Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547120 | XP_013455999.1 | 93.976 | 498 | 22 | 1 | 87 | 584 | 1 | 490 | 0.0 | 948 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547120 | sp|Q3EDG5|TPST_ARATH | 56.250 | 512 | 194 | 9 | 87 | 583 | 3 | 499 | 0.0 | 546 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547120 | A0A072UVZ8 | 93.976 | 498 | 22 | 1 | 87 | 584 | 1 | 490 | 0.0 | 948 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0547120 | Msa0642960 | 0.945353 | 3.576278e-104 | -8.615850e-47 |
| Msa0547120 | Msa1346840 | 0.804154 | 2.474811e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547120 | MtrunA17_Chr4g0028941 | 94.647 | 411 | 14 | 1 | 87 | 497 | 1 | 403 | 0.0 | 817 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547120 | AT1G08030.2 | 56.250 | 512 | 194 | 9 | 87 | 583 | 3 | 499 | 0.0 | 546 |
| Msa0547120 | AT1G08030.1 | 56.250 | 512 | 194 | 9 | 87 | 583 | 3 | 499 | 0.0 | 546 |
Find 126 sgRNAs with CRISPR-Local
Find 413 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATTGTATCCGAATTATT+TGG | 0.165247 | 4_1:+39867559 | Msa0547120:CDS |
| ACAACATCAATTTGCGTTAT+AGG | 0.201379 | 4_1:-39872619 | None:intergenic |
| TCTTCACTTGATAGAGAAAT+TGG | 0.211342 | 4_1:+39866876 | Msa0547120:CDS |
| CAACATCAATTTGCGTTATA+GGG | 0.215381 | 4_1:-39872618 | None:intergenic |
| TTTATGTTGCTTATTGAAAA+TGG | 0.216862 | 4_1:-39871755 | None:intergenic |
| TAAGCGCGTCCTCCGGTTCT+AGG | 0.245466 | 4_1:-39866948 | None:intergenic |
| GGATTTCGTGTTTGTAACTA+TGG | 0.247909 | 4_1:+39866647 | Msa0547120:CDS |
| AAACCTGTATTTCTAATTTA+CGG | 0.254363 | 4_1:+39870675 | Msa0547120:CDS |
| TTCGCGTTTCTCATTCTCTT+TGG | 0.259581 | 4_1:+39866687 | Msa0547120:CDS |
| TTTCTCATTCTCTTTGGATT+AGG | 0.273342 | 4_1:+39866693 | Msa0547120:CDS |
| GACAGAATTACGTTCAGATT+TGG | 0.276113 | 4_1:+39872567 | Msa0547120:three_prime_UTR |
| ACTTGTGTGGTCACAAGATT+TGG | 0.284053 | 4_1:-39872876 | None:intergenic |
| GGCTTTACGCTTGCGCTCTA+AGG | 0.304421 | 4_1:+39868595 | Msa0547120:CDS |
| AAATGAAAATTAAAGTAAAA+AGG | 0.309257 | 4_1:-39872685 | None:intergenic |
| TAAATTTGTACAACAGTGTT+TGG | 0.335275 | 4_1:-39866510 | None:intergenic |
| ACCACAGACGTTCTCTCCTT+TGG | 0.337073 | 4_1:-39868464 | None:intergenic |
| GTACAGAAATATAAGGTTCT+TGG | 0.338238 | 4_1:+39869727 | Msa0547120:CDS |
| GAAGAACGTCGAAGGTAAAA+AGG | 0.340864 | 4_1:+39872482 | Msa0547120:CDS |
| GACCTACCTGTATTGAAATT+CGG | 0.342308 | 4_1:-39866546 | None:intergenic |
| ACCTGATGTTCACTGCTATC+AGG | 0.344360 | 4_1:-39870364 | None:intergenic |
| AGGAGATGCGTCGGCCTGAT+TGG | 0.351990 | 4_1:-39870703 | None:intergenic |
| TTGTTCAATCATCAGGTTGC+AGG | 0.356317 | 4_1:+39869655 | Msa0547120:CDS |
| GAGGCTACTTCAACTGAAAA+TGG | 0.362347 | 4_1:+39870499 | Msa0547120:CDS |
| GAGTAAGCACATTGGATATC+TGG | 0.362596 | 4_1:+39868624 | Msa0547120:CDS |
| TGCAAATGTGGTTGGTTCTC+AGG | 0.362875 | 4_1:+39869963 | Msa0547120:CDS |
| ACCTACCTGTATTGAAATTC+GGG | 0.364045 | 4_1:-39866545 | None:intergenic |
| CTCCTCTTTGAAGAGGATTC+CGG | 0.368588 | 4_1:+39870721 | Msa0547120:CDS |
| TTCTTGCATGTTCCTAGAAC+CGG | 0.375648 | 4_1:+39866936 | Msa0547120:CDS |
| TAGGGACGGTGATGGAAATA+TGG | 0.387354 | 4_1:-39872600 | None:intergenic |
| GCAAAATCTTTCATATCATA+AGG | 0.389952 | 4_1:-39869131 | None:intergenic |
| AGAGTGAATCAGCAGCATTT+TGG | 0.391134 | 4_1:+39872742 | Msa0547120:three_prime_UTR |
| CATTGATTTCAGATGACTGT+TGG | 0.394223 | 4_1:+39870632 | Msa0547120:intron |
| GTTAATCGGATCCCTAAGTA+TGG | 0.402475 | 4_1:-39868489 | None:intergenic |
| GCTCCGTAAATTAGAAATAC+AGG | 0.404958 | 4_1:-39870678 | None:intergenic |
| AGCTGCTGGAGAACCTCTTC+GGG | 0.406385 | 4_1:-39871685 | None:intergenic |
| CGAGGACATTCCAAATAATT+CGG | 0.406698 | 4_1:-39867569 | None:intergenic |
| TGGTGGATTGTTCAATCATC+AGG | 0.413412 | 4_1:+39869648 | Msa0547120:CDS |
| GTACTAAAGACTCGGTTAAT+CGG | 0.413484 | 4_1:-39868503 | None:intergenic |
| CATCAATCATCCTGTGGCTT+GGG | 0.413830 | 4_1:+39869172 | Msa0547120:CDS |
| TAGCTGCTGGAGAACCTCTT+CGG | 0.416269 | 4_1:-39871686 | None:intergenic |
| ATGCTGCTGATTCACTCTAA+TGG | 0.428807 | 4_1:-39872737 | None:intergenic |
| ATAGTATCTAGGCTGGTGTT+TGG | 0.429323 | 4_1:-39870006 | None:intergenic |
| GAGGGAAGCTAGGTATAGTA+AGG | 0.432307 | 4_1:+39869082 | Msa0547120:intron |
| GGAGATGCGTCGGCCTGATT+GGG | 0.432707 | 4_1:-39870702 | None:intergenic |
| TGTGTTGCAGATGTCAAGTT+TGG | 0.434227 | 4_1:-39868569 | None:intergenic |
| TCCTGATAGCAGTGAACATC+AGG | 0.444438 | 4_1:+39870363 | Msa0547120:CDS |
| AGTAGTTAGGTCATAATTTG+TGG | 0.444790 | 4_1:+39872508 | Msa0547120:three_prime_UTR |
| GCTTGGGATATTGTACATAA+TGG | 0.445241 | 4_1:+39869188 | Msa0547120:CDS |
| CGCTTGCGCTCTAAGGCTAA+AGG | 0.446556 | 4_1:+39868602 | Msa0547120:CDS |
| AATTAAATTGCAGGAGAGAT+GGG | 0.449923 | 4_1:+39872351 | Msa0547120:intron |
| TAAGACATACCCTAGCAAAT+AGG | 0.455359 | 4_1:-39868682 | None:intergenic |
| CTAGATACTATTGAAAATAC+AGG | 0.455547 | 4_1:+39870018 | Msa0547120:CDS |
| ATTGATTTCAGATGACTGTT+GGG | 0.457181 | 4_1:+39870633 | Msa0547120:intron |
| CGTTAAGAGACCGTAGCTGC+TGG | 0.457921 | 4_1:-39871699 | None:intergenic |
| AGAAGATAAACATATCCTTA+AGG | 0.461785 | 4_1:+39866902 | Msa0547120:CDS |
| ACATCAATCATCCTGTGGCT+TGG | 0.470813 | 4_1:+39869171 | Msa0547120:CDS |
| ACCTCCTTTGTAAAGTTCAC+CGG | 0.471243 | 4_1:-39870740 | None:intergenic |
| ACATAATGGAGCCACATTCC+AGG | 0.475210 | 4_1:+39869202 | Msa0547120:CDS |
| TGCAACAATGTTTGCAAATG+TGG | 0.475585 | 4_1:+39869951 | Msa0547120:CDS |
| AATTTACGGAGCTCCCAATC+AGG | 0.480734 | 4_1:+39870689 | Msa0547120:CDS |
| ATCTTGCAGAAGAGACTTGA+CGG | 0.481969 | 4_1:+39869889 | Msa0547120:intron |
| TCATTGTGTACAGAAATATA+AGG | 0.483519 | 4_1:+39869720 | Msa0547120:CDS |
| AAATTAAATTGCAGGAGAGA+TGG | 0.487278 | 4_1:+39872350 | Msa0547120:intron |
| ACAACAGTGTTTGGATTCGA+TGG | 0.496665 | 4_1:-39866501 | None:intergenic |
| AAGGGAATGAATATTGTTGA+GGG | 0.497432 | 4_1:+39869101 | Msa0547120:CDS |
| GTCTGTGGTTACCATACTTA+GGG | 0.499330 | 4_1:+39868478 | Msa0547120:CDS |
| TACAGAATAGCACCTCGGAC+AGG | 0.502163 | 4_1:+39870467 | Msa0547120:intron |
| GCACATTGGATATCTGGCCT+TGG | 0.504280 | 4_1:+39868630 | Msa0547120:CDS |
| ATGAAAATAAGCGCGTCCTC+CGG | 0.506987 | 4_1:-39866955 | None:intergenic |
| CTCGGACAGGGGAGCAAGCG+AGG | 0.507493 | 4_1:+39870480 | Msa0547120:CDS |
| CGTCTGTGGTTACCATACTT+AGG | 0.507713 | 4_1:+39868477 | Msa0547120:CDS |
| TTTGTACGAATAAGAAAAGA+AGG | 0.509561 | 4_1:-39872444 | None:intergenic |
