AlfalfaGEDB | Msa0642960

M. sativa cultivar zhongmu-4 / Msa0642960

KEGG: K22218
GO: GO:0002376 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006029 GO:0006521 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008146 GO:0008150 GO:0008152 GO:0008476 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010364 GO:0010366 GO:0010468 GO:0010565 GO:0010817 GO:0012505 GO:0015012 GO:0015015 GO:0016740 GO:0016782 GO:0017095 GO:0019222 GO:0019538 GO:0019827 GO:0022622 GO:0030166 GO:0030201 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031335 GO:0031336 GO:0031410 GO:0031982 GO:0031984 GO:0032350 GO:0032351 GO:0032353 GO:0032501 GO:0032502 GO:0033238 GO:0033239 GO:0034483 GO:0034645 GO:0040008 GO:0042221 GO:0042592 GO:0042762 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045763 GO:0046885 GO:0048364 GO:0048507 GO:0048509 GO:0048519 GO:0048523 GO:0048638 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051172 GO:0051175 GO:0051239 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0060255 GO:0062012 GO:0062014 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0097708 GO:0098727 GO:0098771 GO:0098791 GO:0099402 GO:0140096 GO:1900908 GO:1900909 GO:1900911 GO:1900912 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1905392 GO:2000026 GO:2000280
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0642960	XP_013455999.1	94.378	498	20	1	1	498	1	490	0.0	955

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0642960	sp\|Q3EDG5\|TPST_ARATH	56.250	512	194	9	1	497	3	499	0.0	548

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0318680	Msa0642960	0.808939	2.420321e-50	-8.615850e-47
Msa0547120	Msa0642960	0.945353	3.576278e-104	-8.615850e-47
Msa0642960	Msa0741440	0.818371	2.029653e-52	-8.615850e-47
Msa0642960	Msa0822500	0.820330	7.262947e-53	-8.615850e-47
Msa0642960	Msa1231840	0.802389	5.742879e-49	-8.615850e-47
Msa0642960	Msa1346840	0.830642	2.617718e-55	-8.615850e-47
Msa0642960	Msa1358500	0.811107	8.261332e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0642960	MtrunA17_Chr4g0028941	95.134	411	12	1	1	411	1	403	0.0	823

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0642960	AT1G08030.2	56.250	512	194	9	1	497	3	499	0.0	548
Msa0642960	AT1G08030.1	56.250	512	194	9	1	497	3	499	0.0	548

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Find 131 sgRNAs with CRISPR-Local

