Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0545310 | XP_013455787.1 | 93.727 | 271 | 17 | 0 | 1 | 271 | 1 | 271 | 0.0 | 520 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0545310 | sp|K4N0V2|BDH_LAVIN | 61.832 | 262 | 92 | 2 | 6 | 267 | 1 | 254 | 2.69e-104 | 306 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0545310 | I3SBG4 | 93.727 | 271 | 17 | 0 | 1 | 271 | 1 | 271 | 0.0 | 520 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0220420 | Msa0545310 | 0.822646 | 2.119377e-53 | -8.615850e-47 |
| Msa0545310 | Msa0641360 | 0.813574 | 2.389087e-51 | -8.615850e-47 |
| Msa0545310 | Msa0679830 | 0.838401 | 2.938788e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0545310 | MtrunA17_Chr4g0026001 | 93.727 | 271 | 17 | 0 | 1 | 271 | 1 | 271 | 0.0 | 520 |
| Msa0545310 | MtrunA17_Chr4g0025971 | 83.395 | 271 | 45 | 0 | 1 | 271 | 1 | 271 | 1.31e-166 | 462 |
| Msa0545310 | MtrunA17_Chr4g0025981 | 82.540 | 252 | 44 | 0 | 15 | 266 | 42 | 293 | 1.09e-156 | 439 |
| Msa0545310 | MtrunA17_Chr4g0044111 | 59.160 | 262 | 104 | 1 | 12 | 270 | 11 | 272 | 1.17e-104 | 305 |
| Msa0545310 | MtrunA17_Chr7g0266981 | 59.160 | 262 | 104 | 1 | 12 | 270 | 11 | 272 | 1.89e-104 | 305 |
| Msa0545310 | MtrunA17_Chr7g0266891 | 58.077 | 260 | 106 | 1 | 14 | 270 | 7 | 266 | 2.84e-99 | 291 |
| Msa0545310 | MtrunA17_Chr4g0044131 | 55.894 | 263 | 108 | 4 | 12 | 268 | 6 | 266 | 2.21e-91 | 271 |
| Msa0545310 | MtrunA17_Chr7g0244061 | 51.648 | 273 | 109 | 4 | 12 | 262 | 27 | 298 | 1.46e-89 | 268 |
| Msa0545310 | MtrunA17_Chr7g0268591 | 51.351 | 259 | 117 | 3 | 12 | 262 | 31 | 288 | 7.31e-83 | 250 |
| Msa0545310 | MtrunA17_Chr3g0084871 | 50.185 | 271 | 125 | 2 | 8 | 268 | 10 | 280 | 3.40e-80 | 243 |
| Msa0545310 | MtrunA17_Chr7g0270451 | 50.588 | 255 | 121 | 3 | 12 | 262 | 4 | 257 | 1.63e-79 | 241 |
| Msa0545310 | MtrunA17_Chr7g0270441 | 49.807 | 259 | 124 | 3 | 12 | 266 | 4 | 260 | 4.11e-79 | 240 |
| Msa0545310 | MtrunA17_Chr7g0267001 | 50.951 | 263 | 103 | 5 | 12 | 268 | 6 | 248 | 7.74e-78 | 236 |
| Msa0545310 | MtrunA17_Chr2g0324021 | 49.412 | 255 | 124 | 3 | 12 | 262 | 4 | 257 | 9.15e-78 | 236 |
| Msa0545310 | MtrunA17_Chr7g0252031 | 49.434 | 265 | 119 | 5 | 12 | 264 | 33 | 294 | 8.11e-76 | 233 |
| Msa0545310 | MtrunA17_Chr7g0267011 | 60.870 | 184 | 72 | 0 | 12 | 195 | 6 | 189 | 1.11e-75 | 228 |
| Msa0545310 | MtrunA17_Chr6g0459261 | 46.000 | 250 | 130 | 3 | 13 | 257 | 24 | 273 | 1.44e-72 | 223 |
| Msa0545310 | MtrunA17_Chr7g0266991 | 52.137 | 234 | 92 | 2 | 8 | 238 | 19 | 235 | 2.78e-72 | 221 |
| Msa0545310 | MtrunA17_Chr4g0040371 | 46.212 | 264 | 128 | 4 | 10 | 262 | 15 | 275 | 1.66e-69 | 216 |
| Msa0545310 | MtrunA17_Chr6g0459281 | 45.968 | 248 | 129 | 3 | 13 | 255 | 12 | 259 | 4.57e-67 | 209 |
| Msa0545310 | MtrunA17_Chr6g0459301 | 44.000 | 250 | 135 | 3 | 13 | 257 | 13 | 262 | 1.39e-66 | 208 |
| Msa0545310 | MtrunA17_Chr6g0459331 | 46.400 | 250 | 129 | 3 | 13 | 257 | 12 | 261 | 1.85e-66 | 207 |
| Msa0545310 | MtrunA17_Chr6g0459271 | 44.800 | 250 | 133 | 3 | 13 | 257 | 12 | 261 | 2.69e-65 | 204 |
| Msa0545310 | MtrunA17_Chr6g0459351 | 45.020 | 251 | 127 | 4 | 13 | 255 | 12 | 259 | 6.00e-65 | 204 |
| Msa0545310 | MtrunA17_Chr4g0044121 | 54.749 | 179 | 78 | 1 | 95 | 270 | 1 | 179 | 8.33e-60 | 187 |
| Msa0545310 | MtrunA17_Chr6g0463951 | 48.256 | 172 | 84 | 3 | 95 | 262 | 1 | 171 | 1.42e-41 | 140 |
| Msa0545310 | MtrunA17_Chr7g0270471 | 50.345 | 145 | 68 | 2 | 124 | 264 | 4 | 148 | 4.67e-38 | 131 |
| Msa0545310 | MtrunA17_Chr3g0122901 | 31.923 | 260 | 157 | 7 | 10 | 259 | 71 | 320 | 6.66e-35 | 127 |
| Msa0545310 | MtrunA17_Chr1g0191751 | 34.884 | 258 | 152 | 7 | 13 | 259 | 100 | 352 | 1.09e-29 | 114 |
| Msa0545310 | MtrunA17_Chr4g0028921 | 33.080 | 263 | 164 | 7 | 14 | 267 | 11 | 270 | 1.29e-28 | 110 |
| Msa0545310 | MtrunA17_Chr3g0142651 | 50.000 | 108 | 54 | 0 | 95 | 202 | 1 | 108 | 3.47e-28 | 105 |
| Msa0545310 | MtrunA17_Chr7g0272961 | 31.008 | 258 | 162 | 7 | 13 | 259 | 39 | 291 | 1.93e-27 | 107 |
| Msa0545310 | MtrunA17_Chr4g0028911 | 31.939 | 263 | 167 | 7 | 14 | 267 | 11 | 270 | 2.18e-27 | 107 |
| Msa0545310 | MtrunA17_Chr7g0270461 | 51.020 | 98 | 48 | 0 | 12 | 109 | 44 | 141 | 2.71e-27 | 103 |
| Msa0545310 | MtrunA17_Chr4g0074511 | 32.432 | 259 | 158 | 8 | 13 | 259 | 39 | 292 | 4.65e-25 | 101 |
| Msa0545310 | MtrunA17_Chr8g0357481 | 31.227 | 269 | 159 | 7 | 14 | 265 | 14 | 273 | 2.90e-24 | 99.0 |
| Msa0545310 | MtrunA17_Chr3g0112261 | 31.496 | 254 | 159 | 8 | 14 | 259 | 19 | 265 | 1.96e-23 | 96.3 |
| Msa0545310 | MtrunA17_Chr0c30g0494101 | 32.046 | 259 | 157 | 8 | 13 | 259 | 39 | 290 | 2.84e-23 | 96.3 |
| Msa0545310 | MtrunA17_Chr1g0171831 | 31.076 | 251 | 158 | 6 | 11 | 247 | 11 | 260 | 5.26e-23 | 94.7 |
| Msa0545310 | MtrunA17_Chr7g0239511 | 30.888 | 259 | 158 | 9 | 14 | 259 | 16 | 266 | 7.13e-22 | 92.0 |
| Msa0545310 | MtrunA17_Chr3g0112271 | 30.000 | 260 | 163 | 8 | 14 | 264 | 17 | 266 | 7.64e-22 | 92.0 |
| Msa0545310 | MtrunA17_Chr3g0112171 | 31.034 | 261 | 159 | 12 | 14 | 264 | 15 | 264 | 2.25e-21 | 90.5 |
| Msa0545310 | MtrunA17_Chr3g0112151 | 30.502 | 259 | 163 | 10 | 14 | 264 | 86 | 335 | 3.49e-21 | 91.3 |