| ATTGAAATGAAACGCTTGAA+AGG | 0.509620 | 4_1:-39866373 | None:intergenic |
| TTAATTTACAGAGGGAAGCT+AGG | 0.513808 | 4_1:+39869072 | Msa0547120:intron |
| ATAAAATGAGAATATACAAA+TGG | 0.517101 | 4_1:+39872799 | Msa0547120:three_prime_UTR |
| TGAGAGAGTTGTGAAGAGTT+GGG | 0.520453 | 4_1:+39866848 | Msa0547120:CDS |
| GTGAGAGAGTTGTGAAGAGT+TGG | 0.527357 | 4_1:+39866847 | Msa0547120:CDS |
| TGATTGATGTATTCTTGTAA+AGG | 0.530928 | 4_1:-39869158 | None:intergenic |
| GTCTCTTAACGATCTTGACT+TGG | 0.536514 | 4_1:+39871711 | Msa0547120:CDS |
| ATCAATTTGCGTTATAGGGA+CGG | 0.541133 | 4_1:-39872614 | None:intergenic |
| TGAGAGAAGACCTATTTGCT+AGG | 0.541229 | 4_1:+39868672 | Msa0547120:CDS |
| TTGCGTTATAGGGACGGTGA+TGG | 0.543850 | 4_1:-39872608 | None:intergenic |
| AATAGGTCTTCTCTCATCCA+TGG | 0.546951 | 4_1:-39868665 | None:intergenic |
| CTTGGAAGTATCTTGTTCCA+TGG | 0.549166 | 4_1:+39868648 | Msa0547120:CDS |
| AAGAGGTTCTCCAGCAGCTA+CGG | 0.550011 | 4_1:+39871689 | Msa0547120:CDS |
| ATAAGTTGCGATTTGATCCA+AGG | 0.550266 | 4_1:+39867600 | Msa0547120:CDS |
| CTTGACGGTATGTTATATGT+TGG | 0.550944 | 4_1:+39869904 | Msa0547120:CDS |
| TAAGGGAATGAATATTGTTG+AGG | 0.552643 | 4_1:+39869100 | Msa0547120:CDS |
| AATTAACGTAATGAAGTTGA+AGG | 0.555959 | 4_1:-39866400 | None:intergenic |
| ACAGAATAGCACCTCGGACA+GGG | 0.556247 | 4_1:+39870468 | Msa0547120:intron |
| CTCGCTTGCTCCCCTGTCCG+AGG | 0.558655 | 4_1:-39870479 | None:intergenic |
| GAGATCCCGAATTTCAATAC+AGG | 0.561270 | 4_1:+39866540 | Msa0547120:CDS |
| CTTGACATCTGCAACACAGA+TGG | 0.565350 | 4_1:+39868574 | Msa0547120:CDS |
| GACGCATCTCCTCTTTGAAG+AGG | 0.567353 | 4_1:+39870714 | Msa0547120:CDS |
| ACAATGTTTGCAAATGTGGT+TGG | 0.574812 | 4_1:+39869955 | Msa0547120:CDS |
| GATGACTGTTGGGAAACTCA+TGG | 0.582509 | 4_1:+39870643 | Msa0547120:intron |
| CAACAGTGTTTGGATTCGAT+GGG | 0.583775 | 4_1:-39866500 | None:intergenic |
| CAGAATAGCACCTCGGACAG+GGG | 0.587219 | 4_1:+39870469 | Msa0547120:intron |
| ATATGTGCTACAAGTTGCAA+AGG | 0.593967 | 4_1:+39869753 | Msa0547120:CDS |
| TGCAAGAAGAAGAACGTCGA+AGG | 0.596502 | 4_1:+39872474 | Msa0547120:CDS |
| GAGAGAAGACCTATTTGCTA+GGG | 0.597997 | 4_1:+39868673 | Msa0547120:CDS |
| TCCGGTGAACTTTACAAAGG+AGG | 0.598156 | 4_1:+39870739 | Msa0547120:CDS |
| ATATATGTAATGAAGTATGG+TGG | 0.610442 | 4_1:+39869631 | Msa0547120:intron |
| CACCGGAATCCTCTTCAAAG+AGG | 0.618564 | 4_1:-39870723 | None:intergenic |
| CATGACATCTAAATTTCCAA+AGG | 0.618722 | 4_1:+39868448 | Msa0547120:CDS |
| CACAAAACCCTACCCATCAG+TGG | 0.618918 | 4_1:-39872654 | None:intergenic |
| TCCAAAGGAGAGAACGTCTG+TGG | 0.619125 | 4_1:+39868463 | Msa0547120:CDS |
| ATATGTCATCATCCTGTGGA+AGG | 0.619171 | 4_1:+39872393 | Msa0547120:CDS |
| AGGGAAGCTAGGTATAGTAA+GGG | 0.619399 | 4_1:+39869083 | Msa0547120:CDS |
| ACGACTTCAAGTTCCCGAAG+AGG | 0.619922 | 4_1:+39871672 | Msa0547120:CDS |
| CTAATGTAAGAACCTTCCAC+AGG | 0.624624 | 4_1:-39872405 | None:intergenic |
| TGTACAATATCCCAAGCCAC+AGG | 0.629300 | 4_1:-39869182 | None:intergenic |
| CATGGAACAAGATACTTCCA+AGG | 0.631377 | 4_1:-39868647 | None:intergenic |
| ATTCGTAAGTACTAAAGACT+CGG | 0.636215 | 4_1:-39868511 | None:intergenic |
| GGCTAAAGGAGTAAGCACAT+TGG | 0.636429 | 4_1:+39868616 | Msa0547120:CDS |
| ATGAATATGTCATCATCCTG+TGG | 0.640198 | 4_1:+39872389 | Msa0547120:CDS |
| GTTATATGTTGGTCTTACTG+AGG | 0.642498 | 4_1:+39869915 | Msa0547120:CDS |
| TTGCATGTTCCTAGAACCGG+AGG | 0.645553 | 4_1:+39866939 | Msa0547120:CDS |
| TCTTCAAAGAGGAGATGCGT+CGG | 0.647818 | 4_1:-39870712 | None:intergenic |
| CGCAACTTATCATAAGATCG+AGG | 0.653437 | 4_1:-39867587 | None:intergenic |
| TACCTCAGTGATCAGCGATG+AGG | 0.654015 | 4_1:-39871779 | None:intergenic |
| GTGCTGAAGTACCTGGAATG+TGG | 0.658715 | 4_1:-39869213 | None:intergenic |
| GATTCCGGTGAACTTTACAA+AGG | 0.673848 | 4_1:+39870736 | Msa0547120:CDS |
| AGAATACATCAATCATCCTG+TGG | 0.692934 | 4_1:+39869166 | Msa0547120:CDS |
| TGCAATACAGAATAGCACCT+CGG | 0.695717 | 4_1:+39870462 | Msa0547120:intron |
| AACCTCATCGCTGATCACTG+AGG | 0.754324 | 4_1:+39871777 | Msa0547120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATCCAAAAAAAAAAAAA+AGG | - | chr4_1:39869439-39869458 | None:intergenic | 10.0% |
| !!! | TACTTTTCTATTTTAAATTA+CGG | - | chr4_1:39871101-39871120 | None:intergenic | 10.0% |
| !! | TTTAAAAATTCAATAAGATA+TGG | - | chr4_1:39872100-39872119 | None:intergenic | 10.0% |
| !!! | AAACTTGATATTTTTTATTA+TGG | + | chr4_1:39872118-39872137 | Msa0547120:intron | 10.0% |
| !! | AAATGAAAATTAAAGTAAAA+AGG | - | chr4_1:39872688-39872707 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTGTGATAG+TGG | + | chr4_1:39866791-39866810 | Msa0547120:intron | 15.0% |
| !!! | ATTGGTAAGTTTTTTTATTT+GGG | + | chr4_1:39866976-39866995 | Msa0547120:intron | 15.0% |
| !! | TATTAATCAAATTCATTAAC+CGG | + | chr4_1:39867014-39867033 | Msa0547120:intron | 15.0% |
| !! | AAAAAAAATTGCAACAAAAA+GGG | - | chr4_1:39867663-39867682 | None:intergenic | 15.0% |
| !! | AAAAAAAAATTGCAACAAAA+AGG | - | chr4_1:39867664-39867683 | None:intergenic | 15.0% |
| !! | TTAATCTTCATATAAGAATT+GGG | - | chr4_1:39868827-39868846 | None:intergenic | 15.0% |
| !! | ATTAATCTTCATATAAGAAT+TGG | - | chr4_1:39868828-39868847 | None:intergenic | 15.0% |
| !!! | AACATATTTTAAAAGTATGA+AGG | - | chr4_1:39869010-39869029 | None:intergenic | 15.0% |
| !! | AAAAAAAAGGATGATATTAA+TGG | - | chr4_1:39869426-39869445 | None:intergenic | 15.0% |
| !!! | ATCATCCTTTTTTTTTTTTT+TGG | + | chr4_1:39869431-39869450 | Msa0547120:intron | 15.0% |
| !!! | TGTAATATTTTCAGAATATA+TGG | + | chr4_1:39870176-39870195 | Msa0547120:intron | 15.0% |
| !!! | GTAATATTTTCAGAATATAT+GGG | + | chr4_1:39870177-39870196 | Msa0547120:intron | 15.0% |
| !!! | AATATGGTGATTTTATTTTA+TGG | + | chr4_1:39870561-39870580 | Msa0547120:intron | 15.0% |
| !!! | TACTTTTCTTTTCTAAATTA+CGG | + | chr4_1:39870964-39870983 | Msa0547120:intron | 15.0% |
| !! | AATCACAAAATATTTAGAAA+GGG | - | chr4_1:39871644-39871663 | None:intergenic | 15.0% |
| !! | AAATCACAAAATATTTAGAA+AGG | - | chr4_1:39871645-39871664 | None:intergenic | 15.0% |
| !! | AAAACGGATAAAAAAAAATA+TGG | + | chr4_1:39871906-39871925 | Msa0547120:intron | 15.0% |
| !! | CAAATTACAAAATAACAAAT+TGG | + | chr4_1:39871990-39872009 | Msa0547120:intron | 15.0% |
| !!! | AATTTAATTTAACACAGTAA+AGG | - | chr4_1:39872340-39872359 | None:intergenic | 15.0% |
| !!! | ACTTTAATTTTCATTTTTGT+TGG | + | chr4_1:39872692-39872711 | Msa0547120:three_prime_UTR | 15.0% |
