AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1346840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1346840 MtrunA17_Chr2g0292491 92.765 857 62 0 1 857 1 857 0.0 1571
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1346840 AT2G34730.1 33.871 868 472 20 18 855 27 822 4.02e-116 373
Msa1346840 AT2G34730.2 32.529 870 481 22 18 855 27 822 4.70e-103 338

Find 177 sgRNAs with CRISPR-Local

Find 521 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACCATTGTCAACAATTTA+TGG 0.126794 tig0009259:+13631 None:intergenic
CTCAAGTTTGCGTCAGGATT+TGG 0.210354 tig0009259:-15047 Msa1346840:CDS
AGACAGATTGTCAACAAAAT+TGG 0.211709 tig0009259:-13908 Msa1346840:CDS
GCTTCAACTTTGGAAGAAAA+TGG 0.221430 tig0009259:-14887 Msa1346840:CDS
CAATTTATGGATGAGATTAA+TGG 0.223360 tig0009259:+13644 None:intergenic
AAAATTAGTGAATCTTGTTT+AGG 0.224289 tig0009259:-15873 Msa1346840:five_prime_UTR
TTATGACAGTGTTCTGTATT+TGG 0.237519 tig0009259:-15913 Msa1346840:intron
TTTGCAGATTATCGAGATTC+TGG 0.246664 tig0009259:-10597 Msa1346840:intron
GGTTGACTCCATTTGTTTCC+TGG 0.252838 tig0009259:+13665 None:intergenic
GATTAGCAAGCCTGATAGTT+TGG 0.261714 tig0009259:-14846 Msa1346840:CDS
ATCCGTAATTTCTATCCTTC+TGG 0.262986 tig0009259:+15246 None:intergenic
TCGACATAAATCCATCTTTC+CGG 0.263621 tig0009259:+15310 None:intergenic
AACTTGAGATCTCTTTATAT+TGG 0.270030 tig0009259:+15062 None:intergenic
CCAGGGTAATGTTGCAATAT+TGG 0.280911 tig0009259:+11860 None:intergenic
TCTCATGCACTTGAGATTCA+TGG 0.284608 tig0009259:+14756 None:intergenic
GGTGAGTGATTCTGTTATAA+AGG 0.296011 tig0009259:-15689 Msa1346840:CDS
AGGAGACAGCCTTGTTTGTT+TGG 0.299204 tig0009259:-9157 Msa1346840:three_prime_UTR
GACAGTGCTCAAGTTTCTAA+TGG 0.302227 tig0009259:-14200 Msa1346840:CDS
TGAAAGTCTGAAAGATACTA+TGG 0.302610 tig0009259:-15278 Msa1346840:CDS
ATGAACGGTTGATTATTTCT+AGG 0.307582 tig0009259:-15714 Msa1346840:CDS
TCATTTGTCGGCTTCAACTT+TGG 0.307670 tig0009259:-14897 Msa1346840:CDS
AGCATTTGTGTATGGCAAAA+AGG 0.333227 tig0009259:+9193 None:intergenic
TAAATGTCTCTTTAAAGATA+TGG 0.335516 tig0009259:-14312 Msa1346840:CDS
CTCCAGAAGGATAGAAATTA+CGG 0.338178 tig0009259:-15248 Msa1346840:CDS
GGTTCGGATTTGGTTGGTTT+AGG 0.341544 tig0009259:-15355 Msa1346840:CDS
AAATTAGTGAATCTTGTTTA+GGG 0.341553 tig0009259:-15872 Msa1346840:five_prime_UTR
GAAGACTTGCATCTCAAGTA+TGG 0.342654 tig0009259:-14266 Msa1346840:CDS
TTGCAGTTTCAAAGATAGAT+TGG 0.343057 tig0009259:-14543 Msa1346840:CDS
ATTTAGTTCGGGTTCGGATT+TGG 0.349008 tig0009259:-15365 Msa1346840:CDS
TTCTCAGCTTTCTGCTGCTA+TGG 0.356688 tig0009259:-14447 Msa1346840:CDS
CATGCTAGCTGATAAGAATA+AGG 0.365981 tig0009259:-14486 Msa1346840:CDS
GCTAGTGATGATTTGTTTGC+TGG 0.367348 tig0009259:-9286 Msa1346840:three_prime_UTR
GTGAATCTTGTTTAGGGAAG+TGG 0.368230 tig0009259:-15866 Msa1346840:five_prime_UTR
AAAGAGTGAAAGCAAATTCA+TGG 0.379581 tig0009259:+9124 None:intergenic
TTCTGAGTGGCAGGAGGAGC+AGG 0.380725 tig0009259:-15200 Msa1346840:CDS
TTCAACAAGAAGATTTAGTT+CGG 0.381962 tig0009259:-15377 Msa1346840:CDS
GGAGGAGCAGGAGTTTCGTT+TGG 0.387511 tig0009259:-15188 Msa1346840:CDS
CTTGTCTTTCTTCAATGAAA+AGG 0.390403 tig0009259:+14673 None:intergenic
AAGCCTGATAGTTTGGATTC+TGG 0.395489 tig0009259:-14839 Msa1346840:CDS
GAGCCAGAATCCAAACTATC+AGG 0.397077 tig0009259:+14836 None:intergenic
AAATTGAATGAAGTCCTTGA+TGG 0.397269 tig0009259:-14608 Msa1346840:CDS
TTTGTTGTTCTCGGCAGCTT+TGG 0.397817 tig0009259:+14067 None:intergenic
GGTGTGAATAGTTGGGAAAA+GGG 0.397859 tig0009259:+16277 None:intergenic
ATGATTGGTGTCATAATAAG+AGG 0.398440 tig0009259:-14952 Msa1346840:CDS
AGAAAAGCAAAAGATGGAAT+TGG 0.398443 tig0009259:-13961 Msa1346840:CDS
GCAGTTGAGCCAACTCAAAA+AGG 0.400587 tig0009259:-15425 Msa1346840:CDS
AAGGAAATAAATAAAATTAG+AGG 0.402549 tig0009259:-15406 Msa1346840:CDS
AACGACGTGTACCACCTTCA+TGG 0.404579 tig0009259:+15518 None:intergenic
AATTGGGAGGTGTGAATAGT+TGG 0.407537 tig0009259:+16269 None:intergenic
ACAAGGGGTAACAGATGCTT+TGG 0.408825 tig0009259:-13988 Msa1346840:CDS
GGTTAATGCTGTTGAGGAAC+AGG 0.417685 tig0009259:-15662 Msa1346840:CDS
AAGAAGATTTAGTTCGGGTT+CGG 0.417782 tig0009259:-15371 Msa1346840:CDS
TGGTAATTCGCAATTGTATC+CGG 0.418357 tig0009259:-15153 Msa1346840:CDS
AATTATATTCAAAGGAGCTT+TGG 0.419678 tig0009259:-14114 Msa1346840:CDS
TGAGCACATAATTGAGGAAA+TGG 0.425175 tig0009259:-15758 Msa1346840:CDS
ATCGAGTCAATTATGATTGA+AGG 0.426487 tig0009259:-14155 Msa1346840:CDS
CTTCAACTTTGGAAGAAAAT+GGG 0.430798 tig0009259:-14886 Msa1346840:CDS
AAATGCTTTATACACTTAGT+AGG 0.435398 tig0009259:-9177 Msa1346840:three_prime_UTR
AAGTAGTTTATGTGTTGGTT+CGG 0.436422 tig0009259:-15584 Msa1346840:CDS
GAGGGGTTTGTTGTTATGAA+TGG 0.440791 tig0009259:-15832 Msa1346840:CDS
ACAGTGCTCAAGTTTCTAAT+GGG 0.444042 tig0009259:-14199 Msa1346840:CDS
TGGTTTAGGTGGTATTCTGC+AGG 0.444965 tig0009259:-15341 Msa1346840:CDS
TCTGTCAACTTACCCGGTCA+TGG 0.446668 tig0009259:+10526 None:intergenic
AATTATGATTGAAGGGCTAC+TGG 0.447637 tig0009259:-14147 Msa1346840:CDS
GCTTATTTCTCATGGATCCT+TGG 0.447773 tig0009259:-14984 Msa1346840:CDS
CCCCTAAAACACATTATGTA+AGG 0.448319 tig0009259:-9252 Msa1346840:three_prime_UTR
TTTGAACCTTCAACCTGCAT+TGG 0.453171 tig0009259:-16204 Msa1346840:five_prime_UTR
GGGTTTGTTGTTATGAATGG+TGG 0.454609 tig0009259:-15829 Msa1346840:CDS
AGAGATCTCAAGTTTGCGTC+AGG 0.455688 tig0009259:-15053 Msa1346840:CDS
AGAAGCTTGAGGATGATGTT+GGG 0.455998 tig0009259:-14373 Msa1346840:CDS
TGCTCAAGTTTCTAATGGGC+TGG 0.456563 tig0009259:-14195 Msa1346840:CDS
TCGGATTTGGTTGGTTTAGG+TGG 0.456606 tig0009259:-15352 Msa1346840:CDS
ATTGGGAGGTGTGAATAGTT+GGG 0.459958 tig0009259:+16270 None:intergenic
GTGTATAAAGCATTTGTGTA+TGG 0.461237 tig0009259:+9185 None:intergenic
GTGAGTGATTCTGTTATAAA+GGG 0.464197 tig0009259:-15688 Msa1346840:CDS
AAGCTAAGTAGTTTATGTGT+TGG 0.468005 tig0009259:-15589 Msa1346840:CDS
TCAACAAGAAGATTTAGTTC+GGG 0.472303 tig0009259:-15376 Msa1346840:CDS
GAAATCAACAGTGGAAGAAA+AGG 0.472349 tig0009259:-14021 Msa1346840:CDS
AGGTGTGAATAGTTGGGAAA+AGG 0.476008 tig0009259:+16276 None:intergenic
GTGCAACGTATATCCTTTCA+AGG 0.477481 tig0009259:+11897 None:intergenic
GTTGCAATATTGGTGAATAA+TGG 0.481974 tig0009259:+11870 None:intergenic
TCTCAGCTTTCTGCTGCTAT+GGG 0.484028 tig0009259:-14446 Msa1346840:CDS
AAGGGAAACCAGGAAACAAA+TGG 0.491127 tig0009259:-13673 Msa1346840:CDS
GCAATTTCTCATTTCCATCA+AGG 0.492086 tig0009259:+14594 None:intergenic
GTGCACTGGCTTTGTTCTTG+AGG 0.494154 tig0009259:+13047 None:intergenic
TGATTCTGTTATAAAGGGTA+TGG 0.496821 tig0009259:-15683 Msa1346840:CDS
TGTGGAGAACAGTAAAGAGT+TGG 0.497087 tig0009259:-13883 Msa1346840:CDS
ACTGGGACGCTTATTTCTCA+TGG 0.498313 tig0009259:-14992 Msa1346840:CDS
AACAACACTTTCTGAGTGGC+AGG 0.500450 tig0009259:-15209 Msa1346840:CDS
GAAGCTCCAATGCAGGTTGA+AGG 0.505438 tig0009259:+16198 None:intergenic
GCTTTCGACAGATCATTTGT+CGG 0.506401 tig0009259:-14909 Msa1346840:CDS
ACGACGTGTACCACCTTCAT+GGG 0.509179 tig0009259:+15519 None:intergenic
ATTAATCAAATTATATTCAA+AGG 0.512709 tig0009259:-14122 Msa1346840:CDS
TTTCCTTTGCTGCTGCAACT+AGG 0.513015 tig0009259:+13844 None:intergenic
AGCTAAAATGATGTGGTCTT+CGG 0.514765 tig0009259:-15557 Msa1346840:CDS
AAACTTGTTTAACCCATGAC+CGG 0.515650 tig0009259:-10539 Msa1346840:exon
