2G41300.1 | 45.741 | 317 | 158 | 5 | 76 | 388 | 84 | 390 | 4.01e-92 | 282 |
| Msa1421700 | AT3G57020.2 | 46.646 | 328 | 142 | 7 | 68 | 388 | 51 | 352 | 1.37e-89 | 275 |
| Msa1421700 | AT2G41290.1 | 42.061 | 359 | 189 | 9 | 46 | 391 | 24 | 376 | 2.14e-86 | 267 |
| Msa1421700 | AT1G74010.1 | 39.039 | 333 | 156 | 11 | 66 | 391 | 33 | 325 | 3.16e-54 | 182 |
| Msa1421700 | AT1G74000.1 | 37.690 | 329 | 159 | 10 | 70 | 391 | 40 | 329 | 1.51e-53 | 181 |
| Msa1421700 | AT1G74020.1 | 35.152 | 330 | 168 | 9 | 69 | 391 | 37 | 327 | 1.11e-50 | 173 |
| Msa1421700 | AT3G51440.1 | 32.955 | 264 | 152 | 5 | 56 | 317 | 55 | 295 | 2.02e-34 | 131 |
| Msa1421700 | AT3G51420.1 | 29.254 | 335 | 202 | 9 | 56 | 387 | 55 | 357 | 8.95e-34 | 129 |
| Msa1421700 | AT3G51430.1 | 30.476 | 315 | 183 | 10 | 7 | 317 | 13 | 295 | 7.33e-33 | 127 |
| Msa1421700 | AT3G51450.1 | 29.545 | 308 | 187 | 9 | 10 | 317 | 18 | 295 | 8.68e-32 | 124 |
| Msa1421700 | AT3G51430.2 | 30.476 | 315 | 181 | 11 | 7 | 317 | 13 | 293 | 1.21e-31 | 123 |
Find 114 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACGTAAATATTGGTTAAA+AGG | 0.214137 | tig0025293:-6970 | Msa1421700:CDS |
| TGTTCTGGAATGGACTTTCT+TGG | 0.232101 | tig0025293:-9583 | Msa1421700:CDS |
| CCCTGAATTTGAATCCAAAA+AGG | 0.232481 | tig0025293:-9768 | Msa1421700:CDS |
| TTATGTTCATCTCTATCTTT+AGG | 0.242130 | tig0025293:+9719 | None:intergenic |
| AGTTTATAAACTGCAATAAA+AGG | 0.276571 | tig0025293:+6598 | None:intergenic |
| TACATTGCGGATGCATATCT+TGG | 0.338108 | tig0025293:-8076 | Msa1421700:CDS |
| TGTGTAGATTACGTAAATAT+TGG | 0.346326 | tig0025293:-6978 | Msa1421700:intron |
| CTTGGTCGTGGACCTTATAC+TGG | 0.347823 | tig0025293:-9626 | Msa1421700:CDS |
| TTGCTTAAGGAAATGCCATT+TGG | 0.348960 | tig0025293:+7450 | None:intergenic |
| CATATCTGTGGAAGGCCTTT+GGG | 0.349781 | tig0025293:-8130 | Msa1421700:CDS |
| ACATATCTGTGGAAGGCCTT+TGG | 0.349805 | tig0025293:-8131 | Msa1421700:CDS |
| TATTGATTCTTTGTTGGTAT+TGG | 0.352926 | tig0025293:+6781 | None:intergenic |
| TCAGTCTTCACATAACTAAA+TGG | 0.356858 | tig0025293:+8154 | None:intergenic |
| GAAGGAACCATCTTTGCTTA+AGG | 0.369652 | tig0025293:+7437 | None:intergenic |
| ACAGTGGTTTCCTTTGTTGC+AGG | 0.372635 | tig0025293:+7495 | None:intergenic |
| GCTATGGTACTGTGCTGAAA+TGG | 0.374685 | tig0025293:+9797 | None:intergenic |
| GTTCTGGAATGGACTTTCTT+GGG | 0.382508 | tig0025293:-9582 | Msa1421700:CDS |
| TGCTTAAGGAAATGCCATTT+GGG | 0.387701 | tig0025293:+7451 | None:intergenic |
| AGCAAACAAGAGAAAGATAA+TGG | 0.392575 | tig0025293:+9838 | None:intergenic |
| ATCTGCAGTAATTTACCTTC+AGG | 0.399510 | tig0025293:+6709 | None:intergenic |
| GGCATTTCCTTAAGCAAAGA+TGG | 0.401090 | tig0025293:-7444 | Msa1421700:CDS |
| AGTATAGCTTTCCTTATCCT+TGG | 0.402497 | tig0025293:+6811 | None:intergenic |
| GTTAGGTTTCAGTTGAATAG+TGG | 0.407115 | tig0025293:+9976 | None:intergenic |
| GCTTACCTCCGATTTGAAAC+AGG | 0.409854 | tig0025293:+6758 | None:intergenic |
| GAATGAATAACGTGTTTGTT+AGG | 0.415511 | tig0025293:+9959 | None:intergenic |
| AGGTAAATTACTGCAGATAT+TGG | 0.424873 | tig0025293:-6704 | Msa1421700:CDS |
| ACATCGTTGGTAAATCTTAG+AGG | 0.430160 | tig0025293:+7989 | None:intergenic |
| TCATTCACCCTCACATTGTC+GGG | 0.430646 | tig0025293:+6901 | None:intergenic |
| CCATCAGCAACACCAGTATA+AGG | 0.434274 | tig0025293:+9614 | None:intergenic |
| AACAGGTATTGATTCTTTGT+TGG | 0.434766 | tig0025293:+6775 | None:intergenic |
| CAGAGCTACTCCTTTACATT+GGG | 0.444819 | tig0025293:-10046 | Msa1421700:five_prime_UTR |
| AAAAGGTTGACATGCCTGAT+TGG | 0.446198 | tig0025293:-9751 | Msa1421700:CDS |
| CTGGTTTATATCCAAGGATA+AGG | 0.446658 | tig0025293:-6822 | Msa1421700:CDS |
| CTATGGTACTGTGCTGAAAT+GGG | 0.451510 | tig0025293:+9798 | None:intergenic |
| CTAAGATTTGACAAGAAAAC+AGG | 0.452434 | tig0025293:-8106 | Msa1421700:CDS |
| TTCATTCACCCTCACATTGT+CGG | 0.455467 | tig0025293:+6900 | None:intergenic |
| CAACGATGTCGATGTTGATT+CGG | 0.458797 | tig0025293:-7975 | Msa1421700:CDS |
| TTGGAAGCAATGCTCATCTC+AGG | 0.459368 | tig0025293:+6473 | None:intergenic |
| AAATGGTGTCGCATTTGCTA+TGG | 0.459583 | tig0025293:+8171 | None:intergenic |