| !!! | TATTCTCATTTTATAAACTT+TGG | - | chr4_1:39872793-39872812 | None:intergenic | 15.0% |
| !! | ATAAAATGAGAATATACAAA+TGG | + | chr4_1:39872799-39872818 | Msa0547120:three_prime_UTR | 15.0% |
| !! | AAAACAAAACAGAAAAACAA+AGG | + | chr4_1:39866455-39866474 | Msa0547120:CDS | 20.0% |
| !! | AAACAAAACAGAAAAACAAA+GGG | + | chr4_1:39866456-39866475 | Msa0547120:CDS | 20.0% |
| !!! | TTGTTTTGTTTTGTTGTTTT+TGG | + | chr4_1:39866760-39866779 | Msa0547120:intron | 20.0% |
| !!! | CATTGGTAAGTTTTTTTATT+TGG | + | chr4_1:39866975-39866994 | Msa0547120:intron | 20.0% |
| !! | ATTAATCAAATTCATTAACC+GGG | + | chr4_1:39867015-39867034 | Msa0547120:intron | 20.0% |
| !! | TTGATAGAATTGATATAGAT+TGG | + | chr4_1:39867151-39867170 | Msa0547120:intron | 20.0% |
| !!! | AATTGATATAGATTGGATTT+TGG | + | chr4_1:39867158-39867177 | Msa0547120:intron | 20.0% |
| !!! | GAATTATTTTTGTTTGAACA+TGG | - | chr4_1:39867486-39867505 | None:intergenic | 20.0% |
| !!! | AAATAACATAAAAGCATTTG+TGG | - | chr4_1:39868050-39868069 | None:intergenic | 20.0% |
| !!! | TTTCACAGTAGATTTTTAAA+TGG | - | chr4_1:39868334-39868353 | None:intergenic | 20.0% |
| !!! | TGCTTTTTTTGATATGTTTA+TGG | + | chr4_1:39868861-39868880 | Msa0547120:intron | 20.0% |
| !!! | ATATAGACTTTAATTTACAG+AGG | + | chr4_1:39869063-39869082 | Msa0547120:intron | 20.0% |
| !!! | TATAGACTTTAATTTACAGA+GGG | + | chr4_1:39869064-39869083 | Msa0547120:intron | 20.0% |
| !! | TAATATTCAAATGATAGCTA+TGG | - | chr4_1:39869493-39869512 | None:intergenic | 20.0% |
| !!! | TTGTATTTTCAGAGTTTTTT+TGG | + | chr4_1:39869596-39869615 | Msa0547120:intron | 20.0% |
| !! | TTGATATATGTAATGAAGTA+TGG | + | chr4_1:39869628-39869647 | Msa0547120:intron | 20.0% |
| !!! | GTTGCATTTTAATTAACATA+TGG | + | chr4_1:39870291-39870310 | Msa0547120:intron | 20.0% |
| !!! | AAACCTGTATTTCTAATTTA+CGG | + | chr4_1:39870675-39870694 | Msa0547120:CDS | 20.0% |
| !!! | TAATGATAGTGAAAGAATTA+TGG | - | chr4_1:39870801-39870820 | None:intergenic | 20.0% |
| !! | TTAGTAATACAAAAGTTATC+AGG | - | chr4_1:39871203-39871222 | None:intergenic | 20.0% |
| !! | TATTACTAAACTTATTTCAC+AGG | + | chr4_1:39871214-39871233 | Msa0547120:intron | 20.0% |
| !!! | ATAGAATGTTTTTTTCAACA+CGG | - | chr4_1:39871325-39871344 | None:intergenic | 20.0% |
| !!! | TATTACATATCCTTTTTTAC+TGG | + | chr4_1:39871392-39871411 | Msa0547120:intron | 20.0% |
| !! | TATACATATTGGAATATTGA+TGG | + | chr4_1:39871460-39871479 | Msa0547120:intron | 20.0% |
| !!! | TTTATGTTGCTTATTGAAAA+TGG | - | chr4_1:39871758-39871777 | None:intergenic | 20.0% |
| !!! | TTGGTAGTCTAAATTTTAAA+CGG | + | chr4_1:39871880-39871899 | Msa0547120:intron | 20.0% |
| !!! | AAATTTTAAACGGCTTAAAA+CGG | + | chr4_1:39871890-39871909 | Msa0547120:intron | 20.0% |
| !! | GATAAAAAAAAATATGGTCA+CGG | + | chr4_1:39871912-39871931 | Msa0547120:intron | 20.0% |
| !! | AAAAAGGTTTTTGCTGAAAA+TGG | - | chr4_1:39866343-39866362 | None:intergenic | 25.0% |
| !!! | GAAAGGTTTTGAAATGAAAA+AGG | - | chr4_1:39866359-39866378 | None:intergenic | 25.0% |
| ! | AATTAACGTAATGAAGTTGA+AGG | - | chr4_1:39866403-39866422 | None:intergenic | 25.0% |
| ! | AAAATACAGAAAAACTTTCC+CGG | - | chr4_1:39866429-39866448 | None:intergenic | 25.0% |
| ! | TAAATTTGTACAACAGTGTT+TGG | - | chr4_1:39866513-39866532 | None:intergenic | 25.0% |
| ! | AGAAGATAAACATATCCTTA+AGG | + | chr4_1:39866902-39866921 | Msa0547120:CDS | 25.0% |
| ! | AGAAAAACAACAAATCCTTA+AGG | - | chr4_1:39866920-39866939 | None:intergenic | 25.0% |
| !! | ACTAAGTCTATTAAGTTTTG+TGG | + | chr4_1:39867411-39867430 | Msa0547120:intron | 25.0% |
| !!! | TTTTTTTATGCAGCTTTTTG+AGG | + | chr4_1:39867537-39867556 | Msa0547120:intron | 25.0% |
| ! | GAAATTGTATCCGAATTATT+TGG | + | chr4_1:39867559-39867578 | Msa0547120:CDS | 25.0% |
| ! | GACAACATAACAAATGTTAA+AGG | - | chr4_1:39867898-39867917 | None:intergenic | 25.0% |
| ! | AAAGCGTAAAAACTTGTATT+AGG | + | chr4_1:39868121-39868140 | Msa0547120:intron | 25.0% |
| !!! | TTCAATAATGGACTAATAGA+AGG | - | chr4_1:39868300-39868319 | None:intergenic | 25.0% |
| ! | GAGAAATGACATTTCAATAA+TGG | - | chr4_1:39868312-39868331 | None:intergenic | 25.0% |
| ! | GGAAAATAAGCAATATATGA+TGG | - | chr4_1:39868358-39868377 | None:intergenic | 25.0% |
| !! | TTAACAGTCTACATTTTTGT+TGG | - | chr4_1:39868409-39868428 | None:intergenic | 25.0% |
| !! | TAGTACTTACGAATTTTCAA+TGG | + | chr4_1:39868520-39868539 | Msa0547120:CDS | 25.0% |
| ! | AATGCTTCTAAATTCATACA+AGG | + | chr4_1:39868748-39868767 | Msa0547120:intron | 25.0% |
| ! | AATTCATACAAGGTTGTAAA+AGG | + | chr4_1:39868758-39868777 | Msa0547120:intron | 25.0% |
| ! | TATCATAAACAAGACATGAA+TGG | - | chr4_1:39868916-39868935 | None:intergenic | 25.0% |
| ! | ATGTACATCAAATGGAAATA+TGG | - | chr4_1:39869036-39869055 | None:intergenic | 25.0% |
| ! | GCAAAATCTTTCATATCATA+AGG | - | chr4_1:39869134-39869153 | None:intergenic | 25.0% |
| ! | TGATTGATGTATTCTTGTAA+AGG | - | chr4_1:39869161-39869180 | None:intergenic | 25.0% |
| ! | AGAAAACAGTTAAACATTGA+TGG | - | chr4_1:39869298-39869317 | None:intergenic | 25.0% |
| !!! | AAAATGCATCCATATTTTTG+AGG | - | chr4_1:39869388-39869407 | None:intergenic | 25.0% |
| ! | ATATTACTTTGCAAGAAAGA+TGG | + | chr4_1:39869507-39869526 | Msa0547120:intron | 25.0% |
| ! | ATAAACAACTAGAACAAACA+CGG | - | chr4_1:39869533-39869552 | None:intergenic | 25.0% |
| !!! | TAAGTTTTTCGATTGCAATT+GGG | - | chr4_1:39869572-39869591 | None:intergenic | 25.0% |
| !!! | ATAAGTTTTTCGATTGCAAT+TGG | - | chr4_1:39869573-39869592 | None:intergenic | 25.0% |
| ! | ATATATGTAATGAAGTATGG+TGG | + | chr4_1:39869631-39869650 | Msa0547120:intron | 25.0% |
| ! | TCATTGTGTACAGAAATATA+AGG | + | chr4_1:39869720-39869739 | Msa0547120:CDS | 25.0% |
| ! | TACAAGTACATACCTTAAAA+AGG | - | chr4_1:39869868-39869887 | None:intergenic | 25.0% |
| !! | CTGTATTTTCAATAGTATCT+AGG | - | chr4_1:39870020-39870039 | None:intergenic | 25.0% |
| ! | CTAGATACTATTGAAAATAC+AGG | + | chr4_1:39870018-39870037 | Msa0547120:CDS | 25.0% |
| !!! | TTTTTTCTCAAGTTAGAAGA+AGG | + | chr4_1:39870078-39870097 | Msa0547120:intron | 25.0% |
| !! | TTTTTCTCAAGTTAGAAGAA+GGG | + | chr4_1:39870079-39870098 | Msa0547120:intron | 25.0% |
| !! | ATATTTTCAGAATATATGGG+TGG | + | chr4_1:39870180-39870199 | Msa0547120:intron | 25.0% |
| !! | TATTTTCAGAATATATGGGT+GGG | + | chr4_1:39870181-39870200 | Msa0547120:intron | 25.0% |
| !!! | TCATGTTTTGAAATGATCTT+TGG | + | chr4_1:39870225-39870244 | Msa0547120:intron | 25.0% |
