AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0547580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0547580 MtrunA17_Chr4g0017901 93.239 710 25 4 1 690 1 707 0.0 1362
Msa0547580 MtrunA17_Chr1g0188421 48.644 553 258 10 137 673 3 545 8.67e-174 508
Msa0547580 MtrunA17_Chr5g0434341 28.333 660 334 18 80 652 98 705 5.75e-79 266
Msa0547580 MtrunA17_Chr5g0417171 30.342 468 264 15 233 654 1 452 2.40e-52 187
Msa0547580 MtrunA17_Chr1g0188411 49.107 112 50 2 1 105 2 113 6.65e-30 114
Msa0547580 MtrunA17_Chr5g0417181 50.877 57 27 1 166 222 8 63 3.47e-13 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0547580 AT1G33420.1 50.771 713 285 23 2 676 3 687 0.0 665
Msa0547580 AT1G33420.2 50.167 598 245 17 105 676 12 582 0.0 559
Msa0547580 AT5G22260.1 29.605 608 361 15 81 648 81 661 9.29e-81 270
Msa0547580 AT1G66170.1 28.169 639 340 18 75 648 69 653 1.04e-74 255
Msa0547580 AT2G01810.1 30.943 265 137 6 74 328 72 300 1.70e-31 131
Msa0547580 AT2G01810.1 27.597 308 178 10 364 648 397 682 3.10e-27 118
Msa0547580 AT2G07714.1 33.898 118 69 2 207 315 1 118 2.13e-18 84.3
Msa0547580 AT1G32810.2 41.270 63 34 1 600 662 22 81 4.99e-11 66.6

Find 289 sgRNAs with CRISPR-Local

Find 786 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAATTCACTTGAATTTAT+TGG 0.105268 4_1:+40887190 None:intergenic
CTTACAGTCAAGAAGCTTTC+TGG 0.134184 4_1:+40894492 None:intergenic
GGTAATTGGGGTTATGAATT+TGG 0.134330 4_1:-40895268 Msa0547580:CDS
GATCTGATATTATGGGTTTC+TGG 0.138269 4_1:-40895493 Msa0547580:CDS
TTATTGGATTTGTTTAAATT+TGG 0.149243 4_1:+40887206 None:intergenic
CGCAACTCCTTAAAATTATT+TGG 0.155540 4_1:-40887868 Msa0547580:three_prime_UTR
TTCAACAACCATTGAGAATA+TGG 0.160436 4_1:+40888024 None:intergenic
GAGAAGAATGCTTAGCTTAT+TGG 0.163834 4_1:-40886980 Msa0547580:three_prime_UTR
GGTCACTTGCTTACTCTTAA+TGG 0.175979 4_1:-40895545 Msa0547580:CDS
GTTACCTTGCTTCAGATAAT+TGG 0.198863 4_1:+40895772 None:intergenic
GGCATTCATGGTATGGTAAT+TGG 0.203027 4_1:-40895282 Msa0547580:CDS
ATGGATTTGTCCAAGAAATT+TGG 0.204374 4_1:-40895340 Msa0547580:CDS
TCATTTCTTCTTACTTTATC+AGG 0.213502 4_1:-40888212 Msa0547580:three_prime_UTR
TCTCTCCGGATCTGATATTA+TGG 0.225259 4_1:-40895501 Msa0547580:CDS
TCAACCCCTCTCTTTATTCT+AGG 0.242517 4_1:+40888983 None:intergenic
CCTGTAATTTATTATGTTCA+TGG 0.246154 4_1:-40894988 Msa0547580:CDS
ATTATTTGGCAGAAATCTTT+AGG 0.248637 4_1:-40887854 Msa0547580:three_prime_UTR
CCACAGTGGCATCAATAAAT+TGG 0.249246 4_1:-40888444 Msa0547580:three_prime_UTR
TATTGGATTGAATGAAATTC+AGG 0.249299 4_1:-40886963 Msa0547580:three_prime_UTR
CACCCATTTGGCCTCATTAC+AGG 0.263526 4_1:+40894904 None:intergenic
CTTCTGCCGCCGTGCCGTTC+CGG 0.264413 4_1:-40896813 Msa0547580:CDS
ATCAGAAATCACTTGCTCTT+TGG 0.265036 4_1:+40894603 None:intergenic
AATATAGACCAAAGATTAAT+AGG 0.265549 4_1:-40894534 Msa0547580:CDS
ATACAAAATCGGTTATTCTT+TGG 0.266874 4_1:-40886869 Msa0547580:three_prime_UTR
TAAGCTAATATTATAGATTT+CGG 0.277037 4_1:+40887698 None:intergenic
AAATACTCAAGCTCTGTTCT+TGG 0.279504 4_1:-40893616 Msa0547580:three_prime_UTR
GGTGATGGGTGGTCTTCTTT+AGG 0.279988 4_1:+40894379 None:intergenic
TTGAACCAATTCCAACAAAA+AGG 0.282288 4_1:+40895066 None:intergenic
TGATCTTGTTATGTTGAATT+TGG 0.289351 4_1:+40887823 None:intergenic
TTTAGCAGTCTCTGCACTCC+TGG 0.291770 4_1:+40895030 None:intergenic
GTGACAAGGCAAACTCTTAA+AGG 0.292184 4_1:-40894884 Msa0547580:CDS
GTAATTGGGGTTATGAATTT+GGG 0.295494 4_1:-40895267 Msa0547580:CDS
TTGATACATTTAACAGATCT+AGG 0.307630 4_1:+40887091 None:intergenic
TTTGTAGCCGTGAAACTTCT+AGG 0.308688 4_1:-40894256 Msa0547580:CDS
AGCGATATCACTTCATAATA+AGG 0.310055 4_1:-40895854 Msa0547580:CDS
GCATTCATGGTATGGTAATT+GGG 0.312049 4_1:-40895281 Msa0547580:CDS
TACTAGTTTATAGATATATT+AGG 0.312699 4_1:+40887248 None:intergenic
CTCTCCGGATCTGATATTAT+GGG 0.313811 4_1:-40895500 Msa0547580:CDS
ATAATCCAGTCCAAATTTCT+TGG 0.316954 4_1:+40895330 None:intergenic
GACTATTGCGATTGTGATCT+AGG 0.317183 4_1:+40887655 None:intergenic
CATCTACACATTCGGGATAT+TGG 0.322337 4_1:+40887409 None:intergenic
GTTAGACTGTTACAGGAATT+AGG 0.323072 4_1:-40888616 Msa0547580:three_prime_UTR
GGACCGAGCTCGGCTGCAGC+AGG 0.330168 4_1:+40887377 None:intergenic
CTGCTACAAAAGGGATATTA+TGG 0.334992 4_1:+40888904 None:intergenic
CACAGTGGTTAGACTGTTAC+AGG 0.335440 4_1:-40888623 Msa0547580:three_prime_UTR
TGATTCAAAAGCAATGATAT+TGG 0.341179 4_1:+40893644 None:intergenic
CCATGAACATAATAAATTAC+AGG 0.344829 4_1:+40894988 None:intergenic
CCTGTCCTCATTATCGTTCC+AGG 0.345172 4_1:-40895179 Msa0547580:CDS
TGCCCTGCTGCAGCCGAGCT+CGG 0.346574 4_1:-40887380 Msa0547580:three_prime_UTR
GTATACCCTAAAATTCCTTC+TGG 0.348946 4_1:-40894209 Msa0547580:CDS
CATCTAGTGCTATTGAATTC+AGG 0.352626 4_1:-40894751 Msa0547580:intron
TTTGTGCTGCTATGTCTGTT+AGG 0.352835 4_1:-40895463 Msa0547580:intron
GTGATCTAGGGTTAGCAGTT+TGG 0.362512 4_1:+40887668 None:intergenic
CACAGAGATTATTAACTATA+GGG 0.364061 4_1:-40888298 Msa0547580:three_prime_UTR
GGTGACAGATAATTTGATCT+TGG 0.364764 4_1:+40893561 None:intergenic
GTCAACTTCGATATCATGTT+AGG 0.365328 4_1:-40887635 Msa0547580:three_prime_UTR
CGCCATCTTGTATGCATCTT+CGG 0.374613 4_1:+40895225 None:intergenic
AGTTTGCCTTGTCACCCATT+TGG 0.383313 4_1:+40894892 None:intergenic
ATATTATGGGTTTCTGGGAT+AGG 0.384205 4_1:-40895487 Msa0547580:CDS
GATTGCAAACTCAAGAACTA+TGG 0.384514 4_1:-40887563 Msa0547580:three_prime_UTR
ATCTGATATTATGGGTTTCT+GGG 0.386047 4_1:-40895492 Msa0547580:CDS
CTCATTCACTATTTCAATCA+AGG 0.390699 4_1:-40889026 Msa0547580:three_prime_UTR
CGTTCCGGAACGGTGTTTAC+CGG 0.393085 4_1:-40896798 Msa0547580:intron
GCCGTGAAACTTCTAGGATA+TGG 0.393856 4_1:-40894250 Msa0547580:CDS
CAGACGTTCAGATTCTAGTT+AGG 0.397027 4_1:+40887450 None:intergenic
CGTGCCTCATACACCCTTCA+AGG 0.403284 4_1:-40888781 Msa0547580:three_prime_UTR
ATTGAGAATATGGGTTTACT+TGG 0.405492 4_1:+40888034 None:intergenic
ACTTGATTTGTTGCTTTAGC+AGG 0.406156 4_1:+40887907 None:intergenic
TGACAAGGCAAACTCTTAAA+GGG 0.406437 4_1:-40894883 Msa0547580:CDS
GGTTATGAGGTCCTCGATCC+TGG 0.408649 4_1:+40895161 None:intergenic
ACACAGAGATTATTAACTAT+AGG 0.410370 4_1:-40888299 Msa0547580:three_prime_UTR
GAATTAATCACGTGATAGAT+TGG 0.410423 4_1:+40888477 None:intergenic
CAATCACACATCTACACATT+CGG 0.411360 4_1:+40887401 None:intergenic
GTGACAGATAATTTGATCTT+GGG 0.412536 4_1:+40893562 None:intergenic
TACAGTGGCGCTGCTACAAA+AGG 0.416249 4_1:+40888894 None:intergenic
GCAATGGAGCTTAATCCATT+AGG 0.416846 4_1:+40894637 None:intergenic
CAATTGCCAGAGGGCATTCA+TGG 0.418503 4_1:-40895294 Msa0547580:CDS
AGACCGAAGTCAAGAAGCTC+TGG 0.418880 4_1:+40894836 None:intergenic
CTTCTGTTCCTCTCTCCATT+CGG 0.420523 4_1:+40894122 None:intergenic
ATGACTCAAATTCCAACTTC+AGG 0.422494 4_1:-40888401 Msa0547580:three_prime_UTR
ACTGTCAATTCCAGCACATC+TGG 0.423348 4_1:+40894012 None:intergenic
TCCACCACTGTCACGTGGCC+AGG 0.426266 4_1:+40888648 None:intergenic
CATGTGATACCTGTGGTGTC+TGG 0.429395 4_1:-40894042 Msa0547580:CDS
CGGCACGGCGGCAGAAGCGG+CGG 0.430200 4_1:+40896819 None:intergenic
TGTGATCAATGTCGTGTTGT+TGG 0.430361 4_1:-40896604 Msa0547580:intron
TCAACAACCATTGAGAATAT+GGG 0.433150 4_1:+40888025 None:intergenic
TATACCCTAAAATTCCTTCT+GGG 0.437390 4_1:-40894208 Msa0547580:CDS
TAAATCTGATTACCTGAAGT+TGG 0.437870 4_1:+40888389 None:intergenic
CTCGGTCCTTGTTACTATCC+CGG 0.441802 4_1:+40888949 None:intergenic
GGGGCAGTGGGTAGGCGTAT+TGG 0.443315 4_1:-40894863 Msa0547580:CDS
CAGAAACATCTCCGGCGGTT+GGG 0.443612 4_1:+40896842 None:intergenic
AACTGTCTGGAATCAATCTC+TGG 0.444424 4_1:+40893746 None:intergenic
AGATTGGCTCATGTGCCTAA+TGG 0.445142 4_1:-40894652 Msa0547580:CDS
AGAGACAAAGTTCAACTGTC+TGG 0.445662 4_1:+40893733 None:intergenic
GTTGTTGTAGAATACAAAAT+CGG 0.450390 4_1:-40886880 Msa0547580:three_prime_UTR
GCAAACTCTTAAAGGGGCAG+TGG 0.450934 4_1:-40894876 Msa0547580:CDS
ACCATATCCTAGAAGTTTCA+CGG 0.450976 4_1:+40894249 None:intergenic
ATTAACTCAGGCGGTGGTGA+TGG 0.451540 4_1:+40894364 None:intergenic
TTGAACTTCAACTGTACCAT+TGG 0.453345 4_1:+40894180 None:intergenic
TGCCTTCAGCTCTTAAGATC+TGG 0.455075 4_1:-40894426 Msa0547580:CDS
ATGTGTTTAATTTACAAGCC+TGG 0.455360 4_1:+40893924 None:intergenic
ACTAGGGTCTCGTGTTATGC+TGG 0.455799 4_1:-40893789 Msa0547580:three_prime_UTR
AATCTCTGGTACAGAATCCT+TGG 0.457091 4_1:+40893760 None:intergenic
CGTTGCGATCGAAGAAGCTT+GGG 0.461715 4_1:-40886936 Msa0547580:three_prime_UTR
ATTGTCTGCATAACCCTTGA+AGG 0.462694 4_1:+40888767 None:intergenic
CTTCGTGATATTAAAGTCCA+TGG 0.463483 4_1:+40889060 None:intergenic
CAAGGGAAATCAGTTGCAAA+TGG 0.466137 4_1:-40894803 Msa0547580:CDS
AAGTAAACCCATATTCTCAA+TGG 0.467487 4_1:-40888032 Msa0547580:three_prime_UTR
AAGATCTTGCCATGCTGAGA+TGG 0.467716 4_1:+40888843 None:intergenic
TCACTTGCTCTTTGGAAGGA+TGG 0.470398 4_1:+40894611 None:intergenic
AGTCCATGGATACTCTATAG+TGG 0.473150 4_1:+40889074 None:intergenic
TGACTGTAAGCAATTTATGA+AGG 0.473976 4_1:-40894479 Msa0547580:CDS
GTAATTCTGTAACCTAGCTC+TGG 0.476662 4_1:+40887356 None:intergenic
GTGGTGCAGTCAAGCTGGTA+TGG 0.477582 4_1:+40888696 None:intergenic
GTGCCTGTAATGAGGCCAAA+TGG 0.478860 4_1:-40894907 Msa0547580:CDS
CATGGTGTTGTACATGCTAA+TGG 0.479985 4_1:-40895572 Msa0547580:CDS
CGTGTTGGAGAAGTTGGTGA+TGG 0.480654 4_1:-40896700 Msa0547580:CDS
CATTTCTGCTGATGATCTTG+AGG 0.481146 4_1:-40895639 Msa0547580:CDS
CACCAGTGACTTCATTCAAA+AGG 0.481665 4_1:+40894311 None:intergenic
GTTTATTGCAGTCAATAGCT+TGG 0.483314 4_1:+40888320 None:intergenic
GTTGTACATGCTAATGGTTA+TGG 0.485683 4_1:-40895566 Msa0547580:CDS
TCCCCAGAGCTTCTTGACTT+CGG 0.486064 4_1:-40894839 Msa0547580:CDS