CAATATTGCAACATTACCCT+GGG 0.515679 tig0009259:-11859 Msa1346840:CDS
ATGTTTCAAGAAATTGTATG+AGG 0.515816 tig0009259:-13581 Msa1346840:intron
CAGAAGCTTGAGGATGATGT+TGG 0.516189 tig0009259:-14374 Msa1346840:CDS
AAATAATTGTGATGCGGTGG+TGG 0.516961 tig0009259:+16305 None:intergenic
GGAACAAGAAAAGCAAAAGA+TGG 0.518661 tig0009259:-13967 Msa1346840:CDS
TGTTATGAATGGTGGTGAAA+AGG 0.519449 tig0009259:-15821 Msa1346840:CDS
TACATGAAGATCTCGAACAA+AGG 0.522789 tig0009259:-13791 Msa1346840:CDS
AGTTCGGGTTCGGATTTGGT+TGG 0.524274 tig0009259:-15361 Msa1346840:CDS
CAATCTCCTGCTGCAAACTC+CGG 0.526723 tig0009259:+15134 None:intergenic
TTGTATCCGGAGTTTGCAGC+AGG 0.528620 tig0009259:-15140 Msa1346840:CDS
ACATGAAGATCTCGAACAAA+GGG 0.529153 tig0009259:-13790 Msa1346840:CDS
TGCACTTAAAACCATGGGAT+TGG 0.529855 tig0009259:-13029 Msa1346840:CDS
AGGAGAATGTGCCGGAAAGA+TGG 0.531020 tig0009259:-15321 Msa1346840:CDS
CCTTGGAGCATACTGATGAT+TGG 0.531339 tig0009259:-14967 Msa1346840:CDS
ACGGTTGATTATTTCTAGGA+TGG 0.533363 tig0009259:-15710 Msa1346840:CDS
AAAAGGAGAATTTATTACAA+GGG 0.533806 tig0009259:-14004 Msa1346840:CDS
TCGTTTGGAAATTGAGCGGA+TGG 0.537346 tig0009259:-15173 Msa1346840:CDS
CTTGTAAGAAGAGAATTGAC+TGG 0.539649 tig0009259:-10572 Msa1346840:CDS
GTGTGAATAGTTGGGAAAAG+GGG 0.541301 tig0009259:+16278 None:intergenic
CTGTCAACTTACCCGGTCAT+GGG 0.544847 tig0009259:+10527 None:intergenic
TAGGGAAGTGGAAATGATGA+AGG 0.545644 tig0009259:-15854 Msa1346840:exon
TTTGGATTCTGGCTCTCTGA+AGG 0.545981 tig0009259:-14828 Msa1346840:CDS
CCAATATTGCAACATTACCC+TGG 0.549573 tig0009259:-11860 Msa1346840:CDS
CTATGGATTCTTTCTCCAGA+AGG 0.549982 tig0009259:-15261 Msa1346840:CDS
GAAGTGGAAATGATGAAGGA+GGG 0.552664 tig0009259:-15850 Msa1346840:exon
GGGTATGGTTAATGCTGTTG+AGG 0.552686 tig0009259:-15668 Msa1346840:CDS
GTGTATTGAGGCAAAAGAAA+GGG 0.560124 tig0009259:-13691 Msa1346840:CDS
TAATAAATGAGAGTGAGAAA+AGG 0.560276 tig0009259:+16351 None:intergenic
AAAGGAGAATTTATTACAAG+GGG 0.560840 tig0009259:-14003 Msa1346840:CDS
CTCTTCTTAGACTCCTTGAA+AGG 0.561258 tig0009259:-11910 Msa1346840:CDS
AGTGTATTGAGGCAAAAGAA+AGG 0.562250 tig0009259:-13692 Msa1346840:CDS
AAACCTAGTTGCAGCAGCAA+AGG 0.563546 tig0009259:-13847 Msa1346840:CDS
GAAAAGGAGAATTTATTACA+AGG 0.565102 tig0009259:-14005 Msa1346840:CDS
GCCAGTGCACTTAAAACCAT+GGG 0.568732 tig0009259:-13034 Msa1346840:CDS
AGATGCATTGGAGTGTATTG+AGG 0.572251 tig0009259:-13703 Msa1346840:CDS
ATCTGAGAATCTTCAACTGA+AGG 0.576258 tig0009259:-14510 Msa1346840:CDS
TTGCTTGTACACCAATCCCA+TGG 0.579201 tig0009259:+13018 None:intergenic
AAGAGAGAATCTGGAACGGT+GGG 0.580152 tig0009259:+16233 None:intergenic
TTGTCAACAAAATTGGATTG+TGG 0.582697 tig0009259:-13901 Msa1346840:CDS
TCTTGGTGAGCACATAATTG+AGG 0.583633 tig0009259:-15764 Msa1346840:CDS
AAAGAGAGAATCTGGAACGG+TGG 0.585070 tig0009259:+16232 None:intergenic
CATCCATAAATTGTTGACAA+TGG 0.586642 tig0009259:-13634 Msa1346840:CDS
TAAACTGTCAAGCTGTTGAG+AGG 0.588332 tig0009259:+13938 None:intergenic
CTATTGAATCTGAAAGAAAG+AGG 0.588345 tig0009259:-14701 Msa1346840:CDS
TCGAGTCAATTATGATTGAA+GGG 0.591000 tig0009259:-14154 Msa1346840:CDS
TCGAAAGCTTCAAGTGGACA+TGG 0.594594 tig0009259:+14924 None:intergenic
TTATGTTGAAGCTCCAATGC+AGG 0.595093 tig0009259:+16191 None:intergenic
AAAGGAAATTGAAGAATACA+AGG 0.596002 tig0009259:-13829 Msa1346840:CDS
AGCCAGTGCACTTAAAACCA+TGG 0.598471 tig0009259:-13035 Msa1346840:CDS
GGAAGTGGAAATGATGAAGG+AGG 0.600066 tig0009259:-15851 Msa1346840:exon
TTGGAAGAAAATGGGAAGCA+CGG 0.601297 tig0009259:-14878 Msa1346840:CDS
AACTTGTTTAACCCATGACC+GGG 0.603219 tig0009259:-10538 Msa1346840:intron
AGGCAAAAGAAAGGGAAACC+AGG 0.604868 tig0009259:-13683 Msa1346840:CDS
ACAATCTGTTCAGAAGCTTG+AGG 0.610988 tig0009259:-14384 Msa1346840:CDS
AGATAGATTTATGAAGCCTG+TGG 0.611012 tig0009259:-15473 Msa1346840:CDS
AAGGATGATGATGAGAGTCT+TGG 0.618836 tig0009259:-15781 Msa1346840:CDS
TATTCTGCAGGAGAATGTGC+CGG 0.623360 tig0009259:-15329 Msa1346840:CDS
GTGAAATAATTGTGATGCGG+TGG 0.624794 tig0009259:+16302 None:intergenic
GATCTGTCGAAAGCTTCAAG+TGG 0.625999 tig0009259:+14918 None:intergenic
TCTTGCAAAGGCTGAAGCAG+AGG 0.627303 tig0009259:-12972 Msa1346840:intron
GAAGCTTGAGGATGATGTTG+GGG 0.628459 tig0009259:-14372 Msa1346840:CDS
ATACTAGAGCCAAACAAACA+AGG 0.638503 tig0009259:+9148 None:intergenic
CGTTGTAATGAAACCCATGA+AGG 0.644493 tig0009259:-15532 Msa1346840:CDS
AGAAACTTGAGCACTGTCAA+CGG 0.646105 tig0009259:+14205 None:intergenic
GATAGATTTATGAAGCCTGT+GGG 0.646275 tig0009259:-15472 Msa1346840:CDS
AGTTTCGTTTGGAAATTGAG+CGG 0.647114 tig0009259:-15177 Msa1346840:CDS
AAGTGGAAATGATGAAGGAG+GGG 0.647655 tig0009259:-15849 Msa1346840:exon
CGGATGAAGCTAAAATGATG+TGG 0.651813 tig0009259:-15564 Msa1346840:CDS
CCAATCATCAGTATGCTCCA+AGG 0.652705 tig0009259:+14967 None:intergenic
TGTAATGAAACCCATGAAGG+TGG 0.653529 tig0009259:-15529 Msa1346840:CDS
TGATTGGTGTCATAATAAGA+GGG 0.657093 tig0009259:-14951 Msa1346840:CDS
AACACTTTCTGAGTGGCAGG+AGG 0.664523 tig0009259:-15206 Msa1346840:CDS
TCAAATTTAAGACTACCCAC+AGG 0.666742 tig0009259:+15457 None:intergenic
AATTACGGATCAGTTATCGA+AGG 0.666771 tig0009259:-15233 Msa1346840:CDS
GTCACAGCAACAACTGACTG+AGG 0.687357 tig0009259:-14417 Msa1346840:CDS
ACTTACGTTGAAATCAACAG+TGG 0.697644 tig0009259:-14030 Msa1346840:CDS
TAATGCTGTTGAGGAACAGG+CGG 0.704892 tig0009259:-15659 Msa1346840:CDS
TGGAAAGAGAGAATCTGGAA+CGG 0.705022 tig0009259:+16229 None:intergenic
AGGTAACAACACTTTCTGAG+TGG 0.720674 tig0009259:-15213 Msa1346840:CDS
GGTGTGAAATAATTGTGATG+CGG 0.752734 tig0009259:+16299 None:intergenic
AATATTGCAACATTACCCTG+GGG 0.779062 tig0009259:-11858 Msa1346840:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAAAAATAAACAAAAG+GGG + tig0009259:9290-9309 None:intergenic 10.0%
!! CATAATAAAAATAAACAAAA+GGG + tig0009259:9291-9310 None:intergenic 10.0%
!! ATTAATCAAATTATATTCAA+AGG - tig0009259:11170-11189 Msa1346840:intron 10.0%
!! ATTTCAAAAAATATCTTATA+GGG + tig0009259:12718-12737 None:intergenic 10.0%
!! GCATAATAAAAATAAACAAA+AGG + tig0009259:9292-9311 None:intergenic 15.0%
!! AAGGAAATAAATAAAATTAG+AGG - tig0009259:9886-9905 Msa1346840:intron 15.0%
!!! TAATTTTTTGAAGGATAATT+TGG - tig0009259:11922-11941 Msa1346840:CDS 15.0%
!!! AATTTTTTGAAGGATAATTT+GGG - tig0009259:11923-11942 Msa1346840:CDS 15.0%
!! AATTATTACAATTATTAGAG+AGG + tig0009259:11979-11998 None:intergenic 15.0%
!! CATTTCAAAAAATATCTTAT+AGG + tig0009259:12719-12738 None:intergenic 15.0%
!!! AATTGTAATTTGTAAAAACT+TGG - tig0009259:12928-12947 Msa1346840:intron 15.0%
!!! ATTGTAATTTGTAAAAACTT+GGG - tig0009259:12929-12948 Msa1346840:intron 15.0%
!! AAAAATTATATTTAGAAGTG+GGG + tig0009259:13029-13048 None:intergenic 15.0%
!! CAAAAATTATATTTAGAAGT+GGG + tig0009259:13030-13049 None:intergenic 15.0%
!!! TAGTTGTTTTTAAATATAGT+TGG - tig0009259:13681-13700 Msa1346840:CDS 15.0%
!! TTATACTTAACAAATCTAAT+TGG + tig0009259:14404-14423 None:intergenic 15.0%
!!! TAGTTTTCTTATTTGTAATT+TGG - tig0009259:14577-14596 Msa1346840:CDS 15.0%
!!! CTTTCTAAAAACATTTTTTT+TGG - tig0009259:14993-15012 Msa1346840:CDS 15.0%
!! TACAAGATTTAAACATAAAA+TGG + tig0009259:15938-15957 None:intergenic 15.0%
!! TTTATGTTTAAATCTTGTAA+TGG - tig0009259:15939-15958 Msa1346840:intron 15.0%