| !!! | CATGTTTTGAAATGATCTTT+GGG | + | chr4_1:39870226-39870245 | Msa0547120:intron | 25.0% |
| !! | TTGTTATTGAGGTTTGAATA+TGG | + | chr4_1:39870414-39870433 | Msa0547120:intron | 25.0% |
| ! | AATGAGAAATGGATAATATC+TGG | - | chr4_1:39870592-39870611 | None:intergenic | 25.0% |
| ! | TAAGCTGATAAAATGAGAAA+TGG | - | chr4_1:39870603-39870622 | None:intergenic | 25.0% |
| !! | TTTCTCATTTTATCAGCTTA+CGG | + | chr4_1:39870603-39870622 | Msa0547120:intron | 25.0% |
| ! | ATTCTTTCACTATCATTATG+TGG | + | chr4_1:39870803-39870822 | Msa0547120:intron | 25.0% |
| ! | TGTATACATTTATTACTGCT+TGG | + | chr4_1:39870862-39870881 | Msa0547120:intron | 25.0% |
| ! | GTATACATTTATTACTGCTT+GGG | + | chr4_1:39870863-39870882 | Msa0547120:intron | 25.0% |
| ! | AAATTACGGACACTATAAAA+TGG | + | chr4_1:39870978-39870997 | Msa0547120:intron | 25.0% |
| ! | TCAACTTGAACAATTTAACA+TGG | + | chr4_1:39871245-39871264 | Msa0547120:intron | 25.0% |
| ! | CAAATTGCATCTATACATAT+TGG | + | chr4_1:39871449-39871468 | Msa0547120:intron | 25.0% |
| ! | ATTCTTTCTTTGCACAAAAA+TGG | + | chr4_1:39871821-39871840 | Msa0547120:intron | 25.0% |
| ! | GATATAGATAATCTTATCCA+TGG | + | chr4_1:39871847-39871866 | Msa0547120:intron | 25.0% |
| ! | ACTGTGTTAAATTAAATTGC+AGG | + | chr4_1:39872342-39872361 | Msa0547120:intron | 25.0% |
| ! | TTTGTACGAATAAGAAAAGA+AGG | - | chr4_1:39872447-39872466 | None:intergenic | 25.0% |
| !!! | AATTTTCATTTTTGTTGGAC+AGG | + | chr4_1:39872697-39872716 | Msa0547120:three_prime_UTR | 25.0% |
| ATTGAAATGAAACGCTTGAA+AGG | - | chr4_1:39866376-39866395 | None:intergenic | 30.0% | |
| ! | CTTCATTACGTTAATTTTCC+CGG | + | chr4_1:39866407-39866426 | Msa0547120:CDS | 30.0% |
| ! | TTCATTACGTTAATTTTCCC+GGG | + | chr4_1:39866408-39866427 | Msa0547120:CDS | 30.0% |
| AAATACAGAAAAACTTTCCC+GGG | - | chr4_1:39866428-39866447 | None:intergenic | 30.0% | |
| ! | AACAGAAAAACAAAGGGTTT+TGG | + | chr4_1:39866462-39866481 | Msa0547120:CDS | 30.0% |
| ! | TCACGCTTTTCTTTTTGTTA+GGG | + | chr4_1:39866626-39866645 | Msa0547120:intron | 30.0% |
| TTTCTCATTCTCTTTGGATT+AGG | + | chr4_1:39866693-39866712 | Msa0547120:CDS | 30.0% | |
| TCTTCACTTGATAGAGAAAT+TGG | + | chr4_1:39866876-39866895 | Msa0547120:CDS | 30.0% | |
| ! | GGTTAAAAGTGATTTGTGTT+TGG | + | chr4_1:39867179-39867198 | Msa0547120:intron | 30.0% |
| !! | AAGCTATGATTTGTAGCTTT+TGG | - | chr4_1:39867264-39867283 | None:intergenic | 30.0% |
| ! | AGAATTGATTCTGACATGTT+TGG | - | chr4_1:39867342-39867361 | None:intergenic | 30.0% |
| TAATAGACTTAGTGCATGTT+TGG | - | chr4_1:39867404-39867423 | None:intergenic | 30.0% | |
| AATGACATGTTTGTTTGATG+CGG | + | chr4_1:39867506-39867525 | Msa0547120:intron | 30.0% | |
| ! | ATGATCTTGCATGATTGTTT+TGG | + | chr4_1:39867687-39867706 | Msa0547120:intron | 30.0% |
| !! | TTGTCTGATGTTTACTTTTC+TGG | + | chr4_1:39867913-39867932 | Msa0547120:intron | 30.0% |
| !! | TGTCTGATGTTTACTTTTCT+GGG | + | chr4_1:39867914-39867933 | Msa0547120:intron | 30.0% |
| ATTTGTACCCAACAAACTAA+TGG | + | chr4_1:39868066-39868085 | Msa0547120:intron | 30.0% | |
| ! | TTGTCGTTTCTGAAAATTCA+CGG | - | chr4_1:39868217-39868236 | None:intergenic | 30.0% |
| !! | TAATGGACTAATAGAAGGTT+TGG | - | chr4_1:39868295-39868314 | None:intergenic | 30.0% |
| CACATGTAAACAACAGAAAA+TGG | - | chr4_1:39868379-39868398 | None:intergenic | 30.0% | |
| CATGACATCTAAATTTCCAA+AGG | + | chr4_1:39868448-39868467 | Msa0547120:CDS | 30.0% | |
| ATTCGTAAGTACTAAAGACT+CGG | - | chr4_1:39868514-39868533 | None:intergenic | 30.0% | |
| ! | TACTTACGAATTTTCAATGG+AGG | + | chr4_1:39868523-39868542 | Msa0547120:CDS | 30.0% |
| ! | TTTTAGCATTACCACATGAT+GGG | + | chr4_1:39868971-39868990 | Msa0547120:intron | 30.0% |
| TCAATCACATGTACATCAAA+TGG | - | chr4_1:39869044-39869063 | None:intergenic | 30.0% | |
| TAAGGGAATGAATATTGTTG+AGG | + | chr4_1:39869100-39869119 | Msa0547120:CDS | 30.0% | |
| AAGGGAATGAATATTGTTGA+GGG | + | chr4_1:39869101-39869120 | Msa0547120:CDS | 30.0% | |
| !!! | CATATTTTTGAGGCGATAAT+CGG | - | chr4_1:39869378-39869397 | None:intergenic | 30.0% |
| CAAATGATAGCTATGGAATT+TGG | - | chr4_1:39869486-39869505 | None:intergenic | 30.0% | |
| !!! | AATTGGGGATTTTAATTTGC+AGG | - | chr4_1:39869556-39869575 | None:intergenic | 30.0% |
| !! | AAGTTTTTCGATTGCAATTG+GGG | - | chr4_1:39869571-39869590 | None:intergenic | 30.0% |
| GTACAGAAATATAAGGTTCT+TGG | + | chr4_1:39869727-39869746 | Msa0547120:CDS | 30.0% | |
| GTTTAAATAGTTGCATCTCA+TGG | + | chr4_1:39869786-39869805 | Msa0547120:intron | 30.0% | |
| ACATACCTTAAAAAGGATTG+AGG | - | chr4_1:39869861-39869880 | None:intergenic | 30.0% | |
| ! | ATTTTCAATAGTATCTAGGC+TGG | - | chr4_1:39870016-39870035 | None:intergenic | 30.0% |
| ATTGAAAATACAGGTTAGTG+TGG | + | chr4_1:39870027-39870046 | Msa0547120:intron | 30.0% | |
| TCTGAAAATATTACATGTCC+AGG | - | chr4_1:39870171-39870190 | None:intergenic | 30.0% | |
| TAAAATCACCATATTTGCCA+AGG | - | chr4_1:39870556-39870575 | None:intergenic | 30.0% | |
| ! | ATTGATTTCAGATGACTGTT+GGG | + | chr4_1:39870633-39870652 | Msa0547120:intron | 30.0% |
| CAAAAAGAATGAGTGAAGAA+AGG | - | chr4_1:39870842-39870861 | None:intergenic | 30.0% | |
| !! | CCTCTATTTCAAGTTACTTA+GGG | + | chr4_1:39870906-39870925 | Msa0547120:intron | 30.0% |
| AATTCGAAACCGAAGATTAA+GGG | - | chr4_1:39871168-39871187 | None:intergenic | 30.0% | |
| AAATTCGAAACCGAAGATTA+AGG | - | chr4_1:39871169-39871188 | None:intergenic | 30.0% | |
| !!! | ATCCTTTTTTACTGGCTTTT+CGG | + | chr4_1:39871400-39871419 | Msa0547120:intron | 30.0% |
| TGTTACTACTTGATAAGTGT+TGG | + | chr4_1:39871577-39871596 | Msa0547120:intron | 30.0% | |
| GTTACTACTTGATAAGTGTT+GGG | + | chr4_1:39871578-39871597 | Msa0547120:intron | 30.0% | |
| CATAAGTACAAGTTAAGAGA+AGG | - | chr4_1:39871615-39871634 | None:intergenic | 30.0% | |
| AAATAACAAATTGGTGCAGA+AGG | + | chr4_1:39871999-39872018 | Msa0547120:intron | 30.0% | |
| AGGTATAGTCAATATACTCA+TGG | + | chr4_1:39872019-39872038 | Msa0547120:intron | 30.0% | |
| GGTATAGTCAATATACTCAT+GGG | + | chr4_1:39872020-39872039 | Msa0547120:intron | 30.0% | |
| GTATAGTCAATATACTCATG+GGG | + | chr4_1:39872021-39872040 | Msa0547120:intron | 30.0% | |
| TATAGTCAATATACTCATGG+GGG | + | chr4_1:39872022-39872041 | Msa0547120:intron | 30.0% | |
| ! | GATCTAAATGTTACCGTTTT+TGG | - | chr4_1:39872249-39872268 | None:intergenic | 30.0% |
| AAATTAAATTGCAGGAGAGA+TGG | + | chr4_1:39872350-39872369 | Msa0547120:intron | 30.0% | |
| AATTAAATTGCAGGAGAGAT+GGG | + | chr4_1:39872351-39872370 | Msa0547120:intron | 30.0% | |