GATGGAGGTGATGTTTCGTC+TGG 0.488976 4_1:-40896682 Msa0547580:CDS
CTGCTGATGATCTTGAGGAA+TGG 0.489195 4_1:-40895634 Msa0547580:CDS
CAACAGTTTCGTCAACATCA+AGG 0.489564 4_1:+40886899 None:intergenic
TTAGCAGTCTCTGCACTCCT+GGG 0.490833 4_1:+40895031 None:intergenic
AGGTGATGTTTCGTCTGGTT+TGG 0.491601 4_1:-40896677 Msa0547580:CDS
ACCACTGAATGAAATTTGAA+TGG 0.491821 4_1:+40888344 None:intergenic
CTCTTAAAGGGGCAGTGGGT+AGG 0.492217 4_1:-40894871 Msa0547580:CDS
TGGCAGATCTTGTTTCGTGT+TGG 0.492289 4_1:-40896715 Msa0547580:CDS
TGGGGTTATGAATTTGGGAC+TGG 0.492477 4_1:-40895262 Msa0547580:CDS
GAACGGCACGGCGGCAGAAG+CGG 0.493751 4_1:+40896816 None:intergenic
ACATCTCTTACATACAAACT+TGG 0.497300 4_1:+40893973 None:intergenic
GAGAGGAACAGAAGAATGGA+AGG 0.497458 4_1:-40894113 Msa0547580:CDS
TAACCCTTGAAGGGTGTATG+AGG 0.498078 4_1:+40888777 None:intergenic
ATGGGTGGTCTTCTTTAGGA+TGG 0.498222 4_1:+40894383 None:intergenic
ACCATTCAAATTTCATTCAG+TGG 0.503786 4_1:-40888345 Msa0547580:three_prime_UTR
TAGGGTATACACACGATCTC+GGG 0.503961 4_1:+40894222 None:intergenic
CTAAGGATGATGATGGAGAA+AGG 0.503983 4_1:-40894072 Msa0547580:CDS
AGAGAAATAACAGACTGTAC+AGG 0.504612 4_1:+40895139 None:intergenic
GCAGAAACATCTCCGGCGGT+TGG 0.506827 4_1:+40896841 None:intergenic
TTTGTCCAAGAAATTTGGAC+TGG 0.508061 4_1:-40895335 Msa0547580:CDS
TTAGGGTATACACACGATCT+CGG 0.508674 4_1:+40894221 None:intergenic
AGATCTTGCCATGCTGAGAT+GGG 0.509313 4_1:+40888844 None:intergenic
ACCTAGCTCTGGACCGAGCT+CGG 0.509997 4_1:+40887367 None:intergenic
ATTGGATTGAATGAAATTCA+GGG 0.512769 4_1:-40886962 Msa0547580:three_prime_UTR
GAAACCCATAATATCAGATC+CGG 0.515739 4_1:+40895496 None:intergenic
TGTATATTTATGAGAGACTA+GGG 0.516429 4_1:-40893805 Msa0547580:three_prime_UTR
GGTGGCTCGTCGCTTCTCTC+CGG 0.517601 4_1:-40895515 Msa0547580:CDS
TGGCTGCATACCAGATGTGC+TGG 0.517639 4_1:-40894022 Msa0547580:CDS
ACTATTGCGATTGTGATCTA+GGG 0.518276 4_1:+40887656 None:intergenic
GAAACCGGTAAACACCGTTC+CGG 0.520178 4_1:+40896794 None:intergenic
AATGGTACAGTTGAAGTTCA+AGG 0.522348 4_1:-40894178 Msa0547580:CDS
TTGTTTCGTGTTGGAGAAGT+TGG 0.522586 4_1:-40896706 Msa0547580:CDS
TGGAAGGTTGACTGCATTTG+TGG 0.523381 4_1:-40894097 Msa0547580:CDS
GCCGCCGTGCCGTTCCGGAA+CGG 0.526524 4_1:-40896808 Msa0547580:CDS
GCACCACAGAGGGCGATTTG+AGG 0.529764 4_1:-40888680 Msa0547580:three_prime_UTR
GAGAAATAACAGACTGTACA+GGG 0.531821 4_1:+40895140 None:intergenic
TCACGTGATAGATTGGAAGT+TGG 0.532073 4_1:+40888484 None:intergenic
TGATACATTTAACAGATCTA+GGG 0.532301 4_1:+40887092 None:intergenic
GCGTTGCGATCGAAGAAGCT+TGG 0.532431 4_1:-40886937 Msa0547580:three_prime_UTR
GCCAGAGGGCATTCATGGTA+TGG 0.532503 4_1:-40895289 Msa0547580:CDS
TTACAGGAAGGTTACTGTGA+TGG 0.535841 4_1:-40895359 Msa0547580:intron
GCCGAGCTCGGTCCAGAGCT+AGG 0.535880 4_1:-40887368 Msa0547580:three_prime_UTR
CCTCTGTGGTGCAGTCAAGC+TGG 0.537268 4_1:+40888691 None:intergenic
TGTTATGCTGGATTTATCCA+AGG 0.537415 4_1:-40893777 Msa0547580:three_prime_UTR
TTAACTCAGGCGGTGGTGAT+GGG 0.538447 4_1:+40894365 None:intergenic
TTTGGAAGGATGGCTTGCAA+TGG 0.539310 4_1:+40894621 None:intergenic
GGCAGCACACGTAACAGAGT+TGG 0.541146 4_1:-40888721 Msa0547580:three_prime_UTR
TGGAGAGAGGAACAGAAGAA+TGG 0.542622 4_1:-40894117 Msa0547580:CDS
GAAATCACTTGCTCTTTGGA+AGG 0.542791 4_1:+40894607 None:intergenic
TCACATCGGAATCACACATT+CGG 0.543587 4_1:-40887532 Msa0547580:three_prime_UTR
AATCACACATCTACACATTC+GGG 0.547210 4_1:+40887402 None:intergenic
TGCCTGTAATGAGGCCAAAT+GGG 0.548171 4_1:-40894906 Msa0547580:CDS
ACATAATAAATTACAGGGAG+TGG 0.548311 4_1:+40894994 None:intergenic
TCTCTTCTCCCATCTCAGCA+TGG 0.548536 4_1:-40888852 Msa0547580:three_prime_UTR
CAAAGACCTTGCACTAAATG+TGG 0.549659 4_1:-40895804 Msa0547580:CDS
CTTACTCTTAATGGAAGAGA+AGG 0.551976 4_1:-40895536 Msa0547580:CDS
ATGTATATTTATGAGAGACT+AGG 0.552817 4_1:-40893806 Msa0547580:three_prime_UTR
TTCCTTCTGGGGTCAACCAA+TGG 0.553492 4_1:-40894196 Msa0547580:CDS
AATCCGTGTGGGAGATAACC+AGG 0.554516 4_1:-40893942 Msa0547580:CDS
TACCATTGGTTGACCCCAGA+AGG 0.556401 4_1:+40894194 None:intergenic
TGACTGCATTTGTGGTACTA+AGG 0.556557 4_1:-40894089 Msa0547580:CDS
AAGAGGATGTTACGAGGTCG+AGG 0.557183 4_1:-40896636 Msa0547580:CDS
CACATATTGCAGAGATGAAG+CGG 0.558172 4_1:-40893906 Msa0547580:CDS
CCTGGAACGATAATGAGGAC+AGG 0.559753 4_1:+40895179 None:intergenic
TTCGGTCTTAAGCACTTGCA+AGG 0.560600 4_1:-40894821 Msa0547580:CDS
GAAATCAGTTGCAAATGGAA+TGG 0.561635 4_1:-40894798 Msa0547580:CDS
TTTCTCTCATTCCCAACCGC+CGG 0.561689 4_1:-40896853 Msa0547580:CDS
CACCCACTATAGAGTATCCA+TGG 0.562141 4_1:-40889077 Msa0547580:three_prime_UTR
AGCGGCGGCAGAAACATCTC+CGG 0.563018 4_1:+40896834 None:intergenic
CACCAGATCTTAAGAGCTGA+AGG 0.563451 4_1:+40894424 None:intergenic
TTAACGATCCGATCTTAGAT+CGG 0.564407 4_1:+40887495 None:intergenic
ATCTGCCACGTCATCAGAGA+AGG 0.565487 4_1:+40896730 None:intergenic
GACCGAGCTCGGCTGCAGCA+GGG 0.565542 4_1:+40887378 None:intergenic
TGAGAGAAAATCGTAAAGAT+CGG 0.568309 4_1:+40896867 None:intergenic
GTTGGAGAAGTTGGTGATGG+AGG 0.568722 4_1:-40896697 Msa0547580:CDS
CATGAACATAATAAATTACA+GGG 0.569899 4_1:+40894989 None:intergenic
TACTCTTGACATTGTTGAAG+AGG 0.570128 4_1:-40896653 Msa0547580:CDS
CATTGATGAACACTAATCAC+AGG 0.570728 4_1:+40887280 None:intergenic
CTCTCCAATTATCTGAAGCA+AGG 0.571531 4_1:-40895776 Msa0547580:intron
ACCATACCATGAATGCCCTC+TGG 0.571735 4_1:+40895288 None:intergenic
ACAGACTGTACAGGGTTATG+AGG 0.572142 4_1:+40895148 None:intergenic
TCCTACCTAGAATAAAGAGA+GGG 0.573325 4_1:-40888988 Msa0547580:three_prime_UTR
CAGGTAATCAGATTTAGACT+AGG 0.574534 4_1:-40888382 Msa0547580:three_prime_UTR
GGAGTTCCACATTTAGTGCA+AGG 0.575869 4_1:+40895798 None:intergenic
GTCCATGGATACTCTATAGT+GGG 0.577540 4_1:+40889075 None:intergenic
CATGGATACTCTATAGTGGG+TGG 0.581148 4_1:+40889078 None:intergenic
GAATTCAATAGCACTAGATG+TGG 0.582215 4_1:+40894754 None:intergenic
TCGATCCTGGAACGATAATG+AGG 0.584434 4_1:+40895174 None:intergenic
TGCTTCATGCAATTGCCAGA+GGG 0.584514 4_1:-40895303 Msa0547580:CDS
CAGCTTGACTGCACCACAGA+GGG 0.584661 4_1:-40888690 Msa0547580:three_prime_UTR
TAATGAGGACAGGGGCATGT+TGG 0.585572 4_1:+40895189 None:intergenic
AGCACAATTAACTCAGGCGG+TGG 0.587016 4_1:+40894358 None:intergenic
CTGGAACGATAATGAGGACA+GGG 0.587261 4_1:+40895180 None:intergenic
ACAGTGGCGCTGCTACAAAA+GGG 0.588316 4_1:+40888895 None:intergenic
GGGTTATGCAGACAATGTGA+TGG 0.589510 4_1:-40888760 Msa0547580:three_prime_UTR
GACCGAAGTCAAGAAGCTCT+GGG 0.590778 4_1:+40894837 None:intergenic
GATTATTAACTATAGGGCAT+CGG 0.593189 4_1:-40888292 Msa0547580:three_prime_UTR
ATGGATACTCTATAGTGGGT+GGG 0.593440 4_1:+40889079 None:intergenic
AGGTCTTTGATATGCTGCAT+TGG 0.594618 4_1:+40895818 None:intergenic
AGGGCAGTTATATGGCATCA+TGG 0.596673 4_1:+40893540 None:intergenic
ACTCAGGCGGTGGTGATGGG+TGG 0.596918 4_1:+40894368 None:intergenic
CTTGCTTCAGATAATTGGAG+AGG 0.597599 4_1:+40895777 None:intergenic
TTGCTTCATGCAATTGCCAG+AGG 0.599692 4_1:-40895304 Msa0547580:CDS
TGGCTTAGCACGATTCCGAA+TGG 0.602115 4_1:-40894137 Msa0547580:CDS
TCAACATTAGTAGCATTCAA+AGG 0.603217 4_1:+40894334 None:intergenic
CGGTAAACACCGTTCCGGAA+CGG 0.603326 4_1:+40896799 None:intergenic
ACTCTTAATGGAAGAGAAGG+TGG 0.606675 4_1:-40895533 Msa0547580:CDS
TGTGGTACTAAGGATGATGA+TGG 0.607260 4_1:-40894079 Msa0547580:CDS
CATTCATGGTATGGTAATTG+GGG 0.608012 4_1:-40895280 Msa0547580:CDS
CTCTTACATACAAACTTGGA+AGG 0.608157 4_1:+40893977 None:intergenic
AAAGCCTGGCCACGTGACAG+TGG 0.608300 4_1:-40888652 Msa0547580:three_prime_UTR
GGGTCTTTCGTTCATAACCA+TGG 0.609508 4_1:+40896918 None:intergenic
GCCTGGCCACGTGACAGTGG+TGG 0.610313 4_1:-40888649 Msa0547580:three_prime_UTR
TACCGAAGATGCATACAAGA+TGG 0.612813 4_1:-40895227 Msa0547580:CDS
CTGGAATTGACAGTGCTGAT+GGG 0.613480 4_1:-40894003 Msa0547580:CDS
GGTTATGCAGACAATGTGAT+GGG 0.613588 4_1:-40888759 Msa0547580:three_prime_UTR
CCCCTCTCTTTATTCTAGGT+AGG 0.613980 4_1:+40888987 None:intergenic
GAAGAAGCTTGGGATTTGAG+AGG 0.616979 4_1:-40886926 Msa0547580:three_prime_UTR
ATGAGGCCAAATGGGTGACA+AGG 0.617957 4_1:-40894898 Msa0547580:CDS
AAAGGCAGCACAATTAACTC+AGG 0.618250 4_1:+40894352 None:intergenic
CAAACTCTTAAAGGGGCAGT+GGG 0.620060 4_1:-40894875 Msa0547580:CDS
GCTGGAATTGACAGTGCTGA+TGG 0.620926 4_1:-40894004 Msa0547580:CDS
TGCATCAAGTGCCTGTAATG+AGG 0.624858 4_1:-40894915 Msa0547580:CDS
TCGGTCTTAAGCACTTGCAA+GGG 0.628349 4_1:-40894820 Msa0547580:CDS
AGTGACCGCCGATCTAAGAT+CGG 0.628781 4_1:-40887503 Msa0547580:three_prime_UTR
GCTCCTCAAATCGCCCTCTG+TGG 0.629143 4_1:+40888677 None:intergenic
TTGTCTGCATAACCCTTGAA+GGG 0.631202 4_1:+40888768 None:intergenic
TCATTATCGTTCCAGGATCG+AGG 0.631565 4_1:-40895172 Msa0547580:CDS
GTGCCTCATACACCCTTCAA+GGG 0.638339 4_1:-40888780 Msa0547580:three_prime_UTR
AACACCGTTCCGGAACGGCA+CGG 0.638834 4_1:+40896804 None:intergenic
AACAACACACATCTTCTGCA+TGG 0.642554 4_1:-40895590 Msa0547580:CDS
GCACGATTCCGAATGGAGAG+AGG 0.643389 4_1:-40894130 Msa0547580:CDS
GACGAGAAATGATGTCGAAG+AGG 0.646283 4_1:-40894966 Msa0547580:intron
ATACCCTAAAATTCCTTCTG+GGG 0.646521 4_1:-40894207 Msa0547580:CDS
AATTCAATAGCACTAGATGT+GGG 0.647489 4_1:+40894755 None:intergenic
TGATATCGCTTTCGACACAC+AGG 0.648182 4_1:+40895867 None:intergenic
ATCCTACCTAGAATAAAGAG+AGG 0.648598 4_1:-40888989 Msa0547580:three_prime_UTR
GATAAGCCGGGATAGTAACA+AGG 0.649319 4_1:-40888955 Msa0547580:three_prime_UTR
CAAAATCGAGCAAATGACCT+CGG 0.649705 4_1:-40894452 Msa0547580:CDS
ACGATCCGATCTTAGATCGG+CGG 0.650382 4_1:+40887498 None:intergenic