| Msa0545310 | MtrunA17_Chr4g0075531 | 28.063 | 253 | 166 | 7 | 12 | 257 | 5 | 248 | 7.90e-21 | 89.0 |
| Msa0545310 | MtrunA17_Chr7g0259521 | 27.985 | 268 | 160 | 9 | 14 | 262 | 6 | 259 | 1.11e-20 | 88.6 |
| Msa0545310 | MtrunA17_Chr4g0032141 | 29.730 | 259 | 165 | 10 | 14 | 264 | 56 | 305 | 3.93e-20 | 87.8 |
| Msa0545310 | MtrunA17_Chr4g0032181 | 32.161 | 199 | 116 | 8 | 70 | 259 | 59 | 247 | 1.53e-19 | 85.5 |
| Msa0545310 | MtrunA17_Chr4g0045041 | 31.225 | 253 | 146 | 10 | 16 | 253 | 6 | 245 | 9.04e-19 | 85.9 |
| Msa0545310 | MtrunA17_Chr4g0054341 | 30.660 | 212 | 141 | 5 | 15 | 224 | 3 | 210 | 9.94e-19 | 83.6 |
| Msa0545310 | MtrunA17_Chr7g0239481 | 31.801 | 261 | 153 | 9 | 14 | 259 | 15 | 265 | 1.33e-18 | 82.8 |
| Msa0545310 | MtrunA17_Chr7g0239491 | 30.233 | 258 | 158 | 10 | 14 | 258 | 15 | 263 | 1.58e-18 | 82.8 |
| Msa0545310 | MtrunA17_Chr4g0045061 | 29.644 | 253 | 150 | 8 | 16 | 253 | 6 | 245 | 3.37e-18 | 84.0 |
| Msa0545310 | MtrunA17_Chr7g0239451 | 29.845 | 258 | 160 | 9 | 14 | 258 | 16 | 265 | 6.91e-18 | 80.9 |
| Msa0545310 | MtrunA17_Chr7g0239501 | 30.116 | 259 | 160 | 9 | 14 | 259 | 16 | 266 | 8.80e-18 | 80.9 |
| Msa0545310 | MtrunA17_Chr3g0112141 | 28.571 | 259 | 168 | 10 | 14 | 264 | 17 | 266 | 1.05e-17 | 80.9 |
| Msa0545310 | MtrunA17_Chr8g0386171 | 28.679 | 265 | 132 | 11 | 14 | 235 | 52 | 302 | 2.26e-17 | 80.9 |
| Msa0545310 | MtrunA17_Chr7g0259531 | 26.482 | 253 | 173 | 4 | 14 | 257 | 11 | 259 | 2.57e-16 | 76.6 |
| Msa0545310 | MtrunA17_Chr3g0124471 | 30.556 | 180 | 117 | 4 | 18 | 195 | 30 | 203 | 7.71e-16 | 75.9 |
| Msa0545310 | MtrunA17_Chr8g0386201 | 27.830 | 212 | 143 | 5 | 16 | 222 | 47 | 253 | 1.42e-15 | 75.5 |
| Msa0545310 | MtrunA17_Chr3g0124481 | 31.214 | 173 | 98 | 4 | 31 | 195 | 29 | 188 | 4.87e-15 | 73.2 |
| Msa0545310 | MtrunA17_Chr4g0076931 | 31.841 | 201 | 120 | 7 | 17 | 207 | 9 | 202 | 2.19e-14 | 70.9 |
| Msa0545310 | MtrunA17_Chr4g0033091 | 30.570 | 193 | 125 | 5 | 17 | 202 | 27 | 217 | 6.82e-14 | 69.7 |
| Msa0545310 | MtrunA17_Chr8g0355281 | 28.646 | 192 | 128 | 3 | 20 | 202 | 75 | 266 | 6.05e-12 | 65.1 |
| Msa0545310 | MtrunA17_Chr1g0182511 | 26.136 | 264 | 159 | 9 | 14 | 256 | 14 | 262 | 2.38e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0545310 | AT3G51680.1 | 52.190 | 274 | 110 | 6 | 12 | 266 | 30 | 301 | 3.28e-85 | 257 |
| Msa0545310 | AT1G52340.1 | 51.111 | 270 | 119 | 3 | 12 | 268 | 16 | 285 | 5.03e-83 | 251 |
| Msa0545310 | AT4G03140.1 | 52.549 | 255 | 112 | 3 | 12 | 258 | 76 | 329 | 5.70e-79 | 242 |
| Msa0545310 | AT2G47140.1 | 50.000 | 252 | 121 | 3 | 12 | 259 | 4 | 254 | 5.12e-77 | 234 |
| Msa0545310 | AT3G26770.1 | 50.391 | 256 | 117 | 4 | 12 | 258 | 39 | 293 | 2.48e-76 | 234 |
| Msa0545310 | AT3G26760.1 | 45.076 | 264 | 133 | 4 | 6 | 258 | 28 | 290 | 2.91e-73 | 226 |
| Msa0545310 | AT2G47130.1 | 48.031 | 254 | 120 | 5 | 13 | 259 | 5 | 253 | 3.68e-70 | 217 |
| Msa0545310 | AT3G29250.2 | 45.669 | 254 | 127 | 5 | 13 | 259 | 5 | 254 | 9.00e-68 | 211 |
| Msa0545310 | AT3G29250.3 | 45.669 | 254 | 127 | 5 | 13 | 259 | 41 | 290 | 1.61e-67 | 211 |
| Msa0545310 | AT2G47120.2 | 44.275 | 262 | 125 | 6 | 9 | 259 | 2 | 253 | 8.62e-67 | 208 |
| Msa0545310 | AT3G29250.1 | 45.174 | 259 | 130 | 6 | 9 | 259 | 38 | 292 | 1.61e-66 | 209 |
| Msa0545310 | AT2G47120.1 | 44.574 | 258 | 122 | 6 | 13 | 259 | 5 | 252 | 3.39e-66 | 207 |
| Msa0545310 | AT3G29260.1 | 44.444 | 252 | 134 | 4 | 12 | 259 | 4 | 253 | 4.31e-64 | 201 |
| Msa0545310 | AT3G42960.1 | 45.000 | 260 | 126 | 6 | 12 | 258 | 6 | 261 | 3.09e-54 | 177 |
| Msa0545310 | AT1G24360.1 | 31.373 | 255 | 163 | 5 | 11 | 259 | 71 | 319 | 3.61e-31 | 118 |
| Msa0545310 | AT1G63380.3 | 32.422 | 256 | 162 | 6 | 14 | 259 | 15 | 269 | 1.05e-29 | 113 |
| Msa0545310 | AT1G63380.2 | 32.422 | 256 | 162 | 6 | 14 | 259 | 22 | 276 | 1.19e-29 | 113 |
| Msa0545310 | AT1G63380.1 | 32.422 | 256 | 162 | 6 | 14 | 259 | 17 | 271 | 1.31e-29 | 113 |
| Msa0545310 | AT1G63380.4 | 32.422 | 256 | 162 | 6 | 14 | 259 | 19 | 273 | 1.56e-29 | 113 |
| Msa0545310 | AT2G30670.1 | 31.923 | 260 | 170 | 4 | 14 | 270 | 7 | 262 | 4.16e-29 | 111 |
| Msa0545310 | AT3G55290.2 | 31.765 | 255 | 164 | 6 | 14 | 259 | 17 | 270 | 9.13e-29 | 110 |
| Msa0545310 | AT3G55290.1 | 31.765 | 255 | 164 | 6 | 14 | 259 | 18 | 271 | 9.42e-29 | 110 |
| Msa0545310 | AT1G62610.4 | 31.641 | 256 | 164 | 6 | 14 | 259 | 19 | 273 | 2.23e-28 | 110 |
| Msa0545310 | AT1G62610.2 | 31.641 | 256 | 164 | 6 | 14 | 259 | 13 | 267 | 2.27e-28 | 109 |
| Msa0545310 | AT1G62610.1 | 31.641 | 256 | 164 | 6 | 14 | 259 | 14 | 268 | 2.41e-28 | 109 |
| Msa0545310 | AT1G62610.3 | 31.641 | 256 | 164 | 6 | 14 | 259 | 15 | 269 | 2.46e-28 | 109 |
| Msa0545310 | AT3G55310.1 | 32.157 | 255 | 163 | 6 | 14 | 259 | 17 | 270 | 2.10e-27 | 107 |
| Msa0545310 | AT2G29330.1 | 31.923 | 260 | 158 | 8 | 14 | 264 | 7 | 256 | 5.05e-27 | 105 |
| Msa0545310 | AT3G05260.1 | 31.387 | 274 | 167 | 8 | 1 | 259 | 20 | 287 | 5.79e-27 | 106 |
| Msa0545310 | AT2G29310.1 | 32.443 | 262 | 166 | 7 | 14 | 270 | 7 | 262 | 6.15e-27 | 105 |