| GGTAAAAAGGTAAAGTAGTT+AGG | + | chr4_1:39872495-39872514 | Msa0547120:exon | 30.0% | |
| AGTAGTTAGGTCATAATTTG+TGG | + | chr4_1:39872508-39872527 | Msa0547120:three_prime_UTR | 30.0% | |
| CAACATCAATTTGCGTTATA+GGG | - | chr4_1:39872621-39872640 | None:intergenic | 30.0% | |
| ACAACATCAATTTGCGTTAT+AGG | - | chr4_1:39872622-39872641 | None:intergenic | 30.0% | |
| ACCTACCTGTATTGAAATTC+GGG | - | chr4_1:39866548-39866567 | None:intergenic | 35.0% | |
| GACCTACCTGTATTGAAATT+CGG | - | chr4_1:39866549-39866568 | None:intergenic | 35.0% | |
| ! | CTCACGCTTTTCTTTTTGTT+AGG | + | chr4_1:39866625-39866644 | Msa0547120:intron | 35.0% |
| GGATTTCGTGTTTGTAACTA+TGG | + | chr4_1:39866647-39866666 | Msa0547120:CDS | 35.0% | |
| !!! | GATAGTGGATACTTGTTTTG+CGG | + | chr4_1:39866806-39866825 | Msa0547120:intron | 35.0% |
| !!! | GATACTTGTTTTGCGGAAAA+TGG | + | chr4_1:39866813-39866832 | Msa0547120:CDS | 35.0% |
| ! | TGTTTTGCGGAAAATGGTTT+TGG | + | chr4_1:39866819-39866838 | Msa0547120:CDS | 35.0% |
| ! | TTCAGCTTAATCAGAGGTTT+TGG | + | chr4_1:39867074-39867093 | Msa0547120:intron | 35.0% |
| ! | TCAGCTTAATCAGAGGTTTT+GGG | + | chr4_1:39867075-39867094 | Msa0547120:intron | 35.0% |
| CGAGGACATTCCAAATAATT+CGG | - | chr4_1:39867572-39867591 | None:intergenic | 35.0% | |
| ATAAGTTGCGATTTGATCCA+AGG | + | chr4_1:39867600-39867619 | Msa0547120:CDS | 35.0% | |
| ATCGTAATGAGCAAGAATTC+AGG | - | chr4_1:39867631-39867650 | None:intergenic | 35.0% | |
| GTTGTTCGTTAGAGAAAAGT+TGG | + | chr4_1:39867709-39867728 | Msa0547120:intron | 35.0% | |
| !! | TTTGAATGAGTAGCTCTAAC+TGG | + | chr4_1:39867738-39867757 | Msa0547120:intron | 35.0% |
| CAGTCTATCAAAAGACGAAT+AGG | - | chr4_1:39868015-39868034 | None:intergenic | 35.0% | |
| ACTTACTCTTAGCATGTGTT+TGG | + | chr4_1:39868148-39868167 | Msa0547120:intron | 35.0% | |
| ! | GTACTAAAGACTCGGTTAAT+CGG | - | chr4_1:39868506-39868525 | None:intergenic | 35.0% |
| TAAGACATACCCTAGCAAAT+AGG | - | chr4_1:39868685-39868704 | None:intergenic | 35.0% | |
| ! | TGCTCTTTGTTTAGGTTACA+TGG | - | chr4_1:39868799-39868818 | None:intergenic | 35.0% |
| !! | GTTTTAGCATTACCACATGA+TGG | + | chr4_1:39868970-39868989 | Msa0547120:intron | 35.0% |
| AAATAGTATCACCCATCATG+TGG | - | chr4_1:39868985-39869004 | None:intergenic | 35.0% | |
| !! | ACATGATGGGTGATACTATT+TGG | + | chr4_1:39868984-39869003 | Msa0547120:intron | 35.0% |
| TTAATTTACAGAGGGAAGCT+AGG | + | chr4_1:39869072-39869091 | Msa0547120:intron | 35.0% | |
| AGAATACATCAATCATCCTG+TGG | + | chr4_1:39869166-39869185 | Msa0547120:CDS | 35.0% | |
| GCTTGGGATATTGTACATAA+TGG | + | chr4_1:39869188-39869207 | Msa0547120:CDS | 35.0% | |
| CATGTAATGCGTTTCTTTAG+TGG | + | chr4_1:39869235-39869254 | Msa0547120:intron | 35.0% | |
| CGATTATCGCCTCAAAAATA+TGG | + | chr4_1:39869376-39869395 | Msa0547120:intron | 35.0% | |
| ATATGTGCTACAAGTTGCAA+AGG | + | chr4_1:39869753-39869772 | Msa0547120:CDS | 35.0% | |
| CCTTAAAAAGGATTGAGGAA+AGG | - | chr4_1:39869856-39869875 | None:intergenic | 35.0% | |
| ! | CCTTTCCTCAATCCTTTTTA+AGG | + | chr4_1:39869853-39869872 | Msa0547120:intron | 35.0% |
| CTTGACGGTATGTTATATGT+TGG | + | chr4_1:39869904-39869923 | Msa0547120:CDS | 35.0% | |
| !! | GTTATATGTTGGTCTTACTG+AGG | + | chr4_1:39869915-39869934 | Msa0547120:CDS | 35.0% |
| TGCAACAATGTTTGCAAATG+TGG | + | chr4_1:39869951-39869970 | Msa0547120:CDS | 35.0% | |
| ACAATGTTTGCAAATGTGGT+TGG | + | chr4_1:39869955-39869974 | Msa0547120:CDS | 35.0% | |
| !! | ATGGGTGAACTTTGTTATTG+AGG | + | chr4_1:39870403-39870422 | Msa0547120:intron | 35.0% |
| !! | CATTGATTTCAGATGACTGT+TGG | + | chr4_1:39870632-39870651 | Msa0547120:intron | 35.0% |
| GCTCCGTAAATTAGAAATAC+AGG | - | chr4_1:39870681-39870700 | None:intergenic | 35.0% | |
| !! | GCCTCTATTTCAAGTTACTT+AGG | + | chr4_1:39870905-39870924 | Msa0547120:intron | 35.0% |
| CCCTAAGTAACTTGAAATAG+AGG | - | chr4_1:39870909-39870928 | None:intergenic | 35.0% | |
| ACTTAGGGTGTATTTGAATG+AGG | + | chr4_1:39870921-39870940 | Msa0547120:intron | 35.0% | |
| TATTTGAATGAGGAGGGTTT+AGG | + | chr4_1:39870931-39870950 | Msa0547120:intron | 35.0% | |
| TTTGGATTGAGGGTTTATGA+GGG | - | chr4_1:39871141-39871160 | None:intergenic | 35.0% | |
| ATCACTGAGGTATAACTGTT+AGG | + | chr4_1:39871790-39871809 | Msa0547120:intron | 35.0% | |
| !! | AGATCTCTACTTGTTGATTC+AGG | + | chr4_1:39872264-39872283 | Msa0547120:intron | 35.0% |
| !! | GATCTCTACTTGTTGATTCA+GGG | + | chr4_1:39872265-39872284 | Msa0547120:intron | 35.0% |
| ATGAATATGTCATCATCCTG+TGG | + | chr4_1:39872389-39872408 | Msa0547120:CDS | 35.0% | |
| GACAGAATTACGTTCAGATT+TGG | + | chr4_1:39872567-39872586 | Msa0547120:three_prime_UTR | 35.0% | |
| ATCAATTTGCGTTATAGGGA+CGG | - | chr4_1:39872617-39872636 | None:intergenic | 35.0% | |
| !!! | AACAAAGGGTTTTGGAATCG+CGG | + | chr4_1:39866470-39866489 | Msa0547120:CDS | 40.0% |
| CAACAGTGTTTGGATTCGAT+GGG | - | chr4_1:39866503-39866522 | None:intergenic | 40.0% | |
| ACAACAGTGTTTGGATTCGA+TGG | - | chr4_1:39866504-39866523 | None:intergenic | 40.0% | |
| GAGATCCCGAATTTCAATAC+AGG | + | chr4_1:39866540-39866559 | Msa0547120:CDS | 40.0% | |
| TCCCGAATTTCAATACAGGT+AGG | + | chr4_1:39866544-39866563 | Msa0547120:intron | 40.0% | |
| AAAACCAGAATGAAGAGAGC+GGG | - | chr4_1:39866571-39866590 | None:intergenic | 40.0% | |
| CAAAACCAGAATGAAGAGAG+CGG | - | chr4_1:39866572-39866591 | None:intergenic | 40.0% | |
| TTCGCGTTTCTCATTCTCTT+TGG | + | chr4_1:39866687-39866706 | Msa0547120:CDS | 40.0% | |
| TGAGAGAGTTGTGAAGAGTT+GGG | + | chr4_1:39866848-39866867 | Msa0547120:CDS | 40.0% | |
| TTCTTGCATGTTCCTAGAAC+CGG | + | chr4_1:39866936-39866955 | Msa0547120:CDS | 40.0% | |
| GTCTCTTTCAGCTTAATCAG+AGG | + | chr4_1:39867068-39867087 | Msa0547120:intron | 40.0% | |
| !!! | GTTTTGGGTTCAAACATCAG+TGG | + | chr4_1:39867090-39867109 | Msa0547120:intron | 40.0% |
| ATCAGTGGTAAGCATGTGTT+TGG | + | chr4_1:39867105-39867124 | Msa0547120:intron | 40.0% | |
| TACACCTCCAGAATCAATTC+TGG | + | chr4_1:39867361-39867380 | Msa0547120:intron | 40.0% | |
| ! | TGTTTGGTTCCACTTCTAGA+GGG | - | chr4_1:39867388-39867407 | None:intergenic | 40.0% |
| ! | ATGTTTGGTTCCACTTCTAG+AGG | - | chr4_1:39867389-39867408 | None:intergenic | 40.0% |
| !! | TTAAGTTTTGTGGCCCATTG+TGG | + | chr4_1:39867421-39867440 | Msa0547120:intron | 40.0% |
| ACATGTTTGTTTGATGCGGT+TGG | + | chr4_1:39867510-39867529 | Msa0547120:intron | 40.0% | |
| CGCAACTTATCATAAGATCG+AGG | - | chr4_1:39867590-39867609 | None:intergenic | 40.0% | |