GGCAGCACAATTAACTCAGG+CGG 0.652831 4_1:+40894355 None:intergenic
GTGGTTCCACCACTGTCACG+TGG 0.653777 4_1:+40888643 None:intergenic
GACAAGGCAAACTCTTAAAG+GGG 0.656461 4_1:-40894882 Msa0547580:CDS
GGTATGCAGCCAGACACCAC+AGG 0.658046 4_1:+40894033 None:intergenic
TGTGTTAACTCAATCCGTGT+GGG 0.658395 4_1:-40893953 Msa0547580:CDS
CCAATTTATTGATGCCACTG+TGG 0.663505 4_1:+40888444 None:intergenic
GGCGGCAGAAACATCTCCGG+CGG 0.667647 4_1:+40896837 None:intergenic
ATGTGTTAACTCAATCCGTG+TGG 0.672293 4_1:-40893954 Msa0547580:CDS
GATGGGCATGTAGATCTGCT+AGG 0.676494 4_1:-40888742 Msa0547580:three_prime_UTR
AAAGATTAATAGGAAAACAG+TGG 0.680975 4_1:-40894524 Msa0547580:CDS
CTATGGAAACTAATTCACAT+CGG 0.683546 4_1:-40887546 Msa0547580:three_prime_UTR
AAGCCTGGTTATCTCCCACA+CGG 0.684838 4_1:+40893939 None:intergenic
ATGGTTGTATCATCAACTTG+AGG 0.693179 4_1:-40895615 Msa0547580:CDS
AAGAGCTGAAGGCAGCTCCG+AGG 0.699457 4_1:+40894435 None:intergenic
ACCGAAGTCAAGAAGCTCTG+GGG 0.701812 4_1:+40894838 None:intergenic
CGAAGATGCATACAAGATGG+CGG 0.703099 4_1:-40895224 Msa0547580:CDS
CGGGATAGTAACAAGGACCG+AGG 0.703383 4_1:-40888948 Msa0547580:three_prime_UTR
TGGAACGATAATGAGGACAG+GGG 0.703505 4_1:+40895181 None:intergenic
CCTACCTAGAATAAAGAGAG+GGG 0.716820 4_1:-40888987 Msa0547580:three_prime_UTR
ACCGTTCCGGAACGGCACGG+CGG 0.727611 4_1:+40896807 None:intergenic
ATATTGCAGAGATGAAGCGG+TGG 0.735388 4_1:-40893903 Msa0547580:CDS
ATGTTAGCATGTGATACCTG+TGG 0.742288 4_1:-40894049 Msa0547580:CDS
CCAGCTTGACTGCACCACAG+AGG 0.744311 4_1:-40888691 Msa0547580:three_prime_UTR
ATTCACAATCTTAACCACAG+TGG 0.753267 4_1:-40888458 Msa0547580:three_prime_UTR
CTGTAACAGTCTAACCACTG+TGG 0.758424 4_1:+40888624 None:intergenic
TTGTTGAAGAGGATGTTACG+AGG 0.760276 4_1:-40896642 Msa0547580:CDS
TGACAGTGGTGGAACCACAG+TGG 0.765043 4_1:-40888638 Msa0547580:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTTTA+AGG + chr4_1:40890824-40890843 None:intergenic 0.0%
!! AAAAAAAAAAAAAAAAAAAA+AGG - chr4_1:40890825-40890844 Msa0547580:intron 0.0%
!!! TTTTCTATTTTTTTTTTTTG+GGG - chr4_1:40887244-40887263 Msa0547580:three_prime_UTR 10.0%
!!! AATATAAAAAATGTGAATTT+TGG - chr4_1:40889927-40889946 Msa0547580:intron 10.0%
!! ATTCTATTAGAAATTAAATT+AGG - chr4_1:40894225-40894244 Msa0547580:CDS 10.0%
!!! ATTTTTTCTTTAAAATCAAA+GGG + chr4_1:40894501-40894520 None:intergenic 10.0%
!!! TATTTTTTCTTTAAAATCAA+AGG + chr4_1:40894502-40894521 None:intergenic 10.0%
!!! TATTATGGTAAAATATTTTT+TGG + chr4_1:40894865-40894884 None:intergenic 10.0%
!!! ATTAAGTTTTTGATATAATT+CGG + chr4_1:40896195-40896214 None:intergenic 10.0%
!! AAAAAAAAAAACTGTGATAT+AGG + chr4_1:40887344-40887363 None:intergenic 15.0%
!! TGTTGTTATAATTATGTTAT+AGG - chr4_1:40887393-40887412 Msa0547580:three_prime_UTR 15.0%
!! TAAATTTAGATTTAAAAAGC+TGG - chr4_1:40887572-40887591 Msa0547580:three_prime_UTR 15.0%
!!! TATATTTGATCATTTTTTCA+GGG + chr4_1:40889233-40889252 None:intergenic 15.0%
!!! TTTTTGAAGGAAAAAAAAAA+GGG + chr4_1:40890263-40890282 None:intergenic 15.0%
!!! TTTTTTGAAGGAAAAAAAAA+AGG + chr4_1:40890264-40890283 None:intergenic 15.0%
!! TTTATACAAAATAAAACAGA+TGG - chr4_1:40890378-40890397 Msa0547580:intron 15.0%
!! TTATACAAAATAAAACAGAT+GGG - chr4_1:40890379-40890398 Msa0547580:intron 15.0%
!!! TATATTTTTCTCAGAATTTT+TGG + chr4_1:40891593-40891612 None:intergenic 15.0%
!!! ATTCTGAGAAAAATATAATA+AGG - chr4_1:40891596-40891615 Msa0547580:intron 15.0%
!! AAATATAATAAGGATTATTG+TGG - chr4_1:40891606-40891625 Msa0547580:intron 15.0%
!! TTAATTCACATATATTGTAT+TGG + chr4_1:40893653-40893672 None:intergenic 15.0%
!! TTTACAATTTATTATTGTTG+TGG + chr4_1:40894178-40894197 None:intergenic 15.0%
!! TAAAAACAGATTTATTACAA+CGG - chr4_1:40894194-40894213 Msa0547580:CDS 15.0%
!! GCTTATGAAATATTAAAAAT+TGG + chr4_1:40894282-40894301 None:intergenic 15.0%
!!! TTTTTTCTTTAAAATCAAAG+GGG + chr4_1:40894500-40894519 None:intergenic 15.0%
!! TAAGCTAATATTATAGATTT+CGG + chr4_1:40896086-40896105 None:intergenic 15.0%
!!! TACTAGTTTATAGATATATT+AGG + chr4_1:40896536-40896555 None:intergenic 15.0%
!!! TTATTGGATTTGTTTAAATT+TGG + chr4_1:40896578-40896597 None:intergenic 15.0%
!!! AGAATTTGAATTTTTGAATT+TGG + chr4_1:40896722-40896741 None:intergenic 15.0%
!!! TTTCAAATTTGCTGTAATTT+AGG - chr4_1:40887547-40887566 Msa0547580:three_prime_UTR 20.0%
!!! ATTGTGCTATAAATTTTTAC+AGG - chr4_1:40888406-40888425 Msa0547580:three_prime_UTR 20.0%
!! CATGAACATAATAAATTACA+GGG + chr4_1:40888795-40888814 None:intergenic 20.0%
!!! CTATATTTGATCATTTTTTC+AGG + chr4_1:40889234-40889253 None:intergenic 20.0%
!! AATATAGACCAAAGATTAAT+AGG - chr4_1:40889247-40889266 Msa0547580:intron 20.0%
!!! TTTTTTATATTACAACGAAC+AGG + chr4_1:40889918-40889937 None:intergenic 20.0%
!! GAAAAAAAAATTTGTCATGA+TGG + chr4_1:40890116-40890135 None:intergenic 20.0%
!!! TCAGGTATTTTTTTTTTTGA+AGG + chr4_1:40890276-40890295 None:intergenic 20.0%
!! AATTAAGCAAAAAAAGAAAG+TGG - chr4_1:40890318-40890337 Msa0547580:intron 20.0%
!!! TGTTTTAATTAGTTATTCTG+TGG + chr4_1:40890511-40890530 None:intergenic 20.0%
!!! GCAGTGTTTTTTTTTTTTAT+CGG + chr4_1:40890893-40890912 None:intergenic 20.0%
!! TGGTTCAATTAATTAGTATA+AGG + chr4_1:40891265-40891284 None:intergenic 20.0%
!!! AAGTGCATATACTTTTATTT+GGG - chr4_1:40892131-40892150 Msa0547580:intron 20.0%
!! TGATACTATATTGAAAACTA+TGG + chr4_1:40892748-40892767 None:intergenic 20.0%
!! AATTGAGGAAATAATTTAGA+GGG - chr4_1:40893974-40893993 Msa0547580:CDS 20.0%
!!! TGAACCTGATTTTTTTTTTT+GGG + chr4_1:40894121-40894140 None:intergenic 20.0%
!!! TTGAACCTGATTTTTTTTTT+TGG + chr4_1:40894122-40894141 None:intergenic 20.0%
!!! AATAATGTCTAAGTTGATAT+TGG + chr4_1:40894154-40894173 None:intergenic 20.0%
!! TATACCATACTTGTAAAAAA+AGG - chr4_1:40894249-40894268 Msa0547580:CDS 20.0%
!!! TTCCAAAAATGATATTTTCA+GGG + chr4_1:40895205-40895224 None:intergenic 20.0%
!!! ATTCCAAAAATGATATTTTC+AGG + chr4_1:40895206-40895225 None:intergenic 20.0%
!!! AATAATATTTTCAGCTTCAT+TGG + chr4_1:40895621-40895640 None:intergenic 20.0%
!!! ATTTCTGCCAAATAATTTTA+AGG + chr4_1:40895923-40895942 None:intergenic 20.0%
!!! AGATTTGATTTTAGGTTTTT+GGG + chr4_1:40896005-40896024 None:intergenic 20.0%
!!! TAGATTTGATTTTAGGTTTT+TGG + chr4_1:40896006-40896025 None:intergenic 20.0%
!!! ATTGCAATAGATTTGATTTT+AGG + chr4_1:40896013-40896032 None:intergenic 20.0%
!!! ATAATCAATCAATGTTTTCT+TGG + chr4_1:40896450-40896469 None:intergenic 20.0%
!! ATCAATTCACTTGAATTTAT+TGG + chr4_1:40896594-40896613 None:intergenic 20.0%
!!! TCTATTTTTTTTTTTTGGGG+AGG - chr4_1:40887247-40887266 Msa0547580:three_prime_UTR 25.0%
!!! TTTTTTTTTTGAAACTGCGT+AGG - chr4_1:40887355-40887374 Msa0547580:three_prime_UTR 25.0%
! ATAGATTACACAAAAGCTAA+AGG - chr4_1:40887679-40887698 Msa0547580:three_prime_UTR 25.0%
!! TTAGTACTATGATAATGATG+TGG - chr4_1:40887786-40887805 Msa0547580:three_prime_UTR 25.0%
!! TAGTACTATGATAATGATGT+GGG - chr4_1:40887787-40887806 Msa0547580:three_prime_UTR 25.0%
!! TTGTTGATGGAAAAAAACAA+AGG - chr4_1:40887878-40887897 Msa0547580:three_prime_UTR 25.0%
!! TGCTATAAATTTTTACAGGA+AGG - chr4_1:40888410-40888429 Msa0547580:three_prime_UTR 25.0%
! CCATGAACATAATAAATTAC+AGG + chr4_1:40888796-40888815 None:intergenic 25.0%
! CCTGTAATTTATTATGTTCA+TGG - chr4_1:40888793-40888812 Msa0547580:three_prime_UTR 25.0%
! GATTATATAAAACATCAGCT+GGG + chr4_1:40889103-40889122 None:intergenic 25.0%
! TTATATAATCCTTGACAGAT+TGG - chr4_1:40889113-40889132 Msa0547580:intron 25.0%
!! ACTGTTTTCCTATTAATCTT+TGG + chr4_1:40889258-40889277 None:intergenic 25.0%
! AAAGATTAATAGGAAAACAG+TGG - chr4_1:40889257-40889276 Msa0547580:intron 25.0%
! ATGTATATTTATGAGAGACT+AGG - chr4_1:40889975-40889994 Msa0547580:intron 25.0%
! TGTATATTTATGAGAGACTA+GGG - chr4_1:40889976-40889995 Msa0547580:intron 25.0%
! TGATTCAAAAGCAATGATAT+TGG + chr4_1:40890140-40890159 None:intergenic 25.0%
! AAAAAAAAAGGGCAGTTATA+TGG + chr4_1:40890252-40890271 None:intergenic 25.0%
! ATACTAAAACTAAAACAGTC+AGG + chr4_1:40890294-40890313 None:intergenic 25.0%
! TTGTATAAATTTGTGTTCTC+TGG + chr4_1:40890367-40890386 None:intergenic 25.0%
! AAAACAGATGGGTAATTATT+TGG - chr4_1:40890390-40890409 Msa0547580:intron 25.0%
!! GACATGTAGATTTTAAACAT+GGG + chr4_1:40890589-40890608 None:intergenic 25.0%
!! TGACATGTAGATTTTAAACA+TGG + chr4_1:40890590-40890609 None:intergenic 25.0%
! ACAGGATAAAAAACAGATAT+AGG - chr4_1:40890618-40890637 Msa0547580:intron 25.0%
! CAGGATAAAAAACAGATATA+GGG - chr4_1:40890619-40890638 Msa0547580:intron 25.0%
! AGGATAAAAAACAGATATAG+GGG - chr4_1:40890620-40890639 Msa0547580:intron 25.0%
! TTAAAAATTGAAAGCTGAAG+TGG - chr4_1:40891650-40891669 Msa0547580:intron 25.0%
! TAAAAATTGAAAGCTGAAGT+GGG - chr4_1:40891651-40891670 Msa0547580:intron 25.0%
! TCAAGTATGTTCAAACTAAT+CGG + chr4_1:40891856-40891875 None:intergenic 25.0%
!! GAAGTGCATATACTTTTATT+TGG - chr4_1:40892130-40892149 Msa0547580:intron 25.0%
!!! CATATACTTTTATTTGGGAA+AGG - chr4_1:40892136-40892155 Msa0547580:intron 25.0%
! ATTCCTTTCACAAATATACA+AGG + chr4_1:40892340-40892359 None:intergenic 25.0%
!! GTTTAATTTCTTACTCTACT+TGG + chr4_1:40892423-40892442 None:intergenic 25.0%
!!! AGTAAGTATGTTCTAAAACA+TGG + chr4_1:40892494-40892513 None:intergenic 25.0%
! AGTAAAACTACTCCTTTAAT+AGG + chr4_1:40892533-40892552 None:intergenic 25.0%
! TATTATGCAAGTTACAATCA+GGG + chr4_1:40892678-40892697 None:intergenic 25.0%
! ATATTATGCAAGTTACAATC+AGG + chr4_1:40892679-40892698 None:intergenic 25.0%
! AAGGATTAACAAGAAAATGA+TGG + chr4_1:40892922-40892941 None:intergenic 25.0%