| Msa0545310 | AT2G29340.2 | 31.765 | 255 | 165 | 6 | 14 | 264 | 7 | 256 | 8.68e-27 | 105 |
| Msa0545310 | AT2G29340.1 | 32.046 | 259 | 159 | 8 | 14 | 264 | 7 | 256 | 1.05e-26 | 106 |
| Msa0545310 | AT1G54870.1 | 31.522 | 276 | 165 | 9 | 1 | 259 | 65 | 333 | 1.16e-26 | 106 |
| Msa0545310 | AT1G54870.2 | 31.522 | 276 | 165 | 9 | 1 | 259 | 67 | 335 | 1.18e-26 | 106 |
| Msa0545310 | AT3G46170.1 | 30.769 | 260 | 162 | 7 | 13 | 259 | 25 | 279 | 8.05e-26 | 103 |
| Msa0545310 | AT2G17845.1 | 29.885 | 261 | 164 | 7 | 14 | 259 | 47 | 303 | 9.54e-26 | 103 |
| Msa0545310 | AT2G47150.1 | 31.641 | 256 | 116 | 8 | 14 | 268 | 1 | 198 | 5.73e-25 | 99.0 |
| Msa0545310 | AT2G29300.1 | 32.157 | 255 | 157 | 8 | 14 | 259 | 7 | 254 | 6.88e-25 | 100 |
| Msa0545310 | AT1G07450.1 | 30.196 | 255 | 168 | 7 | 14 | 264 | 8 | 256 | 1.07e-24 | 99.8 |
| Msa0545310 | AT2G29300.2 | 31.890 | 254 | 157 | 8 | 14 | 258 | 7 | 253 | 2.99e-24 | 99.0 |
| Msa0545310 | AT1G07440.1 | 29.278 | 263 | 170 | 8 | 14 | 269 | 12 | 265 | 4.27e-24 | 98.2 |
| Msa0545310 | AT5G06060.1 | 30.000 | 260 | 163 | 9 | 14 | 264 | 9 | 258 | 1.84e-23 | 96.7 |
| Msa0545310 | AT2G29320.1 | 31.559 | 263 | 162 | 9 | 11 | 264 | 10 | 263 | 1.07e-22 | 94.7 |
| Msa0545310 | AT2G29290.2 | 29.134 | 254 | 173 | 4 | 14 | 264 | 7 | 256 | 5.22e-22 | 92.4 |
| Msa0545310 | AT2G29150.1 | 31.321 | 265 | 152 | 11 | 14 | 264 | 16 | 264 | 1.06e-21 | 92.0 |
| Msa0545310 | AT2G29370.1 | 29.344 | 259 | 166 | 7 | 14 | 264 | 16 | 265 | 1.96e-21 | 91.3 |
| Msa0545310 | AT2G29350.1 | 29.921 | 254 | 170 | 5 | 14 | 264 | 15 | 263 | 5.42e-21 | 90.1 |
| Msa0545310 | AT2G29340.3 | 32.308 | 195 | 127 | 3 | 14 | 205 | 7 | 199 | 6.67e-21 | 88.2 |
| Msa0545310 | AT2G29340.4 | 32.308 | 195 | 127 | 3 | 14 | 205 | 7 | 199 | 6.67e-21 | 88.2 |
| Msa0545310 | AT5G50700.1 | 29.386 | 228 | 148 | 6 | 14 | 235 | 45 | 265 | 7.55e-21 | 90.9 |
| Msa0545310 | AT5G50600.1 | 29.386 | 228 | 148 | 6 | 14 | 235 | 45 | 265 | 7.55e-21 | 90.9 |
| Msa0545310 | AT4G05530.1 | 32.549 | 255 | 152 | 10 | 12 | 257 | 7 | 250 | 7.73e-21 | 89.4 |
| Msa0545310 | AT5G10050.1 | 31.694 | 183 | 117 | 4 | 15 | 195 | 6 | 182 | 1.34e-20 | 89.0 |
| Msa0545310 | AT2G29310.3 | 33.333 | 195 | 125 | 3 | 14 | 205 | 7 | 199 | 2.45e-20 | 86.7 |
| Msa0545310 | AT2G29260.1 | 28.625 | 269 | 175 | 9 | 4 | 264 | 58 | 317 | 2.53e-20 | 89.0 |
| Msa0545310 | AT5G18210.1 | 28.839 | 267 | 166 | 10 | 7 | 257 | 1 | 259 | 9.47e-20 | 86.3 |
| Msa0545310 | AT3G12800.1 | 32.584 | 267 | 147 | 9 | 14 | 259 | 10 | 264 | 1.05e-19 | 87.0 |
| Msa0545310 | AT5G65205.1 | 32.240 | 183 | 116 | 4 | 15 | 195 | 7 | 183 | 1.71e-19 | 86.3 |
| Msa0545310 | AT2G29310.2 | 30.769 | 234 | 151 | 7 | 36 | 264 | 27 | 254 | 2.23e-19 | 85.5 |
| Msa0545310 | AT2G29360.1 | 29.502 | 261 | 163 | 8 | 14 | 264 | 16 | 265 | 3.28e-19 | 85.1 |
| Msa0545310 | AT5G50590.2 | 32.022 | 178 | 112 | 4 | 13 | 185 | 44 | 217 | 9.21e-19 | 83.6 |
| Msa0545310 | AT5G50690.2 | 32.022 | 178 | 112 | 4 | 13 | 185 | 44 | 217 | 9.21e-19 | 83.6 |
| Msa0545310 | AT5G50770.1 | 32.287 | 223 | 142 | 8 | 16 | 233 | 47 | 265 | 1.05e-18 | 84.7 |
| Msa0545310 | AT5G50590.1 | 32.022 | 178 | 112 | 4 | 13 | 185 | 44 | 217 | 1.89e-18 | 83.6 |
| Msa0545310 | AT5G50690.1 | 32.022 | 178 | 112 | 4 | 13 | 185 | 44 | 217 | 1.89e-18 | 83.6 |
| Msa0545310 | AT1G10310.1 | 31.373 | 204 | 137 | 3 | 5 | 207 | 6 | 207 | 1.93e-18 | 82.4 |
| Msa0545310 | AT4G13180.1 | 30.545 | 275 | 163 | 10 | 1 | 259 | 1 | 263 | 7.93e-18 | 81.3 |
| Msa0545310 | AT1G49670.2 | 31.683 | 202 | 124 | 4 | 16 | 204 | 6 | 206 | 1.63e-17 | 82.4 |
| Msa0545310 | AT1G49670.1 | 31.683 | 202 | 124 | 4 | 16 | 204 | 6 | 206 | 1.73e-17 | 82.4 |
| Msa0545310 | AT5G18210.2 | 28.623 | 276 | 168 | 11 | 7 | 266 | 1 | 263 | 3.69e-17 | 79.7 |
| Msa0545310 | AT3G47350.2 | 28.358 | 201 | 128 | 6 | 16 | 208 | 46 | 238 | 3.68e-16 | 77.4 |
| Msa0545310 | AT3G47350.1 | 28.358 | 201 | 128 | 6 | 16 | 208 | 46 | 238 | 3.96e-16 | 77.0 |
| Msa0545310 | AT2G29290.1 | 28.571 | 196 | 135 | 3 | 70 | 264 | 48 | 239 | 4.45e-16 | 75.9 |
| Msa0545310 | AT2G29350.3 | 30.102 | 196 | 131 | 4 | 70 | 264 | 35 | 225 | 8.15e-16 | 75.1 |
| Msa0545310 | AT2G29320.3 | 31.527 | 203 | 125 | 6 | 11 | 205 | 10 | 206 | 2.43e-15 | 73.2 |
| Msa0545310 | AT2G29350.2 | 30.769 | 195 | 130 | 3 | 14 | 205 | 15 | 207 | 4.54e-15 | 72.8 |
| Msa0545310 | AT2G29320.2 | 29.487 | 234 | 147 | 9 | 40 | 264 | 21 | 245 | 8.10e-15 | 72.8 |
| Msa0545310 | AT3G04000.1 | 27.799 | 259 | 168 | 7 | 14 | 256 | 14 | 269 | 5.25e-14 | 70.9 |
| Msa0545310 | AT3G03980.1 | 26.766 | 269 | 157 | 9 | 14 | 256 | 14 | 268 | 4.06e-13 | 68.2 |
| Msa0545310 | AT5G04900.1 | 30.890 | 191 | 124 | 3 | 20 | 202 | 83 | 273 | 1.30e-12 | 67.4 |
| Msa0545310 | AT2G29310.4 | 30.636 | 173 | 115 | 3 | 36 | 205 | 27 | 197 | 1.84e-12 | 65.1 |
Find 75 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTGAAGCTGCTTTGTATT+TGG | 0.166719 | 4_1:-35342801 | Msa0545310:CDS |
| TGCAACTTGTTTACCTTCTT+AGG | 0.212297 | 4_1:+35344027 | None:intergenic |
| GCAGCTTCAGCCACATCTTT+TGG | 0.258023 | 4_1:+35342812 | None:intergenic |