!!! ATCTGTATATGTTAATTTTA+TGG - tig0009259:16243-16262 Msa1346840:five_prime_UTR 15.0%
!!! AGTTTTTTTTTTCTTTCTCT+GGG - tig0009259:9312-9331 Msa1346840:three_prime_UTR 20.0%
!!! AAAATTAGTGAATCTTGTTT+AGG - tig0009259:9419-9438 Msa1346840:intron 20.0%
!!! AAATTAGTGAATCTTGTTTA+GGG - tig0009259:9420-9439 Msa1346840:intron 20.0%
!!! TATTTATTTCCTTTTTGAGT+TGG + tig0009259:9879-9898 None:intergenic 20.0%
!!! TAAATGTCTCTTTAAAGATA+TGG - tig0009259:10980-10999 Msa1346840:intron 20.0%
!!! ATATTTTAGTTTGTTGTTCT+CGG + tig0009259:11237-11256 None:intergenic 20.0%
!! AAAAGGAGAATTTATTACAA+GGG - tig0009259:11288-11307 Msa1346840:intron 20.0%
!!! AAAATTTATTTTAACCAGCA+AGG - tig0009259:11862-11881 Msa1346840:CDS 20.0%
!!! ATTTTTTGAAGGATAATTTG+GGG - tig0009259:11924-11943 Msa1346840:CDS 20.0%
!! TTAAACTCGATTTCATATTA+TGG - tig0009259:12145-12164 Msa1346840:intron 20.0%
!!! TCATATTATGGTAATGATTA+TGG - tig0009259:12157-12176 Msa1346840:intron 20.0%
!! AAAAAATTATGTGATGTTTC+TGG + tig0009259:12353-12372 None:intergenic 20.0%
!! AAAATTATATTTAGAAGTGG+GGG + tig0009259:13028-13047 None:intergenic 20.0%
!! GCAAAAATTATATTTAGAAG+TGG + tig0009259:13031-13050 None:intergenic 20.0%
!!! ATTAGATATCTTTTCAAGTT+GGG + tig0009259:13237-13256 None:intergenic 20.0%
!! TTAATGATTGTACATAATTG+AGG - tig0009259:13485-13504 Msa1346840:intron 20.0%
!! ATTAAATATGTGTACTCTTT+GGG + tig0009259:13653-13672 None:intergenic 20.0%
!! TATTAAATATGTGTACTCTT+TGG + tig0009259:13654-13673 None:intergenic 20.0%
!!! TTTTAAATATAGTTGGATGT+TGG - tig0009259:13688-13707 Msa1346840:CDS 20.0%
!! TTTAAATATAGTTGGATGTT+GGG - tig0009259:13689-13708 Msa1346840:CDS 20.0%
!!! AACATTAAAACAAAGTATCA+GGG + tig0009259:13961-13980 None:intergenic 20.0%
!!! TAACATTAAAACAAAGTATC+AGG + tig0009259:13962-13981 None:intergenic 20.0%
!! ATTACTAAGTAATGTAGAAT+TGG - tig0009259:14072-14091 Msa1346840:CDS 20.0%
!!! AACAACAAAACTTTCATTTT+CGG + tig0009259:14099-14118 None:intergenic 20.0%
!! GTCTTATATCATAATCATAT+TGG + tig0009259:14188-14207 None:intergenic 20.0%
!! CTAATAAACCAAAACAAATA+CGG + tig0009259:14260-14279 None:intergenic 20.0%
!! GTCACATGTTTAATTAAATT+AGG - tig0009259:14526-14545 Msa1346840:CDS 20.0%
!! ACATGTTTAATTAAATTAGG+AGG - tig0009259:14529-14548 Msa1346840:CDS 20.0%
!! ATTTCCTTATCAATACTTAT+CGG + tig0009259:14840-14859 None:intergenic 20.0%
!!! AATTTTGATACACAGAAAAA+TGG - tig0009259:15084-15103 Msa1346840:CDS 20.0%
!! ATATACCTTAAGAGAATTAT+AGG + tig0009259:15235-15254 None:intergenic 20.0%
!!! TTTCATTTTCATCTTTCTTT+TGG - tig0009259:15718-15737 Msa1346840:CDS 20.0%
! TAATAAATGAGAGTGAGAAA+AGG + tig0009259:8944-8963 None:intergenic 25.0%
! AAGAATGAAAAATAATTGGG+AGG + tig0009259:9039-9058 None:intergenic 25.0%
! GGGAAGAATGAAAAATAATT+GGG + tig0009259:9042-9061 None:intergenic 25.0%
! TGGGAAGAATGAAAAATAAT+TGG + tig0009259:9043-9062 None:intergenic 25.0%
!!! AATCCTTATACCTGTTTTTT+GGG + tig0009259:9188-9207 None:intergenic 25.0%
!!! AAATCCTTATACCTGTTTTT+TGG + tig0009259:9189-9208 None:intergenic 25.0%
! TCCAAACTTTAATCATGTTA+TGG + tig0009259:9246-9265 None:intergenic 25.0%
!!! AGTTTGGATTTTTAGCTATT+TGG - tig0009259:9258-9277 Msa1346840:three_prime_UTR 25.0%
!!! GTTTGGATTTTTAGCTATTT+GGG - tig0009259:9259-9278 Msa1346840:three_prime_UTR 25.0%
!!! CAGTTTTTTTTTTCTTTCTC+TGG - tig0009259:9311-9330 Msa1346840:three_prime_UTR 25.0%
!!! TGTATTTGGATTGTTTTGAA+TGG - tig0009259:9393-9412 Msa1346840:intron 25.0%
!!! TTTTTGATGATATCGATGAA+CGG - tig0009259:9563-9582 Msa1346840:intron 25.0%
! TTCAACAAGAAGATTTAGTT+CGG - tig0009259:9915-9934 Msa1346840:intron 25.0%
! AACTTGAGATCTCTTTATAT+TGG + tig0009259:10233-10252 None:intergenic 25.0%
! AATTATATTCAAAGGAGCTT+TGG - tig0009259:11178-11197 Msa1346840:intron 25.0%
! GAAAAGGAGAATTTATTACA+AGG - tig0009259:11287-11306 Msa1346840:intron 25.0%
! AAAGGAGAATTTATTACAAG+GGG - tig0009259:11289-11308 Msa1346840:intron 25.0%
! AAAGGAAATTGAAGAATACA+AGG - tig0009259:11463-11482 Msa1346840:intron 25.0%
! AAAAAATCATCAAGATGCAT+TGG - tig0009259:11577-11596 Msa1346840:intron 25.0%
! CAATTTATGGATGAGATTAA+TGG + tig0009259:11651-11670 None:intergenic 25.0%
! TAACCATTGTCAACAATTTA+TGG + tig0009259:11664-11683 None:intergenic 25.0%
! ATGTTTCAAGAAATTGTATG+AGG - tig0009259:11711-11730 Msa1346840:intron 25.0%
! ACGAGACATTAAATTAGAAA+AGG + tig0009259:11757-11776 None:intergenic 25.0%
!! TTTTAACGCTTCATTATTGA+TGG + tig0009259:11846-11865 None:intergenic 25.0%
! GACATTACCTTTGAATTATT+TGG - tig0009259:11884-11903 Msa1346840:CDS 25.0%
! TCACATTCCAAATAATTCAA+AGG + tig0009259:11894-11913 None:intergenic 25.0%
!! TTTCTATCCACAAAATTTTC+AGG + tig0009259:12070-12089 None:intergenic 25.0%
!! TTATCTATTTCTCAATCTTG+TGG - tig0009259:12424-12443 Msa1346840:intron 25.0%
! ATGGGAACAAGTAAAAATTT+GGG + tig0009259:12524-12543 None:intergenic 25.0%
! TATGGGAACAAGTAAAAATT+TGG + tig0009259:12525-12544 None:intergenic 25.0%
!!! AAATGTGATTTTGATTACCA+TGG + tig0009259:12563-12582 None:intergenic 25.0%
! AAATGTTATAAGTGCCAAAA+AGG - tig0009259:12744-12763 Msa1346840:intron 25.0%
! TCTGTGTATGTTAACATTTA+GGG + tig0009259:12837-12856 None:intergenic 25.0%
! TTCTGTGTATGTTAACATTT+AGG + tig0009259:12838-12857 None:intergenic 25.0%
! ATGTTAACATACACAGAAAA+TGG - tig0009259:12840-12859 Msa1346840:intron 25.0%
! GAAAATATGAAAATACGTCA+AGG - tig0009259:12903-12922 Msa1346840:intron 25.0%
!! TTGTAAAAACTTGGGTATTT+TGG - tig0009259:12937-12956 Msa1346840:intron 25.0%
! AGAAGGAGAAAAAATAGATT+TGG - tig0009259:13143-13162 Msa1346840:intron 25.0%
!!! GATTAGATATCTTTTCAAGT+TGG + tig0009259:13238-13257 None:intergenic 25.0%
! AAAAGATATCTAATCTTCAC+TGG - tig0009259:13243-13262 Msa1346840:intron 25.0%
! AAAGATATCTAATCTTCACT+GGG - tig0009259:13244-13263 Msa1346840:intron 25.0%
! TGATAAAAATAGACTCTCTA+TGG + tig0009259:13540-13559 None:intergenic 25.0%
! GCTGTTTATTATACAATAGT+GGG - tig0009259:13565-13584 Msa1346840:intron 25.0%
! TATTAGAAAACTACTCATCA+TGG - tig0009259:13768-13787 Msa1346840:CDS 25.0%
! ATGATTAATATAACCAACTG+CGG - tig0009259:13839-13858 Msa1346840:CDS 25.0%
! GAGACATTCATGAAAAAAAA+AGG - tig0009259:13893-13912 Msa1346840:CDS 25.0%
! ATCTAATTGGACACTAAAAA+TGG + tig0009259:14391-14410 None:intergenic 25.0%
! GTTAAGTATAACTTGAAAGA+TGG - tig0009259:14413-14432 Msa1346840:CDS 25.0%
! TGTTTAATTAAATTAGGAGG+TGG - tig0009259:14532-14551 Msa1346840:CDS 25.0%
! TTTCCTTATCAATACTTATC+GGG + tig0009259:14839-14858 None:intergenic 25.0%
! TTGAACCTATAATTCTCTTA+AGG - tig0009259:15227-15246 Msa1346840:CDS 25.0%
! CAAGAAACATAGAAAGTAAT+TGG - tig0009259:15339-15358 Msa1346840:CDS 25.0%
! AGGACTAAGATAAATTATTC+AGG + tig0009259:15526-15545 None:intergenic 25.0%
! ATGAACTATTAAGGTCTATT+TGG + tig0009259:15694-15713 None:intergenic 25.0%
!! TTTGGTTTCTCATTATGAAT+TGG - tig0009259:15736-15755 Msa1346840:CDS 25.0%
!!! TTAAATCTTGTAATGGATAC+AGG - tig0009259:15946-15965 Msa1346840:intron 25.0%
!! TCCTTACATAATGTGTTTTA+GGG + tig0009259:16044-16063 None:intergenic 25.0%
!! TTCCTTACATAATGTGTTTT+AGG + tig0009259:16045-16064 None:intergenic 25.0%
! AAATGCTTTATACACTTAGT+AGG - tig0009259:16115-16134 Msa1346840:intron 25.0%
AAAAATGGAAAGAGAGAATC+TGG + tig0009259:9071-9090 None:intergenic 30.0%