Find 409 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTGTATTTCTAATTTA+CGG	0.254363	4_3:+45297121	Msa0642960:CDS
AAATGAAAATTAAAGTAAAA+AGG	0.309257	4_3:-45299131	None:intergenic
AAATTAAATTGCAGGAGAGA+TGG	0.487278	4_3:+45298796	Msa0642960:intron
AACAAAGGGTTCTGGAATCG+CGG	0.596714	4_3:+45292938	Msa0642960:five_prime_UTR
AACCTCATCGCTGATCACTG+AGG	0.754324	4_3:+45298222	Msa0642960:CDS
AAGAGGTTCTCCAGCAGCTA+CGG	0.550011	4_3:+45298134	Msa0642960:CDS
AAGGGAATGAATATTGTTGA+GGG	0.497432	4_3:+45295552	Msa0642960:CDS
AATAGGTCTTCTCTCATCCA+TGG	0.546951	4_3:-45295116	None:intergenic
AATTAAATTGCAGGAGAGAT+GGG	0.449923	4_3:+45298797	Msa0642960:intron
AATTTACGGAGCTCCCAATC+AGG	0.480734	4_3:+45297135	Msa0642960:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGTTGAAAATGGTTAAGAG+TGG	-	chr4_3:45292789-45292808	None:intergenic	30.0%
ATTGAAATGAAACGCTTGAA+AGG	-	chr4_3:45292838-45292857	None:intergenic	30.0%
GTAAATTTGTACAACAGTGT+TGG	-	chr4_3:45292982-45293001	None:intergenic	30.0%
TCTTCACTTGATAGAGAAAT+TGG	+	chr4_3:45293328-45293347	Msa0642960:CDS	30.0%
TAATAGACTTAGTGCATGTT+TGG	-	chr4_3:45293856-45293875	None:intergenic	30.0%
AATGACATGTTTGTTTGATG+CGG	+	chr4_3:45293958-45293977	Msa0642960:intron	30.0%
ATTTGTACCCAACAAACTAA+TGG	+	chr4_3:45294517-45294536	Msa0642960:intron	30.0%
CACATGTAAACAACAGAAAA+TGG	-	chr4_3:45294830-45294849	None:intergenic	30.0%
CATGACATCTAAATTTCCAA+AGG	+	chr4_3:45294899-45294918	Msa0642960:CDS	30.0%
ATTCGTAAGTACTAAAGACT+CGG	-	chr4_3:45294965-45294984	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	45292756	45299351	45292756	ID=Msa0642960;Name=Msa0642960
chr4_3	mRNA	45292756	45299351	45292756	ID=Msa0642960-mRNA-1;Parent=Msa0642960;Name=Msa0642960-mRNA-1;_AED=0.08;_eAED=0.08;_QI=270\|0.92\|0.92\|1\|0.76\|0.78\|14\|398\|498
chr4_3	exon	45292756	45292812	45292756	ID=Msa0642960-mRNA-1:exon:10441;Parent=Msa0642960-mRNA-1
chr4_3	exon	45292836	45293029	45292836	ID=Msa0642960-mRNA-1:exon:10442;Parent=Msa0642960-mRNA-1
chr4_3	exon	45293114	45293181	45293114	ID=Msa0642960-mRNA-1:exon:10443;Parent=Msa0642960-mRNA-1
chr4_3	exon	45293263	45293431	45293263	ID=Msa0642960-mRNA-1:exon:10444;Parent=Msa0642960-mRNA-1
chr4_3	exon	45294001	45294072	45294001	ID=Msa0642960-mRNA-1:exon:10445;Parent=Msa0642960-mRNA-1
chr4_3	exon	45294857	45295145	45294857	ID=Msa0642960-mRNA-1:exon:10446;Parent=Msa0642960-mRNA-1
chr4_3	exon	45295534	45295674	45295534	ID=Msa0642960-mRNA-1:exon:10447;Parent=Msa0642960-mRNA-1
chr4_3	exon	45296096	45296224	45296096	ID=Msa0642960-mRNA-1:exon:10448;Parent=Msa0642960-mRNA-1
chr4_3	exon	45296344	45296485	45296344	ID=Msa0642960-mRNA-1:exon:10449;Parent=Msa0642960-mRNA-1
chr4_3	exon	45296784	45296830	45296784	ID=Msa0642960-mRNA-1:exon:10450;Parent=Msa0642960-mRNA-1
chr4_3	exon	45296918	45296986	45296918	ID=Msa0642960-mRNA-1:exon:10451;Parent=Msa0642960-mRNA-1
chr4_3	exon	45297090	45297206	45297090	ID=Msa0642960-mRNA-1:exon:10452;Parent=Msa0642960-mRNA-1
chr4_3	exon	45298115	45298243	45298115	ID=Msa0642960-mRNA-1:exon:10453;Parent=Msa0642960-mRNA-1
chr4_3	exon	45298810	45299351	45298810	ID=Msa0642960-mRNA-1:exon:10454;Parent=Msa0642960-mRNA-1
chr4_3	five_prime_UTR	45292756	45292812	45292756	ID=Msa0642960-mRNA-1:five_prime_utr;Parent=Msa0642960-mRNA-1
chr4_3	five_prime_UTR	45292836	45293029	45292836	ID=Msa0642960-mRNA-1:five_prime_utr;Parent=Msa0642960-mRNA-1
chr4_3	five_prime_UTR	45293114	45293132	45293114	ID=Msa0642960-mRNA-1:five_prime_utr;Parent=Msa0642960-mRNA-1
chr4_3	CDS	45293133	45293181	45293133	ID=Msa0642960-mRNA-1:cds;Parent=Msa0642960-mRNA-1
chr4_3	CDS	45293263	45293431	45293263	ID=Msa0642960-mRNA-1:cds;Parent=Msa0642960-mRNA-1
chr4_3	CDS	45294001	45294072	45294001	ID=Msa0642960-mRNA-1:cds;Parent=Msa0642960-mRNA-1
chr4_3	CDS	45294857	45295145	45294857	ID=Msa0642960-mRNA-1:cds;Parent=Msa0642960-mRNA-1
chr4_3	CDS	45295534	45295674	45295534	ID=Msa0642960-mRNA-1:cds;Parent=Msa0642960-mRNA-1
chr4_3	CDS	45296096	45296224	45296096	ID=Msa0642960-mRNA-1:cds;Parent=Msa0642960-mRNA-1
chr4_3	CDS	45296344	45296485	45296344	ID=Msa0642960-mRNA-1:cds;Parent=Msa0642960-mRNA-1
chr4_3	CDS	45296784	45296830	45296784	ID=Msa0642960-mRNA-1:cds;Parent=Msa0642960-mRNA-1
chr4_3	CDS	45296918	45296986	45296918	ID=Msa0642960-mRNA-1:cds;Parent=Msa0642960-mRNA-1
chr4_3	CDS	45297090	45297206	45297090	ID=Msa0642960-mRNA-1:cds;Parent=Msa0642960-mRNA-1
chr4_3	CDS	45298115	45298243	45298115	ID=Msa0642960-mRNA-1:cds;Parent=Msa0642960-mRNA-1
chr4_3	CDS	45298810	45298953	45298810	ID=Msa0642960-mRNA-1:cds;Parent=Msa0642960-mRNA-1
chr4_3	three_prime_UTR	45298954	45299351	45298954	ID=Msa0642960-mRNA-1:three_prime_utr;Parent=Msa0642960-mRNA-1