| ACCCCACTATGAATAAAATT+TGG | 0.267742 | 4_1:-35342560 | Msa0545310:three_prime_UTR |
| TTCTTTAAGCTTGATGATAA+TGG | 0.268912 | 4_1:-35342878 | Msa0545310:CDS |
| GCTGAAGCTGCTTTGTATTT+GGG | 0.312530 | 4_1:-35342800 | Msa0545310:CDS |
| GTCAATCACTTCTTCAAATT+CGG | 0.325241 | 4_1:+35343150 | None:intergenic |
| GATGTCTAGTTTACCGTACT+TGG | 0.364605 | 4_1:+35343234 | None:intergenic |
| ATTATGCTACCTCGTCGAAC+GGG | 0.382112 | 4_1:+35343073 | None:intergenic |
| GGGCTCACGGTCGAAAATAA+TGG | 0.383566 | 4_1:-35342728 | Msa0545310:CDS |
| ACCCATGGAATGCGTTCCTT+TGG | 0.387271 | 4_1:-35344060 | Msa0545310:exon |
| CTTGGAAACGGTTGTGTTCA+CGG | 0.391770 | 4_1:+35343252 | None:intergenic |
| AGGGGTTTATTCTAATCTAA+AGG | 0.394298 | 4_1:-35342849 | Msa0545310:CDS |
| AACTTGGCTGGTGTATTTCT+CGG | 0.395193 | 4_1:-35343124 | Msa0545310:CDS |
| GGGGTTTATTCTAATCTAAA+GGG | 0.410132 | 4_1:-35342848 | Msa0545310:CDS |
| AATTGATTTGCAAGGCTTGA+AGG | 0.412288 | 4_1:-35343469 | Msa0545310:intron |
| ATTAACACAGCTAGTGTTTG+TGG | 0.418206 | 4_1:-35343052 | Msa0545310:CDS |
| GTTAACAACGCAGGCATAAC+CGG | 0.433713 | 4_1:-35343208 | Msa0545310:CDS |
| GGTCATAATCTGGTCATAGA+TGG | 0.437032 | 4_1:-35342752 | Msa0545310:CDS |
| GCAACTTGTTTACCTTCTTA+GGG | 0.438236 | 4_1:+35344028 | None:intergenic |
| TGTGTGTCACCTTATGTTGT+TGG | 0.443444 | 4_1:-35342920 | Msa0545310:CDS |
| GTATGTTAGTGGTCATAATC+TGG | 0.450617 | 4_1:-35342762 | Msa0545310:CDS |
| CAGAAGATTTGTGTAACTCT+TGG | 0.459167 | 4_1:+35343323 | None:intergenic |
| GTTCAAAGCACGCCGTTGTC+GGG | 0.459412 | 4_1:-35342994 | Msa0545310:CDS |
| AACACAACCGTTTCCAAGTA+CGG | 0.463216 | 4_1:-35343247 | Msa0545310:CDS |
| TGGTTTCTGCTGCCCTAAGA+AGG | 0.468552 | 4_1:-35344040 | Msa0545310:intron |
| TTCATATAAATACTAACTCT+TGG | 0.480964 | 4_1:-35344135 | None:intergenic |
| AAAACAAAATTGTTATCTAA+AGG | 0.482178 | 4_1:+35342519 | None:intergenic |
| AGTTCAAAGCACGCCGTTGT+CGG | 0.484187 | 4_1:-35342995 | Msa0545310:CDS |
| GATGAGTCGAAGTATGTTAG+TGG | 0.487950 | 4_1:-35342773 | Msa0545310:CDS |
| TCGGAACAAAACACGCTGCT+AGG | 0.488852 | 4_1:-35343105 | Msa0545310:CDS |
| ACAGGTGGTGCGAGCGGCAT+CGG | 0.490938 | 4_1:-35343430 | Msa0545310:CDS |
| ATTGATTTGCAAGGCTTGAA+GGG | 0.500137 | 4_1:-35343468 | Msa0545310:intron |
| AACGGAGTTCCAACAACATA+AGG | 0.500717 | 4_1:+35342911 | None:intergenic |
| AACCAAAGGAACGCATTCCA+TGG | 0.502036 | 4_1:+35344058 | None:intergenic |
| TAGTTTACCGTACTTGGAAA+CGG | 0.502375 | 4_1:+35343240 | None:intergenic |
| TGTCCATTGTGACGTAAGAA+AGG | 0.504465 | 4_1:-35343293 | Msa0545310:CDS |
| CTTGTAAGTTGCGTCAAAGC+TGG | 0.515413 | 4_1:-35342584 | Msa0545310:three_prime_UTR |
| TTATGTTGTTGGAACTCCGT+TGG | 0.530258 | 4_1:-35342909 | Msa0545310:CDS |
| CGGAACAAAACACGCTGCTA+GGG | 0.533738 | 4_1:-35343104 | Msa0545310:CDS |
| AGAAGTGATTGACACTAACT+TGG | 0.535594 | 4_1:-35343140 | Msa0545310:CDS |
| GGGAAAGTAGCTCTGATCAC+AGG | 0.540590 | 4_1:-35343448 | Msa0545310:CDS |
| TTAAAGAAATTCTTAGCCAA+CGG | 0.547896 | 4_1:+35342893 | None:intergenic |
| AACGACTTGAGCTCCGTGGT+TGG | 0.548195 | 4_1:+35343384 | None:intergenic |
| TCTTACGTCACAATGGACAT+AGG | 0.551868 | 4_1:+35343297 | None:intergenic |
| AGCTGATATTCAAGATGACA+TGG | 0.557757 | 4_1:-35343359 | Msa0545310:CDS |
| GCCATCGAACTTGGACCGTA+CGG | 0.560018 | 4_1:-35342956 | Msa0545310:CDS |
| CATAATCTGGTCATAGATGG+AGG | 0.576945 | 4_1:-35342749 | Msa0545310:CDS |
| AATTATGCTACCTCGTCGAA+CGG | 0.577311 | 4_1:+35343072 | None:intergenic |
| ACCAAAGGAACGCATTCCAT+GGG | 0.577961 | 4_1:+35344059 | None:intergenic |
| GCAAGACTCTTCTCCAACCA+CGG | 0.582010 | 4_1:-35343397 | Msa0545310:CDS |
| CTGATCACAGGTGGTGCGAG+CGG | 0.585318 | 4_1:-35343436 | Msa0545310:CDS |
| GACATCATGGTTAACAACGC+AGG | 0.585470 | 4_1:-35343217 | Msa0545310:CDS |
| CATATATCTAAGTATACGTA+CGG | 0.594701 | 4_1:+35342668 | None:intergenic |
| AGTGTTTGTGGATGCATAGG+TGG | 0.595612 | 4_1:-35343040 | Msa0545310:CDS |
| GTGATTGACACTAACTTGGC+TGG | 0.595735 | 4_1:-35343136 | Msa0545310:CDS |
| AAAAGTGAAAAGCTCACCCA+TGG | 0.598451 | 4_1:-35344075 | Msa0545310:exon |
| GGTCATAGATGGAGGGCTCA+CGG | 0.600112 | 4_1:-35342741 | Msa0545310:CDS |
| GTACGGTAAACTAGACATCA+TGG | 0.602807 | 4_1:-35343230 | Msa0545310:CDS |
| TTGTGGATGCATAGGTGGTG+TGG | 0.603697 | 4_1:-35343035 | Msa0545310:CDS |
| TTTCCTTTCTTACGTCACAA+TGG | 0.611758 | 4_1:+35343290 | None:intergenic |
| TTATGCTACCTCGTCGAACG+GGG | 0.611852 | 4_1:+35343074 | None:intergenic |
| TGGTGCGAGCGGCATCGGCG+AGG | 0.613425 | 4_1:-35343425 | Msa0545310:CDS |
| GCTAGTGTTTGTGGATGCAT+AGG | 0.616627 | 4_1:-35343043 | Msa0545310:CDS |
| TAATCTTATGCCAAAAGATG+TGG | 0.618201 | 4_1:-35342822 | Msa0545310:CDS |
| GGCGTGCTTTGAACTTGTGT+AGG | 0.622128 | 4_1:+35343003 | None:intergenic |
| ACCGTACGGTCCAAGTTCGA+TGG | 0.623392 | 4_1:+35342955 | None:intergenic |
| CAATTCACTCTAATACCGTA+CGG | 0.635264 | 4_1:+35342941 | None:intergenic |
| ATAATCTGGTCATAGATGGA+GGG | 0.653603 | 4_1:-35342748 | Msa0545310:CDS |
| GTTGGAGAAGAGTCTTGCAG+TGG | 0.664924 | 4_1:+35343402 | None:intergenic |
| CTTAGGGCAGCAGAAACCAA+AGG | 0.669735 | 4_1:+35344044 | None:intergenic |
| AAAGTAGCTCTGATCACAGG+TGG | 0.672097 | 4_1:-35343445 | Msa0545310:CDS |