!!! ATCCTTATACCTGTTTTTTG+GGG + tig0009259:9187-9206 None:intergenic 30.0%
GCCATAACATGATTAAAGTT+TGG - tig0009259:9242-9261 Msa1346840:three_prime_UTR 30.0%
TTATGACAGTGTTCTGTATT+TGG - tig0009259:9379-9398 Msa1346840:intron 30.0%
! ATGAACGGTTGATTATTTCT+AGG - tig0009259:9578-9597 Msa1346840:intron 30.0%
GTGAGTGATTCTGTTATAAA+GGG - tig0009259:9604-9623 Msa1346840:intron 30.0%
TGATTCTGTTATAAAGGGTA+TGG - tig0009259:9609-9628 Msa1346840:intron 30.0%
AAGCTAAGTAGTTTATGTGT+TGG - tig0009259:9703-9722 Msa1346840:intron 30.0%
!! AAGTAGTTTATGTGTTGGTT+CGG - tig0009259:9708-9727 Msa1346840:intron 30.0%
!!! TCGTTTTTTAGATGGTGTTA+TGG - tig0009259:9792-9811 Msa1346840:intron 30.0%
! TCAACAAGAAGATTTAGTTC+GGG - tig0009259:9916-9935 Msa1346840:intron 30.0%
TGAAAGTCTGAAAGATACTA+TGG - tig0009259:10014-10033 Msa1346840:intron 30.0%
!! ATGATTGGTGTCATAATAAG+AGG - tig0009259:10340-10359 Msa1346840:intron 30.0%
!! TGATTGGTGTCATAATAAGA+GGG - tig0009259:10341-10360 Msa1346840:intron 30.0%
! CTTCAACTTTGGAAGAAAAT+GGG - tig0009259:10406-10425 Msa1346840:intron 30.0%
! CCTAAGACAAAAGTTTTCTT+CGG + tig0009259:10565-10584 None:intergenic 30.0%
! AAGAAAACTTTTGTCTTAGG+CGG - tig0009259:10565-10584 Msa1346840:CDS 30.0%
CTATTGAATCTGAAAGAAAG+AGG - tig0009259:10591-10610 Msa1346840:CDS 30.0%
CTTGTCTTTCTTCAATGAAA+AGG + tig0009259:10622-10641 None:intergenic 30.0%
! CTTTTCATTGAAGAAAGACA+AGG - tig0009259:10620-10639 Msa1346840:intron 30.0%
!! GACTTCATTCAATTTTGAGA+TGG + tig0009259:10679-10698 None:intergenic 30.0%
AAATTGAATGAAGTCCTTGA+TGG - tig0009259:10684-10703 Msa1346840:intron 30.0%
TTGCAGTTTCAAAGATAGAT+TGG - tig0009259:10749-10768 Msa1346840:intron 30.0%
ATCGAGTCAATTATGATTGA+AGG - tig0009259:11137-11156 Msa1346840:intron 30.0%
TCGAGTCAATTATGATTGAA+GGG - tig0009259:11138-11157 Msa1346840:intron 30.0%
AGAAAAGCAAAAGATGGAAT+TGG - tig0009259:11331-11350 Msa1346840:intron 30.0%
AGACAGATTGTCAACAAAAT+TGG - tig0009259:11384-11403 Msa1346840:intron 30.0%
TTGTCAACAAAATTGGATTG+TGG - tig0009259:11391-11410 Msa1346840:intron 30.0%
CATCCATAAATTGTTGACAA+TGG - tig0009259:11658-11677 Msa1346840:intron 30.0%
!!! ACGTGCTTCTAATTTTTTGA+AGG - tig0009259:11913-11932 Msa1346840:CDS 30.0%
GTTCATATTTGTGTTCAACT+TGG - tig0009259:12028-12047 Msa1346840:intron 30.0%
GACATAAGGATGAAGTAAAT+TGG + tig0009259:12093-12112 None:intergenic 30.0%
TCATCCTTATGTCAAGAAAA+CGG - tig0009259:12100-12119 Msa1346840:intron 30.0%
! AAAACCGTTTTCTTGACATA+AGG + tig0009259:12107-12126 None:intergenic 30.0%
! ATATATGGAACCATCTTTTC+AGG - tig0009259:12193-12212 Msa1346840:intron 30.0%
! AAAAAGTTCTGATCTTGCAA+AGG - tig0009259:12308-12327 Msa1346840:intron 30.0%
!! AATATGCATTTGCTATGCTA+TGG - tig0009259:12387-12406 Msa1346840:intron 30.0%
!! ATATGCATTTGCTATGCTAT+GGG - tig0009259:12388-12407 Msa1346840:intron 30.0%
TGGGAACAAGTAAAAATTTG+GGG + tig0009259:12523-12542 None:intergenic 30.0%
!! GGCGACACTTATATTTTTAT+GGG + tig0009259:12542-12561 None:intergenic 30.0%
!! TGGCGACACTTATATTTTTA+TGG + tig0009259:12543-12562 None:intergenic 30.0%
! TAAAAATATAAGTGTCGCCA+TGG - tig0009259:12543-12562 Msa1346840:intron 30.0%
ACAGTTAATCGTCAAATCTT+AGG - tig0009259:12675-12694 Msa1346840:intron 30.0%
GGTGAAGAAATAATTAGTAC+TGG + tig0009259:12778-12797 None:intergenic 30.0%
!! CTTCACCATTCTAATTTGTT+TGG - tig0009259:12791-12810 Msa1346840:intron 30.0%
AACAGCCAAACAAATTAGAA+TGG + tig0009259:12799-12818 None:intergenic 30.0%
CAACCATATGATTAATTCAC+TGG + tig0009259:13066-13085 None:intergenic 30.0%
CAGTGAATTAATCATATGGT+TGG - tig0009259:13064-13083 Msa1346840:CDS 30.0%
! AATCATATGGTTGGTTCAAA+TGG - tig0009259:13073-13092 Msa1346840:CDS 30.0%
! ATCATATGGTTGGTTCAAAT+GGG - tig0009259:13074-13093 Msa1346840:CDS 30.0%
! AAGCAAGTAGTGTTATTAGA+AGG - tig0009259:13126-13145 Msa1346840:intron 30.0%
! AGATTTGGAATCAATGATCA+CGG - tig0009259:13158-13177 Msa1346840:intron 30.0%
! CTTGGTTCACCAAAATTTTA+CGG + tig0009259:13205-13224 None:intergenic 30.0%
!! GTAAAATTTTGGTGAACCAA+GGG - tig0009259:13204-13223 Msa1346840:intron 30.0%
AAAGGTCAATTACTAGACTT+AGG + tig0009259:13315-13334 None:intergenic 30.0%
!!! ATCTTTCAGGTTGATCTTTT+AGG - tig0009259:13345-13364 Msa1346840:intron 30.0%
!!! TCTTTCAGGTTGATCTTTTA+GGG - tig0009259:13346-13365 Msa1346840:intron 30.0%
GTTGCAATATTGGTGAATAA+TGG + tig0009259:13425-13444 None:intergenic 30.0%
CATAATTGAGGTATATGTAG+TGG - tig0009259:13497-13516 Msa1346840:intron 30.0%
CGCTGTTTATTATACAATAG+TGG - tig0009259:13564-13583 Msa1346840:intron 30.0%
TTCTAATAGAAACTGATGCT+TGG + tig0009259:13756-13775 None:intergenic 30.0%
ATCATGGTGTGTGATATAAA+GGG - tig0009259:13784-13803 Msa1346840:CDS 30.0%
TCTACATTGCATAACAGAAT+GGG - tig0009259:13815-13834 Msa1346840:CDS 30.0%
TATTGTAAATCCAACAGCTT+AGG - tig0009259:13997-14016 Msa1346840:CDS 30.0%
ATTGTAAATCCAACAGCTTA+GGG - tig0009259:13998-14017 Msa1346840:CDS 30.0%
!! TTTGTTGTTGCAAACATGAA+TGG - tig0009259:14110-14129 Msa1346840:CDS 30.0%
TGATTATGATATAAGACGTG+TGG - tig0009259:14191-14210 Msa1346840:CDS 30.0%
TGACATTATGATAGTTGTAC+TGG - tig0009259:14234-14253 Msa1346840:CDS 30.0%
CCAAAACTAACAATAGTAAC+CGG - tig0009259:14479-14498 Msa1346840:CDS 30.0%
ATTCATTGTCTTCATGAAGA+AGG - tig0009259:14608-14627 Msa1346840:CDS 30.0%
!! AAACCCGATAAGTATTGATA+AGG - tig0009259:14833-14852 Msa1346840:CDS 30.0%
AGAAAAATGGAAGACAAATC+AGG - tig0009259:15097-15116 Msa1346840:CDS 30.0%
GAAAAATGGAAGACAAATCA+GGG - tig0009259:15098-15117 Msa1346840:CDS 30.0%
GAAAATTACTCTCTCAAACA+AGG + tig0009259:15424-15443 None:intergenic 30.0%
TAAGGTCTATTTGGAAGTTT+AGG + tig0009259:15685-15704 None:intergenic 30.0%
TGAAACTGCATGAACTATTA+AGG + tig0009259:15703-15722 None:intergenic 30.0%
!! ATTACTAGGGTATCCTTTTT+GGG - tig0009259:15794-15813 Msa1346840:CDS 30.0%
!!! AGTTTGTTTTAGCAAAACAG+TGG - tig0009259:15828-15847 Msa1346840:CDS 30.0%
!! CTTACATAATGTGTTTTAGG+GGG + tig0009259:16042-16061 None:intergenic 30.0%
!! CCTTACATAATGTGTTTTAG+GGG + tig0009259:16043-16062 None:intergenic 30.0%
! GTGTATAAAGCATTTGTGTA+TGG + tig0009259:16110-16129 None:intergenic 30.0%
AAAGAGTGAAAGCAAATTCA+TGG + tig0009259:16171-16190 None:intergenic 30.0%
GGTGTGAAATAATTGTGATG+CGG + tig0009259:8996-9015 None:intergenic 35.0%
!!! TTTTTGGGGTAAATGAACAC+TGG + tig0009259:9173-9192 None:intergenic 35.0%
GTTCATTTACCCCAAAAAAC+AGG - tig0009259:9175-9194 Msa1346840:three_prime_UTR 35.0%
TACCCCAAAAAACAGGTATA+AGG - tig0009259:9182-9201 Msa1346840:three_prime_UTR 35.0%
! TGTTATGAATGGTGGTGAAA+AGG - tig0009259:9471-9490 Msa1346840:intron 35.0%
!! GGTGAAAAGGTTTTTGAGAA+TGG - tig0009259:9484-9503 Msa1346840:intron 35.0%
!! GGTTTTTGAGAATGGTGTTA+AGG - tig0009259:9492-9511 Msa1346840:intron 35.0%
TGAGCACATAATTGAGGAAA+TGG - tig0009259:9534-9553 Msa1346840:intron 35.0%
!! ACGGTTGATTATTTCTAGGA+TGG - tig0009259:9582-9601 Msa1346840:intron 35.0%
GGTGAGTGATTCTGTTATAA+AGG - tig0009259:9603-9622 Msa1346840:intron 35.0%
GAGAATTGCGCAAAAAGAAT+CGG - tig0009259:9660-9679 Msa1346840:intron 35.0%
AGCTAAAATGATGTGGTCTT+CGG - tig0009259:9735-9754 Msa1346840:intron 35.0%
AGATAGATTTATGAAGCCTG+TGG - tig0009259:9819-9838 Msa1346840:intron 35.0%