| GGGTTTAGATTCTTGTACGT+CGG | + | chr4_1:39867934-39867953 | Msa0547120:intron | 40.0% | |
| GGTTTAGATTCTTGTACGTC+GGG | + | chr4_1:39867935-39867954 | Msa0547120:intron | 40.0% | |
| GTTTAGATTCTTGTACGTCG+GGG | + | chr4_1:39867936-39867955 | Msa0547120:intron | 40.0% | |
| TGTACCCAACAAACTAATGG+CGG | + | chr4_1:39868069-39868088 | Msa0547120:intron | 40.0% | |
| !! | TGATCCGCCATTAGTTTGTT+GGG | - | chr4_1:39868076-39868095 | None:intergenic | 40.0% |
| !! | ATGATCCGCCATTAGTTTGT+TGG | - | chr4_1:39868077-39868096 | None:intergenic | 40.0% |
| CATGTGTTTGGATACACGTT+TGG | + | chr4_1:39868160-39868179 | Msa0547120:intron | 40.0% | |
| ! | TCGTTTCTGAAAATTCACGG+TGG | - | chr4_1:39868214-39868233 | None:intergenic | 40.0% |
| GTCTGTGGTTACCATACTTA+GGG | + | chr4_1:39868478-39868497 | Msa0547120:CDS | 40.0% | |
| GTTAATCGGATCCCTAAGTA+TGG | - | chr4_1:39868492-39868511 | None:intergenic | 40.0% | |
| ! | CGAATTTTCAATGGAGGTTG+CGG | + | chr4_1:39868529-39868548 | Msa0547120:CDS | 40.0% |
| TGTGTTGCAGATGTCAAGTT+TGG | - | chr4_1:39868572-39868591 | None:intergenic | 40.0% | |
| GAGTAAGCACATTGGATATC+TGG | + | chr4_1:39868624-39868643 | Msa0547120:CDS | 40.0% | |
| CATGGAACAAGATACTTCCA+AGG | - | chr4_1:39868650-39868669 | None:intergenic | 40.0% | |
| !! | CTTGGAAGTATCTTGTTCCA+TGG | + | chr4_1:39868648-39868667 | Msa0547120:CDS | 40.0% |
| AATAGGTCTTCTCTCATCCA+TGG | - | chr4_1:39868668-39868687 | None:intergenic | 40.0% | |
| TGAGAGAAGACCTATTTGCT+AGG | + | chr4_1:39868672-39868691 | Msa0547120:CDS | 40.0% | |
| ! | GAGAGAAGACCTATTTGCTA+GGG | + | chr4_1:39868673-39868692 | Msa0547120:CDS | 40.0% |
| AGGGAAGCTAGGTATAGTAA+GGG | + | chr4_1:39869083-39869102 | Msa0547120:CDS | 40.0% | |
| ! | ATTACATGTGCTGAAGTACC+TGG | - | chr4_1:39869223-39869242 | None:intergenic | 40.0% |
| CAGAACAGTAAACAGATTGC+AGG | - | chr4_1:39869349-39869368 | None:intergenic | 40.0% | |
| !!! | ATTTTTGAGGCGATAATCGG+AGG | - | chr4_1:39869375-39869394 | None:intergenic | 40.0% |
| ! | GGAATTTGGCATTGAGACAT+AGG | - | chr4_1:39869472-39869491 | None:intergenic | 40.0% |
| !! | TGGTGGATTGTTCAATCATC+AGG | + | chr4_1:39869648-39869667 | Msa0547120:CDS | 40.0% |
| ! | TTGTTCAATCATCAGGTTGC+AGG | + | chr4_1:39869655-39869674 | Msa0547120:CDS | 40.0% |
| ATCTTGCAGAAGAGACTTGA+CGG | + | chr4_1:39869889-39869908 | Msa0547120:intron | 40.0% | |
| ATAGTATCTAGGCTGGTGTT+TGG | - | chr4_1:39870009-39870028 | None:intergenic | 40.0% | |
| AAGAAGGGCTGAAAAGTTGT+CGG | + | chr4_1:39870094-39870113 | Msa0547120:intron | 40.0% | |
| CTCATATTCTTGCATTCACC+TGG | + | chr4_1:39870150-39870169 | Msa0547120:intron | 40.0% | |
| AATGATCTTTGGGTGTGCTT+TGG | + | chr4_1:39870236-39870255 | Msa0547120:intron | 40.0% | |
| !! | ATCAGGTAAGAAGCATCTCT+TGG | + | chr4_1:39870380-39870399 | Msa0547120:intron | 40.0% |
| !! | GTAAGAAGCATCTCTTGGAT+GGG | + | chr4_1:39870385-39870404 | Msa0547120:intron | 40.0% |
| TGCAATACAGAATAGCACCT+CGG | + | chr4_1:39870462-39870481 | Msa0547120:intron | 40.0% | |
| GAGGCTACTTCAACTGAAAA+TGG | + | chr4_1:39870499-39870518 | Msa0547120:CDS | 40.0% | |
| ACCATATTTGCCAAGGAAAC+AGG | - | chr4_1:39870549-39870568 | None:intergenic | 40.0% | |
| GATTCCGGTGAACTTTACAA+AGG | + | chr4_1:39870736-39870755 | Msa0547120:CDS | 40.0% | |
| ACCTCCTTTGTAAAGTTCAC+CGG | - | chr4_1:39870743-39870762 | None:intergenic | 40.0% | |
| TTCACTATCATTATGTGGCG+TGG | + | chr4_1:39870808-39870827 | Msa0547120:intron | 40.0% | |
| TAGGGTGTATTTGAATGAGG+AGG | + | chr4_1:39870924-39870943 | Msa0547120:intron | 40.0% | |
| AGGGTGTATTTGAATGAGGA+GGG | + | chr4_1:39870925-39870944 | Msa0547120:intron | 40.0% | |
| TTGGATTGAGGGTTTATGAG+GGG | - | chr4_1:39871140-39871159 | None:intergenic | 40.0% | |
| GTTTGGATTGAGGGTTTATG+AGG | - | chr4_1:39871142-39871161 | None:intergenic | 40.0% | |
| ! | TAAGGGTGTGTTTGGATTGA+GGG | - | chr4_1:39871151-39871170 | None:intergenic | 40.0% |
| ! | TTAAGGGTGTGTTTGGATTG+AGG | - | chr4_1:39871152-39871171 | None:intergenic | 40.0% |
| CCAAACACACCCTTAATCTT+CGG | + | chr4_1:39871156-39871175 | Msa0547120:intron | 40.0% | |
| CACCGAAAAGCCAGTAAAAA+AGG | - | chr4_1:39871405-39871424 | None:intergenic | 40.0% | |
| !!! | CTTTTTTACTGGCTTTTCGG+TGG | + | chr4_1:39871403-39871422 | Msa0547120:intron | 40.0% |
| GTCTCTTAACGATCTTGACT+TGG | + | chr4_1:39871711-39871730 | Msa0547120:CDS | 40.0% | |
| TATCCATGGCTGCAAAAGAT+TGG | + | chr4_1:39871861-39871880 | Msa0547120:intron | 40.0% | |
| GAGATGCTACTCTGTAAACT+TGG | + | chr4_1:39872215-39872234 | Msa0547120:intron | 40.0% | |
| CTTGGCTACACAACCAAAAA+CGG | + | chr4_1:39872233-39872252 | Msa0547120:intron | 40.0% | |
| ATATGTCATCATCCTGTGGA+AGG | + | chr4_1:39872393-39872412 | Msa0547120:CDS | 40.0% | |
| CTAATGTAAGAACCTTCCAC+AGG | - | chr4_1:39872408-39872427 | None:intergenic | 40.0% | |
| GAAGAACGTCGAAGGTAAAA+AGG | + | chr4_1:39872482-39872501 | Msa0547120:CDS | 40.0% | |
| ! | TTCGATGTTTTGTCCACTGA+TGG | + | chr4_1:39872641-39872660 | Msa0547120:three_prime_UTR | 40.0% |
| ! | TCGATGTTTTGTCCACTGAT+GGG | + | chr4_1:39872642-39872661 | Msa0547120:three_prime_UTR | 40.0% |
| !! | ATGCTGCTGATTCACTCTAA+TGG | - | chr4_1:39872740-39872759 | None:intergenic | 40.0% |
| ! | AGAGTGAATCAGCAGCATTT+TGG | + | chr4_1:39872742-39872761 | Msa0547120:three_prime_UTR | 40.0% |
| ACTTGTGTGGTCACAAGATT+TGG | - | chr4_1:39872879-39872898 | None:intergenic | 40.0% | |
| GTGAGAGAGTTGTGAAGAGT+TGG | + | chr4_1:39866847-39866866 | Msa0547120:CDS | 45.0% | |
| ATGAAAATAAGCGCGTCCTC+CGG | - | chr4_1:39866958-39866977 | None:intergenic | 45.0% | |
| !! | GAGGACGCGCTTATTTTCAT+TGG | + | chr4_1:39866958-39866977 | Msa0547120:CDS | 45.0% |
| CACGAAACATCCCATCCAAA+CGG | - | chr4_1:39867049-39867068 | None:intergenic | 45.0% | |
| !! | CATGTGTTTGGTTCTGCGTT+GGG | + | chr4_1:39867117-39867136 | Msa0547120:intron | 45.0% |
| !! | ATGTGTTTGGTTCTGCGTTG+GGG | + | chr4_1:39867118-39867137 | Msa0547120:intron | 45.0% |
| ! | AGAGGGACCAGAATTGATTC+TGG | - | chr4_1:39867371-39867390 | None:intergenic | 45.0% |
| ! | AATTCTGGTCCCTCTAGAAG+TGG | + | chr4_1:39867376-39867395 | Msa0547120:intron | 45.0% |
| GAGCCAGATAAGACCACAAT+GGG | - | chr4_1:39867437-39867456 | None:intergenic | 45.0% | |
| CAAGAATTCAGGCATCACCT+TGG | - | chr4_1:39867620-39867639 | None:intergenic | 45.0% | |
| CATAGGGACGCAAAAAACAG+TGG | - | chr4_1:39868186-39868205 | None:intergenic | 45.0% | |
| ATTCACGGTGGAACAGCATA+GGG | - | chr4_1:39868202-39868221 | None:intergenic | 45.0% | |