| GTAATGATCCCCGTTCGACG+AGG | 0.673490 | 4_1:-35343082 | Msa0545310:CDS |
| CTATAACGACTTGAGCTCCG+TGG | 0.687548 | 4_1:+35343380 | None:intergenic |
| GCTGATATTCAAGATGACAT+GGG | 0.689593 | 4_1:-35343358 | Msa0545310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAATTATTCTAATTTTTTTT+TGG | - | chr4_1:35342754-35342773 | Msa0545310:CDS | 10.0% |
| !!! | GAATTATTCTAATTTTTTTT+TGG | - | chr4_1:35342754-35342773 | Msa0545310:CDS | 10.0% |
| !!! | AATTTAACTTTGATATAGTT+TGG | - | chr4_1:35342639-35342658 | Msa0545310:three_prime_UTR | 15.0% |
| !!! | ATTTAACTTTGATATAGTTT+GGG | - | chr4_1:35342640-35342659 | Msa0545310:three_prime_UTR | 15.0% |
| !!! | TTTTATCTAATTTTTAAGCT+AGG | + | chr4_1:35342673-35342692 | None:intergenic | 15.0% |
| !!! | TATATTTTTATGTATGATTG+TGG | + | chr4_1:35342826-35342845 | None:intergenic | 15.0% |
| !!! | GAAATTATCATATTTGAAAT+AGG | + | chr4_1:35343001-35343020 | None:intergenic | 15.0% |
| !!! | TTTTTTCTTTTGTTTTTTTG+AGG | + | chr4_1:35343057-35343076 | None:intergenic | 15.0% |
| !! | AAACAAAAGAAAAAAAAGTA+CGG | - | chr4_1:35343062-35343081 | Msa0545310:CDS | 15.0% |
| !! | AAAACAAAATTGTTATCTAA+AGG | + | chr4_1:35344087-35344106 | None:intergenic | 15.0% |
| !!! | AATTTAACTTTGATATAGTT+TGG | - | chr4_1:35342639-35342658 | Msa0545310:three_prime_UTR | 15.0% |
| !!! | ATTTAACTTTGATATAGTTT+GGG | - | chr4_1:35342640-35342659 | Msa0545310:three_prime_UTR | 15.0% |
| !!! | TTTTATCTAATTTTTAAGCT+AGG | + | chr4_1:35342673-35342692 | None:intergenic | 15.0% |
| !!! | TATATTTTTATGTATGATTG+TGG | + | chr4_1:35342826-35342845 | None:intergenic | 15.0% |
| !!! | GAAATTATCATATTTGAAAT+AGG | + | chr4_1:35343001-35343020 | None:intergenic | 15.0% |
| !!! | TTTTTTCTTTTGTTTTTTTG+AGG | + | chr4_1:35343057-35343076 | None:intergenic | 15.0% |
| !! | AAACAAAAGAAAAAAAAGTA+CGG | - | chr4_1:35343062-35343081 | Msa0545310:CDS | 15.0% |
| !! | AAAACAAAATTGTTATCTAA+AGG | + | chr4_1:35344087-35344106 | None:intergenic | 15.0% |
| !! | TTGAATTAAATTTGTGTACA+TGG | - | chr4_1:35342695-35342714 | Msa0545310:exon | 20.0% |
| !!! | AAACAACTTCTATTTTTCTT+AGG | + | chr4_1:35342932-35342951 | None:intergenic | 20.0% |
| !!! | TGTTCAAAAGTTTTTATCTT+TGG | + | chr4_1:35343023-35343042 | None:intergenic | 20.0% |
| !! | ACAATTAATTTCAGTTACAA+AGG | + | chr4_1:35343091-35343110 | None:intergenic | 20.0% |
| !! | TTGAATTAAATTTGTGTACA+TGG | - | chr4_1:35342695-35342714 | Msa0545310:exon | 20.0% |
| !!! | AAACAACTTCTATTTTTCTT+AGG | + | chr4_1:35342932-35342951 | None:intergenic | 20.0% |
| !!! | TGTTCAAAAGTTTTTATCTT+TGG | + | chr4_1:35343023-35343042 | None:intergenic | 20.0% |
| !! | ACAATTAATTTCAGTTACAA+AGG | + | chr4_1:35343091-35343110 | None:intergenic | 20.0% |
| !!! | ATATTACTCTGAAGTTTGTT+TGG | + | chr4_1:35342730-35342749 | None:intergenic | 25.0% |
| !! | ATTTTTATGTATGATTGTGG+AGG | + | chr4_1:35342823-35342842 | None:intergenic | 25.0% |
| !!! | TAACTTGTTTTCAAGTATGT+TGG | + | chr4_1:35343432-35343451 | None:intergenic | 25.0% |
| ! | TTAAAGAAATTCTTAGCCAA+CGG | + | chr4_1:35343713-35343732 | None:intergenic | 25.0% |
| !! | TTCTTTAAGCTTGATGATAA+TGG | - | chr4_1:35343725-35343744 | Msa0545310:intron | 25.0% |
| !!! | TTGATGATAATGGTGTTTTA+GGG | - | chr4_1:35343735-35343754 | Msa0545310:intron | 25.0% |
| ! | CATATATCTAAGTATACGTA+CGG | + | chr4_1:35343938-35343957 | None:intergenic | 25.0% |
| !! | TGCCAAATTTTATTCATAGT+GGG | + | chr4_1:35344048-35344067 | None:intergenic | 25.0% |
| !! | TTGCCAAATTTTATTCATAG+TGG | + | chr4_1:35344049-35344068 | None:intergenic | 25.0% |
| !!! | ATATTACTCTGAAGTTTGTT+TGG | + | chr4_1:35342730-35342749 | None:intergenic | 25.0% |
| !! | ATTTTTATGTATGATTGTGG+AGG | + | chr4_1:35342823-35342842 | None:intergenic | 25.0% |
| !!! | TAACTTGTTTTCAAGTATGT+TGG | + | chr4_1:35343432-35343451 | None:intergenic | 25.0% |
| ! | TTAAAGAAATTCTTAGCCAA+CGG | + | chr4_1:35343713-35343732 | None:intergenic | 25.0% |
| !! | TTCTTTAAGCTTGATGATAA+TGG | - | chr4_1:35343725-35343744 | Msa0545310:intron | 25.0% |
| !!! | TTGATGATAATGGTGTTTTA+GGG | - | chr4_1:35343735-35343754 | Msa0545310:intron | 25.0% |
| ! | CATATATCTAAGTATACGTA+CGG | + | chr4_1:35343938-35343957 | None:intergenic | 25.0% |
| !! | TGCCAAATTTTATTCATAGT+GGG | + | chr4_1:35344048-35344067 | None:intergenic | 25.0% |
| !! | TTGCCAAATTTTATTCATAG+TGG | + | chr4_1:35344049-35344068 | None:intergenic | 25.0% |
| AACTTTGATATAGTTTGGGT+TGG | - | chr4_1:35342644-35342663 | Msa0545310:three_prime_UTR | 30.0% | |
| ! | AGTAAAATGAGTCTAAGATG+TGG | + | chr4_1:35342854-35342873 | None:intergenic | 30.0% |
| !!! | TATGTTGGTTTTGTTTACAC+CGG | + | chr4_1:35343417-35343436 | None:intergenic | 30.0% |
| GTCAATCACTTCTTCAAATT+CGG | + | chr4_1:35343456-35343475 | None:intergenic | 30.0% | |
| !!! | CTTGATGATAATGGTGTTTT+AGG | - | chr4_1:35343734-35343753 | Msa0545310:intron | 30.0% |
| !!! | TGATGATAATGGTGTTTTAG+GGG | - | chr4_1:35343736-35343755 | Msa0545310:intron | 30.0% |
| AGGGGTTTATTCTAATCTAA+AGG | - | chr4_1:35343754-35343773 | Msa0545310:intron | 30.0% | |
| GGGGTTTATTCTAATCTAAA+GGG | - | chr4_1:35343755-35343774 | Msa0545310:intron | 30.0% | |