| TTGCTTACACTTCGCCCAAC+AGG | 0.463778 | tig0025293:-9553 | Msa1421700:intron |
| AATGGTGTCGCATTTGCTAT+GGG | 0.465415 | tig0025293:+8172 | None:intergenic |
| TTTGTGAAGGGTCTATTGGC+AGG | 0.466385 | tig0025293:-7407 | Msa1421700:intron |
| GAAATATAACCCTGCAACAA+AGG | 0.466614 | tig0025293:-7505 | Msa1421700:CDS |
| AAAGATGGTCAACTTTGGAT+TGG | 0.469113 | tig0025293:-6634 | Msa1421700:CDS |
| AATCAATACCTGTTTCAAAT+CGG | 0.471637 | tig0025293:-6766 | Msa1421700:CDS |
| CTCACATTGTCGGGAGCTCC+AGG | 0.471745 | tig0025293:+6910 | None:intergenic |
| AATGTACCTCAAGTTATCAT+TGG | 0.473815 | tig0025293:-6505 | Msa1421700:three_prime_UTR |
| AAGAGAAAGATGGTCAACTT+TGG | 0.483380 | tig0025293:-6639 | Msa1421700:CDS |
| TGCATATCTTGGGCTGTTGA+AGG | 0.484193 | tig0025293:-8065 | Msa1421700:CDS |
| ATCTTGGGCTGTTGAAGGTA+GGG | 0.491529 | tig0025293:-8060 | Msa1421700:CDS |
| TATCTTGGGCTGTTGAAGGT+AGG | 0.494211 | tig0025293:-8061 | Msa1421700:CDS |
| AGATGTTGCTAAACCTCCCT+CGG | 0.499939 | tig0025293:+8036 | None:intergenic |
| GTACAGGAATTTCATGCAGC+TGG | 0.501498 | tig0025293:-7559 | Msa1421700:intron |
| ATATTGGTTAAAAGGAGAAA+AGG | 0.502297 | tig0025293:-6962 | Msa1421700:CDS |
| CTCTTGCAACTGAGGCTGAA+GGG | 0.504563 | tig0025293:-8015 | Msa1421700:CDS |
| TTAGGAACCTCAGACCAATC+AGG | 0.507701 | tig0025293:+9737 | None:intergenic |
| TGGTTAAAAGGAGAAAAGGC+TGG | 0.512231 | tig0025293:-6958 | Msa1421700:CDS |
| ATCTATGTTTCCCAATGTAA+AGG | 0.512373 | tig0025293:+10036 | None:intergenic |
| ACAGAGCTACTCCTTTACAT+TGG | 0.516355 | tig0025293:-10047 | Msa1421700:five_prime_UTR |
| GCTGTTGAAGGTAGGGCCCG+AGG | 0.522215 | tig0025293:-8053 | Msa1421700:CDS |
| AGGAGAAAAGGCTGGGACAT+CGG | 0.522741 | tig0025293:-6950 | Msa1421700:CDS |
| TGTTAGAGCTGTGAGTGAAG+TGG | 0.524832 | tig0025293:-6662 | Msa1421700:CDS |
| CAGTGGTTTCCTTTGTTGCA+GGG | 0.526569 | tig0025293:+7496 | None:intergenic |
| AAATTCAGGGAAATTTGCTA+TGG | 0.527486 | tig0025293:+9781 | None:intergenic |
| TTAGGTTTCAGTTGAATAGT+GGG | 0.530778 | tig0025293:+9977 | None:intergenic |
| CTCTTGTTTGCTCTATACTG+TGG | 0.532134 | tig0025293:-9827 | Msa1421700:CDS |
| CTGTTGAAGGTAGGGCCCGA+GGG | 0.532776 | tig0025293:-8052 | Msa1421700:CDS |
| CCTTATACTGGTGTTGCTGA+TGG | 0.535929 | tig0025293:-9614 | Msa1421700:CDS |
| TTGTCAAATCTTAGTCCCAA+AGG | 0.536364 | tig0025293:+8115 | None:intergenic |
| CGAATCAACATCGACATCGT+TGG | 0.539337 | tig0025293:+7976 | None:intergenic |
| AGGAATGTTCAATTCCCAAA+TGG | 0.546952 | tig0025293:-7465 | Msa1421700:CDS |
| AGTTGAATAGTGGGTAGGTG+AGG | 0.549579 | tig0025293:+9986 | None:intergenic |
| AACCTTGCCACTATCATCCC+CGG | 0.549832 | tig0025293:+7530 | None:intergenic |
| ACTATACTGGTTTATATCCA+AGG | 0.552390 | tig0025293:-6828 | Msa1421700:CDS |
| AACATTCCTCACTAGAACAG+TGG | 0.558934 | tig0025293:+7479 | None:intergenic |
| ACATTGCGGATGCATATCTT+GGG | 0.560330 | tig0025293:-8075 | Msa1421700:CDS |
| GTTTCAGTTGAATAGTGGGT+AGG | 0.563248 | tig0025293:+9981 | None:intergenic |
| GATGTTGCTAAACCTCCCTC+GGG | 0.566662 | tig0025293:+8037 | None:intergenic |
| TCTTGCAACTGAGGCTGAAG+GGG | 0.566753 | tig0025293:-8014 | Msa1421700:CDS |
| TAAATTACTGCAGATATTGG+AGG | 0.568473 | tig0025293:-6701 | Msa1421700:CDS |
| AGCAACATCTCTTGCAACTG+AGG | 0.569286 | tig0025293:-8023 | Msa1421700:CDS |
| TCTCTTGCAACTGAGGCTGA+AGG | 0.569638 | tig0025293:-8016 | Msa1421700:CDS |
| GAGATCTTAGCTATCCTACC+TGG | 0.569639 | tig0025293:-6928 | Msa1421700:CDS |
| TTCCGGGGATGATAGTGGCA+AGG | 0.574658 | tig0025293:-7532 | Msa1421700:CDS |
| CAAGAGAAAGATAATGGCAA+AGG | 0.575699 | tig0025293:+9844 | None:intergenic |
| AGAGTCATGATGTTATTGAA+AGG | 0.575842 | tig0025293:+9875 | None:intergenic |
| GGTTAAAAGGAGAAAAGGCT+GGG | 0.576153 | tig0025293:-6957 | Msa1421700:CDS |
| GTCATAGACCAGAAGATCAA+AGG | 0.582866 | tig0025293:+6557 | None:intergenic |
| CTGGAGCTCCCGACAATGTG+AGG | 0.585247 | tig0025293:-6909 | Msa1421700:CDS |
| AGGTTGAAATGTGAATGTTA+TGG | 0.598072 | tig0025293:+9895 | None:intergenic |
| CAATACCTGTTTCAAATCGG+AGG | 0.600119 | tig0025293:-6763 | Msa1421700:CDS |
| GCAGTTCTATTTATCAGAGG+AGG | 0.604762 | tig0025293:-7928 | Msa1421700:intron |