!! TTTGAAATGATTAAAGCAGA+TGG + chr4_1:40893102-40893121 None:intergenic 25.0%
!! TGAAAAGTGATGAATGTTTT+GGG + chr4_1:40893491-40893510 None:intergenic 25.0%
!!! TCTTAAAATTGATTTGTCCA+TGG - chr4_1:40893591-40893610 Msa0547580:three_prime_UTR 25.0%
! AAAAGATATAGTTTCCCAAA+AGG + chr4_1:40893921-40893940 None:intergenic 25.0%
! GAATTGAGGAAATAATTTAG+AGG - chr4_1:40893973-40893992 Msa0547580:CDS 25.0%
!! TGAATATCTATATCCTTTTG+AGG + chr4_1:40894087-40894106 None:intergenic 25.0%
!!! ATATTTTTTGGTAGAATCCT+CGG + chr4_1:40894853-40894872 None:intergenic 25.0%
! ACACAGAGATTATTAACTAT+AGG - chr4_1:40895482-40895501 Msa0547580:CDS 25.0%
! CACAGAGATTATTAACTATA+GGG - chr4_1:40895483-40895502 Msa0547580:CDS 25.0%
! TCATTTCTTCTTACTTTATC+AGG - chr4_1:40895569-40895588 Msa0547580:CDS 25.0%
!! TTTACTTGGAAAAGCTTTTT+AGG + chr4_1:40895736-40895755 None:intergenic 25.0%
! ATTATTTGGCAGAAATCTTT+AGG - chr4_1:40895927-40895946 Msa0547580:intron 25.0%
!! TGATCTTGTTATGTTGAATT+TGG + chr4_1:40895961-40895980 None:intergenic 25.0%
! TGATACATTTAACAGATCTA+GGG + chr4_1:40896692-40896711 None:intergenic 25.0%
! TTGATACATTTAACAGATCT+AGG + chr4_1:40896693-40896712 None:intergenic 25.0%
! TATTGGATTGAATGAAATTC+AGG - chr4_1:40896818-40896837 Msa0547580:CDS 25.0%
! ATTGGATTGAATGAAATTCA+GGG - chr4_1:40896819-40896838 Msa0547580:CDS 25.0%
! GTTGTTGTAGAATACAAAAT+CGG - chr4_1:40896901-40896920 Msa0547580:CDS 25.0%
! ATACAAAATCGGTTATTCTT+TGG - chr4_1:40896912-40896931 Msa0547580:CDS 25.0%
TGAGAGAAAATCGTAAAGAT+CGG + chr4_1:40886917-40886936 None:intergenic 30.0%
!!! ATTATTTTGATGTACACACC+TGG - chr4_1:40887294-40887313 Msa0547580:three_prime_UTR 30.0%
! ATACTTTGACTGTTTGTTGA+TGG - chr4_1:40887865-40887884 Msa0547580:three_prime_UTR 30.0%
TGATGGAAAAAAACAAAGGA+TGG - chr4_1:40887882-40887901 Msa0547580:three_prime_UTR 30.0%
AGCGATATCACTTCATAATA+AGG - chr4_1:40887927-40887946 Msa0547580:three_prime_UTR 30.0%
AGTTTGAAGGATTGAAATTG+TGG - chr4_1:40888082-40888101 Msa0547580:three_prime_UTR 30.0%
ATCTGATATTATGGGTTTCT+GGG - chr4_1:40888289-40888308 Msa0547580:three_prime_UTR 30.0%
! TTACATTTTGCTTCAGAGTT+TGG - chr4_1:40888367-40888386 Msa0547580:three_prime_UTR 30.0%
ATGGATTTGTCCAAGAAATT+TGG - chr4_1:40888441-40888460 Msa0547580:three_prime_UTR 30.0%
ATAATCCAGTCCAAATTTCT+TGG + chr4_1:40888454-40888473 None:intergenic 30.0%
GTAATTGGGGTTATGAATTT+GGG - chr4_1:40888514-40888533 Msa0547580:three_prime_UTR 30.0%
TATTTCTCTTTACCAGTCAT+TGG - chr4_1:40888656-40888675 Msa0547580:three_prime_UTR 30.0%
TTGAACCAATTCCAACAAAA+AGG + chr4_1:40888718-40888737 None:intergenic 30.0%
ACATAATAAATTACAGGGAG+TGG + chr4_1:40888790-40888809 None:intergenic 30.0%
AATTCAATAGCACTAGATGT+GGG + chr4_1:40889029-40889048 None:intergenic 30.0%
TTGAATTCAGGTAAGAGTAA+TGG - chr4_1:40889042-40889061 Msa0547580:three_prime_UTR 30.0%
GAAGCAACTATTCACAAAAA+AGG + chr4_1:40889072-40889091 None:intergenic 30.0%
GGATTATATAAAACATCAGC+TGG + chr4_1:40889104-40889123 None:intergenic 30.0%
TGACTGTAAGCAATTTATGA+AGG - chr4_1:40889302-40889321 Msa0547580:intron 30.0%
TCAACATTAGTAGCATTCAA+AGG + chr4_1:40889450-40889469 None:intergenic 30.0%
TATACCCTAAAATTCCTTCT+GGG - chr4_1:40889573-40889592 Msa0547580:intron 30.0%
ACATCTCTTACATACAAACT+TGG + chr4_1:40889811-40889830 None:intergenic 30.0%
! ATGTGTTTAATTTACAAGCC+TGG + chr4_1:40889860-40889879 None:intergenic 30.0%
GTGACAGATAATTTGATCTT+GGG + chr4_1:40890222-40890241 None:intergenic 30.0%
! AAACAGATTTTAAACCAACC+AGG - chr4_1:40890428-40890447 Msa0547580:intron 30.0%
TTATGCATACTTAACATGAC+TGG + chr4_1:40890540-40890559 None:intergenic 30.0%
CTACATGTCAGATAAAAAAC+AGG - chr4_1:40890600-40890619 Msa0547580:intron 30.0%
ATAAAAAACAGATATAGGGG+TGG - chr4_1:40890623-40890642 Msa0547580:intron 30.0%
TAAAAAACAGATATAGGGGT+GGG - chr4_1:40890624-40890643 Msa0547580:intron 30.0%
!!! GTTTCTGGTTTTCTGTTTTT+AGG + chr4_1:40890682-40890701 None:intergenic 30.0%
! CATCTTTATACATGGTTTTC+TGG + chr4_1:40890718-40890737 None:intergenic 30.0%
CAGAAAACCATGTATAAAGA+TGG - chr4_1:40890716-40890735 Msa0547580:intron 30.0%
CCTAAATGGTTTCATGAATT+TGG + chr4_1:40890767-40890786 None:intergenic 30.0%
CCAAATTCATGAAACCATTT+AGG - chr4_1:40890764-40890783 Msa0547580:intron 30.0%
ATGAAACCATTTAGGAAGAT+AGG - chr4_1:40890772-40890791 Msa0547580:intron 30.0%
CTGAAAAAAAACAGAAGTTG+CGG - chr4_1:40890797-40890816 Msa0547580:intron 30.0%
! CATACATGGTTTCATGATTT+TGG + chr4_1:40890860-40890879 None:intergenic 30.0%
!!! ACGCTTTTTTCGATTTTAAG+AGG + chr4_1:40890919-40890938 None:intergenic 30.0%
TTTGATTAAGGGTTGTCTAA+TGG + chr4_1:40891057-40891076 None:intergenic 30.0%
CAACAATATTCCAGTACATT+TGG + chr4_1:40891129-40891148 None:intergenic 30.0%
CAAATGTACTGGAATATTGT+TGG - chr4_1:40891127-40891146 Msa0547580:intron 30.0%
! AATCATCACCAAACTTTTAG+TGG - chr4_1:40891218-40891237 Msa0547580:intron 30.0%
AAAGGTTACCACTAAAAGTT+TGG + chr4_1:40891229-40891248 None:intergenic 30.0%
TGAACCATTATAATCCTCTT+TGG - chr4_1:40891278-40891297 Msa0547580:intron 30.0%
GACACATTATAACTGTTGTA+TGG - chr4_1:40891542-40891561 Msa0547580:intron 30.0%
GACTAAGTTTAACAACATTG+TGG - chr4_1:40891757-40891776 Msa0547580:intron 30.0%
ACTCAATTTCTAAACTAGTG+TGG + chr4_1:40891819-40891838 None:intergenic 30.0%
TAGTTTAGAAATTGAGTGAC+TGG - chr4_1:40891822-40891841 Msa0547580:intron 30.0%
AAGTATGTTCAAACTAATCG+GGG + chr4_1:40891854-40891873 None:intergenic 30.0%
CAAGTATGTTCAAACTAATC+GGG + chr4_1:40891855-40891874 None:intergenic 30.0%
!! AGAAAACTGATTTTCAACCA+TGG - chr4_1:40891883-40891902 Msa0547580:intron 30.0%
ATTAATATACAGGGACTTGT+GGG + chr4_1:40892041-40892060 None:intergenic 30.0%
AATTAATATACAGGGACTTG+TGG + chr4_1:40892042-40892061 None:intergenic 30.0%
TCCCTGTATATTAATTACAG+AGG - chr4_1:40892046-40892065 Msa0547580:intron 30.0%
CCCTCTGTAATTAATATACA+GGG + chr4_1:40892050-40892069 None:intergenic 30.0%
CCCTGTATATTAATTACAGA+GGG - chr4_1:40892047-40892066 Msa0547580:intron 30.0%
CCTGTATATTAATTACAGAG+GGG - chr4_1:40892048-40892067 Msa0547580:intron 30.0%
CTTGTGTAAAAAACAGGATA+AGG + chr4_1:40892244-40892263 None:intergenic 30.0%
!!! TATCCTGTTTTTTACACAAG+AGG - chr4_1:40892244-40892263 Msa0547580:intron 30.0%
TCACCTTGTATATTTGTGAA+AGG - chr4_1:40892334-40892353 Msa0547580:intron 30.0%
TTGTAAATCAGAACTTGGAT+GGG - chr4_1:40892384-40892403 Msa0547580:intron 30.0%
!! TATGTTCTAAAACATGGTCA+GGG + chr4_1:40892488-40892507 None:intergenic 30.0%
CAAAGATACATGCCTATTAA+AGG - chr4_1:40892518-40892537 Msa0547580:intron 30.0%
ATTATGCAAGTTACAATCAG+GGG + chr4_1:40892677-40892696 None:intergenic 30.0%
! GTCTTCAATTTCTGAGAAAT+TGG - chr4_1:40892851-40892870 Msa0547580:intron 30.0%
AGATCTTCCGAAATTTATTG+AGG - chr4_1:40892984-40893003 Msa0547580:intron 30.0%
GATCTTCCGAAATTTATTGA+GGG - chr4_1:40892985-40893004 Msa0547580:intron 30.0%
! TGTGAAGTTTTCTGCAAATA+TGG - chr4_1:40893065-40893084 Msa0547580:intron 30.0%
! GAGGAAAAGAATTTTGTTGA+TGG + chr4_1:40893337-40893356 None:intergenic 30.0%
! GTGAAAAGTGATGAATGTTT+TGG + chr4_1:40893492-40893511 None:intergenic 30.0%
GGAAAAGATCAGATCATATT+TGG - chr4_1:40893520-40893539 Msa0547580:intron 30.0%
! TGGTCAAAGTTTGTTTATAC+CGG - chr4_1:40893546-40893565 Msa0547580:three_prime_UTR 30.0%
!! AATTGATTTGTCCATGGAAA+AGG - chr4_1:40893597-40893616 Msa0547580:three_prime_UTR 30.0%
CTAGAAATTAACAGACCAAA+AGG - chr4_1:40893729-40893748 Msa0547580:three_prime_UTR 30.0%
! ATTCTTTTCAGAAAGCCTTT+TGG + chr4_1:40893747-40893766 None:intergenic 30.0%
ATATAGTTTCCCAAAAGGTA+GGG + chr4_1:40893916-40893935 None:intergenic 30.0%
GGAACTGAAAAAATGAATTG+AGG - chr4_1:40893959-40893978 Msa0547580:CDS 30.0%
TTAATGAGTGTTATACGAAG+CGG + chr4_1:40894034-40894053 None:intergenic 30.0%
!!! TGATTTTTTTTTTTGGGTGG+GGG + chr4_1:40894115-40894134 None:intergenic 30.0%
!!! CTGATTTTTTTTTTTGGGTG+GGG + chr4_1:40894116-40894135 None:intergenic 30.0%
!!! CCTGATTTTTTTTTTTGGGT+GGG + chr4_1:40894117-40894136 None:intergenic 30.0%
!!! ACCTGATTTTTTTTTTTGGG+TGG + chr4_1:40894118-40894137 None:intergenic 30.0%
!!! CTAGCCTTTTTTTACAAGTA+TGG + chr4_1:40894256-40894275 None:intergenic 30.0%
TTCATAAGCCACATAATATC+TGG - chr4_1:40894293-40894312 Msa0547580:CDS 30.0%
AAGTTGAACCAGATATTATG+TGG + chr4_1:40894304-40894323 None:intergenic 30.0%
! ACATAATATCTGGTTCAACT+TGG - chr4_1:40894303-40894322 Msa0547580:CDS 30.0%
! CATAATATCTGGTTCAACTT+GGG - chr4_1:40894304-40894323 Msa0547580:CDS 30.0%
CAGAGCCAATGAAATAAAAT+GGG - chr4_1:40894540-40894559 Msa0547580:CDS 30.0%
!! CCAATCCCATTTTATTTCAT+TGG + chr4_1:40894548-40894567 None:intergenic 30.0%
CCAATGAAATAAAATGGGAT+TGG - chr4_1:40894545-40894564 Msa0547580:CDS 30.0%
GAAATAAAATGGGATTGGAA+AGG - chr4_1:40894550-40894569 Msa0547580:CDS 30.0%
GCTATTCTTTATATGTTGAG+TGG + chr4_1:40894624-40894643 None:intergenic 30.0%
CTCATTCACTATTTCAATCA+AGG - chr4_1:40894755-40894774 Msa0547580:CDS 30.0%
GTCGAAAAAATTAAGTACAG+TGG + chr4_1:40894905-40894924 None:intergenic 30.0%
!! AAAATGATATTTTCAGGGTC+AGG + chr4_1:40895200-40895219 None:intergenic 30.0%
! GACCCTGAAAATATCATTTT+TGG - chr4_1:40895200-40895219 Msa0547580:CDS 30.0%
GAATTAATCACGTGATAGAT+TGG + chr4_1:40895307-40895326 None:intergenic 30.0%
TAAATCTGATTACCTGAAGT+TGG + chr4_1:40895395-40895414 None:intergenic 30.0%
ACCATTCAAATTTCATTCAG+TGG - chr4_1:40895436-40895455 Msa0547580:intron 30.0%
ACCACTGAATGAAATTTGAA+TGG + chr4_1:40895440-40895459 None:intergenic 30.0%
GATTATTAACTATAGGGCAT+CGG - chr4_1:40895489-40895508 Msa0547580:CDS 30.0%