Gene Sequence

>Msa0642960

ATGGATCATATTTTCAAGCTCTTCGCGTTCCTCATTCTCTTTGGATTAGTGAATGCTTGTTTTGCGGAAAATGGTTTTGGACATTGTGAGAGAGTTGTGAAGAGTTGGGCAAGTTCTTCACTTGATAGAGAAATTGGACAAGAAGATAAACATATCCTTAAGGATTTGTTGTTTTTCTTGCATGTTCCTAGAACCGGAGGACGCGCTTATTTTCATTGCTTTTTGAGGAAATTGTATCCGAATTATTTGGAATGTCCTCGATCTTATGATAAGTTGCGATTTGATCCAAGCCAACAAAAATGTAGACTGTTAAGTACACATGATGACTATAGCATGACATCTAAATTTCCAAAGGAGAGAACGTCTGTGGTTACCATACTTAGGGATCCGATTAACCGAGTCTTTAGTACTTACGAATTTTCAATGGAGGTTGCGGCTAGATTTTTGGTGCATCCAAACTTGACATCTGCAACACAGATGGCTTTACGCTTGCGCTCTAAGGCTAAAGGAGTAAGCACATTGGATATCTGGCCTTGGAAGTATCTTGTTCCATGGATGAGAGAAGACCTATTTGCTAGGAGGGAAGCTAGGTATAGTAAGGGAATGAATATTGTTGAGGGCAGTGATCCTTATGATATGAAAGATTTTGCAATGCCTTTACAAGAATACATCAATCATCCTGTGGCTTGGGATATTGTACATAATGGAGCCACATTCCAGTATGGTGGATTGTTCAATCATCAGGTTGCAGGTTTGACAAACAATTCTTATATAGCAGAAGCACATGAAGTGCGTCATTGTGTACAGAAATATAAGGTTCTTGGTAAATATGTGCTACAAGTTGCAAAGAAGAGACTTGACGGTATGTTATATGTTGGTCTTACTGAGGAACACAGAGAATCTGCAACAATGTTTGCAAATGTGGTTGGTTCTCAGGTTATATCACAGCTTAATGCACCAAACACCAGCCTAGATACTATTGAAAATACAGAACAGAGTTCATTTTCAGATGCTGATCCTGATAGCAGTGAACATCAGAATAGCACCTCGGACAGGGGAGCAAGCGAGGCTACTTCAACTGAAAATGGAGAAGCAGCAGAATCAACTATGACTGTTGGGAAACTCATGGACTCTTATGAAACCTGTATTTCTAATTTACGGAGCTCCCAATCAGGCCGACGCATCTCCTCTTTGAAGAGGATTCCGGTGAACTTTACAAAGGAGTCACGACTTCAAGTTCCCGAAGAGGTTCTCCAGCAGCTACGGTCTCTTAACGATCTTGACTTGGAGCTCTATGAATATGCGAGAGCCATTTTCAATAAGCAACATAAAACCTCATCGCTGATCACTGAGGAGAGATGGGATAACATATCAAACAATGAATATGTCATCATCCTGTGGAAGGTTCTTACATTAGCACTAACTCTGTTCTTCCTTCTTTTCTTATTCGTACAAATTGTAAATGCAAGAAGAAGAACGTCGAAGGTAAAAAGGTAA

Protein sequence

>Msa0642960

MDHIFKLFAFLILFGLVNACFAENGFGHCERVVKSWASSSLDREIGQEDKHILKDLLFFLHVPRTGGRAYFHCFLRKLYPNYLECPRSYDKLRFDPSQQKCRLLSTHDDYSMTSKFPKERTSVVTILRDPINRVFSTYEFSMEVAARFLVHPNLTSATQMALRLRSKAKGVSTLDIWPWKYLVPWMREDLFARREARYSKGMNIVEGSDPYDMKDFAMPLQEYINHPVAWDIVHNGATFQYGGLFNHQVAGLTNNSYIAEAHEVRHCVQKYKVLGKYVLQVAKKRLDGMLYVGLTEEHRESATMFANVVGSQVISQLNAPNTSLDTIENTEQSSFSDADPDSSEHQNSTSDRGASEATSTENGEAAESTMTVGKLMDSYETCISNLRSSQSGRRISSLKRIPVNFTKESRLQVPEEVLQQLRSLNDLDLELYEYARAIFNKQHKTSSLITEERWDNISNNEYVIILWKVLTLALTLFFLLFLFVQIVNARRRTSKVKR*