| TTGAAGGTAGGGCCCGAGGG+AGG | 0.610411 | tig0025293:-8049 | Msa1421700:CDS |
| CAAATCGGAGGTAAGCAACA+TGG | 0.612312 | tig0025293:-6751 | Msa1421700:CDS |
| AAAGCAGTTCTATTTATCAG+AGG | 0.613913 | tig0025293:-7931 | Msa1421700:CDS |
| TGGAGCTCCCGACAATGTGA+GGG | 0.616670 | tig0025293:-6908 | Msa1421700:CDS |
| TGTGATGCAACCTACCTGTT+GGG | 0.617438 | tig0025293:+9539 | None:intergenic |
| TGACATGCCTGATTGGTCTG+AGG | 0.623043 | tig0025293:-9744 | Msa1421700:CDS |
| TCTATGCCAATGATAACTTG+AGG | 0.624609 | tig0025293:+6499 | None:intergenic |
| AGTGAAGTGGAAGAGAAAGA+TGG | 0.626890 | tig0025293:-6649 | Msa1421700:CDS |
| CAGATATTGGAGGACAGTGA+GGG | 0.630580 | tig0025293:-6691 | Msa1421700:CDS |
| GCAGATATTGGAGGACAGTG+AGG | 0.631429 | tig0025293:-6692 | Msa1421700:CDS |
| AATGTGAGGGTGAATGAAGA+TGG | 0.632486 | tig0025293:-6895 | Msa1421700:CDS |
| ATGGTGTCGCATTTGCTATG+GGG | 0.637686 | tig0025293:+8173 | None:intergenic |
| AGACTGAACATATCTGTGGA+AGG | 0.642076 | tig0025293:-8138 | Msa1421700:CDS |
| GAGGTAGCAAGCAACGTGTG+TGG | 0.645184 | tig0025293:+10005 | None:intergenic |
| AGGAAACCACTGTTCTAGTG+AGG | 0.648236 | tig0025293:-7485 | Msa1421700:CDS |
| CATTGTCGGGAGCTCCAGGT+AGG | 0.648945 | tig0025293:+6914 | None:intergenic |
| GATGTCGATGTTGATTCGGA+AGG | 0.659753 | tig0025293:-7971 | Msa1421700:CDS |
| ATTGTGAAGTATAGTCCTGA+AGG | 0.659981 | tig0025293:-6724 | Msa1421700:CDS |
| AACAGGTGAATTGTACATTG+CGG | 0.664284 | tig0025293:-8089 | Msa1421700:CDS |
| GTATAAGGTCCACGACCAAG+AGG | 0.671165 | tig0025293:+9629 | None:intergenic |
| TATAAGGTCCACGACCAAGA+GGG | 0.672876 | tig0025293:+9630 | None:intergenic |
| GTGAAGACTGAACATATCTG+TGG | 0.676259 | tig0025293:-8142 | Msa1421700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTAAAAGATTCATTT+TGG | + | tig0025293:8098-8117 | None:intergenic | 10.0% |
| !! | TAAACATTTATCATAACTTA+TGG | + | tig0025293:7294-7313 | None:intergenic | 15.0% |
| !! | TCAAATAATTCAATCTAAAT+AGG | - | tig0025293:7607-7626 | Msa1421700:intron | 15.0% |
| !! | ACTAATTAAGTAAAAGATAA+AGG | - | tig0025293:8128-8147 | Msa1421700:CDS | 15.0% |
| !! | TGTAAAATGTATTCAAATAA+AGG | - | tig0025293:8572-8591 | Msa1421700:intron | 15.0% |
| !! | TTTCAGAATTAAAAACTTAA+AGG | + | tig0025293:8812-8831 | None:intergenic | 15.0% |
| !! | AAGAAATTATTGAAATGAAA+AGG | + | tig0025293:9443-9462 | None:intergenic | 15.0% |
| !! | AATAACAAAAAAAGGAAATT+TGG | + | tig0025293:9992-10011 | None:intergenic | 15.0% |
| !! | ACTATGAATACATAGTATAT+AGG | + | tig0025293:7352-7371 | None:intergenic | 20.0% |
| !! | CAATAACAAAGTATAAAGTA+TGG | + | tig0025293:7634-7653 | None:intergenic | 20.0% |
| !!! | CATACTTTATACTTTGTTAT+TGG | - | tig0025293:7632-7651 | Msa1421700:intron | 20.0% |
| !! | TTTAATGAATATTCCAACTT+AGG | + | tig0025293:7738-7757 | None:intergenic | 20.0% |
| !! | ATTCATTACCATTTAATCAT+AGG | + | tig0025293:8211-8230 | None:intergenic | 20.0% |
| !!! | TTACGTAAATATTGGTTAAA+AGG | - | tig0025293:9473-9492 | Msa1421700:intron | 20.0% |
| !! | AGTTTATAAACTGCAATAAA+AGG | + | tig0025293:9848-9867 | None:intergenic | 20.0% |
| !! | CACATGTTAATAACAAAAAA+AGG | + | tig0025293:10000-10019 | None:intergenic | 20.0% |
| ! | TTATGTTCATCTCTATCTTT+AGG | + | tig0025293:6727-6746 | None:intergenic | 25.0% |
| !!! | TTCATGGGTTATTAGAATTT+TGG | - | tig0025293:7050-7069 | Msa1421700:intron | 25.0% |
| ! | TAAAAACTTGAGTGTTATCA+GGG | - | tig0025293:7104-7123 | Msa1421700:intron | 25.0% |
| !!! | AATCTCAAAAGTTTTAATGC+CGG | + | tig0025293:7155-7174 | None:intergenic | 25.0% |
| ! | AATATAACTAGATCCTAAGT+TGG | - | tig0025293:7722-7741 | Msa1421700:intron | 25.0% |
| ! | GAAAATCTCTAATTTCAGTT+AGG | + | tig0025293:7922-7941 | None:intergenic | 25.0% |
| !! | TTTTGCTAAAGCTTAGAAAT+AGG | + | tig0025293:8174-8193 | None:intergenic | 25.0% |
| !!! | GGAAGGAAATGTTTATTTTA+CGG | - | tig0025293:8489-8508 | Msa1421700:intron | 25.0% |
| !! | ACATTTTACACACAAAATGA+TGG | + | tig0025293:8562-8581 | None:intergenic | 25.0% |
| ! | CACAAAACTTATATATATGC+AGG | + | tig0025293:8665-8684 | None:intergenic | 25.0% |
| !! | CTGCATATATATAAGTTTTG+TGG | - | tig0025293:8663-8682 | Msa1421700:intron | 25.0% |