ATTGAGAATATGGGTTTACT+TGG + chr4_1:40895750-40895769 None:intergenic 30.0%
AAGTAAACCCATATTCTCAA+TGG - chr4_1:40895749-40895768 Msa0547580:intron 30.0%
TCAACAACCATTGAGAATAT+GGG + chr4_1:40895759-40895778 None:intergenic 30.0%
TTCAACAACCATTGAGAATA+TGG + chr4_1:40895760-40895779 None:intergenic 30.0%
CGCAACTCCTTAAAATTATT+TGG - chr4_1:40895913-40895932 Msa0547580:intron 30.0%
! TCGATATCATGTTAGGTTTT+AGG - chr4_1:40896153-40896172 Msa0547580:intron 30.0%
! CGATATCATGTTAGGTTTTA+GGG - chr4_1:40896154-40896173 Msa0547580:intron 30.0%
CTATGGAAACTAATTCACAT+CGG - chr4_1:40896235-40896254 Msa0547580:intron 30.0%
TACTCTTGACATTGTTGAAG+AGG - chr4_1:40887128-40887147 Msa0547580:three_prime_UTR 35.0%
AATATACATACAGTAGAGCC+AGG + chr4_1:40887315-40887334 None:intergenic 35.0%
CAAAGTTAACCACTATGGTT+TGG + chr4_1:40887634-40887653 None:intergenic 35.0%
CAAACCATAGTGGTTAACTT+TGG - chr4_1:40887632-40887651 Msa0547580:three_prime_UTR 35.0%
AACTCCAAAGTTAACCACTA+TGG + chr4_1:40887639-40887658 None:intergenic 35.0%
GTTACCTTGCTTCAGATAAT+TGG + chr4_1:40888012-40888031 None:intergenic 35.0%
! CTTCACACTGTTGTTTGATT+GGG - chr4_1:40888053-40888072 Msa0547580:three_prime_UTR 35.0%
GATTGGGATAAGTAGTTTGA+AGG - chr4_1:40888069-40888088 Msa0547580:three_prime_UTR 35.0%
! TTGTGGTTTGATATTTCTGC+AGG - chr4_1:40888099-40888118 Msa0547580:three_prime_UTR 35.0%
ATGGTTGTATCATCAACTTG+AGG - chr4_1:40888166-40888185 Msa0547580:three_prime_UTR 35.0%
GTTGTACATGCTAATGGTTA+TGG - chr4_1:40888215-40888234 Msa0547580:three_prime_UTR 35.0%
CTTACTCTTAATGGAAGAGA+AGG - chr4_1:40888245-40888264 Msa0547580:three_prime_UTR 35.0%
GAAACCCATAATATCAGATC+CGG + chr4_1:40888288-40888307 None:intergenic 35.0%
GATCTGATATTATGGGTTTC+TGG - chr4_1:40888288-40888307 Msa0547580:three_prime_UTR 35.0%
!! ATATTATGGGTTTCTGGGAT+AGG - chr4_1:40888294-40888313 Msa0547580:three_prime_UTR 35.0%
TTTGTCCAAGAAATTTGGAC+TGG - chr4_1:40888446-40888465 Msa0547580:three_prime_UTR 35.0%
GCATTCATGGTATGGTAATT+GGG - chr4_1:40888500-40888519 Msa0547580:three_prime_UTR 35.0%
CATTCATGGTATGGTAATTG+GGG - chr4_1:40888501-40888520 Msa0547580:three_prime_UTR 35.0%
GGTAATTGGGGTTATGAATT+TGG - chr4_1:40888513-40888532 Msa0547580:three_prime_UTR 35.0%
GAGAAATAACAGACTGTACA+GGG + chr4_1:40888644-40888663 None:intergenic 35.0%
AGAGAAATAACAGACTGTAC+AGG + chr4_1:40888645-40888664 None:intergenic 35.0%
! AGATCTCTTCTCCTTTTTGT+TGG - chr4_1:40888704-40888723 Msa0547580:three_prime_UTR 35.0%
! CTTCTCCTTTTTGTTGGAAT+TGG - chr4_1:40888710-40888729 Msa0547580:three_prime_UTR 35.0%
! TTCAAAATTTTCGTAAGCCC+AGG - chr4_1:40888733-40888752 Msa0547580:three_prime_UTR 35.0%
TGACAAGGCAAACTCTTAAA+GGG - chr4_1:40888898-40888917 Msa0547580:three_prime_UTR 35.0%
GAAATCAGTTGCAAATGGAA+TGG - chr4_1:40888983-40889002 Msa0547580:three_prime_UTR 35.0%
GAATTCAATAGCACTAGATG+TGG + chr4_1:40889030-40889049 None:intergenic 35.0%
! CATCTAGTGCTATTGAATTC+AGG - chr4_1:40889030-40889049 Msa0547580:three_prime_UTR 35.0%
ATCAGAAATCACTTGCTCTT+TGG + chr4_1:40889181-40889200 None:intergenic 35.0%
ACCATATCCTAGAAGTTTCA+CGG + chr4_1:40889535-40889554 None:intergenic 35.0%
GTATACCCTAAAATTCCTTC+TGG - chr4_1:40889572-40889591 Msa0547580:intron 35.0%
ATACCCTAAAATTCCTTCTG+GGG - chr4_1:40889574-40889593 Msa0547580:intron 35.0%
TTGAACTTCAACTGTACCAT+TGG + chr4_1:40889604-40889623 None:intergenic 35.0%
AATGGTACAGTTGAAGTTCA+AGG - chr4_1:40889603-40889622 Msa0547580:intron 35.0%
CTCTTACATACAAACTTGGA+AGG + chr4_1:40889807-40889826 None:intergenic 35.0%
TGTTATGCTGGATTTATCCA+AGG - chr4_1:40890004-40890023 Msa0547580:intron 35.0%
AAATACTCAAGCTCTGTTCT+TGG - chr4_1:40890165-40890184 Msa0547580:intron 35.0%
GGTGACAGATAATTTGATCT+TGG + chr4_1:40890223-40890242 None:intergenic 35.0%
CAGATGGGTAATTATTTGGT+AGG - chr4_1:40890394-40890413 Msa0547580:intron 35.0%
AACCATGTATAAAGATGGTC+TGG - chr4_1:40890721-40890740 Msa0547580:intron 35.0%
TACCAGACCATCTTTATACA+TGG + chr4_1:40890726-40890745 None:intergenic 35.0%
TCAGAACCTATCTTCCTAAA+TGG + chr4_1:40890781-40890800 None:intergenic 35.0%
CAGAAATGATGAAACCATGT+AGG - chr4_1:40890941-40890960 Msa0547580:intron 35.0%
AAATGATGAAACCATGTAGG+AGG - chr4_1:40890944-40890963 Msa0547580:intron 35.0%
AATGATGAAACCATGTAGGA+GGG - chr4_1:40890945-40890964 Msa0547580:intron 35.0%
TAACTCTGATGAGAAAGAAG+TGG + chr4_1:40890991-40891010 None:intergenic 35.0%
GAGAGGATGCATTTGATTAA+GGG + chr4_1:40891068-40891087 None:intergenic 35.0%
TGAGAGGATGCATTTGATTA+AGG + chr4_1:40891069-40891088 None:intergenic 35.0%
CAATATTCCAGTACATTTGG+AGG + chr4_1:40891126-40891145 None:intergenic 35.0%
TCCTTAGTTGTTCTCAACAT+GGG - chr4_1:40891169-40891188 Msa0547580:intron 35.0%
CACACCAAAGAGGATTATAA+TGG + chr4_1:40891285-40891304 None:intergenic 35.0%
CATTATAATCCTCTTTGGTG+TGG - chr4_1:40891283-40891302 Msa0547580:intron 35.0%
AATACCCATTTGCAGCAAAT+AGG - chr4_1:40891306-40891325 Msa0547580:intron 35.0%
!! AAAAGCACTCATAGGCTTTA+TGG - chr4_1:40891436-40891455 Msa0547580:intron 35.0%
! AAAGCACTCATAGGCTTTAT+GGG - chr4_1:40891437-40891456 Msa0547580:intron 35.0%
TATGGGAGGTGAAATAATCA+AGG - chr4_1:40891454-40891473 Msa0547580:intron 35.0%
TAAGTTGCAATTCAGGTCAT+AGG + chr4_1:40891490-40891509 None:intergenic 35.0%
ACAGTCATAAGTTGCAATTC+AGG + chr4_1:40891497-40891516 None:intergenic 35.0%
TGCAACTTATGACTGTTGTA+CGG - chr4_1:40891501-40891520 Msa0547580:intron 35.0%
TTATAACTGTTGTATGGCCT+TGG - chr4_1:40891548-40891567 Msa0547580:intron 35.0%
GAGAAATGCATAATCCCAAT+AGG - chr4_1:40891701-40891720 Msa0547580:intron 35.0%
AGTATGTTCAAACTAATCGG+GGG + chr4_1:40891853-40891872 None:intergenic 35.0%
CTATCAGCAATTCAAAACCA+TGG + chr4_1:40891903-40891922 None:intergenic 35.0%
ATGCATTCGCTAGATTTAGT+TGG + chr4_1:40891964-40891983 None:intergenic 35.0%
GTACTATATAAACCCAGTAG+TGG - chr4_1:40891997-40892016 Msa0547580:intron 35.0%
TTAATATACAGGGACTTGTG+GGG + chr4_1:40892040-40892059 None:intergenic 35.0%
CCCCTCTGTAATTAATATAC+AGG + chr4_1:40892051-40892070 None:intergenic 35.0%
GTACAATACACCAAAATGGT+GGG + chr4_1:40892217-40892236 None:intergenic 35.0%
ATGCGTTGTAAATCAGAACT+TGG - chr4_1:40892379-40892398 Msa0547580:intron 35.0%
GTTGTAAATCAGAACTTGGA+TGG - chr4_1:40892383-40892402 Msa0547580:intron 35.0%
AAACTACTTGAAATCCAGTC+AGG - chr4_1:40892439-40892458 Msa0547580:intron 35.0%
AACTACTTGAAATCCAGTCA+GGG - chr4_1:40892440-40892459 Msa0547580:intron 35.0%
GATCATCTAGAAAGAAGAGA+GGG + chr4_1:40892466-40892485 None:intergenic 35.0%
!! GTATGTTCTAAAACATGGTC+AGG + chr4_1:40892489-40892508 None:intergenic 35.0%
!! GTAGTTTTACTCAAGCTTGT+AGG - chr4_1:40892542-40892561 Msa0547580:intron 35.0%
TTGGTTGCAGTTAGTTACAA+GGG + chr4_1:40892601-40892620 None:intergenic 35.0%
TTTGGTTGCAGTTAGTTACA+AGG + chr4_1:40892602-40892621 None:intergenic 35.0%
TGACGGAAAAATTTGCATTG+GGG + chr4_1:40892793-40892812 None:intergenic 35.0%
! GTGACGGAAAAATTTGCATT+GGG + chr4_1:40892794-40892813 None:intergenic 35.0%
! TGTGACGGAAAAATTTGCAT+TGG + chr4_1:40892795-40892814 None:intergenic 35.0%
! CAAATTTTTCCGTCACATAC+CGG - chr4_1:40892798-40892817 Msa0547580:intron 35.0%
CTCAGAAATTGAAGACCAAA+GGG + chr4_1:40892847-40892866 None:intergenic 35.0%
TCTCAGAAATTGAAGACCAA+AGG + chr4_1:40892848-40892867 None:intergenic 35.0%
! AATTGGACTCTGAAAACTAC+AGG - chr4_1:40892868-40892887 Msa0547580:intron 35.0%
! AGCTTATGAGCTTTAATCAC+AGG + chr4_1:40892899-40892918 None:intergenic 35.0%
GATGCATTTCACAGTATCTA+AGG + chr4_1:40892941-40892960 None:intergenic 35.0%
AAATTTCGGAAGATCTACAC+AGG + chr4_1:40892980-40892999 None:intergenic 35.0%
CCATAGCCCTCAATAAATTT+CGG + chr4_1:40892994-40893013 None:intergenic 35.0%
! CTATTTGGAGTTGTGTAAAG+AGG + chr4_1:40893150-40893169 None:intergenic 35.0%
! GGAAATGAGTAGTTGCTATT+TGG + chr4_1:40893165-40893184 None:intergenic 35.0%
ATAGCAACTACTCATTTCCT+TGG - chr4_1:40893166-40893185 Msa0547580:intron 35.0%
!! ATGAATGTTTTGGGCATTTG+TGG + chr4_1:40893482-40893501 None:intergenic 35.0%
! ATCTGATCTTTTCCTTCGAA+TGG + chr4_1:40893514-40893533 None:intergenic 35.0%
TTTGTTTATACCGGTCAATC+TGG - chr4_1:40893555-40893574 Msa0547580:three_prime_UTR 35.0%
! AAATGCTACATCCTTTTCCA+TGG + chr4_1:40893611-40893630 None:intergenic 35.0%
ATCTCATGAAGTTGTACCAA+TGG + chr4_1:40893706-40893725 None:intergenic 35.0%
! TCCAACATACCACATTTTAG+AGG - chr4_1:40893772-40893791 Msa0547580:three_prime_UTR 35.0%
! CCAACATACCACATTTTAGA+GGG - chr4_1:40893773-40893792 Msa0547580:three_prime_UTR 35.0%
!!! TCGTTTTTCCCTCTAAAATG+TGG + chr4_1:40893784-40893803 None:intergenic 35.0%
! GAAAGAAGAGGAAGGATTTT+GGG - chr4_1:40893872-40893891 Msa0547580:CDS 35.0%
! AAAGAAGAGGAAGGATTTTG+GGG - chr4_1:40893873-40893892 Msa0547580:CDS 35.0%
GATATAGTTTCCCAAAAGGT+AGG + chr4_1:40893917-40893936 None:intergenic 35.0%
!!! TTTTTTCAGTTCCTCCAAAC+TGG + chr4_1:40893952-40893971 None:intergenic 35.0%
CCCACCCAAAAAAAAAAATC+AGG - chr4_1:40894114-40894133 Msa0547580:CDS 35.0%
!!! CCATTTTATTTCATTGGCTC+TGG + chr4_1:40894542-40894561 None:intergenic 35.0%
CCAGAGCCAATGAAATAAAA+TGG - chr4_1:40894539-40894558 Msa0547580:CDS 35.0%
!! GAAAAGAAGTTGGTACAGTA+AGG + chr4_1:40894576-40894595 None:intergenic 35.0%
CTTCGTGATATTAAAGTCCA+TGG + chr4_1:40894724-40894743 None:intergenic 35.0%
ATCCTACCTAGAATAAAGAG+AGG - chr4_1:40894792-40894811 Msa0547580:CDS 35.0%
TCCTACCTAGAATAAAGAGA+GGG - chr4_1:40894793-40894812 Msa0547580:CDS 35.0%
CTGCTACAAAAGGGATATTA+TGG + chr4_1:40894880-40894899 None:intergenic 35.0%
GAGAGAAGAAAAAGAGAAGA+GGG + chr4_1:40894972-40894991 None:intergenic 35.0%