| AATTCACGGTGGAACAGCAT+AGG | - | chr4_1:39868203-39868222 | None:intergenic | 45.0% | |
| CGTCTGTGGTTACCATACTT+AGG | + | chr4_1:39868477-39868496 | Msa0547120:CDS | 45.0% | |
| CTTGACATCTGCAACACAGA+TGG | + | chr4_1:39868574-39868593 | Msa0547120:CDS | 45.0% | |
| GGCTAAAGGAGTAAGCACAT+TGG | + | chr4_1:39868616-39868635 | Msa0547120:CDS | 45.0% | |
| ! | GGGCTTCATGCTCTTTGTTT+AGG | - | chr4_1:39868807-39868826 | None:intergenic | 45.0% |
| GAGGGAAGCTAGGTATAGTA+AGG | + | chr4_1:39869082-39869101 | Msa0547120:intron | 45.0% | |
| ACATCAATCATCCTGTGGCT+TGG | + | chr4_1:39869171-39869190 | Msa0547120:CDS | 45.0% | |
| CATCAATCATCCTGTGGCTT+GGG | + | chr4_1:39869172-39869191 | Msa0547120:CDS | 45.0% | |
| TGTACAATATCCCAAGCCAC+AGG | - | chr4_1:39869185-39869204 | None:intergenic | 45.0% | |
| ! | ACATAATGGAGCCACATTCC+AGG | + | chr4_1:39869202-39869221 | Msa0547120:CDS | 45.0% |
| ! | GCGTTTCTTTAGTGGTGTTG+AGG | + | chr4_1:39869243-39869262 | Msa0547120:intron | 45.0% |
| ! | TGGCATTGAGACATAGGTCA+AGG | - | chr4_1:39869466-39869485 | None:intergenic | 45.0% |
| ! | TGCAAATGTGGTTGGTTCTC+AGG | + | chr4_1:39869963-39869982 | Msa0547120:CDS | 45.0% |
| AGAAGGGCTGAAAAGTTGTC+GGG | + | chr4_1:39870095-39870114 | Msa0547120:intron | 45.0% | |
| GTCGGGAATGGTACAGAATT+TGG | + | chr4_1:39870112-39870131 | Msa0547120:intron | 45.0% | |
| TCCTGATAGCAGTGAACATC+AGG | + | chr4_1:39870363-39870382 | Msa0547120:CDS | 45.0% | |
| ACCTGATGTTCACTGCTATC+AGG | - | chr4_1:39870367-39870386 | None:intergenic | 45.0% | |
| !! | GGTAAGAAGCATCTCTTGGA+TGG | + | chr4_1:39870384-39870403 | Msa0547120:intron | 45.0% |
| CAACTGTAAGCCTGTTTCCT+TGG | + | chr4_1:39870536-39870555 | Msa0547120:intron | 45.0% | |
| GCCTGTTTCCTTGGCAAATA+TGG | + | chr4_1:39870545-39870564 | Msa0547120:intron | 45.0% | |
| GATGACTGTTGGGAAACTCA+TGG | + | chr4_1:39870643-39870662 | Msa0547120:intron | 45.0% | |
| AATTTACGGAGCTCCCAATC+AGG | + | chr4_1:39870689-39870708 | Msa0547120:CDS | 45.0% | |
| TCTTCAAAGAGGAGATGCGT+CGG | - | chr4_1:39870715-39870734 | None:intergenic | 45.0% | |
| ! | CTCCTCTTTGAAGAGGATTC+CGG | + | chr4_1:39870721-39870740 | Msa0547120:CDS | 45.0% |
| TCCGGTGAACTTTACAAAGG+AGG | + | chr4_1:39870739-39870758 | Msa0547120:CDS | 45.0% | |
| TTGAATGAGGAGGGTTTAGG+AGG | + | chr4_1:39870934-39870953 | Msa0547120:intron | 45.0% | |
| TGAATGAGGAGGGTTTAGGA+GGG | + | chr4_1:39870935-39870954 | Msa0547120:intron | 45.0% | |
| ATTGAGGGTTTATGAGGGGA+AGG | - | chr4_1:39871136-39871155 | None:intergenic | 45.0% | |
| ! | CCGAAGATTAAGGGTGTGTT+TGG | - | chr4_1:39871159-39871178 | None:intergenic | 45.0% |
| ! | CTACCAATCTTTTGCAGCCA+TGG | - | chr4_1:39871867-39871886 | None:intergenic | 45.0% |
| TGCAAGAAGAAGAACGTCGA+AGG | + | chr4_1:39872474-39872493 | Msa0547120:CDS | 45.0% | |
| !! | TAGGGACGGTGATGGAAATA+TGG | - | chr4_1:39872603-39872622 | None:intergenic | 45.0% |
| !! | TGTTTTGTCCACTGATGGGT+AGG | + | chr4_1:39872646-39872665 | Msa0547120:three_prime_UTR | 45.0% |
| !! | GTTTTGTCCACTGATGGGTA+GGG | + | chr4_1:39872647-39872666 | Msa0547120:three_prime_UTR | 45.0% |
| TTGCATGTTCCTAGAACCGG+AGG | + | chr4_1:39866939-39866958 | Msa0547120:CDS | 50.0% | |
| ATCCCATCCAAACGGTCTTG+CGG | - | chr4_1:39867041-39867060 | None:intergenic | 50.0% | |
| !! | GCATGTGTTTGGTTCTGCGT+TGG | + | chr4_1:39867116-39867135 | Msa0547120:intron | 50.0% |
| ! | GGGACCAGAATTGATTCTGG+AGG | - | chr4_1:39867368-39867387 | None:intergenic | 50.0% |
| !! | TGGCCCATTGTGGTCTTATC+TGG | + | chr4_1:39867431-39867450 | Msa0547120:intron | 50.0% |
| CGAGCCAGATAAGACCACAA+TGG | - | chr4_1:39867438-39867457 | None:intergenic | 50.0% | |
| !! | TTGTGGTCTTATCTGGCTCG+AGG | + | chr4_1:39867438-39867457 | Msa0547120:intron | 50.0% |
| !! | TGTGGTCTTATCTGGCTCGA+GGG | + | chr4_1:39867439-39867458 | Msa0547120:intron | 50.0% |
| ! | AGCTCTAACTGGTACAGACG+TGG | + | chr4_1:39867749-39867768 | Msa0547120:intron | 50.0% |
| GCTCTAACTGGTACAGACGT+GGG | + | chr4_1:39867750-39867769 | Msa0547120:intron | 50.0% | |
| TCCAAAGGAGAGAACGTCTG+TGG | + | chr4_1:39868463-39868482 | Msa0547120:CDS | 50.0% | |
| ACCACAGACGTTCTCTCCTT+TGG | - | chr4_1:39868467-39868486 | None:intergenic | 50.0% | |
| ! | GGAGGTTGCGGCTAGATTTT+TGG | + | chr4_1:39868541-39868560 | Msa0547120:CDS | 50.0% |
| GCACATTGGATATCTGGCCT+TGG | + | chr4_1:39868630-39868649 | Msa0547120:CDS | 50.0% | |
| ! | GTGCTGAAGTACCTGGAATG+TGG | - | chr4_1:39869216-39869235 | None:intergenic | 50.0% |
| GATTGAGGAAAGGAGCAGCT+GGG | - | chr4_1:39869846-39869865 | None:intergenic | 50.0% | |
| GGCTGAAAAGTTGTCGGGAA+TGG | + | chr4_1:39870100-39870119 | Msa0547120:intron | 50.0% | |
| TACAGAATAGCACCTCGGAC+AGG | + | chr4_1:39870467-39870486 | Msa0547120:intron | 50.0% | |
| ACAGAATAGCACCTCGGACA+GGG | + | chr4_1:39870468-39870487 | Msa0547120:intron | 50.0% | |
| ! | GACGCATCTCCTCTTTGAAG+AGG | + | chr4_1:39870714-39870733 | Msa0547120:CDS | 50.0% |
| CACCGGAATCCTCTTCAAAG+AGG | - | chr4_1:39870726-39870745 | None:intergenic | 50.0% | |
| GGTTTATGAGGGGAAGGAAG+GGG | - | chr4_1:39871130-39871149 | None:intergenic | 50.0% | |
| GGGTTTATGAGGGGAAGGAA+GGG | - | chr4_1:39871131-39871150 | None:intergenic | 50.0% | |
| AGGGTTTATGAGGGGAAGGA+AGG | - | chr4_1:39871132-39871151 | None:intergenic | 50.0% | |
| ! | ACGACTTCAAGTTCCCGAAG+AGG | + | chr4_1:39871672-39871691 | Msa0547120:CDS | 50.0% |
| TAGCTGCTGGAGAACCTCTT+CGG | - | chr4_1:39871689-39871708 | None:intergenic | 50.0% | |
| AAGAGGTTCTCCAGCAGCTA+CGG | + | chr4_1:39871689-39871708 | Msa0547120:CDS | 50.0% | |
| AACCTCATCGCTGATCACTG+AGG | + | chr4_1:39871777-39871796 | Msa0547120:CDS | 50.0% | |
| TACCTCAGTGATCAGCGATG+AGG | - | chr4_1:39871782-39871801 | None:intergenic | 50.0% | |
| TTGCGTTATAGGGACGGTGA+TGG | - | chr4_1:39872611-39872630 | None:intergenic | 50.0% | |
| CACAAAACCCTACCCATCAG+TGG | - | chr4_1:39872657-39872676 | None:intergenic | 50.0% | |
| !! | CTGATGGGTAGGGTTTTGTG+AGG | + | chr4_1:39872657-39872676 | Msa0547120:three_prime_UTR | 50.0% |
| AGGTCCCGCTCTCTTCATTC+TGG | + | chr4_1:39866564-39866583 | Msa0547120:intron | 55.0% | |
| GGCTTTACGCTTGCGCTCTA+AGG | + | chr4_1:39868595-39868614 | Msa0547120:CDS | 55.0% | |
| !! | CGCTTGCGCTCTAAGGCTAA+AGG | + | chr4_1:39868602-39868621 | Msa0547120:CDS | 55.0% |
| AGGAAAGGAGCAGCTGGGAA+GGG | - | chr4_1:39869841-39869860 | None:intergenic | 55.0% | |
| GGATTGAGGAAAGGAGCAGC+TGG | - | chr4_1:39869847-39869866 | None:intergenic | 55.0% | |