| !!! | CATATATATAAGTTTTGTGG+AGG | - | tig0025293:8666-8685 | Msa1421700:intron | 25.0% |
| !! | TATGCAAAGAAAGTACATAT+AGG | + | tig0025293:8760-8779 | None:intergenic | 25.0% |
| !! | AGCAGATAAAATTTTCAAAC+AGG | + | tig0025293:9224-9243 | None:intergenic | 25.0% |
| !! | AAAATTTTATCTGCTATAGC+AGG | - | tig0025293:9229-9248 | Msa1421700:intron | 25.0% |
| ! | AATTATTAAAGTGACACTTG+AGG | + | tig0025293:9416-9435 | None:intergenic | 25.0% |
| ! | TGTGTAGATTACGTAAATAT+TGG | - | tig0025293:9465-9484 | Msa1421700:intron | 25.0% |
| !! | ATATTGGTTAAAAGGAGAAA+AGG | - | tig0025293:9481-9500 | Msa1421700:intron | 25.0% |
| !! | TCTATGTTTTCATACTATAC+TGG | - | tig0025293:9602-9621 | Msa1421700:CDS | 25.0% |
| !!! | TATTGATTCTTTGTTGGTAT+TGG | + | tig0025293:9665-9684 | None:intergenic | 25.0% |
| ! | AATCAATACCTGTTTCAAAT+CGG | - | tig0025293:9677-9696 | Msa1421700:CDS | 25.0% |
| ATCTATGTTTCCCAATGTAA+AGG | + | tig0025293:6410-6429 | None:intergenic | 30.0% | |
| TTAGGTTTCAGTTGAATAGT+GGG | + | tig0025293:6469-6488 | None:intergenic | 30.0% | |
| GAATGAATAACGTGTTTGTT+AGG | + | tig0025293:6487-6506 | None:intergenic | 30.0% | |
| AGGTTGAAATGTGAATGTTA+TGG | + | tig0025293:6551-6570 | None:intergenic | 30.0% | |
| AGAGTCATGATGTTATTGAA+AGG | + | tig0025293:6571-6590 | None:intergenic | 30.0% | |
| AGCAAACAAGAGAAAGATAA+TGG | + | tig0025293:6608-6627 | None:intergenic | 30.0% | |
| !! | AAATTCAGGGAAATTTGCTA+TGG | + | tig0025293:6665-6684 | None:intergenic | 30.0% |
| ! | CCTTTTTGGATTCAAATTCA+GGG | + | tig0025293:6678-6697 | None:intergenic | 30.0% |
| ! | ACCTTTTTGGATTCAAATTC+AGG | + | tig0025293:6679-6698 | None:intergenic | 30.0% |
| TGTTGCAAAAATCAGAGATA+AGG | - | tig0025293:6749-6768 | Msa1421700:CDS | 30.0% | |
| ! | AGGTTTTTGAATCAAGTACA+AGG | - | tig0025293:6769-6788 | Msa1421700:CDS | 30.0% |
| TTCAGTGTAATTACATGTGT+CGG | + | tig0025293:6975-6994 | None:intergenic | 30.0% | |
| GTAAAAACTTGAGTGTTATC+AGG | - | tig0025293:7103-7122 | Msa1421700:intron | 30.0% | |
| TTGCATTTGAGCTTATTTAC+CGG | - | tig0025293:7133-7152 | Msa1421700:intron | 30.0% | |
| ! | CTCATTTTCATAAGCTTTCT+AGG | - | tig0025293:7213-7232 | Msa1421700:intron | 30.0% |
| CTAGGATTATTTACGAAAAC+AGG | - | tig0025293:7231-7250 | Msa1421700:intron | 30.0% | |
| !!! | AGTTGAGTTGAGTTTTATTG+AGG | - | tig0025293:7686-7705 | Msa1421700:intron | 30.0% |
| !!! | GTTGAGTTGAGTTTTATTGA+GGG | - | tig0025293:7687-7706 | Msa1421700:intron | 30.0% |
| GGATCTAGTTATATTCTAAC+TGG | + | tig0025293:7717-7736 | None:intergenic | 30.0% | |
| AACTGTTGAAAGACAATTCA+AGG | - | tig0025293:7756-7775 | Msa1421700:intron | 30.0% | |
| ACTGTTGAAAGACAATTCAA+GGG | - | tig0025293:7757-7776 | Msa1421700:intron | 30.0% | |
| TCGAGACATTTCATTATCTA+AGG | - | tig0025293:7800-7819 | Msa1421700:intron | 30.0% | |
| ACATTTCATTATCTAAGGAG+TGG | - | tig0025293:7805-7824 | Msa1421700:intron | 30.0% | |
| TTAGGATACAAGTTAGTGAT+CGG | + | tig0025293:7904-7923 | None:intergenic | 30.0% | |
| AATTTAACGGAGGTAGTAAA+TGG | - | tig0025293:8040-8059 | Msa1421700:CDS | 30.0% | |
| TGCAATAGCCTATGATTAAA+TGG | - | tig0025293:8200-8219 | Msa1421700:intron | 30.0% | |
| TCTCTGTCTATTTCAAAAAC+AGG | - | tig0025293:8236-8255 | Msa1421700:intron | 30.0% | |
| TCAGTCTTCACATAACTAAA+TGG | + | tig0025293:8292-8311 | None:intergenic | 30.0% | |
| CTAAGATTTGACAAGAAAAC+AGG | - | tig0025293:8337-8356 | Msa1421700:intron | 30.0% | |
| AAAGCAGTTCTATTTATCAG+AGG | - | tig0025293:8512-8531 | Msa1421700:intron | 30.0% | |
| GAATAATCATAACCTTGAGA+GGG | - | tig0025293:8632-8651 | Msa1421700:intron | 30.0% | |
| ATGTGCAAAATGTGTTATCA+AGG | - | tig0025293:8697-8716 | Msa1421700:intron | 30.0% | |
| AAATGTGTTATCAAGGACAA+TGG | - | tig0025293:8704-8723 | Msa1421700:intron | 30.0% | |
| ! | TTCTGACATAATTTGTGTAC+AGG | - | tig0025293:8868-8887 | Msa1421700:intron | 30.0% |
| !!! | TCCTTCTTTGTTTTTTGTGA+AGG | - | tig0025293:9023-9042 | Msa1421700:intron | 30.0% |
| !!! | CCTTCTTTGTTTTTTGTGAA+GGG | - | tig0025293:9024-9043 | Msa1421700:intron | 30.0% |
| ! | AGTGTGTTATGTTAGTTTCT+TGG | - | tig0025293:9136-9155 | Msa1421700:intron | 30.0% |