TGAGAGAAGAAAAAGAGAAG+AGG + chr4_1:40894973-40894992 None:intergenic 35.0%
GTTAGACTGTTACAGGAATT+AGG - chr4_1:40895165-40895184 Msa0547580:CDS 35.0%
ATTCACAATCTTAACCACAG+TGG - chr4_1:40895323-40895342 Msa0547580:CDS 35.0%
ATGACTCAAATTCCAACTTC+AGG - chr4_1:40895380-40895399 Msa0547580:intron 35.0%
CAGGTAATCAGATTTAGACT+AGG - chr4_1:40895399-40895418 Msa0547580:intron 35.0%
GTTTATTGCAGTCAATAGCT+TGG + chr4_1:40895464-40895483 None:intergenic 35.0%
!!! GAAAAGCTTTTTAGGATGCA+TGG + chr4_1:40895728-40895747 None:intergenic 35.0%
!! ACTTGATTTGTTGCTTTAGC+AGG + chr4_1:40895877-40895896 None:intergenic 35.0%
!! GGCAGAAATCTTTAGGTTTT+TGG - chr4_1:40895934-40895953 Msa0547580:intron 35.0%
ACTATTGCGATTGTGATCTA+GGG + chr4_1:40896128-40896147 None:intergenic 35.0%
GTCAACTTCGATATCATGTT+AGG - chr4_1:40896146-40896165 Msa0547580:intron 35.0%
GATTGCAAACTCAAGAACTA+TGG - chr4_1:40896218-40896237 Msa0547580:intron 35.0%
TTAACGATCCGATCTTAGAT+CGG + chr4_1:40896289-40896308 None:intergenic 35.0%
AATCACACATCTACACATTC+GGG + chr4_1:40896382-40896401 None:intergenic 35.0%
CAATCACACATCTACACATT+CGG + chr4_1:40896383-40896402 None:intergenic 35.0%
CATTGATGAACACTAATCAC+AGG + chr4_1:40896504-40896523 None:intergenic 35.0%
GAGAAGAATGCTTAGCTTAT+TGG - chr4_1:40896801-40896820 Msa0547580:CDS 35.0%
!! CTTCTTTTGACTCGCTTAGT+GGG + chr4_1:40886886-40886905 None:intergenic 40.0%
!! TCTTCTTTTGACTCGCTTAG+TGG + chr4_1:40886887-40886906 None:intergenic 40.0%
TTGCATGATCAGACAGAAAC+CGG + chr4_1:40887005-40887024 None:intergenic 40.0%
ATCAGAGAAGGAAAAAGCTC+AGG + chr4_1:40887042-40887061 None:intergenic 40.0%
!! TTTTTCCTTCTCTGATGACG+TGG - chr4_1:40887046-40887065 Msa0547580:three_prime_UTR 40.0%
TTGTTTCGTGTTGGAGAAGT+TGG - chr4_1:40887075-40887094 Msa0547580:three_prime_UTR 40.0%
TTGTTGAAGAGGATGTTACG+AGG - chr4_1:40887139-40887158 Msa0547580:three_prime_UTR 40.0%
TGTGATCAATGTCGTGTTGT+TGG - chr4_1:40887177-40887196 Msa0547580:three_prime_UTR 40.0%
GAATCGTTGAGTCAGATTCT+CGG - chr4_1:40887206-40887225 Msa0547580:three_prime_UTR 40.0%
AAAGTCAGACCAAACCATAG+TGG - chr4_1:40887622-40887641 Msa0547580:three_prime_UTR 40.0%
!! GGTTGGTGGATATGGAATTA+TGG - chr4_1:40887826-40887845 Msa0547580:three_prime_UTR 40.0%
AGGTCTTTGATATGCTGCAT+TGG + chr4_1:40887966-40887985 None:intergenic 40.0%
CAAAGACCTTGCACTAAATG+TGG - chr4_1:40887977-40887996 Msa0547580:three_prime_UTR 40.0%
CTTGCTTCAGATAATTGGAG+AGG + chr4_1:40888007-40888026 None:intergenic 40.0%
! CTCTCCAATTATCTGAAGCA+AGG - chr4_1:40888005-40888024 Msa0547580:three_prime_UTR 40.0%
CAAACAACAGTGTGAAGGTA+AGG + chr4_1:40888050-40888069 None:intergenic 40.0%
CCAATCAAACAACAGTGTGA+AGG + chr4_1:40888055-40888074 None:intergenic 40.0%
! CCTTCACACTGTTGTTTGAT+TGG - chr4_1:40888052-40888071 Msa0547580:three_prime_UTR 40.0%
CATTTCTGCTGATGATCTTG+AGG - chr4_1:40888142-40888161 Msa0547580:three_prime_UTR 40.0%
AACAACACACATCTTCTGCA+TGG - chr4_1:40888191-40888210 Msa0547580:three_prime_UTR 40.0%
!! CATGGTGTTGTACATGCTAA+TGG - chr4_1:40888209-40888228 Msa0547580:three_prime_UTR 40.0%
GGTCACTTGCTTACTCTTAA+TGG - chr4_1:40888236-40888255 Msa0547580:three_prime_UTR 40.0%
ACTCTTAATGGAAGAGAAGG+TGG - chr4_1:40888248-40888267 Msa0547580:three_prime_UTR 40.0%
TCTCTCCGGATCTGATATTA+TGG - chr4_1:40888280-40888299 Msa0547580:three_prime_UTR 40.0%
CTCTCCGGATCTGATATTAT+GGG - chr4_1:40888281-40888300 Msa0547580:three_prime_UTR 40.0%
! TTTGTGCTGCTATGTCTGTT+AGG - chr4_1:40888318-40888337 Msa0547580:three_prime_UTR 40.0%
TTACAGGAAGGTTACTGTGA+TGG - chr4_1:40888422-40888441 Msa0547580:three_prime_UTR 40.0%
GGCATTCATGGTATGGTAAT+TGG - chr4_1:40888499-40888518 Msa0547580:three_prime_UTR 40.0%
TACCGAAGATGCATACAAGA+TGG - chr4_1:40888554-40888573 Msa0547580:three_prime_UTR 40.0%
GTGACAAGGCAAACTCTTAA+AGG - chr4_1:40888897-40888916 Msa0547580:three_prime_UTR 40.0%
GACAAGGCAAACTCTTAAAG+GGG - chr4_1:40888899-40888918 Msa0547580:three_prime_UTR 40.0%
CAAGGGAAATCAGTTGCAAA+TGG - chr4_1:40888978-40888997 Msa0547580:three_prime_UTR 40.0%
GCAATGGAGCTTAATCCATT+AGG + chr4_1:40889147-40889166 None:intergenic 40.0%
GAAATCACTTGCTCTTTGGA+AGG + chr4_1:40889177-40889196 None:intergenic 40.0%
CTTACAGTCAAGAAGCTTTC+TGG + chr4_1:40889292-40889311 None:intergenic 40.0%
CAAAATCGAGCAAATGACCT+CGG - chr4_1:40889329-40889348 Msa0547580:intron 40.0%
AAAGGCAGCACAATTAACTC+AGG + chr4_1:40889432-40889451 None:intergenic 40.0%
! GACCTTTTGAATGAAGTCAC+TGG - chr4_1:40889468-40889487 Msa0547580:intron 40.0%
CACCAGTGACTTCATTCAAA+AGG + chr4_1:40889473-40889492 None:intergenic 40.0%
TTTGTAGCCGTGAAACTTCT+AGG - chr4_1:40889525-40889544 Msa0547580:intron 40.0%
TTAGGGTATACACACGATCT+CGG + chr4_1:40889563-40889582 None:intergenic 40.0%
! TGACCCCAGAAGGAATTTTA+GGG + chr4_1:40889580-40889599 None:intergenic 40.0%
! TTGACCCCAGAAGGAATTTT+AGG + chr4_1:40889581-40889600 None:intergenic 40.0%
!!! GTGCTAAGCCATTTTTAGCT+GGG + chr4_1:40889635-40889654 None:intergenic 40.0%
TGACTGCATTTGTGGTACTA+AGG - chr4_1:40889692-40889711 Msa0547580:intron 40.0%
TGTGGTACTAAGGATGATGA+TGG - chr4_1:40889702-40889721 Msa0547580:intron 40.0%
!! CTAAGGATGATGATGGAGAA+AGG - chr4_1:40889709-40889728 Msa0547580:intron 40.0%
ATGTTAGCATGTGATACCTG+TGG - chr4_1:40889732-40889751 Msa0547580:intron 40.0%
ATGTGTTAACTCAATCCGTG+TGG - chr4_1:40889827-40889846 Msa0547580:intron 40.0%
TGTGTTAACTCAATCCGTGT+GGG - chr4_1:40889828-40889847 Msa0547580:intron 40.0%
CACATATTGCAGAGATGAAG+CGG - chr4_1:40889875-40889894 Msa0547580:intron 40.0%
AATCTCTGGTACAGAATCCT+TGG + chr4_1:40890024-40890043 None:intergenic 40.0%
! AACTGTCTGGAATCAATCTC+TGG + chr4_1:40890038-40890057 None:intergenic 40.0%
AGAGACAAAGTTCAACTGTC+TGG + chr4_1:40890051-40890070 None:intergenic 40.0%
TGTGTAAGACTTCCACAAAG+TGG + chr4_1:40890460-40890479 None:intergenic 40.0%
!!! GGTTTTAGAACTGCAGTTTC+TGG + chr4_1:40890697-40890716 None:intergenic 40.0%
GGTTTCATGAATTTGGCTAC+TGG + chr4_1:40890760-40890779 None:intergenic 40.0%
!!! GGTTTCATGATTTTGGCTAC+TGG + chr4_1:40890853-40890872 None:intergenic 40.0%
TCGGAGCATATCTTCATACA+TGG + chr4_1:40890874-40890893 None:intergenic 40.0%
ATGATGAAACCATGTAGGAG+GGG - chr4_1:40890946-40890965 Msa0547580:intron 40.0%
GAAGTGGAGAACATGAGAAA+TGG + chr4_1:40890975-40890994 None:intergenic 40.0%
ACATTTGGAGGAAAAGGGTT+GGG + chr4_1:40891114-40891133 None:intergenic 40.0%
TACATTTGGAGGAAAAGGGT+TGG + chr4_1:40891115-40891134 None:intergenic 40.0%
CCAGTACATTTGGAGGAAAA+GGG + chr4_1:40891119-40891138 None:intergenic 40.0%
TCCAGTACATTTGGAGGAAA+AGG + chr4_1:40891120-40891139 None:intergenic 40.0%
TATTGTTGGCCAAGAAGTTC+AGG - chr4_1:40891141-40891160 Msa0547580:intron 40.0%
GTCCTTAGTTGTTCTCAACA+TGG - chr4_1:40891168-40891187 Msa0547580:intron 40.0%
CCTTAGTTGTTCTCAACATG+GGG - chr4_1:40891170-40891189 Msa0547580:intron 40.0%
TAGTGGTAACCTTTGCAACT+AGG - chr4_1:40891235-40891254 Msa0547580:intron 40.0%
! AGCTCCTATTTGCTGCAAAT+GGG + chr4_1:40891313-40891332 None:intergenic 40.0%
!! ATCTGGAGAAAAGCACTCAT+AGG - chr4_1:40891428-40891447 Msa0547580:intron 40.0%
! GTGTCTGTTTTCTTTTGCCA+GGG + chr4_1:40891527-40891546 None:intergenic 40.0%
! TGTGTCTGTTTTCTTTTGCC+AGG + chr4_1:40891528-40891547 None:intergenic 40.0%
! ATGGCCTTGGCAAAAGAAAA+CGG - chr4_1:40891561-40891580 Msa0547580:intron 40.0%
AGGATTATTGTGGAAGAGTG+TGG - chr4_1:40891616-40891635 Msa0547580:intron 40.0%
AAGTGGGAAGTCTATTGATG+AGG - chr4_1:40891667-40891686 Msa0547580:intron 40.0%
GCATAATCCCAATAGGCAAA+AGG - chr4_1:40891708-40891727 Msa0547580:intron 40.0%
GTATGTTCAAACTAATCGGG+GGG + chr4_1:40891852-40891871 None:intergenic 40.0%
TCTAGCGAATGCATCAACAA+AGG - chr4_1:40891970-40891989 Msa0547580:intron 40.0%
!! AAACCCAGTAGTGGATGTAA+AGG - chr4_1:40892006-40892025 Msa0547580:intron 40.0%
!! AACCCAGTAGTGGATGTAAA+GGG - chr4_1:40892007-40892026 Msa0547580:intron 40.0%
!! TAATTACAGAGGGGCACTAT+AGG - chr4_1:40892057-40892076 Msa0547580:intron 40.0%
GTGGTACTAGATGAATGAGA+GGG - chr4_1:40892079-40892098 Msa0547580:intron 40.0%
! ATATGCACTTCCTGTCGTTT+GGG + chr4_1:40892121-40892140 None:intergenic 40.0%
TATATGCACTTCCTGTCGTT+TGG + chr4_1:40892122-40892141 None:intergenic 40.0%
CGTACAATACACCAAAATGG+TGG + chr4_1:40892218-40892237 None:intergenic 40.0%
CTGCGTACAATACACCAAAA+TGG + chr4_1:40892221-40892240 None:intergenic 40.0%
CAGCCTCTTGTGTAAAAAAC+AGG + chr4_1:40892250-40892269 None:intergenic 40.0%
GGATCATCTAGAAAGAAGAG+AGG + chr4_1:40892467-40892486 None:intergenic 40.0%
ACTGACACATGTCAGTCATT+TGG + chr4_1:40892620-40892639 None:intergenic 40.0%
GTCAAGCTATTTATGAGGCT+AGG + chr4_1:40892655-40892674 None:intergenic 40.0%
AAAATTTGCATTGGGGTCGT+TGG + chr4_1:40892786-40892805 None:intergenic 40.0%
AGAAATTGAAGACCAAAGGG+AGG + chr4_1:40892844-40892863 None:intergenic 40.0%
CCGAAATTTATTGAGGGCTA+TGG - chr4_1:40892991-40893010 Msa0547580:intron 40.0%
!! TAAAGCAGATGGAAGCATCA+TGG + chr4_1:40893091-40893110 None:intergenic 40.0%
!! ATACAAGAAGGTGTTTGCCA+AGG + chr4_1:40893243-40893262 None:intergenic 40.0%
ATGGAGAACATGCCTTGATA+AGG + chr4_1:40893318-40893337 None:intergenic 40.0%
AGATTGAGGAGATGCCATAA+GGG + chr4_1:40893379-40893398 None:intergenic 40.0%
! GAATTTTCAGCAAGCATCTG+AGG + chr4_1:40893405-40893424 None:intergenic 40.0%
!! CATCACTTTTCACCATTCGA+AGG - chr4_1:40893499-40893518 Msa0547580:intron 40.0%
GATCAGATCATATTTGGCAG+TGG - chr4_1:40893526-40893545 Msa0547580:three_prime_UTR 40.0%
!! CCCTCTAAAATGTGGTATGT+TGG + chr4_1:40893776-40893795 None:intergenic 40.0%