| TAATCTTATGCCAAAAGATG+TGG | - | chr4_1:35343781-35343800 | Msa0545310:intron | 30.0% | |
| ACCCCACTATGAATAAAATT+TGG | - | chr4_1:35344043-35344062 | Msa0545310:CDS | 30.0% | |
| ! | GCCAAATTTTATTCATAGTG+GGG | + | chr4_1:35344047-35344066 | None:intergenic | 30.0% |
| AACTTTGATATAGTTTGGGT+TGG | - | chr4_1:35342644-35342663 | Msa0545310:three_prime_UTR | 30.0% | |
| ! | AGTAAAATGAGTCTAAGATG+TGG | + | chr4_1:35342854-35342873 | None:intergenic | 30.0% |
| !!! | TATGTTGGTTTTGTTTACAC+CGG | + | chr4_1:35343417-35343436 | None:intergenic | 30.0% |
| GTCAATCACTTCTTCAAATT+CGG | + | chr4_1:35343456-35343475 | None:intergenic | 30.0% | |
| !!! | CTTGATGATAATGGTGTTTT+AGG | - | chr4_1:35343734-35343753 | Msa0545310:intron | 30.0% |
| !!! | TGATGATAATGGTGTTTTAG+GGG | - | chr4_1:35343736-35343755 | Msa0545310:intron | 30.0% |
| AGGGGTTTATTCTAATCTAA+AGG | - | chr4_1:35343754-35343773 | Msa0545310:intron | 30.0% | |
| GGGGTTTATTCTAATCTAAA+GGG | - | chr4_1:35343755-35343774 | Msa0545310:intron | 30.0% | |
| TAATCTTATGCCAAAAGATG+TGG | - | chr4_1:35343781-35343800 | Msa0545310:intron | 30.0% | |
| ACCCCACTATGAATAAAATT+TGG | - | chr4_1:35344043-35344062 | Msa0545310:CDS | 30.0% | |
| ! | GCCAAATTTTATTCATAGTG+GGG | + | chr4_1:35344047-35344066 | None:intergenic | 30.0% |
| ! | GCAACTTGTTTACCTTCTTA+GGG | + | chr4_1:35342578-35342597 | None:intergenic | 35.0% |
| ! | TGCAACTTGTTTACCTTCTT+AGG | + | chr4_1:35342579-35342598 | None:intergenic | 35.0% |
| GCTGCATCATCATACATAAA+AGG | + | chr4_1:35342610-35342629 | None:intergenic | 35.0% | |
| !! | TCATGCTCAATTGATTTGCA+AGG | - | chr4_1:35343126-35343145 | Msa0545310:CDS | 35.0% |
| !! | AATTGATTTGCAAGGCTTGA+AGG | - | chr4_1:35343134-35343153 | Msa0545310:CDS | 35.0% |
| !! | ATTGATTTGCAAGGCTTGAA+GGG | - | chr4_1:35343135-35343154 | Msa0545310:CDS | 35.0% |
| AGCTGATATTCAAGATGACA+TGG | - | chr4_1:35343244-35343263 | Msa0545310:CDS | 35.0% | |
| GCTGATATTCAAGATGACAT+GGG | - | chr4_1:35343245-35343264 | Msa0545310:CDS | 35.0% | |
| CAGAAGATTTGTGTAACTCT+TGG | + | chr4_1:35343283-35343302 | None:intergenic | 35.0% | |
| TTTCCTTTCTTACGTCACAA+TGG | + | chr4_1:35343316-35343335 | None:intergenic | 35.0% | |
| TAGTTTACCGTACTTGGAAA+CGG | + | chr4_1:35343366-35343385 | None:intergenic | 35.0% | |
| AGAAGTGATTGACACTAACT+TGG | - | chr4_1:35343463-35343482 | Msa0545310:intron | 35.0% | |
| ATTAACACAGCTAGTGTTTG+TGG | - | chr4_1:35343551-35343570 | Msa0545310:intron | 35.0% | |
| CAATTCACTCTAATACCGTA+CGG | + | chr4_1:35343665-35343684 | None:intergenic | 35.0% | |
| GTATGTTAGTGGTCATAATC+TGG | - | chr4_1:35343841-35343860 | Msa0545310:intron | 35.0% | |
| ATAATCTGGTCATAGATGGA+GGG | - | chr4_1:35343855-35343874 | Msa0545310:intron | 35.0% | |
| ! | GCAACTTGTTTACCTTCTTA+GGG | + | chr4_1:35342578-35342597 | None:intergenic | 35.0% |
| ! | TGCAACTTGTTTACCTTCTT+AGG | + | chr4_1:35342579-35342598 | None:intergenic | 35.0% |
| GCTGCATCATCATACATAAA+AGG | + | chr4_1:35342610-35342629 | None:intergenic | 35.0% | |
| !! | TCATGCTCAATTGATTTGCA+AGG | - | chr4_1:35343126-35343145 | Msa0545310:CDS | 35.0% |
| !! | AATTGATTTGCAAGGCTTGA+AGG | - | chr4_1:35343134-35343153 | Msa0545310:CDS | 35.0% |
| !! | ATTGATTTGCAAGGCTTGAA+GGG | - | chr4_1:35343135-35343154 | Msa0545310:CDS | 35.0% |
| AGCTGATATTCAAGATGACA+TGG | - | chr4_1:35343244-35343263 | Msa0545310:CDS | 35.0% | |
| GCTGATATTCAAGATGACAT+GGG | - | chr4_1:35343245-35343264 | Msa0545310:CDS | 35.0% | |
| CAGAAGATTTGTGTAACTCT+TGG | + | chr4_1:35343283-35343302 | None:intergenic | 35.0% | |
| TTTCCTTTCTTACGTCACAA+TGG | + | chr4_1:35343316-35343335 | None:intergenic | 35.0% | |
| TAGTTTACCGTACTTGGAAA+CGG | + | chr4_1:35343366-35343385 | None:intergenic | 35.0% | |
| AGAAGTGATTGACACTAACT+TGG | - | chr4_1:35343463-35343482 | Msa0545310:intron | 35.0% | |
| ATTAACACAGCTAGTGTTTG+TGG | - | chr4_1:35343551-35343570 | Msa0545310:intron | 35.0% | |
| CAATTCACTCTAATACCGTA+CGG | + | chr4_1:35343665-35343684 | None:intergenic | 35.0% | |
| GTATGTTAGTGGTCATAATC+TGG | - | chr4_1:35343841-35343860 | Msa0545310:intron | 35.0% | |
| ATAATCTGGTCATAGATGGA+GGG | - | chr4_1:35343855-35343874 | Msa0545310:intron | 35.0% | |
| AAAAGTGAAAAGCTCACCCA+TGG | - | chr4_1:35342528-35342547 | Msa0545310:three_prime_UTR | 40.0% | |
| TCTTACGTCACAATGGACAT+AGG | + | chr4_1:35343309-35343328 | None:intergenic | 40.0% | |
| TGTCCATTGTGACGTAAGAA+AGG | - | chr4_1:35343310-35343329 | Msa0545310:CDS | 40.0% | |
| AACACAACCGTTTCCAAGTA+CGG | - | chr4_1:35343356-35343375 | Msa0545310:CDS | 40.0% | |
| ! | GATGTCTAGTTTACCGTACT+TGG | + | chr4_1:35343372-35343391 | None:intergenic | 40.0% |
| GTACGGTAAACTAGACATCA+TGG | - | chr4_1:35343373-35343392 | Msa0545310:CDS | 40.0% | |
| AACTTGGCTGGTGTATTTCT+CGG | - | chr4_1:35343479-35343498 | Msa0545310:intron | 40.0% | |
| AATTATGCTACCTCGTCGAA+CGG | + | chr4_1:35343534-35343553 | None:intergenic | 40.0% | |
| ! | GTTTTTCATTAGCCCGACAA+CGG | + | chr4_1:35343624-35343643 | None:intergenic | 40.0% |
| TGTCGGGCTAATGAAAAACA+CGG | - | chr4_1:35343625-35343644 | Msa0545310:intron | 40.0% | |