| ! | GTGTGTTATGTTAGTTTCTT+GGG | - | tig0025293:9137-9156 | Msa1421700:intron | 30.0% |
| AACGTTAAGCTTAGTTTATC+AGG | + | tig0025293:9326-9345 | None:intergenic | 30.0% | |
| CATATATTATATTGTCCACG+AGG | - | tig0025293:9353-9372 | Msa1421700:intron | 30.0% | |
| ! | TGAATGAAGATGGTGATTTT+TGG | - | tig0025293:9558-9577 | Msa1421700:CDS | 30.0% |
| ! | GAATGAAGATGGTGATTTTT+GGG | - | tig0025293:9559-9578 | Msa1421700:CDS | 30.0% |
| !! | ACTATACTGGTTTATATCCA+AGG | - | tig0025293:9615-9634 | Msa1421700:CDS | 30.0% |
| !! | AACAGGTATTGATTCTTTGT+TGG | + | tig0025293:9671-9690 | None:intergenic | 30.0% |
| AGGTAAATTACTGCAGATAT+TGG | - | tig0025293:9739-9758 | Msa1421700:CDS | 30.0% | |
| TAAATTACTGCAGATATTGG+AGG | - | tig0025293:9742-9761 | Msa1421700:CDS | 30.0% | |
| !!! | CTTTTTTACCTTTGATCTTC+TGG | - | tig0025293:9878-9897 | Msa1421700:exon | 30.0% |
| AATGTACCTCAAGTTATCAT+TGG | - | tig0025293:9938-9957 | Msa1421700:five_prime_UTR | 30.0% | |
| GTTAGGTTTCAGTTGAATAG+TGG | + | tig0025293:6470-6489 | None:intergenic | 35.0% | |
| ! | CAAGAGAAAGATAATGGCAA+AGG | + | tig0025293:6602-6621 | None:intergenic | 35.0% |
| CCCTGAATTTGAATCCAAAA+AGG | - | tig0025293:6675-6694 | Msa1421700:CDS | 35.0% | |
| ! | CTGATGGTAGAATTTTGTTC+TGG | - | tig0025293:6845-6864 | Msa1421700:CDS | 35.0% |
| !!! | GGTAGAATTTTGTTCTGGAA+TGG | - | tig0025293:6850-6869 | Msa1421700:CDS | 35.0% |
| TTCCCTTCTTACGACTATTA+CGG | - | tig0025293:6928-6947 | Msa1421700:CDS | 35.0% | |
| ATTATTAGCAGTGTCTTGTC+CGG | - | tig0025293:7012-7031 | Msa1421700:intron | 35.0% | |
| TTCTAATAACCCATGAAGCA+TGG | + | tig0025293:7047-7066 | None:intergenic | 35.0% | |
| AAGCACTTATGAGACAGTTT+GGG | + | tig0025293:7571-7590 | None:intergenic | 35.0% | |
| TAAGCACTTATGAGACAGTT+TGG | + | tig0025293:7572-7591 | None:intergenic | 35.0% | |
| TCATTATCTAAGGAGTGGTT+TGG | - | tig0025293:7810-7829 | Msa1421700:intron | 35.0% | |
| CATTATCTAAGGAGTGGTTT+GGG | - | tig0025293:7811-7830 | Msa1421700:intron | 35.0% | |
| ATTATCTAAGGAGTGGTTTG+GGG | - | tig0025293:7812-7831 | Msa1421700:intron | 35.0% | |
| TGATCGGTTGTTAGAAATGT+TGG | + | tig0025293:7888-7907 | None:intergenic | 35.0% | |
| ACCATGTAAGTGATCTTTCA+TGG | - | tig0025293:7954-7973 | Msa1421700:CDS | 35.0% | |
| TCCATGAAAGATCACTTACA+TGG | + | tig0025293:7958-7977 | None:intergenic | 35.0% | |
| !!! | TGGATATTTTGACATGTCAC+AGG | - | tig0025293:7974-7993 | Msa1421700:CDS | 35.0% |
| TTACAGCAAGGGCAATTTAA+CGG | - | tig0025293:8027-8046 | Msa1421700:CDS | 35.0% | |
| TTGTCAAATCTTAGTCCCAA+AGG | + | tig0025293:8331-8350 | None:intergenic | 35.0% | |
| AACAGGTGAATTGTACATTG+CGG | - | tig0025293:8354-8373 | Msa1421700:intron | 35.0% | |
| ! | ACATCGTTGGTAAATCTTAG+AGG | + | tig0025293:8457-8476 | None:intergenic | 35.0% |
| CAAATAAAGGTGAAGTTCCT+TGG | - | tig0025293:8585-8604 | Msa1421700:intron | 35.0% | |
| AACGTGTGAGAACTGTATAA+AGG | - | tig0025293:8609-8628 | Msa1421700:intron | 35.0% | |
| ACGTGTGAGAACTGTATAAA+GGG | - | tig0025293:8610-8629 | Msa1421700:intron | 35.0% | |
| GGAATAATCATAACCTTGAG+AGG | - | tig0025293:8631-8650 | Msa1421700:intron | 35.0% | |
| ATCAAGGACAATGGTTTAAC+TGG | - | tig0025293:8713-8732 | Msa1421700:intron | 35.0% | |
| TCAAGGACAATGGTTTAACT+GGG | - | tig0025293:8714-8733 | Msa1421700:intron | 35.0% | |
| ! | CTGGGATGATTATTGAGTTT+TGG | - | tig0025293:8732-8751 | Msa1421700:intron | 35.0% |
| GAAATATAACCCTGCAACAA+AGG | - | tig0025293:8938-8957 | Msa1421700:intron | 35.0% | |
| AGGAATGTTCAATTCCCAAA+TGG | - | tig0025293:8978-8997 | Msa1421700:intron | 35.0% | |
| ! | TGCTTAAGGAAATGCCATTT+GGG | + | tig0025293:8995-9014 | None:intergenic | 35.0% |
| TTGCTTAAGGAAATGCCATT+TGG | + | tig0025293:8996-9015 | None:intergenic | 35.0% | |
| CCCTTCACAAAAAACAAAGA+AGG | + | tig0025293:9027-9046 | None:intergenic | 35.0% | |
| !!! | GTTTTTTGTGAAGGGTCTAT+TGG | - | tig0025293:9032-9051 | Msa1421700:intron | 35.0% |
| AGCTAAAGAGGTAAGGTTTA+AGG | + | tig0025293:9070-9089 | None:intergenic | 35.0% | |
| AAAAAGACAGCTAGCTAAAG+AGG | + | tig0025293:9082-9101 | None:intergenic | 35.0% | |