GATAGATTTATGAAGCCTGT+GGG - tig0009259:9820-9839 Msa1346840:intron 35.0%
! TCAAATTTAAGACTACCCAC+AGG + tig0009259:9838-9857 None:intergenic 35.0%
! AAGAAGATTTAGTTCGGGTT+CGG - tig0009259:9921-9940 Msa1346840:intron 35.0%
TCGACATAAATCCATCTTTC+CGG + tig0009259:9985-10004 None:intergenic 35.0%
CTCCAGAAGGATAGAAATTA+CGG - tig0009259:10044-10063 Msa1346840:intron 35.0%
ATCCGTAATTTCTATCCTTC+TGG + tig0009259:10049-10068 None:intergenic 35.0%
AATTACGGATCAGTTATCGA+AGG - tig0009259:10059-10078 Msa1346840:intron 35.0%
AGTTTCGTTTGGAAATTGAG+CGG - tig0009259:10115-10134 Msa1346840:intron 35.0%
TGGTAATTCGCAATTGTATC+CGG - tig0009259:10139-10158 Msa1346840:intron 35.0%
!!! ACACTGTCTGTTTTTGAAAC+TGG - tig0009259:10282-10301 Msa1346840:intron 35.0%
!!! CACTGTCTGTTTTTGAAACT+GGG - tig0009259:10283-10302 Msa1346840:intron 35.0%
! GCTTCAACTTTGGAAGAAAA+TGG - tig0009259:10405-10424 Msa1346840:intron 35.0%
! CCGAAGAAAACTTTTGTCTT+AGG - tig0009259:10562-10581 Msa1346840:CDS 35.0%
! AGAAAACTTTTGTCTTAGGC+GGG - tig0009259:10566-10585 Msa1346840:CDS 35.0%
!!! TCAATTTTGAGATGGCATCA+GGG + tig0009259:10671-10690 None:intergenic 35.0%
!!! TTCAATTTTGAGATGGCATC+AGG + tig0009259:10672-10691 None:intergenic 35.0%
GCAATTTCTCATTTCCATCA+AGG + tig0009259:10701-10720 None:intergenic 35.0%
ATCTGAGAATCTTCAACTGA+AGG - tig0009259:10782-10801 Msa1346840:intron 35.0%
CATGCTAGCTGATAAGAATA+AGG - tig0009259:10806-10825 Msa1346840:intron 35.0%
ACAGTGCTCAAGTTTCTAAT+GGG - tig0009259:11093-11112 Msa1346840:intron 35.0%
AATTATGATTGAAGGGCTAC+TGG - tig0009259:11145-11164 Msa1346840:intron 35.0%
ACTTACGTTGAAATCAACAG+TGG - tig0009259:11262-11281 Msa1346840:intron 35.0%
GAAATCAACAGTGGAAGAAA+AGG - tig0009259:11271-11290 Msa1346840:intron 35.0%
GGAACAAGAAAAGCAAAAGA+TGG - tig0009259:11325-11344 Msa1346840:intron 35.0%
TACATGAAGATCTCGAACAA+AGG - tig0009259:11501-11520 Msa1346840:intron 35.0%
ACATGAAGATCTCGAACAAA+GGG - tig0009259:11502-11521 Msa1346840:intron 35.0%
AGTGTATTGAGGCAAAAGAA+AGG - tig0009259:11600-11619 Msa1346840:intron 35.0%
GTGTATTGAGGCAAAAGAAA+GGG - tig0009259:11601-11620 Msa1346840:intron 35.0%
! TGATGGATGACGACATAAAA+TGG + tig0009259:11829-11848 None:intergenic 35.0%
! CTAACAGCCTGAAAATTTTG+TGG - tig0009259:12060-12079 Msa1346840:intron 35.0%
AGATGGTTCCATATATGACT+TGG + tig0009259:12189-12208 None:intergenic 35.0%
TATTTCTCAATCTTGTGGAG+AGG - tig0009259:12429-12448 Msa1346840:intron 35.0%
GGAACAAGTAAAAATTTGGG+GGG + tig0009259:12521-12540 None:intergenic 35.0%
GGGAACAAGTAAAAATTTGG+GGG + tig0009259:12522-12541 None:intergenic 35.0%
ATCAAGAGTCTACACAGAAT+CGG - tig0009259:12628-12647 Msa1346840:intron 35.0%
AATCGGACTATGGTTAAATC+TGG - tig0009259:12645-12664 Msa1346840:intron 35.0%
TGTTATAAGTGCCAAAAAGG+AGG - tig0009259:12747-12766 Msa1346840:intron 35.0%
! ATAATTTTTGCCGCATGTTG+TGG - tig0009259:13040-13059 Msa1346840:CDS 35.0%
TGGCCAGTGAATTAATCATA+TGG - tig0009259:13060-13079 Msa1346840:CDS 35.0%
! TCACCAAAATTTTACGGCAT+AGG + tig0009259:13199-13218 None:intergenic 35.0%
!! CGTAAAATTTTGGTGAACCA+AGG - tig0009259:13203-13222 Msa1346840:intron 35.0%
TGAAAGATCATAGGGTCAAA+AGG + tig0009259:13333-13352 None:intergenic 35.0%
! TTTTGACCCTATGATCTTTC+AGG - tig0009259:13332-13351 Msa1346840:intron 35.0%
GATCAACCTGAAAGATCATA+GGG + tig0009259:13341-13360 None:intergenic 35.0%
AGATCAACCTGAAAGATCAT+AGG + tig0009259:13342-13361 None:intergenic 35.0%
!!! CTTTCAGGTTGATCTTTTAG+GGG - tig0009259:13347-13366 Msa1346840:intron 35.0%
CAATATTGCAACATTACCCT+GGG - tig0009259:13433-13452 Msa1346840:intron 35.0%
AATATTGCAACATTACCCTG+GGG - tig0009259:13434-13453 Msa1346840:intron 35.0%
AACAAAATATTCTCACCCCA+GGG + tig0009259:13452-13471 None:intergenic 35.0%
AAACAAAATATTCTCACCCC+AGG + tig0009259:13453-13472 None:intergenic 35.0%
CATCATGGTGTGTGATATAA+AGG - tig0009259:13783-13802 Msa1346840:CDS 35.0%
CTCTACATTGCATAACAGAA+TGG - tig0009259:13814-13833 Msa1346840:CDS 35.0%
AAATGGTAAGAACTTCTGCA+TGG + tig0009259:14374-14393 None:intergenic 35.0%
AAAGATGGATGAGACCATAA+GGG - tig0009259:14428-14447 Msa1346840:CDS 35.0%
TAACGGAAAATATGCCCTTA+TGG + tig0009259:14445-14464 None:intergenic 35.0%
!! CCGGTTACTATTGTTAGTTT+TGG + tig0009259:14482-14501 None:intergenic 35.0%
TTTGCAGATTATCGAGATTC+TGG - tig0009259:14695-14714 Msa1346840:CDS 35.0%
CTTGTAAGAAGAGAATTGAC+TGG - tig0009259:14720-14739 Msa1346840:CDS 35.0%
! AAACTTGTTTAACCCATGAC+CGG - tig0009259:14753-14772 Msa1346840:CDS 35.0%
! ATCTGAAACTTTCCATGTTC+TGG - tig0009259:14804-14823 Msa1346840:CDS 35.0%
TCTCACACCTGATTAACTAT+TGG - tig0009259:14871-14890 Msa1346840:CDS 35.0%
ACCTGATTAACTATTGGATG+TGG - tig0009259:14877-14896 Msa1346840:CDS 35.0%
TCCACATCCAATAGTTAATC+AGG + tig0009259:14881-14900 None:intergenic 35.0%
AACTATTGGATGTGGAGAAT+CGG - tig0009259:14885-14904 Msa1346840:CDS 35.0%
!! AGGTATATGATAGAGCATTG+TGG - tig0009259:15247-15266 Msa1346840:CDS 35.0%
ATACAAAATCCCCCTGATTT+GGG + tig0009259:15583-15602 None:intergenic 35.0%
AATACAAAATCCCCCTGATT+TGG + tig0009259:15584-15603 None:intergenic 35.0%
TCTATTTGGAAGTTTAGGAG+GGG + tig0009259:15680-15699 None:intergenic 35.0%
GTCTATTTGGAAGTTTAGGA+GGG + tig0009259:15681-15700 None:intergenic 35.0%
AAGGATACCCTAGTAATGTA+AGG + tig0009259:15791-15810 None:intergenic 35.0%
!! CATTACTAGGGTATCCTTTT+TGG - tig0009259:15793-15812 Msa1346840:CDS 35.0%
CTTGAAAAGAGAACCCAAAA+AGG + tig0009259:15810-15829 None:intergenic 35.0%
GGTAATTTAACAGACAACAC+TGG + tig0009259:15880-15899 None:intergenic 35.0%
TACACACTCTTAGTAGAACA+AGG + tig0009259:15901-15920 None:intergenic 35.0%
!! AATCTTGTAATGGATACAGG+TGG - tig0009259:15949-15968 Msa1346840:intron 35.0%
CCCCTAAAACACATTATGTA+AGG - tig0009259:16040-16059 Msa1346840:intron 35.0%
TTTGTGTATGGCAAAAAGGA+AGG + tig0009259:16098-16117 None:intergenic 35.0%
AGCATTTGTGTATGGCAAAA+AGG + tig0009259:16102-16121 None:intergenic 35.0%
ATACTAGAGCCAAACAAACA+AGG + tig0009259:16147-16166 None:intergenic 35.0%
AAATAATTGTGATGCGGTGG+TGG + tig0009259:8990-9009 None:intergenic 40.0%
GTGAAATAATTGTGATGCGG+TGG + tig0009259:8993-9012 None:intergenic 40.0%
GTGTGAATAGTTGGGAAAAG+GGG + tig0009259:9017-9036 None:intergenic 40.0%
GGTGTGAATAGTTGGGAAAA+GGG + tig0009259:9018-9037 None:intergenic 40.0%
AGGTGTGAATAGTTGGGAAA+AGG + tig0009259:9019-9038 None:intergenic 40.0%
! ATTGGGAGGTGTGAATAGTT+GGG + tig0009259:9025-9044 None:intergenic 40.0%
! AATTGGGAGGTGTGAATAGT+TGG + tig0009259:9026-9045 None:intergenic 40.0%
TGGAAAGAGAGAATCTGGAA+CGG + tig0009259:9066-9085 None:intergenic 40.0%
! GCAGGTTGAAGGTTCAAAAA+TGG + tig0009259:9086-9105 None:intergenic 40.0%
TTTGAACCTTCAACCTGCAT+TGG - tig0009259:9088-9107 Msa1346840:three_prime_UTR 40.0%
TTATGTTGAAGCTCCAATGC+AGG + tig0009259:9104-9123 None:intergenic 40.0%
! GTGAATCTTGTTTAGGGAAG+TGG - tig0009259:9426-9445 Msa1346840:intron 40.0%
TAGGGAAGTGGAAATGATGA+AGG - tig0009259:9438-9457 Msa1346840:intron 40.0%
GAAGTGGAAATGATGAAGGA+GGG - tig0009259:9442-9461 Msa1346840:intron 40.0%
AAGTGGAAATGATGAAGGAG+GGG - tig0009259:9443-9462 Msa1346840:intron 40.0%
!! GAGGGGTTTGTTGTTATGAA+TGG - tig0009259:9460-9479 Msa1346840:intron 40.0%
!! GGGTTTGTTGTTATGAATGG+TGG - tig0009259:9463-9482 Msa1346840:intron 40.0%