| CAGAATAGCACCTCGGACAG+GGG | + | chr4_1:39870469-39870488 | Msa0547120:intron | 55.0% | |
| ATGAGGAGGGTTTAGGAGGG+AGG | + | chr4_1:39870938-39870957 | Msa0547120:intron | 55.0% | |
| TGAGGAGGGTTTAGGAGGGA+GGG | + | chr4_1:39870939-39870958 | Msa0547120:intron | 55.0% | |
| TTATGAGGGGAAGGAAGGGG+AGG | - | chr4_1:39871127-39871146 | None:intergenic | 55.0% | |
| AGCTGCTGGAGAACCTCTTC+GGG | - | chr4_1:39871688-39871707 | None:intergenic | 55.0% | |
| CGTTAAGAGACCGTAGCTGC+TGG | - | chr4_1:39871702-39871721 | None:intergenic | 55.0% | |
| TAAGCGCGTCCTCCGGTTCT+AGG | - | chr4_1:39866951-39866970 | None:intergenic | 60.0% | |
| ATCCAAACGGTCTTGCGGCC+CGG | - | chr4_1:39867036-39867055 | None:intergenic | 60.0% | |
| GGCCGCAAGACCGTTTGGAT+GGG | + | chr4_1:39867036-39867055 | Msa0547120:intron | 60.0% | |
| CTGGTACAGACGTGGGCTTG+TGG | + | chr4_1:39867757-39867776 | Msa0547120:intron | 60.0% | |
| AAAGGAGCAGCTGGGAAGGG+GGG | - | chr4_1:39869838-39869857 | None:intergenic | 60.0% | |
| GAAAGGAGCAGCTGGGAAGG+GGG | - | chr4_1:39869839-39869858 | None:intergenic | 60.0% | |
| GGAAAGGAGCAGCTGGGAAG+GGG | - | chr4_1:39869840-39869859 | None:intergenic | 60.0% | |
| GAGGAAAGGAGCAGCTGGGA+AGG | - | chr4_1:39869842-39869861 | None:intergenic | 60.0% | |
| ! | GGAGATGCGTCGGCCTGATT+GGG | - | chr4_1:39870705-39870724 | None:intergenic | 60.0% |
| ! | AGGAGATGCGTCGGCCTGAT+TGG | - | chr4_1:39870706-39870725 | None:intergenic | 60.0% |
| AACCGGGCCGCAAGACCGTT+TGG | + | chr4_1:39867031-39867050 | Msa0547120:intron | 65.0% | |
| GGGCCGCAAGACCGTTTGGA+TGG | + | chr4_1:39867035-39867054 | Msa0547120:intron | 65.0% | |
| AAGGAGCAGCTGGGAAGGGG+GGG | - | chr4_1:39869837-39869856 | None:intergenic | 65.0% | |
| AGGAGCAGCTGGGAAGGGGG+GGG | - | chr4_1:39869836-39869855 | None:intergenic | 70.0% | |
| CTCGCTTGCTCCCCTGTCCG+AGG | - | chr4_1:39870482-39870501 | None:intergenic | 70.0% | |
| CTCGGACAGGGGAGCAAGCG+AGG | + | chr4_1:39870480-39870499 | Msa0547120:CDS | 70.0% | |
| AGCAGCTGGGAAGGGGGGGG+GGG | - | chr4_1:39869833-39869852 | None:intergenic | 75.0% | |
| GAGCAGCTGGGAAGGGGGGG+GGG | - | chr4_1:39869834-39869853 | None:intergenic | 75.0% | |
| GGAGCAGCTGGGAAGGGGGG+GGG | - | chr4_1:39869835-39869854 | None:intergenic | 75.0% | |
| ! | AGCTGGGAAGGGGGGGGGGG+GGG | - | chr4_1:39869830-39869849 | None:intergenic | 80.0% |
| ! | CAGCTGGGAAGGGGGGGGGG+GGG | - | chr4_1:39869831-39869850 | None:intergenic | 80.0% |
| ! | GCAGCTGGGAAGGGGGGGGG+GGG | - | chr4_1:39869832-39869851 | None:intergenic | 80.0% |
| ! | TGGGAAGGGGGGGGGGGGGG+GGG | - | chr4_1:39869827-39869846 | None:intergenic | 85.0% |
| ! | CTGGGAAGGGGGGGGGGGGG+GGG | - | chr4_1:39869828-39869847 | None:intergenic | 85.0% |
| ! | GCTGGGAAGGGGGGGGGGGG+GGG | - | chr4_1:39869829-39869848 | None:intergenic | 85.0% |
| ! | AAGGGGGGGGGGGGGGGGGG+GGG | - | chr4_1:39869823-39869842 | None:intergenic | 90.0% |
| ! | GAAGGGGGGGGGGGGGGGGG+GGG | - | chr4_1:39869824-39869843 | None:intergenic | 90.0% |
| ! | GGAAGGGGGGGGGGGGGGGG+GGG | - | chr4_1:39869825-39869844 | None:intergenic | 90.0% |
| ! | GGGAAGGGGGGGGGGGGGGG+GGG | - | chr4_1:39869826-39869845 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 39866323 | 39872905 | 39866323 | ID=Msa0547120;Name=Msa0547120 |
| chr4_1 | mRNA | 39866323 | 39872905 | 39866323 | ID=Msa0547120-mRNA-1;Parent=Msa0547120;Name=Msa0547120-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.91|0.84|1|0.91|0.84|13|398|584 |
| chr4_1 | exon | 39866323 | 39866561 | 39866323 | ID=Msa0547120-mRNA-1:exon:10130;Parent=Msa0547120-mRNA-1 |
| chr4_1 | exon | 39866647 | 39866714 | 39866647 | ID=Msa0547120-mRNA-1:exon:10131;Parent=Msa0547120-mRNA-1 |
| chr4_1 | exon | 39866811 | 39866979 | 39866811 | ID=Msa0547120-mRNA-1:exon:10132;Parent=Msa0547120-mRNA-1 |
| chr4_1 | exon | 39867550 | 39867621 | 39867550 | ID=Msa0547120-mRNA-1:exon:10133;Parent=Msa0547120-mRNA-1 |
| chr4_1 | exon | 39868406 | 39868694 | 39868406 | ID=Msa0547120-mRNA-1:exon:10134;Parent=Msa0547120-mRNA-1 |
| chr4_1 | exon | 39869083 | 39869223 | 39869083 | ID=Msa0547120-mRNA-1:exon:10135;Parent=Msa0547120-mRNA-1 |
| chr4_1 | exon | 39869646 | 39869774 | 39869646 | ID=Msa0547120-mRNA-1:exon:10136;Parent=Msa0547120-mRNA-1 |
| chr4_1 | exon | 39869898 | 39870039 | 39869898 | ID=Msa0547120-mRNA-1:exon:10137;Parent=Msa0547120-mRNA-1 |
| chr4_1 | exon | 39870338 | 39870384 | 39870338 | ID=Msa0547120-mRNA-1:exon:10138;Parent=Msa0547120-mRNA-1 |
| chr4_1 | exon | 39870472 | 39870540 | 39870472 | ID=Msa0547120-mRNA-1:exon:10139;Parent=Msa0547120-mRNA-1 |
| chr4_1 | exon | 39870644 | 39870760 | 39870644 | ID=Msa0547120-mRNA-1:exon:10140;Parent=Msa0547120-mRNA-1 |
| chr4_1 | exon | 39871670 | 39871798 | 39871670 | ID=Msa0547120-mRNA-1:exon:10141;Parent=Msa0547120-mRNA-1 |
| chr4_1 | exon | 39872364 | 39872905 | 39872364 | ID=Msa0547120-mRNA-1:exon:10142;Parent=Msa0547120-mRNA-1 |
| chr4_1 | CDS | 39866323 | 39866561 | 39866323 | ID=Msa0547120-mRNA-1:cds;Parent=Msa0547120-mRNA-1 |
| chr4_1 | CDS | 39866647 | 39866714 | 39866647 | ID=Msa0547120-mRNA-1:cds;Parent=Msa0547120-mRNA-1 |
| chr4_1 | CDS | 39866811 | 39866979 | 39866811 | ID=Msa0547120-mRNA-1:cds;Parent=Msa0547120-mRNA-1 |
| chr4_1 | CDS | 39867550 | 39867621 | 39867550 | ID=Msa0547120-mRNA-1:cds;Parent=Msa0547120-mRNA-1 |
| chr4_1 | CDS | 39868406 | 39868694 | 39868406 | ID=Msa0547120-mRNA-1:cds;Parent=Msa0547120-mRNA-1 |
| chr4_1 | CDS | 39869083 | 39869223 | 39869083 | ID=Msa0547120-mRNA-1:cds;Parent=Msa0547120-mRNA-1 |
| chr4_1 | CDS | 39869646 | 39869774 | 39869646 | ID=Msa0547120-mRNA-1:cds;Parent=Msa0547120-mRNA-1 |
| chr4_1 | CDS | 39869898 | 39870039 | 39869898 | ID=Msa0547120-mRNA-1:cds;Parent=Msa0547120-mRNA-1 |
| chr4_1 | CDS | 39870338 | 39870384 | 39870338 | ID=Msa0547120-mRNA-1:cds;Parent=Msa0547120-mRNA-1 |
| chr4_1 | CDS | 39870472 | 39870540 | 39870472 | ID=Msa0547120-mRNA-1:cds;Parent=Msa0547120-mRNA-1 |
| chr4_1 | CDS | 39870644 | 39870760 | 39870644 | ID=Msa0547120-mRNA-1:cds;Parent=Msa0547120-mRNA-1 |
| chr4_1 | CDS | 39871670 | 39871798 | 39871670 | ID=Msa0547120-mRNA-1:cds;Parent=Msa0547120-mRNA-1 |
| chr4_1 | CDS | 39872364 | 39872507 | 39872364 | ID=Msa0547120-mRNA-1:cds;Parent=Msa0547120-mRNA-1 |
| chr4_1 | three_prime_UTR | 39872508 | 39872905 | 39872508 | ID=Msa0547120-mRNA-1:three_prime_utr;Parent=Msa0547120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