| ! | AGTTTCTTGGGTTTGAAACT+TGG | - | tig0025293:9149-9168 | Msa1421700:intron | 35.0% |
| !! | CCTCCTAGTTAGTACTTTTT+CGG | - | tig0025293:9173-9192 | Msa1421700:intron | 35.0% |
| !! | ACACCGAAAAAGTACTAACT+AGG | + | tig0025293:9179-9198 | None:intergenic | 35.0% |
| AGGTGCAAATATCAGTTTAG+TGG | - | tig0025293:9373-9392 | Msa1421700:intron | 35.0% | |
| CTGGTTTATATCCAAGGATA+AGG | - | tig0025293:9621-9640 | Msa1421700:CDS | 35.0% | |
| AGTATAGCTTTCCTTATCCT+TGG | + | tig0025293:9635-9654 | None:intergenic | 35.0% | |
| ATTGTGAAGTATAGTCCTGA+AGG | - | tig0025293:9719-9738 | Msa1421700:CDS | 35.0% | |
| ATCTGCAGTAATTTACCTTC+AGG | + | tig0025293:9737-9756 | None:intergenic | 35.0% | |
| AAGAGAAAGATGGTCAACTT+TGG | - | tig0025293:9804-9823 | Msa1421700:CDS | 35.0% | |
| AAAGATGGTCAACTTTGGAT+TGG | - | tig0025293:9809-9828 | Msa1421700:CDS | 35.0% | |
| TCTATGCCAATGATAACTTG+AGG | + | tig0025293:9947-9966 | None:intergenic | 35.0% | |
| CAGAGCTACTCCTTTACATT+GGG | - | tig0025293:6397-6416 | Msa1421700:three_prime_UTR | 40.0% | |
| !! | GTTTCAGTTGAATAGTGGGT+AGG | + | tig0025293:6465-6484 | None:intergenic | 40.0% |
| ! | CTCTTGTTTGCTCTATACTG+TGG | - | tig0025293:6616-6635 | Msa1421700:CDS | 40.0% |
| CTATGGTACTGTGCTGAAAT+GGG | + | tig0025293:6648-6667 | None:intergenic | 40.0% | |
| ! | ATCAGGCATGTCAACCTTTT+TGG | + | tig0025293:6692-6711 | None:intergenic | 40.0% |
| AAAAGGTTGACATGCCTGAT+TGG | - | tig0025293:6692-6711 | Msa1421700:CDS | 40.0% | |
| !!! | AGCATTGTTTTTGACCCTCT+TGG | - | tig0025293:6799-6818 | Msa1421700:CDS | 40.0% |
| !! | TGTTCTGGAATGGACTTTCT+TGG | - | tig0025293:6860-6879 | Msa1421700:CDS | 40.0% |
| !! | GTTCTGGAATGGACTTTCTT+GGG | - | tig0025293:6861-6880 | Msa1421700:CDS | 40.0% |
| GTCCGTAATAGTCGTAAGAA+GGG | + | tig0025293:6933-6952 | None:intergenic | 40.0% | |
| TGTCCGTAATAGTCGTAAGA+AGG | + | tig0025293:6934-6953 | None:intergenic | 40.0% | |
| TAACCCATGAAGCATGGATA+CGG | + | tig0025293:7041-7060 | None:intergenic | 40.0% | |
| GACTATTTCATAAGCTCTCC+AGG | + | tig0025293:7514-7533 | None:intergenic | 40.0% | |
| ! | TTATCTAAGGAGTGGTTTGG+GGG | - | tig0025293:7813-7832 | Msa1421700:intron | 40.0% |
| ! | TGTTAGAAATGTTGGTGGGA+GGG | + | tig0025293:7880-7899 | None:intergenic | 40.0% |
| ! | TTGTTAGAAATGTTGGTGGG+AGG | + | tig0025293:7881-7900 | None:intergenic | 40.0% |
| CGGTTGTTAGAAATGTTGGT+GGG | + | tig0025293:7884-7903 | None:intergenic | 40.0% | |
| TCGGTTGTTAGAAATGTTGG+TGG | + | tig0025293:7885-7904 | None:intergenic | 40.0% | |
| !! | AATGGTGTCGCATTTGCTAT+GGG | + | tig0025293:8274-8293 | None:intergenic | 40.0% |
| !! | AAATGGTGTCGCATTTGCTA+TGG | + | tig0025293:8275-8294 | None:intergenic | 40.0% |
| GTGAAGACTGAACATATCTG+TGG | - | tig0025293:8301-8320 | Msa1421700:intron | 40.0% | |
| AGACTGAACATATCTGTGGA+AGG | - | tig0025293:8305-8324 | Msa1421700:intron | 40.0% | |
| TACATTGCGGATGCATATCT+TGG | - | tig0025293:8367-8386 | Msa1421700:intron | 40.0% | |
| ACATTGCGGATGCATATCTT+GGG | - | tig0025293:8368-8387 | Msa1421700:intron | 40.0% | |
| ! | CAACGATGTCGATGTTGATT+CGG | - | tig0025293:8468-8487 | Msa1421700:intron | 40.0% |
| GCAGTTCTATTTATCAGAGG+AGG | - | tig0025293:8515-8534 | Msa1421700:intron | 40.0% | |
| ! | TTCATGCAGCTGGTATTTTC+CGG | - | tig0025293:8894-8913 | Msa1421700:intron | 40.0% |
| AACATTCCTCACTAGAACAG+TGG | + | tig0025293:8967-8986 | None:intergenic | 40.0% | |
| GGCATTTCCTTAAGCAAAGA+TGG | - | tig0025293:8999-9018 | Msa1421700:intron | 40.0% | |
| GAAGGAACCATCTTTGCTTA+AGG | + | tig0025293:9009-9028 | None:intergenic | 40.0% | |
| !! | CCGAAAAAGTACTAACTAGG+AGG | + | tig0025293:9176-9195 | None:intergenic | 40.0% |
| TTTCAAACAGGCAGCTTGAT+TGG | + | tig0025293:9212-9231 | None:intergenic | 40.0% | |
| AAACTGATATTTGCACCTCG+TGG | + | tig0025293:9371-9390 | None:intergenic | 40.0% | |
| TGGTTAAAAGGAGAAAAGGC+TGG | - | tig0025293:9485-9504 | Msa1421700:intron | 40.0% | |
| GGTTAAAAGGAGAAAAGGCT+GGG | - | tig0025293:9486-9505 | Msa1421700:intron | 40.0% | |
| TTCATTCACCCTCACATTGT+CGG | + | tig0025293:9546-9565 | None:intergenic | 40.0% | |
| AATGTGAGGGTGAATGAAGA+TGG | - | tig0025293:9548-9567 | Msa1421700:intron | 40.0% | |