! AAGGATGATGATGAGAGTCT+TGG - tig0009259:9511-9530 Msa1346840:intron 40.0%
TCTTGGTGAGCACATAATTG+AGG - tig0009259:9528-9547 Msa1346840:intron 40.0%
AATTGCGCAAAAAGAATCGG+AGG - tig0009259:9663-9682 Msa1346840:intron 40.0%
AAAAAGAATCGGAGGTCGTT+GGG - tig0009259:9671-9690 Msa1346840:intron 40.0%
CGGATGAAGCTAAAATGATG+TGG - tig0009259:9728-9747 Msa1346840:intron 40.0%
CGTTGTAATGAAACCCATGA+AGG - tig0009259:9760-9779 Msa1346840:intron 40.0%
TGTAATGAAACCCATGAAGG+TGG - tig0009259:9763-9782 Msa1346840:intron 40.0%
!!! GGTACACGTCGTTTTTTAGA+TGG - tig0009259:9784-9803 Msa1346840:intron 40.0%
! ATTTAGTTCGGGTTCGGATT+TGG - tig0009259:9927-9946 Msa1346840:intron 40.0%
CTATGGATTCTTTCTCCAGA+AGG - tig0009259:10031-10050 Msa1346840:intron 40.0%
AGGTAACAACACTTTCTGAG+TGG - tig0009259:10079-10098 Msa1346840:intron 40.0%
! GCTTATTTCTCATGGATCCT+TGG - tig0009259:10308-10327 Msa1346840:intron 40.0%
GCTTTCGACAGATCATTTGT+CGG - tig0009259:10383-10402 Msa1346840:intron 40.0%
!! TCATTTGTCGGCTTCAACTT+TGG - tig0009259:10395-10414 Msa1346840:intron 40.0%
TTGGAAGAAAATGGGAAGCA+CGG - tig0009259:10414-10433 Msa1346840:intron 40.0%
GATTAGCAAGCCTGATAGTT+TGG - tig0009259:10446-10465 Msa1346840:intron 40.0%
AAGCCTGATAGTTTGGATTC+TGG - tig0009259:10453-10472 Msa1346840:intron 40.0%
TCTCATGCACTTGAGATTCA+TGG + tig0009259:10539-10558 None:intergenic 40.0%
ACAATCTGTTCAGAAGCTTG+AGG - tig0009259:10908-10927 Msa1346840:intron 40.0%
AGAAGCTTGAGGATGATGTT+GGG - tig0009259:10919-10938 Msa1346840:intron 40.0%
GAAGACTTGCATCTCAAGTA+TGG - tig0009259:11026-11045 Msa1346840:intron 40.0%
! AGAAACTTGAGCACTGTCAA+CGG + tig0009259:11090-11109 None:intergenic 40.0%
GACAGTGCTCAAGTTTCTAA+TGG - tig0009259:11092-11111 Msa1346840:intron 40.0%
TAAACTGTCAAGCTGTTGAG+AGG + tig0009259:11357-11376 None:intergenic 40.0%
TGTGGAGAACAGTAAAGAGT+TGG - tig0009259:11409-11428 Msa1346840:intron 40.0%
AGATGCATTGGAGTGTATTG+AGG - tig0009259:11589-11608 Msa1346840:intron 40.0%
AAGGGAAACCAGGAAACAAA+TGG - tig0009259:11619-11638 Msa1346840:intron 40.0%
TTCAAAGGTAATGTCCTTGC+TGG + tig0009259:11879-11898 None:intergenic 40.0%
GGTCAGAACCAAGTCATATA+TGG - tig0009259:12178-12197 Msa1346840:intron 40.0%
TGCATTCAAGCCTGAAAAGA+TGG + tig0009259:12206-12225 None:intergenic 40.0%
TGCACTTAAAACCATGGGAT+TGG - tig0009259:12263-12282 Msa1346840:intron 40.0%
TATTCATCTGCATCTGCCTT+GGG + tig0009259:12480-12499 None:intergenic 40.0%
AGATGCAGATGAATAGGTGT+GGG - tig0009259:12485-12504 Msa1346840:intron 40.0%
!!! TACTGGCTTATCCTCCTTTT+TGG + tig0009259:12761-12780 None:intergenic 40.0%
TTCAAATGGGTCGAATTGTG+AGG - tig0009259:13087-13106 Msa1346840:intron 40.0%
CGAATTGTGAGGATACATCA+AGG - tig0009259:13098-13117 Msa1346840:intron 40.0%
GATCACGGTATCAGTATATC+AGG - tig0009259:13173-13192 Msa1346840:intron 40.0%
! AGGCCTATGCCGTAAAATTT+TGG - tig0009259:13193-13212 Msa1346840:intron 40.0%
! CAAGTTGGGTATTAAACCCT+TGG + tig0009259:13223-13242 None:intergenic 40.0%
CTCTTCTTAGACTCCTTGAA+AGG - tig0009259:13382-13401 Msa1346840:intron 40.0%
GTGCAACGTATATCCTTTCA+AGG + tig0009259:13398-13417 None:intergenic 40.0%
CCAGGGTAATGTTGCAATAT+TGG + tig0009259:13435-13454 None:intergenic 40.0%
CCAATATTGCAACATTACCC+TGG - tig0009259:13432-13451 Msa1346840:intron 40.0%
!! TACTCTTTGGGCTTTTTGGT+TGG + tig0009259:13641-13660 None:intergenic 40.0%
! TGTGTACTCTTTGGGCTTTT+TGG + tig0009259:13645-13664 None:intergenic 40.0%
TAATATAACCAACTGCGGTG+TGG - tig0009259:13844-13863 Msa1346840:CDS 40.0%
! AAAGTATCAGGGCAATTGAG+AGG + tig0009259:13950-13969 None:intergenic 40.0%
AATGGTAATTCGTCATCCCA+TGG - tig0009259:14128-14147 Msa1346840:CDS 40.0%
CATTTCCGTGTTCTTTCCAT+GGG + tig0009259:14147-14166 None:intergenic 40.0%
TCATTTCCGTGTTCTTTCCA+TGG + tig0009259:14148-14167 None:intergenic 40.0%
!! TGGCTTTGTAGAACTAGGAA+GGG - tig0009259:14211-14230 Msa1346840:CDS 40.0%
!! TGTACTGGCCGTATTTGTTT+TGG - tig0009259:14249-14268 Msa1346840:CDS 40.0%
AGAGACAATTCTTAGCCGAA+TGG + tig0009259:14320-14339 None:intergenic 40.0%
GAAAGATGGATGAGACCATA+AGG - tig0009259:14427-14446 Msa1346840:CDS 40.0%
TGGATACACACAAGCTGTAA+CGG + tig0009259:14462-14481 None:intergenic 40.0%
TTGCAACATAGGTTTGGAGA+GGG - tig0009259:14504-14523 Msa1346840:CDS 40.0%
! AACTTGTTTAACCCATGACC+GGG - tig0009259:14754-14773 Msa1346840:CDS 40.0%
GGGTTTATGAATCCAGAACA+TGG + tig0009259:14819-14838 None:intergenic 40.0%
TGGAGAATCGGAAGTAACTT+AGG - tig0009259:14897-14916 Msa1346840:CDS 40.0%
GGAGAATCGGAAGTAACTTA+GGG - tig0009259:14898-14917 Msa1346840:CDS 40.0%
GGAAGACAAATCAGGGAAAA+AGG - tig0009259:15105-15124 Msa1346840:CDS 40.0%
! GCTTGGTTGTTGTTGTTGAA+GGG - tig0009259:15312-15331 Msa1346840:CDS 40.0%
TAGAAAGTAATTGGACCCTG+AGG - tig0009259:15348-15367 Msa1346840:CDS 40.0%
ACTCTCTCAAACAAGGTGAA+AGG + tig0009259:15417-15436 None:intergenic 40.0%
! TACAAAATCCCCCTGATTTG+GGG + tig0009259:15582-15601 None:intergenic 40.0%
AAAAGGATGGAGAAAGTGGA+AGG + tig0009259:15640-15659 None:intergenic 40.0%
GGTCTATTTGGAAGTTTAGG+AGG + tig0009259:15682-15701 None:intergenic 40.0%
GCGATGACATGGTTCATAAA+GGG + tig0009259:15763-15782 None:intergenic 40.0%
TGCGATGACATGGTTCATAA+AGG + tig0009259:15764-15783 None:intergenic 40.0%
! GCAGTAGCCTTACATTACTA+GGG - tig0009259:15781-15800 Msa1346840:CDS 40.0%
!! GCTAGTGATGATTTGTTTGC+TGG - tig0009259:16006-16025 Msa1346840:intron 40.0%
! AAGAGAGAATCTGGAACGGT+GGG + tig0009259:9062-9081 None:intergenic 45.0%
! AAAGAGAGAATCTGGAACGG+TGG + tig0009259:9063-9082 None:intergenic 45.0%
GGAAGTGGAAATGATGAAGG+AGG - tig0009259:9441-9460 Msa1346840:intron 45.0%
GGGTATGGTTAATGCTGTTG+AGG - tig0009259:9624-9643 Msa1346840:intron 45.0%
GGTTAATGCTGTTGAGGAAC+AGG - tig0009259:9630-9649 Msa1346840:intron 45.0%
TAATGCTGTTGAGGAACAGG+CGG - tig0009259:9633-9652 Msa1346840:intron 45.0%
CAAAAAGAATCGGAGGTCGT+TGG - tig0009259:9670-9689 Msa1346840:intron 45.0%
GCAGTTGAGCCAACTCAAAA+AGG - tig0009259:9867-9886 Msa1346840:intron 45.0%
!! GGTTCGGATTTGGTTGGTTT+AGG - tig0009259:9937-9956 Msa1346840:intron 45.0%
!! TCGGATTTGGTTGGTTTAGG+TGG - tig0009259:9940-9959 Msa1346840:intron 45.0%
TGGTTTAGGTGGTATTCTGC+AGG - tig0009259:9951-9970 Msa1346840:intron 45.0%
TATTCTGCAGGAGAATGTGC+CGG - tig0009259:9963-9982 Msa1346840:intron 45.0%
AACAACACTTTCTGAGTGGC+AGG - tig0009259:10083-10102 Msa1346840:intron 45.0%
TCGTTTGGAAATTGAGCGGA+TGG - tig0009259:10119-10138 Msa1346840:intron 45.0%
AGAGATCTCAAGTTTGCGTC+AGG - tig0009259:10239-10258 Msa1346840:intron 45.0%
CTCAAGTTTGCGTCAGGATT+TGG - tig0009259:10245-10264 Msa1346840:intron 45.0%
! ACTGGGACGCTTATTTCTCA+TGG - tig0009259:10300-10319 Msa1346840:intron 45.0%
CCAATCATCAGTATGCTCCA+AGG + tig0009259:10328-10347 None:intergenic 45.0%
CCTTGGAGCATACTGATGAT+TGG - tig0009259:10325-10344 Msa1346840:intron 45.0%
TCGAAAGCTTCAAGTGGACA+TGG + tig0009259:10371-10390 None:intergenic 45.0%
GATCTGTCGAAAGCTTCAAG+TGG + tig0009259:10377-10396 None:intergenic 45.0%
GAGCCAGAATCCAAACTATC+AGG + tig0009259:10459-10478 None:intergenic 45.0%
!! TTTGGATTCTGGCTCTCTGA+AGG - tig0009259:10464-10483 Msa1346840:intron 45.0%
TTCTCAGCTTTCTGCTGCTA+TGG - tig0009259:10845-10864 Msa1346840:intron 45.0%
TCTCAGCTTTCTGCTGCTAT+GGG - tig0009259:10846-10865 Msa1346840:intron 45.0%