AAAGACCATGCCTTTCGTTT+GGG - chr4_1:40893839-40893858 Msa0547580:exon 40.0%
TAAATCCCAAACGAAAGGCA+TGG + chr4_1:40893847-40893866 None:intergenic 40.0%
! ATGCCTTTCGTTTGGGATTT+AGG - chr4_1:40893846-40893865 Msa0547580:CDS 40.0%
CTTCCTAAATCCCAAACGAA+AGG + chr4_1:40893852-40893871 None:intergenic 40.0%
! CTTTCGTTTGGGATTTAGGA+AGG - chr4_1:40893850-40893869 Msa0547580:CDS 40.0%
GGATTTAGGAAGGAAAGAAG+AGG - chr4_1:40893860-40893879 Msa0547580:CDS 40.0%
TTAGGAAGGAAAGAAGAGGA+AGG - chr4_1:40893864-40893883 Msa0547580:CDS 40.0%
! GGAAAGAAGAGGAAGGATTT+TGG - chr4_1:40893871-40893890 Msa0547580:CDS 40.0%
! TCTTTTCAGATCCACCAGTT+TGG - chr4_1:40893935-40893954 Msa0547580:CDS 40.0%
!!! TCTATATCCTTTTGAGGCGA+AGG + chr4_1:40894081-40894100 None:intergenic 40.0%
GTTGTGGGTTTGAGTCATAA+GGG - chr4_1:40894449-40894468 Msa0547580:CDS 40.0%
TTGTGGGTTTGAGTCATAAG+GGG - chr4_1:40894450-40894469 Msa0547580:CDS 40.0%
TTTGAGTCATAAGGGGTAAG+TGG - chr4_1:40894457-40894476 Msa0547580:CDS 40.0%
TGGTTCAAGGGAAAAGAAGT+TGG + chr4_1:40894586-40894605 None:intergenic 40.0%
TGTCTTGGTAAGTGGTTCAA+GGG + chr4_1:40894598-40894617 None:intergenic 40.0%
TTGTCTTGGTAAGTGGTTCA+AGG + chr4_1:40894599-40894618 None:intergenic 40.0%
TATGTTGAGTGGAGTTGTCT+TGG + chr4_1:40894613-40894632 None:intergenic 40.0%
!! ATGGATACTCTATAGTGGGT+GGG + chr4_1:40894705-40894724 None:intergenic 40.0%
GTCCATGGATACTCTATAGT+GGG + chr4_1:40894709-40894728 None:intergenic 40.0%
AGTCCATGGATACTCTATAG+TGG + chr4_1:40894710-40894729 None:intergenic 40.0%
CCTACCTAGAATAAAGAGAG+GGG - chr4_1:40894794-40894813 Msa0547580:CDS 40.0%
TCAACCCCTCTCTTTATTCT+AGG + chr4_1:40894801-40894820 None:intergenic 40.0%
GGGGTTGAAAAATGATAAGC+CGG - chr4_1:40894813-40894832 Msa0547580:CDS 40.0%
GGGTTGAAAAATGATAAGCC+GGG - chr4_1:40894814-40894833 Msa0547580:CDS 40.0%
TTGTCTGCATAACCCTTGAA+GGG + chr4_1:40895016-40895035 None:intergenic 40.0%
ATTGTCTGCATAACCCTTGA+AGG + chr4_1:40895017-40895036 None:intergenic 40.0%
GGTTATGCAGACAATGTGAT+GGG - chr4_1:40895022-40895041 Msa0547580:CDS 40.0%
TCACGTGATAGATTGGAAGT+TGG + chr4_1:40895300-40895319 None:intergenic 40.0%
CCAATTTATTGATGCCACTG+TGG + chr4_1:40895340-40895359 None:intergenic 40.0%
CCACAGTGGCATCAATAAAT+TGG - chr4_1:40895337-40895356 Msa0547580:CDS 40.0%
GACTATTGCGATTGTGATCT+AGG + chr4_1:40896129-40896148 None:intergenic 40.0%
TCACATCGGAATCACACATT+CGG - chr4_1:40896249-40896268 Msa0547580:intron 40.0%
! CAGACGTTCAGATTCTAGTT+AGG + chr4_1:40896334-40896353 None:intergenic 40.0%
CATCTACACATTCGGGATAT+TGG + chr4_1:40896375-40896394 None:intergenic 40.0%
GTAATTCTGTAACCTAGCTC+TGG + chr4_1:40896428-40896447 None:intergenic 40.0%
CAACAGTTTCGTCAACATCA+AGG + chr4_1:40896885-40896904 None:intergenic 40.0%
GGTTTCTGTCTGATCATGCA+AGG - chr4_1:40887004-40887023 Msa0547580:three_prime_UTR 45.0%
AGAGAAGGAAAAAGCTCAGG+AGG + chr4_1:40887039-40887058 None:intergenic 45.0%
! TGGCAGATCTTGTTTCGTGT+TGG - chr4_1:40887066-40887085 Msa0547580:three_prime_UTR 45.0%
AGGTGATGTTTCGTCTGGTT+TGG - chr4_1:40887104-40887123 Msa0547580:three_prime_UTR 45.0%
GAGTCAGATTCTCGGTTCTT+AGG - chr4_1:40887214-40887233 Msa0547580:three_prime_UTR 45.0%
TGATGTGGGATCATGTGATG+TGG - chr4_1:40887801-40887820 Msa0547580:three_prime_UTR 45.0%
GATCATGTGATGTGGTTGGT+TGG - chr4_1:40887809-40887828 Msa0547580:three_prime_UTR 45.0%
!! ATGTGGTTGGTTGGTGGATA+TGG - chr4_1:40887818-40887837 Msa0547580:three_prime_UTR 45.0%
TGATATCGCTTTCGACACAC+AGG + chr4_1:40887917-40887936 None:intergenic 45.0%
GGAGTTCCACATTTAGTGCA+AGG + chr4_1:40887986-40888005 None:intergenic 45.0%
CTGCTGATGATCTTGAGGAA+TGG - chr4_1:40888147-40888166 Msa0547580:three_prime_UTR 45.0%
TTGCTTCATGCAATTGCCAG+AGG - chr4_1:40888477-40888496 Msa0547580:three_prime_UTR 45.0%
TGCTTCATGCAATTGCCAGA+GGG - chr4_1:40888478-40888497 Msa0547580:three_prime_UTR 45.0%
! TGGGGTTATGAATTTGGGAC+TGG - chr4_1:40888519-40888538 Msa0547580:three_prime_UTR 45.0%
CGCCATCTTGTATGCATCTT+CGG + chr4_1:40888559-40888578 None:intergenic 45.0%
CGAAGATGCATACAAGATGG+CGG - chr4_1:40888557-40888576 Msa0547580:three_prime_UTR 45.0%
TGGAACGATAATGAGGACAG+GGG + chr4_1:40888603-40888622 None:intergenic 45.0%
CTGGAACGATAATGAGGACA+GGG + chr4_1:40888604-40888623 None:intergenic 45.0%
TCGATCCTGGAACGATAATG+AGG + chr4_1:40888610-40888629 None:intergenic 45.0%
TCATTATCGTTCCAGGATCG+AGG - chr4_1:40888609-40888628 Msa0547580:three_prime_UTR 45.0%
ACAGACTGTACAGGGTTATG+AGG + chr4_1:40888636-40888655 None:intergenic 45.0%
GTTCAGTTTCAGCCAATGAC+TGG + chr4_1:40888671-40888690 None:intergenic 45.0%
GACGAGAAATGATGTCGAAG+AGG - chr4_1:40888815-40888834 Msa0547580:three_prime_UTR 45.0%
TGCATCAAGTGCCTGTAATG+AGG - chr4_1:40888866-40888885 Msa0547580:three_prime_UTR 45.0%
TGCCTGTAATGAGGCCAAAT+GGG - chr4_1:40888875-40888894 Msa0547580:three_prime_UTR 45.0%
AGTTTGCCTTGTCACCCATT+TGG + chr4_1:40888892-40888911 None:intergenic 45.0%
CAAACTCTTAAAGGGGCAGT+GGG - chr4_1:40888906-40888925 Msa0547580:three_prime_UTR 45.0%
TTCGGTCTTAAGCACTTGCA+AGG - chr4_1:40888960-40888979 Msa0547580:three_prime_UTR 45.0%
TCGGTCTTAAGCACTTGCAA+GGG - chr4_1:40888961-40888980 Msa0547580:three_prime_UTR 45.0%
! AGATTGGCTCATGTGCCTAA+TGG - chr4_1:40889129-40889148 Msa0547580:intron 45.0%
! TTTGGAAGGATGGCTTGCAA+TGG + chr4_1:40889163-40889182 None:intergenic 45.0%
! TCACTTGCTCTTTGGAAGGA+TGG + chr4_1:40889173-40889192 None:intergenic 45.0%
TGCCTTCAGCTCTTAAGATC+TGG - chr4_1:40889355-40889374 Msa0547580:intron 45.0%
CACCAGATCTTAAGAGCTGA+AGG + chr4_1:40889360-40889379 None:intergenic 45.0%
! ATGGGTGGTCTTCTTTAGGA+TGG + chr4_1:40889401-40889420 None:intergenic 45.0%
!! GCCGTGAAACTTCTAGGATA+TGG - chr4_1:40889531-40889550 Msa0547580:intron 45.0%
TAGGGTATACACACGATCTC+GGG + chr4_1:40889562-40889581 None:intergenic 45.0%
GGAGAATGCCCAGCTAAAAA+TGG - chr4_1:40889624-40889643 Msa0547580:intron 45.0%
!!! CGTGCTAAGCCATTTTTAGC+TGG + chr4_1:40889636-40889655 None:intergenic 45.0%
CTTCTGTTCCTCTCTCCATT+CGG + chr4_1:40889662-40889681 None:intergenic 45.0%
TGGAGAGAGGAACAGAAGAA+TGG - chr4_1:40889664-40889683 Msa0547580:intron 45.0%
GAGAGGAACAGAAGAATGGA+AGG - chr4_1:40889668-40889687 Msa0547580:intron 45.0%
TGGAAGGTTGACTGCATTTG+TGG - chr4_1:40889684-40889703 Msa0547580:intron 45.0%
ACTGTCAATTCCAGCACATC+TGG + chr4_1:40889772-40889791 None:intergenic 45.0%
!! CTGGAATTGACAGTGCTGAT+GGG - chr4_1:40889778-40889797 Msa0547580:intron 45.0%
ATATTGCAGAGATGAAGCGG+TGG - chr4_1:40889878-40889897 Msa0547580:intron 45.0%
AGGGCAGTTATATGGCATCA+TGG + chr4_1:40890244-40890263 None:intergenic 45.0%
CTTACACAAGTGCAGTGCAT+CGG - chr4_1:40890472-40890491 Msa0547580:intron 45.0%
AAATGGTTTCCCCTCCTACA+TGG + chr4_1:40890958-40890977 None:intergenic 45.0%
! CCCTTTTCCTCCAAATGTAC+TGG - chr4_1:40891116-40891135 Msa0547580:intron 45.0%
AGGACAACTCCTGAACTTCT+TGG + chr4_1:40891153-40891172 None:intergenic 45.0%
CCCCATGTTGAGAACAACTA+AGG + chr4_1:40891173-40891192 None:intergenic 45.0%
TAAGGCTTGCCTAGTTGCAA+AGG + chr4_1:40891247-40891266 None:intergenic 45.0%
ATGGGTATTCCACACCAAAG+AGG + chr4_1:40891295-40891314 None:intergenic 45.0%
! GAGCTCCTATTTGCTGCAAA+TGG + chr4_1:40891314-40891333 None:intergenic 45.0%
CAAATAGGAGCTCTGTCAAG+AGG - chr4_1:40891321-40891340 Msa0547580:intron 45.0%
CATTGCTCCAGAACAAAACC+TGG + chr4_1:40891362-40891381 None:intergenic 45.0%
! TGGCCTTGGCAAAAGAAAAC+GGG - chr4_1:40891562-40891581 Msa0547580:intron 45.0%
! TTGTGGAAGAGTGTGGTGTA+AGG - chr4_1:40891623-40891642 Msa0547580:intron 45.0%
! AGCTCTGCCTTTTGCCTATT+GGG + chr4_1:40891718-40891737 None:intergenic 45.0%
! ACATTGTGGTAGTGAGTGTG+AGG - chr4_1:40891771-40891790 Msa0547580:intron 45.0%
CTCCCTTTACATCCACTACT+GGG + chr4_1:40892012-40892031 None:intergenic 45.0%
GGTGGTACTAGATGAATGAG+AGG - chr4_1:40892078-40892097 Msa0547580:intron 45.0%
ACTAAAGCTCTTGCATACGC+AGG - chr4_1:40892178-40892197 Msa0547580:intron 45.0%
CTAAAGCTCTTGCATACGCA+GGG - chr4_1:40892179-40892198 Msa0547580:intron 45.0%
! TTACACAAGAGGCTGTTTCC+AGG - chr4_1:40892255-40892274 Msa0547580:intron 45.0%
GTTGTTGTCACGTGACTGAA+AGG + chr4_1:40892295-40892314 None:intergenic 45.0%
CTTGGATGGGCAAATCTAGA+AGG - chr4_1:40892397-40892416 Msa0547580:intron 45.0%
CAGGGGTCAAGCTATTTATG+AGG + chr4_1:40892660-40892679 None:intergenic 45.0%
TAGTACTGCGGAGTAGAGTA+TGG + chr4_1:40893276-40893295 None:intergenic 45.0%
TACTCTACTCCGCAGTACTA+TGG - chr4_1:40893276-40893295 Msa0547580:intron 45.0%
!! TGATAAGGCATAGCTCTGGA+GGG + chr4_1:40893303-40893322 None:intergenic 45.0%
!! TTGATAAGGCATAGCTCTGG+AGG + chr4_1:40893304-40893323 None:intergenic 45.0%
TCCAGAGCTATGCCTTATCA+AGG - chr4_1:40893303-40893322 Msa0547580:intron 45.0%
GATTGAGGAGATGCCATAAG+GGG + chr4_1:40893378-40893397 None:intergenic 45.0%
GAGATTGAGGAGATGCCATA+AGG + chr4_1:40893380-40893399 None:intergenic 45.0%
!! ACACTACTAGCTCTGTGAAC+TGG - chr4_1:40893427-40893446 Msa0547580:intron 45.0%
TTTGGGCATTTGTGGTCACA+TGG + chr4_1:40893474-40893493 None:intergenic 45.0%
AAAGCAGAGCTCATCATCGA+GGG + chr4_1:40893683-40893702 None:intergenic 45.0%
TGATGAGCTCTGCTTTCCAT+TGG - chr4_1:40893687-40893706 Msa0547580:three_prime_UTR 45.0%
CAAAGACCATGCCTTTCGTT+TGG - chr4_1:40893838-40893857 Msa0547580:exon 45.0%
!!! AGGAAGGATTTTGGGGTGAA+AGG - chr4_1:40893880-40893899 Msa0547580:CDS 45.0%
!!! GGAAGGATTTTGGGGTGAAA+GGG - chr4_1:40893881-40893900 Msa0547580:CDS 45.0%
! AGGATTGCTCCCTACCTTTT+GGG - chr4_1:40893904-40893923 Msa0547580:CDS 45.0%