| !! | TGAAGATGGTGATTTTTGGG+TGG | - | tig0025293:9562-9581 | Msa1421700:CDS | 40.0% |
| CAATACCTGTTTCAAATCGG+AGG | - | tig0025293:9680-9699 | Msa1421700:CDS | 40.0% | |
| AGTGAAGTGGAAGAGAAAGA+TGG | - | tig0025293:9794-9813 | Msa1421700:CDS | 40.0% | |
| GTCATAGACCAGAAGATCAA+AGG | + | tig0025293:9889-9908 | None:intergenic | 40.0% | |
| !! | AGTTGAATAGTGGGTAGGTG+AGG | + | tig0025293:6460-6479 | None:intergenic | 45.0% |
| GCTATGGTACTGTGCTGAAA+TGG | + | tig0025293:6649-6668 | None:intergenic | 45.0% | |
| TTAGGAACCTCAGACCAATC+AGG | + | tig0025293:6709-6728 | None:intergenic | 45.0% | |
| GGGTCAAAAACAATGCTCTC+AGG | + | tig0025293:6796-6815 | None:intergenic | 45.0% | |
| TATAAGGTCCACGACCAAGA+GGG | + | tig0025293:6816-6835 | None:intergenic | 45.0% | |
| CCATCAGCAACACCAGTATA+AGG | + | tig0025293:6832-6851 | None:intergenic | 45.0% | |
| !! | CCTTATACTGGTGTTGCTGA+TGG | - | tig0025293:6829-6848 | Msa1421700:CDS | 45.0% |
| TGTGATGCAACCTACCTGTT+GGG | + | tig0025293:6907-6926 | None:intergenic | 45.0% | |
| TTGTGATGCAACCTACCTGT+TGG | + | tig0025293:6908-6927 | None:intergenic | 45.0% | |
| TGTCCGTATCCATGCTTCAT+GGG | - | tig0025293:7035-7054 | Msa1421700:intron | 45.0% | |
| CCAGGATAGTCTACGAAAAC+TGG | + | tig0025293:7496-7515 | None:intergenic | 45.0% | |
| ! | CCAGTTTTCGTAGACTATCC+TGG | - | tig0025293:7493-7512 | Msa1421700:CDS | 45.0% |
| ! | AGACAGTTTGGGAGAGCATA+TGG | + | tig0025293:7560-7579 | None:intergenic | 45.0% |
| ! | TATCTAAGGAGTGGTTTGGG+GGG | - | tig0025293:7814-7833 | Msa1421700:intron | 45.0% |
| TTTGGGGGGAAAGAACATAG+AGG | - | tig0025293:7828-7847 | Msa1421700:intron | 45.0% | |
| TTGACATGTCACAGGCTAAG+TGG | - | tig0025293:7982-8001 | Msa1421700:CDS | 45.0% | |
| TGACATGTCACAGGCTAAGT+GGG | - | tig0025293:7983-8002 | Msa1421700:CDS | 45.0% | |
| AGGCTAAGTGGGATAGTTCA+CGG | - | tig0025293:7994-8013 | Msa1421700:CDS | 45.0% | |
| !! | ATGGTGTCGCATTTGCTATG+GGG | + | tig0025293:8273-8292 | None:intergenic | 45.0% |
| ACATATCTGTGGAAGGCCTT+TGG | - | tig0025293:8312-8331 | Msa1421700:intron | 45.0% | |
| CATATCTGTGGAAGGCCTTT+GGG | - | tig0025293:8313-8332 | Msa1421700:intron | 45.0% | |
| TGCATATCTTGGGCTGTTGA+AGG | - | tig0025293:8378-8397 | Msa1421700:intron | 45.0% | |
| TATCTTGGGCTGTTGAAGGT+AGG | - | tig0025293:8382-8401 | Msa1421700:intron | 45.0% | |
| ATCTTGGGCTGTTGAAGGTA+GGG | - | tig0025293:8383-8402 | Msa1421700:intron | 45.0% | |
| AGATGTTGCTAAACCTCCCT+CGG | + | tig0025293:8410-8429 | None:intergenic | 45.0% | |
| AGCAACATCTCTTGCAACTG+AGG | - | tig0025293:8420-8439 | Msa1421700:intron | 45.0% | |
| CGAATCAACATCGACATCGT+TGG | + | tig0025293:8470-8489 | None:intergenic | 45.0% | |
| !! | GATGTCGATGTTGATTCGGA+AGG | - | tig0025293:8472-8491 | Msa1421700:intron | 45.0% |
| ACAGTTCTCACACGTTTCCA+AGG | + | tig0025293:8605-8624 | None:intergenic | 45.0% | |
| GTACAGGAATTTCATGCAGC+TGG | - | tig0025293:8884-8903 | Msa1421700:intron | 45.0% | |
| ! | TCATGCAGCTGGTATTTTCC+GGG | - | tig0025293:8895-8914 | Msa1421700:intron | 45.0% |
| ! | GTATTTTCCGGGGATGATAG+TGG | - | tig0025293:8906-8925 | Msa1421700:intron | 45.0% |
| CAGTGGTTTCCTTTGTTGCA+GGG | + | tig0025293:8950-8969 | None:intergenic | 45.0% | |
| ACAGTGGTTTCCTTTGTTGC+AGG | + | tig0025293:8951-8970 | None:intergenic | 45.0% | |
| AGGAAACCACTGTTCTAGTG+AGG | - | tig0025293:8958-8977 | Msa1421700:intron | 45.0% | |
| TTTGTGAAGGGTCTATTGGC+AGG | - | tig0025293:9036-9055 | Msa1421700:intron | 45.0% | |
| GACAGCTAGCTAAAGAGGTA+AGG | + | tig0025293:9077-9096 | None:intergenic | 45.0% | |
| GAGATCTTAGCTATCCTACC+TGG | - | tig0025293:9515-9534 | Msa1421700:intron | 45.0% | |
| TCATTCACCCTCACATTGTC+GGG | + | tig0025293:9545-9564 | None:intergenic | 45.0% | |
| ! | GCTTACCTCCGATTTGAAAC+AGG | + | tig0025293:9688-9707 | None:intergenic | 45.0% |
| CAAATCGGAGGTAAGCAACA+TGG | - | tig0025293:9692-9711 | Msa1421700:CDS | 45.0% | |
| CAGATATTGGAGGACAGTGA+GGG | - | tig0025293:9752-9771 | Msa1421700:CDS | 45.0% | |
| TGTTAGAGCTGTGAGTGAAG+TGG | - | tig0025293:9781-9800 | Msa1421700:CDS | 45.0% | |
| TTGGAAGCAATGCTCATCTC+AGG | + | tig0025293:9973-9992 | None:intergenic | 45.0% | |