CAGAAGCTTGAGGATGATGT+TGG - tig0009259:10918-10937 Msa1346840:intron 45.0%
GAAGCTTGAGGATGATGTTG+GGG - tig0009259:10920-10939 Msa1346840:intron 45.0%
! TGCTCAAGTTTCTAATGGGC+TGG - tig0009259:11097-11116 Msa1346840:intron 45.0%
!! TTTGTTGTTCTCGGCAGCTT+TGG + tig0009259:11228-11247 None:intergenic 45.0%
ACAAGGGGTAACAGATGCTT+TGG - tig0009259:11304-11323 Msa1346840:intron 45.0%
AAACCTAGTTGCAGCAGCAA+AGG - tig0009259:11445-11464 Msa1346840:intron 45.0%
TTTCCTTTGCTGCTGCAACT+AGG + tig0009259:11451-11470 None:intergenic 45.0%
AGGCAAAAGAAAGGGAAACC+AGG - tig0009259:11609-11628 Msa1346840:intron 45.0%
! GGTTGACTCCATTTGTTTCC+TGG + tig0009259:11630-11649 None:intergenic 45.0%
AGCCAGTGCACTTAAAACCA+TGG - tig0009259:12257-12276 Msa1346840:intron 45.0%
GCCAGTGCACTTAAAACCAT+GGG - tig0009259:12258-12277 Msa1346840:intron 45.0%
!!! TCCCATGGTTTTAAGTGCAC+TGG + tig0009259:12262-12281 None:intergenic 45.0%
TTGCTTGTACACCAATCCCA+TGG + tig0009259:12277-12296 None:intergenic 45.0%
CTATTCATCTGCATCTGCCT+TGG + tig0009259:12481-12500 None:intergenic 45.0%
CAAGGCAGATGCAGATGAAT+AGG - tig0009259:12479-12498 Msa1346840:intron 45.0%
CAGATGCAGATGAATAGGTG+TGG - tig0009259:12484-12503 Msa1346840:intron 45.0%
GATGCAGATGAATAGGTGTG+GGG - tig0009259:12486-12505 Msa1346840:intron 45.0%
ATGCAGATGAATAGGTGTGG+GGG - tig0009259:12487-12506 Msa1346840:intron 45.0%
TGTAGACTCTTGATCGCTGA+GGG + tig0009259:12622-12641 None:intergenic 45.0%
GTCTACACAGAATCGGACTA+TGG - tig0009259:12635-12654 Msa1346840:intron 45.0%
CGGACTATGGTTAAATCTGG+TGG - tig0009259:12648-12667 Msa1346840:intron 45.0%
AATTCACTGGCCACAACATG+CGG + tig0009259:13053-13072 None:intergenic 45.0%
CTCATTTACTTCCCTGAGTC+CGG + tig0009259:13730-13749 None:intergenic 45.0%
GGTGTGTGATATAAAGGGTG+AGG - tig0009259:13789-13808 Msa1346840:CDS 45.0%
TATCAGTGACCCTAAGCTGT+TGG + tig0009259:14010-14029 None:intergenic 45.0%
GTCATCCCATGGAAAGAACA+CGG - tig0009259:14139-14158 Msa1346840:CDS 45.0%
!! ACGTGTGGCTTTGTAGAACT+AGG - tig0009259:14206-14225 Msa1346840:CDS 45.0%
!! GTGGCTTTGTAGAACTAGGA+AGG - tig0009259:14210-14229 Msa1346840:CDS 45.0%
CAATTCTTAGCCGAATGGCA+GGG + tig0009259:14315-14334 None:intergenic 45.0%
ACAATTCTTAGCCGAATGGC+AGG + tig0009259:14316-14335 None:intergenic 45.0%
!! AGTAACCGGTGTTGCAACAT+AGG - tig0009259:14493-14512 Msa1346840:CDS 45.0%
CCAAACCTATGTTGCAACAC+CGG + tig0009259:14501-14520 None:intergenic 45.0%
GTTGCAACATAGGTTTGGAG+AGG - tig0009259:14503-14522 Msa1346840:CDS 45.0%
AATTAGGAGGTGGCGACATT+TGG - tig0009259:14542-14561 Msa1346840:CDS 45.0%
! AGAGTGTCTGTCAACTTACC+CGG + tig0009259:14775-14794 None:intergenic 45.0%
!! TAACTTAGGGAGCACTGTCA+TGG - tig0009259:14911-14930 Msa1346840:CDS 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + tig0009259:15296-15315 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + tig0009259:15297-15316 None:intergenic 45.0%
! GGCTTGGTTGTTGTTGTTGA+AGG - tig0009259:15311-15330 Msa1346840:CDS 45.0%
! AGTGCATAGGAGGAGGATTT+TGG + tig0009259:15549-15568 None:intergenic 45.0%
! GAACCAAGAAAGTGCATAGG+AGG + tig0009259:15559-15578 None:intergenic 45.0%
TTTCTTGGTTCCCCCAAATC+AGG - tig0009259:15568-15587 Msa1346840:CDS 45.0%
TTCTTGGTTCCCCCAAATCA+GGG - tig0009259:15569-15588 Msa1346840:CDS 45.0%
!! ACAAAATCCCCCTGATTTGG+GGG + tig0009259:15581-15600 None:intergenic 45.0%
GAAGGAATAGAGGACTTAGG+TGG + tig0009259:15622-15641 None:intergenic 45.0%
GTGGAAGGAATAGAGGACTT+AGG + tig0009259:15625-15644 None:intergenic 45.0%
GGAGAAAGTGGAAGGAATAG+AGG + tig0009259:15632-15651 None:intergenic 45.0%
GGAGAAAAGGATGGAGAAAG+TGG + tig0009259:15644-15663 None:intergenic 45.0%
! CGCAGTAGCCTTACATTACT+AGG - tig0009259:15780-15799 Msa1346840:CDS 45.0%
!! AGGAGACAGCCTTGTTTGTT+TGG - tig0009259:16135-16154 Msa1346840:five_prime_UTR 45.0%
!! ATGCGGTGGTGGCGTTTTTA+GGG + tig0009259:8979-8998 None:intergenic 50.0%
! GAAGCTCCAATGCAGGTTGA+AGG + tig0009259:9097-9116 None:intergenic 50.0%
ACGACGTGTACCACCTTCAT+GGG + tig0009259:9776-9795 None:intergenic 50.0%
AACGACGTGTACCACCTTCA+TGG + tig0009259:9777-9796 None:intergenic 50.0%
! AGTTCGGGTTCGGATTTGGT+TGG - tig0009259:9931-9950 Msa1346840:intron 50.0%
AGGAGAATGTGCCGGAAAGA+TGG - tig0009259:9971-9990 Msa1346840:intron 50.0%
AACACTTTCTGAGTGGCAGG+AGG - tig0009259:10086-10105 Msa1346840:intron 50.0%
TTGTATCCGGAGTTTGCAGC+AGG - tig0009259:10152-10171 Msa1346840:intron 50.0%
CAATCTCCTGCTGCAAACTC+CGG + tig0009259:10161-10180 None:intergenic 50.0%
GTCACAGCAACAACTGACTG+AGG - tig0009259:10875-10894 Msa1346840:intron 50.0%
!! GTGCACTGGCTTTGTTCTTG+AGG + tig0009259:12248-12267 None:intergenic 50.0%
TCTTGCAAAGGCTGAAGCAG+AGG - tig0009259:12320-12339 Msa1346840:intron 50.0%
CTTGGGTCACATGAGCACAA+GGG + tig0009259:12463-12482 None:intergenic 50.0%
TGCAGATGAATAGGTGTGGG+GGG - tig0009259:12488-12507 Msa1346840:intron 50.0%
GTGTAGACTCTTGATCGCTG+AGG + tig0009259:12623-12642 None:intergenic 50.0%
!! GGTTGATCTTTTAGGGGACG+AGG - tig0009259:13353-13372 Msa1346840:intron 50.0%
TTTACTTCCCTGAGTCCGGA+GGG + tig0009259:13726-13745 None:intergenic 50.0%
ATTTACTTCCCTGAGTCCGG+AGG + tig0009259:13727-13746 None:intergenic 50.0%
!! CCGGTGTTGCAACATAGGTT+TGG - tig0009259:14498-14517 Msa1346840:CDS 50.0%
CTGTCAACTTACCCGGTCAT+GGG + tig0009259:14768-14787 None:intergenic 50.0%
TCTGTCAACTTACCCGGTCA+TGG + tig0009259:14769-14788 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG + tig0009259:15292-15311 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + tig0009259:15298-15317 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - tig0009259:15295-15314 Msa1346840:CDS 50.0%
AACTCCTAGACGGAACCTCA+GGG + tig0009259:15366-15385 None:intergenic 50.0%
AAACTCCTAGACGGAACCTC+AGG + tig0009259:15367-15386 None:intergenic 50.0%
TGAGGTTCCGTCTAGGAGTT+TGG - tig0009259:15366-15385 Msa1346840:CDS 50.0%
TTCCGTCTAGGAGTTTGGAG+AGG - tig0009259:15371-15390 Msa1346840:CDS 50.0%
TCCGTCTAGGAGTTTGGAGA+GGG - tig0009259:15372-15391 Msa1346840:CDS 50.0%
! GCATAGGAGGAGGATTTTGG+AGG + tig0009259:15546-15565 None:intergenic 50.0%
! CCAAGAAAGTGCATAGGAGG+AGG + tig0009259:15556-15575 None:intergenic 50.0%
CCTCCTCCTATGCACTTTCT+TGG - tig0009259:15553-15572 Msa1346840:CDS 50.0%
! GGGGAACCAAGAAAGTGCAT+AGG + tig0009259:15562-15581 None:intergenic 50.0%
TCTTGGTTCCCCCAAATCAG+GGG - tig0009259:15570-15589 Msa1346840:CDS 50.0%
!! GTGGGCTTTGGAGAAAAGGA+TGG + tig0009259:15653-15672 None:intergenic 50.0%
!! AGAGGTGGGCTTTGGAGAAA+AGG + tig0009259:15657-15676 None:intergenic 50.0%
AAGTTTAGGAGGGGAGAGGT+GGG + tig0009259:15671-15690 None:intergenic 50.0%
TTGGAAGTTTAGGAGGGGAG+AGG + tig0009259:15675-15694 None:intergenic 50.0%
GTAAGGCTACTGCGATGACA+TGG + tig0009259:15774-15793 None:intergenic 50.0%
!! GATGCGGTGGTGGCGTTTTT+AGG + tig0009259:8980-8999 None:intergenic 55.0%
GGAGGAGCAGGAGTTTCGTT+TGG - tig0009259:10104-10123 Msa1346840:intron 55.0%
CCTTGGGTCACATGAGCACA+AGG + tig0009259:12464-12483 None:intergenic 55.0%
CCTTGTGCTCATGTGACCCA+AGG - tig0009259:12461-12480 Msa1346840:intron 55.0%
TTACTTCCCTGAGTCCGGAG+GGG + tig0009259:13725-13744 None:intergenic 55.0%
AATGGCAGGGTTGAGCTGGT+AGG + tig0009259:14302-14321 None:intergenic 55.0%