| TGTGTGTCACCTTATGTTGT+TGG | - | chr4_1:35343683-35343702 | Msa0545310:intron | 40.0% | |
| AACGGAGTTCCAACAACATA+AGG | + | chr4_1:35343695-35343714 | None:intergenic | 40.0% | |
| TTATGTTGTTGGAACTCCGT+TGG | - | chr4_1:35343694-35343713 | Msa0545310:intron | 40.0% | |
| ! | GCTGAAGCTGCTTTGTATTT+GGG | - | chr4_1:35343803-35343822 | Msa0545310:intron | 40.0% |
| GATGAGTCGAAGTATGTTAG+TGG | - | chr4_1:35343830-35343849 | Msa0545310:intron | 40.0% | |
| GGTCATAATCTGGTCATAGA+TGG | - | chr4_1:35343851-35343870 | Msa0545310:intron | 40.0% | |
| CATAATCTGGTCATAGATGG+AGG | - | chr4_1:35343854-35343873 | Msa0545310:intron | 40.0% | |
| AAAAGTGAAAAGCTCACCCA+TGG | - | chr4_1:35342528-35342547 | Msa0545310:three_prime_UTR | 40.0% | |
| TCTTACGTCACAATGGACAT+AGG | + | chr4_1:35343309-35343328 | None:intergenic | 40.0% | |
| TGTCCATTGTGACGTAAGAA+AGG | - | chr4_1:35343310-35343329 | Msa0545310:CDS | 40.0% | |
| AACACAACCGTTTCCAAGTA+CGG | - | chr4_1:35343356-35343375 | Msa0545310:CDS | 40.0% | |
| ! | GATGTCTAGTTTACCGTACT+TGG | + | chr4_1:35343372-35343391 | None:intergenic | 40.0% |
| GTACGGTAAACTAGACATCA+TGG | - | chr4_1:35343373-35343392 | Msa0545310:CDS | 40.0% | |
| AACTTGGCTGGTGTATTTCT+CGG | - | chr4_1:35343479-35343498 | Msa0545310:intron | 40.0% | |
| AATTATGCTACCTCGTCGAA+CGG | + | chr4_1:35343534-35343553 | None:intergenic | 40.0% | |
| ! | GTTTTTCATTAGCCCGACAA+CGG | + | chr4_1:35343624-35343643 | None:intergenic | 40.0% |
| TGTCGGGCTAATGAAAAACA+CGG | - | chr4_1:35343625-35343644 | Msa0545310:intron | 40.0% | |
| TGTGTGTCACCTTATGTTGT+TGG | - | chr4_1:35343683-35343702 | Msa0545310:intron | 40.0% | |
| AACGGAGTTCCAACAACATA+AGG | + | chr4_1:35343695-35343714 | None:intergenic | 40.0% | |
| TTATGTTGTTGGAACTCCGT+TGG | - | chr4_1:35343694-35343713 | Msa0545310:intron | 40.0% | |
| ! | GCTGAAGCTGCTTTGTATTT+GGG | - | chr4_1:35343803-35343822 | Msa0545310:intron | 40.0% |
| GATGAGTCGAAGTATGTTAG+TGG | - | chr4_1:35343830-35343849 | Msa0545310:intron | 40.0% | |
| GGTCATAATCTGGTCATAGA+TGG | - | chr4_1:35343851-35343870 | Msa0545310:intron | 40.0% | |
| CATAATCTGGTCATAGATGG+AGG | - | chr4_1:35343854-35343873 | Msa0545310:intron | 40.0% | |
| ACCAAAGGAACGCATTCCAT+GGG | + | chr4_1:35342547-35342566 | None:intergenic | 45.0% | |
| AACCAAAGGAACGCATTCCA+TGG | + | chr4_1:35342548-35342567 | None:intergenic | 45.0% | |
| !! | AAAGTAGCTCTGATCACAGG+TGG | - | chr4_1:35343158-35343177 | Msa0545310:CDS | 45.0% |
| CTTGGAAACGGTTGTGTTCA+CGG | + | chr4_1:35343354-35343373 | None:intergenic | 45.0% | |
| GACATCATGGTTAACAACGC+AGG | - | chr4_1:35343386-35343405 | Msa0545310:CDS | 45.0% | |
| GTTAACAACGCAGGCATAAC+CGG | - | chr4_1:35343395-35343414 | Msa0545310:CDS | 45.0% | |
| GTGATTGACACTAACTTGGC+TGG | - | chr4_1:35343467-35343486 | Msa0545310:intron | 45.0% | |
| ATTATGCTACCTCGTCGAAC+GGG | + | chr4_1:35343533-35343552 | None:intergenic | 45.0% | |
| GCTAGTGTTTGTGGATGCAT+AGG | - | chr4_1:35343560-35343579 | Msa0545310:intron | 45.0% | |
| AGTGTTTGTGGATGCATAGG+TGG | - | chr4_1:35343563-35343582 | Msa0545310:intron | 45.0% | |
| AAAAACACGGCCATCGAACT+TGG | - | chr4_1:35343638-35343657 | Msa0545310:intron | 45.0% | |
| ! | GGCTGAAGCTGCTTTGTATT+TGG | - | chr4_1:35343802-35343821 | Msa0545310:intron | 45.0% |
| CTTGTAAGTTGCGTCAAAGC+TGG | - | chr4_1:35344019-35344038 | Msa0545310:intron | 45.0% | |
| ACCAAAGGAACGCATTCCAT+GGG | + | chr4_1:35342547-35342566 | None:intergenic | 45.0% | |
| AACCAAAGGAACGCATTCCA+TGG | + | chr4_1:35342548-35342567 | None:intergenic | 45.0% | |
| !! | AAAGTAGCTCTGATCACAGG+TGG | - | chr4_1:35343158-35343177 | Msa0545310:CDS | 45.0% |
| CTTGGAAACGGTTGTGTTCA+CGG | + | chr4_1:35343354-35343373 | None:intergenic | 45.0% | |
| GACATCATGGTTAACAACGC+AGG | - | chr4_1:35343386-35343405 | Msa0545310:CDS | 45.0% | |
| GTTAACAACGCAGGCATAAC+CGG | - | chr4_1:35343395-35343414 | Msa0545310:CDS | 45.0% | |
| GTGATTGACACTAACTTGGC+TGG | - | chr4_1:35343467-35343486 | Msa0545310:intron | 45.0% | |
| ATTATGCTACCTCGTCGAAC+GGG | + | chr4_1:35343533-35343552 | None:intergenic | 45.0% | |
| GCTAGTGTTTGTGGATGCAT+AGG | - | chr4_1:35343560-35343579 | Msa0545310:intron | 45.0% | |
| AGTGTTTGTGGATGCATAGG+TGG | - | chr4_1:35343563-35343582 | Msa0545310:intron | 45.0% | |
| AAAAACACGGCCATCGAACT+TGG | - | chr4_1:35343638-35343657 | Msa0545310:intron | 45.0% | |
| ! | GGCTGAAGCTGCTTTGTATT+TGG | - | chr4_1:35343802-35343821 | Msa0545310:intron | 45.0% |
| CTTGTAAGTTGCGTCAAAGC+TGG | - | chr4_1:35344019-35344038 | Msa0545310:intron | 45.0% | |
| !!! | AATTATTCTAATTTTTTTTT+GGG | - | chr4_1:35342755-35342774 | Msa0545310:CDS | 5.0% |
| !!! | ATTATTGTTTTTTTTTTTAA+AGG | - | chr4_1:35343970-35343989 | Msa0545310:intron | 5.0% |
| !!! | AATTATTCTAATTTTTTTTT+GGG | - | chr4_1:35342755-35342774 | Msa0545310:CDS | 5.0% |
| !!! | ATTATTGTTTTTTTTTTTAA+AGG | - | chr4_1:35343970-35343989 | Msa0545310:intron | 5.0% |
| ACCCATGGAATGCGTTCCTT+TGG | - | chr4_1:35342543-35342562 | Msa0545310:three_prime_UTR | 50.0% | |
| CTTAGGGCAGCAGAAACCAA+AGG | + | chr4_1:35342562-35342581 | None:intergenic | 50.0% | |
| TGGTTTCTGCTGCCCTAAGA+AGG | - | chr4_1:35342563-35342582 | Msa0545310:three_prime_UTR | 50.0% | |