| !! | TGACATGCCTGATTGGTCTG+AGG | - | tig0025293:6699-6718 | Msa1421700:CDS | 50.0% |
| ! | GTTTTTGACCCTCTTGGTCG+TGG | - | tig0025293:6805-6824 | Msa1421700:CDS | 50.0% |
| GTATAAGGTCCACGACCAAG+AGG | + | tig0025293:6817-6836 | None:intergenic | 50.0% | |
| CTTGGTCGTGGACCTTATAC+TGG | - | tig0025293:6817-6836 | Msa1421700:CDS | 50.0% | |
| TTGCTTACACTTCGCCCAAC+AGG | - | tig0025293:6890-6909 | Msa1421700:CDS | 50.0% | |
| TTACACTTCGCCCAACAGGT+AGG | - | tig0025293:6894-6913 | Msa1421700:CDS | 50.0% | |
| TGAAGCATGGATACGGACAC+CGG | + | tig0025293:7034-7053 | None:intergenic | 50.0% | |
| GTGTCCGTATCCATGCTTCA+TGG | - | tig0025293:7034-7053 | Msa1421700:intron | 50.0% | |
| GGGGGAAAGAACATAGAGGT+TGG | - | tig0025293:7832-7851 | Msa1421700:intron | 50.0% | |
| TTGGTGGGAGGGATTCAAAC+TGG | + | tig0025293:7869-7888 | None:intergenic | 50.0% | |
| GCCAGCTCAACTTACAGCAA+GGG | - | tig0025293:8016-8035 | Msa1421700:CDS | 50.0% | |
| CAGCAAGGGCAATTTAACGG+AGG | - | tig0025293:8030-8049 | Msa1421700:CDS | 50.0% | |
| GATGTTGCTAAACCTCCCTC+GGG | + | tig0025293:8409-8428 | None:intergenic | 50.0% | |
| TCTCTTGCAACTGAGGCTGA+AGG | - | tig0025293:8427-8446 | Msa1421700:intron | 50.0% | |
| CTCTTGCAACTGAGGCTGAA+GGG | - | tig0025293:8428-8447 | Msa1421700:intron | 50.0% | |
| TCTTGCAACTGAGGCTGAAG+GGG | - | tig0025293:8429-8448 | Msa1421700:intron | 50.0% | |
| ! | CATGCAGCTGGTATTTTCCG+GGG | - | tig0025293:8896-8915 | Msa1421700:intron | 50.0% |
| AACCTTGCCACTATCATCCC+CGG | + | tig0025293:8916-8935 | None:intergenic | 50.0% | |
| AGGAGAAAAGGCTGGGACAT+CGG | - | tig0025293:9493-9512 | Msa1421700:intron | 50.0% | |
| GCAGATATTGGAGGACAGTG+AGG | - | tig0025293:9751-9770 | Msa1421700:CDS | 50.0% | |
| GAGGTAGCAAGCAACGTGTG+TGG | + | tig0025293:6441-6460 | None:intergenic | 55.0% | |
| GGCCAGCTCAACTTACAGCA+AGG | - | tig0025293:8015-8034 | Msa1421700:CDS | 55.0% | |
| ! | GCCCTTGCTGTAAGTTGAGC+TGG | + | tig0025293:8020-8039 | None:intergenic | 55.0% |
| !! | TTCCGGGGATGATAGTGGCA+AGG | - | tig0025293:8911-8930 | Msa1421700:intron | 55.0% |
| TGGAGCTCCCGACAATGTGA+GGG | - | tig0025293:9535-9554 | Msa1421700:intron | 55.0% | |
| CTGTTGAAGGTAGGGCCCGA+GGG | - | tig0025293:8391-8410 | Msa1421700:intron | 60.0% | |
| ! | GCAGGTAAAGCGCCCTCTCA+AGG | + | tig0025293:8647-8666 | None:intergenic | 60.0% |
| CATTGTCGGGAGCTCCAGGT+AGG | + | tig0025293:9532-9551 | None:intergenic | 60.0% | |
| CTCACATTGTCGGGAGCTCC+AGG | + | tig0025293:9536-9555 | None:intergenic | 60.0% | |
| CTGGAGCTCCCGACAATGTG+AGG | - | tig0025293:9534-9553 | Msa1421700:intron | 60.0% | |
| GCTGTTGAAGGTAGGGCCCG+AGG | - | tig0025293:8390-8409 | Msa1421700:intron | 65.0% | |
| TTGAAGGTAGGGCCCGAGGG+AGG | - | tig0025293:8394-8413 | Msa1421700:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0025293 | gene | 6397 | 10068 | 6397 | ID=Msa1421700;Name=Msa1421700 |
| tig0025293 | mRNA | 6397 | 10068 | 6397 | ID=Msa1421700-mRNA-1;Parent=Msa1421700;Name=Msa1421700-mRNA-1;_AED=0.04;_eAED=0.04;_QI=186|1|1|1|1|1|4|197|391 |
| tig0025293 | exon | 6397 | 6993 | 6397 | ID=Msa1421700-mRNA-1:exon:2239;Parent=Msa1421700-mRNA-1 |
| tig0025293 | exon | 7408 | 7575 | 7408 | ID=Msa1421700-mRNA-1:exon:2238;Parent=Msa1421700-mRNA-1 |
| tig0025293 | exon | 7929 | 8207 | 7929 | ID=Msa1421700-mRNA-1:exon:2237;Parent=Msa1421700-mRNA-1 |
| tig0025293 | exon | 9554 | 10068 | 9554 | ID=Msa1421700-mRNA-1:exon:2236;Parent=Msa1421700-mRNA-1 |
| tig0025293 | five_prime_UTR | 9883 | 10068 | 9883 | ID=Msa1421700-mRNA-1:five_prime_utr;Parent=Msa1421700-mRNA-1 |
| tig0025293 | CDS | 9554 | 9882 | 9554 | ID=Msa1421700-mRNA-1:cds;Parent=Msa1421700-mRNA-1 |
| tig0025293 | CDS | 7929 | 8207 | 7929 | ID=Msa1421700-mRNA-1:cds;Parent=Msa1421700-mRNA-1 |
| tig0025293 | CDS | 7408 | 7575 | 7408 | ID=Msa1421700-mRNA-1:cds;Parent=Msa1421700-mRNA-1 |
| tig0025293 | CDS | 6594 | 6993 | 6594 | ID=Msa1421700-mRNA-1:cds;Parent=Msa1421700-mRNA-1 |
| tig0025293 | three_prime_UTR | 6397 | 6593 | 6397 | ID=Msa1421700-mRNA-1:three_prime_utr;Parent=Msa1421700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