ACCAGCTCAACCCTGCCATT+CGG - tig0009259:14302-14321 Msa1346840:CDS 55.0%
TAGGAGGTGGCGACATTTGG+CGG - tig0009259:14545-14564 Msa1346840:CDS 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + tig0009259:15284-15303 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - tig0009259:15283-15302 Msa1346840:CDS 55.0%
TGTAGCCGACCCCACTTAGT+GGG - tig0009259:15284-15303 Msa1346840:CDS 55.0%
CGACCCCACTTAGTGGGATA+AGG - tig0009259:15290-15309 Msa1346840:CDS 55.0%
CCCCTCTCCAAACTCCTAGA+CGG + tig0009259:15376-15395 None:intergenic 55.0%
CCGTCTAGGAGTTTGGAGAG+GGG - tig0009259:15373-15392 Msa1346840:CDS 55.0%
CGTCTAGGAGTTTGGAGAGG+GGG - tig0009259:15374-15393 Msa1346840:CDS 55.0%
GTCTAGGAGTTTGGAGAGGG+GGG - tig0009259:15375-15394 Msa1346840:CDS 55.0%
TCTAGGAGTTTGGAGAGGGG+GGG - tig0009259:15376-15395 Msa1346840:CDS 55.0%
CTTGGTTCCCCCAAATCAGG+GGG - tig0009259:15571-15590 Msa1346840:CDS 55.0%
GAAGTTTAGGAGGGGAGAGG+TGG + tig0009259:15672-15691 None:intergenic 55.0%
TTCTGAGTGGCAGGAGGAGC+AGG - tig0009259:10092-10111 Msa1346840:intron 60.0%
TGGGAATCTTGACCCCCCTC+CGG - tig0009259:13708-13727 Msa1346840:CDS 60.0%
TACTTCCCTGAGTCCGGAGG+GGG + tig0009259:13724-13743 None:intergenic 60.0%
CCTGATTGCCACACCGCAGT+TGG + tig0009259:13855-13874 None:intergenic 60.0%
CCAACTGCGGTGTGGCAATC+AGG - tig0009259:13852-13871 Msa1346840:CDS 60.0%
TGGACCCTGAGGTTCCGTCT+AGG - tig0009259:15359-15378 Msa1346840:CDS 60.0%
CTAGGAGTTTGGAGAGGGGG+GGG - tig0009259:15377-15396 Msa1346840:CDS 60.0%
TAGGAGTTTGGAGAGGGGGG+GGG - tig0009259:15378-15397 Msa1346840:CDS 60.0%
TTGACCCCCCTCCGGACTCA+GGG - tig0009259:13716-13735 Msa1346840:CDS 65.0%
ACTTCCCTGAGTCCGGAGGG+GGG + tig0009259:13723-13742 None:intergenic 65.0%
GCAGGGTTGAGCTGGTAGGC+TGG + tig0009259:14298-14317 None:intergenic 65.0%
GCCGAATGGCAGGGTTGAGC+TGG + tig0009259:14306-14325 None:intergenic 65.0%
! AGGAGGGGAGAGGTGGGCTT+TGG + tig0009259:15665-15684 None:intergenic 65.0%
CTTGACCCCCCTCCGGACTC+AGG - tig0009259:13715-13734 Msa1346840:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0009259 gene 8927 16387 8927 ID=Msa1346840;Name=Msa1346840
tig0009259 mRNA 8927 16387 8927 ID=Msa1346840-mRNA-1;Parent=Msa1346840;Name=Msa1346840-mRNA-1;_AED=0.03;_eAED=0.03;_QI=333|1|1|1|0.6|0.33|6|431|857
tig0009259 exon 8927 9346 8927 ID=Msa1346840-mRNA-1:exon:5703;Parent=Msa1346840-mRNA-1
tig0009259 exon 10539 10612 10539 ID=Msa1346840-mRNA-1:exon:5702;Parent=Msa1346840-mRNA-1
tig0009259 exon 11859 11960 11859 ID=Msa1346840-mRNA-1:exon:5701;Parent=Msa1346840-mRNA-1
tig0009259 exon 12973 13099 12973 ID=Msa1346840-mRNA-1:exon:5700;Parent=Msa1346840-mRNA-1
tig0009259 exon 13582 15926 13582 ID=Msa1346840-mRNA-1:exon:5699;Parent=Msa1346840-mRNA-1
tig0009259 exon 16118 16387 16118 ID=Msa1346840-mRNA-1:exon:5698;Parent=Msa1346840-mRNA-1
tig0009259 five_prime_UTR 16118 16387 16118 ID=Msa1346840-mRNA-1:five_prime_utr;Parent=Msa1346840-mRNA-1
tig0009259 five_prime_UTR 15864 15926 15864 ID=Msa1346840-mRNA-1:five_prime_utr;Parent=Msa1346840-mRNA-1
tig0009259 CDS 13582 15863 13582 ID=Msa1346840-mRNA-1:cds;Parent=Msa1346840-mRNA-1
tig0009259 CDS 12973 13099 12973 ID=Msa1346840-mRNA-1:cds;Parent=Msa1346840-mRNA-1
tig0009259 CDS 11859 11960 11859 ID=Msa1346840-mRNA-1:cds;Parent=Msa1346840-mRNA-1
tig0009259 CDS 10550 10612 10550 ID=Msa1346840-mRNA-1:cds;Parent=Msa1346840-mRNA-1
tig0009259 three_prime_UTR 10539 10549 10539 ID=Msa1346840-mRNA-1:three_prime_utr;Parent=Msa1346840-mRNA-1
tig0009259 three_prime_UTR 8927 9346 8927 ID=Msa1346840-mRNA-1:three_prime_utr;Parent=Msa1346840-mRNA-1
Gene Sequence

>Msa1346840

ATGATGAAGGAGGGGTTTGTTGTTATGAATGGTGGTGAAAAGGTTTTTGAGAATGGTGTTAAGGATGATGATGAGAGTCTTGGTGAGCACATAATTGAGGAAATGGAGTCATTTTTTGATGATATCGATGAACGGTTGATTATTTCTAGGATGGTGAGTGATTCTGTTATAAAGGGTATGGTTAATGCTGTTGAGGAACAGGCGGCTGAGAGAATTGCGCAAAAAGAATCGGAGGTCGTTGGGTTGAAGAAAAAGCTAAGTAGTTTATGTGTTGGTTCGGATGAAGCTAAAATGATGTGGTCTTCGGTGCGTTGTAATGAAACCCATGAAGGTGGTACACGTCGTTTTTTAGATGGTGTTATGGAGAAAGATAGATTTATGAAGCCTGTGGGTAGTCTTAAATTTGAGATACATGAGCAGTTGAGCCAACTCAAAAAGGAAATAAATAAAATTAGAGGACTTAGTTCAACAAGAAGATTTAGTTCGGGTTCGGATTTGGTTGGTTTAGGTGGTATTCTGCAGGAGAATGTGCCGGAAAGATGGATTTATGTCGATAAAGCTTTTGAAAGTCTGAAAGATACTATGGATTCTTTCTCCAGAAGGATAGAAATTACGGATCAGTTATCGAAGGTAACAACACTTTCTGAGTGGCAGGAGGAGCAGGAGTTTCGTTTGGAAATTGAGCGGATGGTAATTCGCAATTGTATCCGGAGTTTGCAGCAGGAGATTGAACGAAAATTATGTGAAGTTTGTGAATCTGAAAGTAGAAATAGTTTTAACCAATATAAAGAGATCTCAAGTTTGCGTCAGGATTTGGATTCAATTTTTAGAACACTGTCTGTTTTTGAAACTGGGACGCTTATTTCTCATGGATCCTTGGAGCATACTGATGATTGGTGTCATAATAAGAGGGCAGACCATGTCCACTTGAAGCTTTCGACAGATCATTTGTCGGCTTCAACTTTGGAAGAAAATGGGAAGCACGGCGATTCAAAGATTAGCAAGCCTGATAGTTTGGATTCTGGCTCTCTGAAGGACATGTCTAAAGATGATTTGATTACTTATATAACTAAGATGAGAAGAAACCATGAATCTCAAGTGCATGAGAAGACCGAAGAAAACTTTTGTCTTAGGCGGGAACTATTGAATCTGAAAGAAAGAGGTTCTTCCTTTTCATTGAAGAAAGACAAGGACTTTGATTTGTTGAAGAAAAAAATCCCTGATGCCATCTCAAAATTGAATGAAGTCCTTGATGGAAATGAGAAATTGCGTCAATTCAGTGAGAACATTGAATCTCTTTGCAGTTTCAAAGATAGATTGGATTTCTTACAATCTGAGAATCTTCAACTGAAGGACATGCTAGCTGATAAGAATAAGGAAATTAAGAGTCTATCTTCTCAGCTTTCTGCTGCTATGGGAAAATTGTCACAGCAACAACTGACTGAGGAAAATTTGTTACAATCTGTTCAGAAGCTTGAGGATGATGTTGGGGATGCACATGTTGAAGCTTCAGTTATTCAAGACGTGTATAAATGTCTCTTTAAAGATATGGAAAGTGAATGTAGATTCATTACTGAAGACTTGCATCTCAAGTATGGTTTTATGCAAGAAATGTATGAAGCAATGTTGAAAGATACCGTTGACAGTGCTCAAGTTTCTAATGGGCTGGAAATAGAAGAAGCAAATATCGAGTCAATTATGATTGAAGGGCTACTGGATATTAATCAAATTATATTCAAAGGAGCTTTGGTAGATGCAGACGAAGCATTAAAATCCAAAGCTGCCGAGAACAACAAACTAAAATATGAAATACTTACGTTGAAATCAACAGTGGAAGAAAAGGAGAATTTATTACAAGGGGTAACAGATGCTTTGGAACAAGAAAAGCAAAAGATGGAATTGGCCTCTCAACAGCTTGACAGTTTAAGAACTGAGACAGATTGTCAACAAAATTGGATTGTGGAGAACAGTAAAGAGTTGGATGTTACTAAGCGAAACCTAGTTGCAGCAGCAAAGGAAATTGAAGAATACAAGGAGCAAATGCAGAAGTTACATGAAGATCTCGAACAAAGGGTGAATGAGCTTAGAGAAGTTGATAAAGAAAGAAGAGAGCTTTGTGCTGTTACAAAAAATCATCAAGATGCATTGGAGTGTATTGAGGCAAAAGAAAGGGAAACCAGGAAACAAATGGAGTCAACCATTAATCTCATCCATAAATTGTTGACAATGGTTAACGATGTAGAAGCTAGTGTAAATGAAGATGTTTCAAGAAATTGTATGAGGCTTGAATGCATGAGTTCTGAGTTCTCTTTCCTCAAGAACAAAGCCAGTGCACTTAAAACCATGGGATTGGTGTACAAGCAAAAGTTTGAAACAAAAAGTTCTGATCTTGCAAAGGCTGAAGCAGAGGTTGATCTTTTAGGGGACGAGGTAGATACTCTTCTTAGACTCCTTGAAAGGATATACGTTGCACTTGACCATTATTCACCAATATTGCAACATTACCCTGGGATTATCGAGATTCTGGAGCTTGTAAGAAGAGAATTGACTGGAGAGTCTAGAAAACTTGTTTAA

Protein sequence

>Msa1346840

MMKEGFVVMNGGEKVFENGVKDDDESLGEHIIEEMESFFDDIDERLIISRMVSDSVIKGMVNAVEEQAAERIAQKESEVVGLKKKLSSLCVGSDEAKMMWSSVRCNETHEGGTRRFLDGVMEKDRFMKPVGSLKFEIHEQLSQLKKEINKIRGLSSTRRFSSGSDLVGLGGILQENVPERWIYVDKAFESLKDTMDSFSRRIEITDQLSKVTTLSEWQEEQEFRLEIERMVIRNCIRSLQQEIERKLCEVCESESRNSFNQYKEISSLRQDLDSIFRTLSVFETGTLISHGSLEHTDDWCHNKRADHVHLKLSTDHLSASTLEENGKHGDSKISKPDSLDSGSLKDMSKDDLITYITKMRRNHESQVHEKTEENFCLRRELLNLKERGSSFSLKKDKDFDLLKKKIPDAISKLNEVLDGNEKLRQFSENIESLCSFKDRLDFLQSENLQLKDMLADKNKEIKSLSSQLSAAMGKLSQQQLTEENLLQSVQKLEDDVGDAHVEASVIQDVYKCLFKDMESECRFITEDLHLKYGFMQEMYEAMLKDTVDSAQVSNGLEIEEANIESIMIEGLLDINQIIFKGALVDADEALKSKAAENNKLKYEILTLKSTVEEKENLLQGVTDALEQEKQKMELASQQLDSLRTETDCQQNWIVENSKELDVTKRNLVAAAKEIEEYKEQMQKLHEDLEQRVNELREVDKERRELCAVTKNHQDALECIEAKERETRKQMESTINLIHKLLTMVNDVEASVNEDVSRNCMRLECMSSEFSFLKNKASALKTMGLVYKQKFETKSSDLAKAEAEVDLLGDEVDTLLRLLERIYVALDHYSPILQHYPGIIEILELVRRELTGESRKLV*