| !! | GGGAAAGTAGCTCTGATCAC+AGG | - | chr4_1:35343155-35343174 | Msa0545310:CDS | 50.0% |
| GTTGGAGAAGAGTCTTGCAG+TGG | + | chr4_1:35343204-35343223 | None:intergenic | 50.0% | |
| GCAAGACTCTTCTCCAACCA+CGG | - | chr4_1:35343206-35343225 | Msa0545310:CDS | 50.0% | |
| CTATAACGACTTGAGCTCCG+TGG | + | chr4_1:35343226-35343245 | None:intergenic | 50.0% | |
| TCGGAACAAAACACGCTGCT+AGG | - | chr4_1:35343498-35343517 | Msa0545310:intron | 50.0% | |
| CGGAACAAAACACGCTGCTA+GGG | - | chr4_1:35343499-35343518 | Msa0545310:intron | 50.0% | |
| TTATGCTACCTCGTCGAACG+GGG | + | chr4_1:35343532-35343551 | None:intergenic | 50.0% | |
| TTGTGGATGCATAGGTGGTG+TGG | - | chr4_1:35343568-35343587 | Msa0545310:intron | 50.0% | |
| ! | GGCGTGCTTTGAACTTGTGT+AGG | + | chr4_1:35343603-35343622 | None:intergenic | 50.0% |
| AGTTCAAAGCACGCCGTTGT+CGG | - | chr4_1:35343608-35343627 | Msa0545310:intron | 50.0% | |
| ! | GCAGCTTCAGCCACATCTTT+TGG | + | chr4_1:35343794-35343813 | None:intergenic | 50.0% |
| GGGCTCACGGTCGAAAATAA+TGG | - | chr4_1:35343875-35343894 | Msa0545310:intron | 50.0% | |
| ACCCATGGAATGCGTTCCTT+TGG | - | chr4_1:35342543-35342562 | Msa0545310:three_prime_UTR | 50.0% | |
| CTTAGGGCAGCAGAAACCAA+AGG | + | chr4_1:35342562-35342581 | None:intergenic | 50.0% | |
| TGGTTTCTGCTGCCCTAAGA+AGG | - | chr4_1:35342563-35342582 | Msa0545310:three_prime_UTR | 50.0% | |
| !! | GGGAAAGTAGCTCTGATCAC+AGG | - | chr4_1:35343155-35343174 | Msa0545310:CDS | 50.0% |
| GTTGGAGAAGAGTCTTGCAG+TGG | + | chr4_1:35343204-35343223 | None:intergenic | 50.0% | |
| GCAAGACTCTTCTCCAACCA+CGG | - | chr4_1:35343206-35343225 | Msa0545310:CDS | 50.0% | |
| CTATAACGACTTGAGCTCCG+TGG | + | chr4_1:35343226-35343245 | None:intergenic | 50.0% | |
| TCGGAACAAAACACGCTGCT+AGG | - | chr4_1:35343498-35343517 | Msa0545310:intron | 50.0% | |
| CGGAACAAAACACGCTGCTA+GGG | - | chr4_1:35343499-35343518 | Msa0545310:intron | 50.0% | |
| TTATGCTACCTCGTCGAACG+GGG | + | chr4_1:35343532-35343551 | None:intergenic | 50.0% | |
| TTGTGGATGCATAGGTGGTG+TGG | - | chr4_1:35343568-35343587 | Msa0545310:intron | 50.0% | |
| ! | GGCGTGCTTTGAACTTGTGT+AGG | + | chr4_1:35343603-35343622 | None:intergenic | 50.0% |
| AGTTCAAAGCACGCCGTTGT+CGG | - | chr4_1:35343608-35343627 | Msa0545310:intron | 50.0% | |
| ! | GCAGCTTCAGCCACATCTTT+TGG | + | chr4_1:35343794-35343813 | None:intergenic | 50.0% |
| GGGCTCACGGTCGAAAATAA+TGG | - | chr4_1:35343875-35343894 | Msa0545310:intron | 50.0% | |
| AACGACTTGAGCTCCGTGGT+TGG | + | chr4_1:35343222-35343241 | None:intergenic | 55.0% | |
| GTAATGATCCCCGTTCGACG+AGG | - | chr4_1:35343521-35343540 | Msa0545310:intron | 55.0% | |
| GTTCAAAGCACGCCGTTGTC+GGG | - | chr4_1:35343609-35343628 | Msa0545310:intron | 55.0% | |
| GCCATCGAACTTGGACCGTA+CGG | - | chr4_1:35343647-35343666 | Msa0545310:intron | 55.0% | |
| ACCGTACGGTCCAAGTTCGA+TGG | + | chr4_1:35343651-35343670 | None:intergenic | 55.0% | |
| GGTCATAGATGGAGGGCTCA+CGG | - | chr4_1:35343862-35343881 | Msa0545310:intron | 55.0% | |
| AACGACTTGAGCTCCGTGGT+TGG | + | chr4_1:35343222-35343241 | None:intergenic | 55.0% | |
| GTAATGATCCCCGTTCGACG+AGG | - | chr4_1:35343521-35343540 | Msa0545310:intron | 55.0% | |
| GTTCAAAGCACGCCGTTGTC+GGG | - | chr4_1:35343609-35343628 | Msa0545310:intron | 55.0% | |
| GCCATCGAACTTGGACCGTA+CGG | - | chr4_1:35343647-35343666 | Msa0545310:intron | 55.0% | |
| ACCGTACGGTCCAAGTTCGA+TGG | + | chr4_1:35343651-35343670 | None:intergenic | 55.0% | |
| GGTCATAGATGGAGGGCTCA+CGG | - | chr4_1:35343862-35343881 | Msa0545310:intron | 55.0% | |
| CTGATCACAGGTGGTGCGAG+CGG | - | chr4_1:35343167-35343186 | Msa0545310:CDS | 60.0% | |
| CTGATCACAGGTGGTGCGAG+CGG | - | chr4_1:35343167-35343186 | Msa0545310:CDS | 60.0% | |
| ACAGGTGGTGCGAGCGGCAT+CGG | - | chr4_1:35343173-35343192 | Msa0545310:CDS | 65.0% | |
| ACAGGTGGTGCGAGCGGCAT+CGG | - | chr4_1:35343173-35343192 | Msa0545310:CDS | 65.0% | |
| !! | TGGTGCGAGCGGCATCGGCG+AGG | - | chr4_1:35343178-35343197 | Msa0545310:CDS | 75.0% |
| !! | TGGTGCGAGCGGCATCGGCG+AGG | - | chr4_1:35343178-35343197 | Msa0545310:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 35342474 | 35344151 | 35342474 | ID=Msa0545310;Name=Msa0545310 |
| chr4_1 | mRNA | 35342474 | 35344151 | 35342474 | ID=Msa0545310-mRNA-1;Parent=Msa0545310;Name=Msa0545310-mRNA-1;_AED=0.01;_eAED=0.01;_QI=73|1|1|1|1|1|2|226|271 |
| chr4_1 | exon | 35342474 | 35343477 | 35342474 | ID=Msa0545310-mRNA-1:exon:8966;Parent=Msa0545310-mRNA-1 |
| chr4_1 | exon | 35344041 | 35344151 | 35344041 | ID=Msa0545310-mRNA-1:exon:8965;Parent=Msa0545310-mRNA-1 |
| chr4_1 | five_prime_UTR | 35344079 | 35344151 | 35344079 | ID=Msa0545310-mRNA-1:five_prime_utr;Parent=Msa0545310-mRNA-1 |
| chr4_1 | CDS | 35344041 | 35344078 | 35344041 | ID=Msa0545310-mRNA-1:cds;Parent=Msa0545310-mRNA-1 |
| chr4_1 | CDS | 35342700 | 35343477 | 35342700 | ID=Msa0545310-mRNA-1:cds;Parent=Msa0545310-mRNA-1 |
| chr4_1 | three_prime_UTR | 35342474 | 35342699 | 35342474 | ID=Msa0545310-mRNA-1:three_prime_utr;Parent=Msa0545310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