TTTCAGATCCACCAGTTTGG+AGG - chr4_1:40893938-40893957 Msa0547580:CDS 45.0%
TTTCAGTTCCTCCAAACTGG+TGG + chr4_1:40893949-40893968 None:intergenic 45.0%
GTTCAACTTGGGTTCCATGA+GGG - chr4_1:40894315-40894334 Msa0547580:CDS 45.0%
ACAACAAAGTGCAGCCTAGT+TGG - chr4_1:40894401-40894420 Msa0547580:CDS 45.0%
GACTCAAACCCACAACCATT+GGG + chr4_1:40894445-40894464 None:intergenic 45.0%
TGACTCAAACCCACAACCAT+TGG + chr4_1:40894446-40894465 None:intergenic 45.0%
GGTTGTGGGTTTGAGTCATA+AGG - chr4_1:40894448-40894467 Msa0547580:CDS 45.0%
AGTGGAGTTGTCTTGGTAAG+TGG + chr4_1:40894606-40894625 None:intergenic 45.0%
ACTGTTGAAGAGATCAGTGG+AGG + chr4_1:40894678-40894697 None:intergenic 45.0%
GCTACTGTTGAAGAGATCAG+TGG + chr4_1:40894681-40894700 None:intergenic 45.0%
! CATGGATACTCTATAGTGGG+TGG + chr4_1:40894706-40894725 None:intergenic 45.0%
! CACCCACTATAGAGTATCCA+TGG - chr4_1:40894704-40894723 Msa0547580:intron 45.0%
CCCCTCTCTTTATTCTAGGT+AGG + chr4_1:40894797-40894816 None:intergenic 45.0%
GATAAGCCGGGATAGTAACA+AGG - chr4_1:40894826-40894845 Msa0547580:CDS 45.0%
AGATCTTGCCATGCTGAGAT+GGG + chr4_1:40894940-40894959 None:intergenic 45.0%
AAGATCTTGCCATGCTGAGA+TGG + chr4_1:40894941-40894960 None:intergenic 45.0%
! TAACCCTTGAAGGGTGTATG+AGG + chr4_1:40895007-40895026 None:intergenic 45.0%
GGGTTATGCAGACAATGTGA+TGG - chr4_1:40895021-40895040 Msa0547580:CDS 45.0%
GATTTGAGGAGCAAAAAGCC+TGG - chr4_1:40895115-40895134 Msa0547580:intron 45.0%
CTGTAACAGTCTAACCACTG+TGG + chr4_1:40895160-40895179 None:intergenic 45.0%
CACAGTGGTTAGACTGTTAC+AGG - chr4_1:40895158-40895177 Msa0547580:CDS 45.0%
! GTGATCTAGGGTTAGCAGTT+TGG + chr4_1:40896116-40896135 None:intergenic 45.0%
GAAGAAGCTTGGGATTTGAG+AGG - chr4_1:40896855-40896874 Msa0547580:CDS 45.0%
!!! TTTTTTCTATTTTTTTTTTT+TGG - chr4_1:40887242-40887261 Msa0547580:three_prime_UTR 5.0%
!!! TTTTTCTATTTTTTTTTTTT+GGG - chr4_1:40887243-40887262 Msa0547580:three_prime_UTR 5.0%
!!! TCTTTAATTTTTATTTTTAA+TGG + chr4_1:40893817-40893836 None:intergenic 5.0%
TTTCTCTCATTCCCAACCGC+CGG - chr4_1:40886928-40886947 Msa0547580:three_prime_UTR 50.0%
GAAACCGGTAAACACCGTTC+CGG + chr4_1:40886990-40887009 None:intergenic 50.0%
ATCTGCCACGTCATCAGAGA+AGG + chr4_1:40887054-40887073 None:intergenic 50.0%
!! CGTGTTGGAGAAGTTGGTGA+TGG - chr4_1:40887081-40887100 Msa0547580:three_prime_UTR 50.0%
!! GTTGGAGAAGTTGGTGATGG+AGG - chr4_1:40887084-40887103 Msa0547580:three_prime_UTR 50.0%
GATGGAGGTGATGTTTCGTC+TGG - chr4_1:40887099-40887118 Msa0547580:three_prime_UTR 50.0%
AAGAGGATGTTACGAGGTCG+AGG - chr4_1:40887145-40887164 Msa0547580:three_prime_UTR 50.0%
GTGGGATCATGTGATGTGGT+TGG - chr4_1:40887805-40887824 Msa0547580:three_prime_UTR 50.0%
! CATGTGATGTGGTTGGTTGG+TGG - chr4_1:40887812-40887831 Msa0547580:three_prime_UTR 50.0%
!! CAATTGCCAGAGGGCATTCA+TGG - chr4_1:40888487-40888506 Msa0547580:three_prime_UTR 50.0%
ACCATACCATGAATGCCCTC+TGG + chr4_1:40888496-40888515 None:intergenic 50.0%
! TAATGAGGACAGGGGCATGT+TGG + chr4_1:40888595-40888614 None:intergenic 50.0%
CCTGGAACGATAATGAGGAC+AGG + chr4_1:40888605-40888624 None:intergenic 50.0%
CCTGTCCTCATTATCGTTCC+AGG - chr4_1:40888602-40888621 Msa0547580:three_prime_UTR 50.0%
TTAGCAGTCTCTGCACTCCT+GGG + chr4_1:40888753-40888772 None:intergenic 50.0%
TTTAGCAGTCTCTGCACTCC+TGG + chr4_1:40888754-40888773 None:intergenic 50.0%
GTGCCTGTAATGAGGCCAAA+TGG - chr4_1:40888874-40888893 Msa0547580:three_prime_UTR 50.0%
CACCCATTTGGCCTCATTAC+AGG + chr4_1:40888880-40888899 None:intergenic 50.0%
ATGAGGCCAAATGGGTGACA+AGG - chr4_1:40888883-40888902 Msa0547580:three_prime_UTR 50.0%
GCAAACTCTTAAAGGGGCAG+TGG - chr4_1:40888905-40888924 Msa0547580:three_prime_UTR 50.0%
TCCCCAGAGCTTCTTGACTT+CGG - chr4_1:40888942-40888961 Msa0547580:three_prime_UTR 50.0%
ACCGAAGTCAAGAAGCTCTG+GGG + chr4_1:40888946-40888965 None:intergenic 50.0%
GACCGAAGTCAAGAAGCTCT+GGG + chr4_1:40888947-40888966 None:intergenic 50.0%
AGACCGAAGTCAAGAAGCTC+TGG + chr4_1:40888948-40888967 None:intergenic 50.0%
GCACATGAGCCAATCTGTCA+AGG + chr4_1:40889125-40889144 None:intergenic 50.0%
!! GGTGATGGGTGGTCTTCTTT+AGG + chr4_1:40889405-40889424 None:intergenic 50.0%
TTAACTCAGGCGGTGGTGAT+GGG + chr4_1:40889419-40889438 None:intergenic 50.0%
ATTAACTCAGGCGGTGGTGA+TGG + chr4_1:40889420-40889439 None:intergenic 50.0%
AGCACAATTAACTCAGGCGG+TGG + chr4_1:40889426-40889445 None:intergenic 50.0%
GGCAGCACAATTAACTCAGG+CGG + chr4_1:40889429-40889448 None:intergenic 50.0%
!! TTCCTTCTGGGGTCAACCAA+TGG - chr4_1:40889585-40889604 Msa0547580:intron 50.0%
! TACCATTGGTTGACCCCAGA+AGG + chr4_1:40889590-40889609 None:intergenic 50.0%
TGGCTTAGCACGATTCCGAA+TGG - chr4_1:40889644-40889663 Msa0547580:intron 50.0%
CATGTGATACCTGTGGTGTC+TGG - chr4_1:40889739-40889758 Msa0547580:intron 50.0%
! GCTGGAATTGACAGTGCTGA+TGG - chr4_1:40889777-40889796 Msa0547580:intron 50.0%
AATCCGTGTGGGAGATAACC+AGG - chr4_1:40889839-40889858 Msa0547580:intron 50.0%
AAGCCTGGTTATCTCCCACA+CGG + chr4_1:40889845-40889864 None:intergenic 50.0%
ACTAGGGTCTCGTGTTATGC+TGG - chr4_1:40889992-40890011 Msa0547580:intron 50.0%
CAAAGTGGTTGTCTCCTGGT+TGG + chr4_1:40890445-40890464 None:intergenic 50.0%
ACCAGGAGACAACCACTTTG+TGG - chr4_1:40890445-40890464 Msa0547580:intron 50.0%
TCCACAAAGTGGTTGTCTCC+TGG + chr4_1:40890449-40890468 None:intergenic 50.0%
ATGCATCCTCTCAAGTCACC+AGG - chr4_1:40891076-40891095 Msa0547580:intron 50.0%
TGCATCCTCTCAAGTCACCA+GGG - chr4_1:40891077-40891096 Msa0547580:intron 50.0%
AAAAGGGTTGGGAGCTCATC+AGG + chr4_1:40891103-40891122 None:intergenic 50.0%
GGAGCTCTGTCAAGAGGTAA+AGG - chr4_1:40891327-40891346 Msa0547580:intron 50.0%
AGGTAAAGGAACCAGTGTCC+AGG - chr4_1:40891341-40891360 Msa0547580:intron 50.0%
CCAGAACAAAACCTGGACAC+TGG + chr4_1:40891355-40891374 None:intergenic 50.0%
!!! CCAGTGTCCAGGTTTTGTTC+TGG - chr4_1:40891352-40891371 Msa0547580:intron 50.0%
CAAGACAGCTAGAGATCCGA+AGG - chr4_1:40891400-40891419 Msa0547580:intron 50.0%
! GCACTCATAGGCTTTATGGG+AGG - chr4_1:40891440-40891459 Msa0547580:intron 50.0%
TTATGACTGTTGTACGGCCC+TGG - chr4_1:40891507-40891526 Msa0547580:intron 50.0%
! GTGCCCGTTTTCTTTTGCCA+AGG + chr4_1:40891568-40891587 None:intergenic 50.0%
! CAGCTCTGCCTTTTGCCTAT+TGG + chr4_1:40891719-40891738 None:intergenic 50.0%
AGGCAAAAGGCAGAGCTGTT+TGG - chr4_1:40891721-40891740 Msa0547580:intron 50.0%
GGCAAAAGGCAGAGCTGTTT+GGG - chr4_1:40891722-40891741 Msa0547580:intron 50.0%
CAGAGCTGTTTGGGCAAGTA+AGG - chr4_1:40891731-40891750 Msa0547580:intron 50.0%
GCTCCCTTTACATCCACTAC+TGG + chr4_1:40892013-40892032 None:intergenic 50.0%
!! TTACAGAGGGGCACTATAGG+TGG - chr4_1:40892060-40892079 Msa0547580:intron 50.0%
! TGGAAAGGGTCCCACCATTT+TGG - chr4_1:40892204-40892223 Msa0547580:intron 50.0%
TCACGTGACTGAAAGGTCAC+GGG + chr4_1:40892288-40892307 None:intergenic 50.0%
GTCACGTGACTGAAAGGTCA+CGG + chr4_1:40892289-40892308 None:intergenic 50.0%
CAAGGTGAGACTTGACGCAA+CGG + chr4_1:40892322-40892341 None:intergenic 50.0%
ATTGAGGGCTATGGTGAACG+AGG - chr4_1:40893000-40893019 Msa0547580:intron 50.0%
TATGGTGAACGAGGTGGTCT+TGG - chr4_1:40893009-40893028 Msa0547580:intron 50.0%
GTACAAGCTTGGGTCTTCCA+AGG + chr4_1:40893186-40893205 None:intergenic 50.0%
TTGGGTCAGGGTACAAGCTT+GGG + chr4_1:40893196-40893215 None:intergenic 50.0%
!! AGGTTGTGGGAAGGTACCTT+GGG + chr4_1:40893214-40893233 None:intergenic 50.0%
CACCTTCTTGTATGCTCCCT+TGG - chr4_1:40893250-40893269 Msa0547580:intron 50.0%
GCCTTGATAAGGCATAGCTC+TGG + chr4_1:40893307-40893326 None:intergenic 50.0%
!! ATAAGGGGAGGCATCATGGA+GGG + chr4_1:40893363-40893382 None:intergenic 50.0%
AGCATCTGAGGACGAGATTG+AGG + chr4_1:40893393-40893412 None:intergenic 50.0%
ATGCGAAGAGCCAGATTGAC+CGG + chr4_1:40893568-40893587 None:intergenic 50.0%
GAAAGCAGAGCTCATCATCG+AGG + chr4_1:40893684-40893703 None:intergenic 50.0%
!!! AGGATTTTGGGGTGAAAGGG+AGG - chr4_1:40893884-40893903 Msa0547580:CDS 50.0%
! GAGGATTGCTCCCTACCTTT+TGG - chr4_1:40893903-40893922 Msa0547580:CDS 50.0%
GTTATACGAAGCGGCTGAGA+GGG + chr4_1:40894025-40894044 None:intergenic 50.0%
TGTTATACGAAGCGGCTGAG+AGG + chr4_1:40894026-40894045 None:intergenic 50.0%
TCACAAGCCTTCGCCTCAAA+AGG - chr4_1:40894071-40894090 Msa0547580:CDS 50.0%
GGTTCAACTTGGGTTCCATG+AGG - chr4_1:40894314-40894333 Msa0547580:CDS 50.0%
AACTTGGGTTCCATGAGGGA+TGG - chr4_1:40894319-40894338 Msa0547580:CDS 50.0%
ACTTGGGTTCCATGAGGGAT+GGG - chr4_1:40894320-40894339 Msa0547580:CDS 50.0%
ATTTGCTTCCCCATCCCTCA+TGG + chr4_1:40894332-40894351 None:intergenic 50.0%
! GGTGAAGCGTCTTACCAACT+AGG + chr4_1:40894418-40894437 None:intergenic 50.0%
TCACCTACACCCAATGGTTG+TGG - chr4_1:40894433-40894452 Msa0547580:CDS 50.0%
CACCTACACCCAATGGTTGT+GGG - chr4_1:40894434-40894453 Msa0547580:CDS 50.0%
AACCCACAACCATTGGGTGT+AGG + chr4_1:40894439-40894458 None:intergenic 50.0%
CTCGGTCCTTGTTACTATCC+CGG + chr4_1:40894835-40894854 None:intergenic 50.0%
ACAGTGGCGCTGCTACAAAA+GGG + chr4_1:40894889-40894908 None:intergenic 50.0%
TACAGTGGCGCTGCTACAAA+AGG + chr4_1:40894890-40894909 None:intergenic 50.0%
TCTCTTCTCCCATCTCAGCA+TGG - chr4_1:40894929-40894948 Msa0547580:intron 50.0%
GTGCCTCATACACCCTTCAA+GGG - chr4_1:40895001-40895020 Msa0547580:CDS 50.0%
GATGGGCATGTAGATCTGCT+AGG - chr4_1:40895039-40895058 Msa0547580:CDS 50.0%
! AGTGACCGCCGATCTAAGAT+CGG - chr4_1:40896278-40896297 Msa0547580:intron 50.0%
ACGATCCGATCTTAGATCGG+CGG + chr4_1:40896286-40896305 None:intergenic 50.0%
CGTTGCGATCGAAGAAGCTT+GGG - chr4_1:40896845-40896864 Msa0547580:CDS 50.0%
CAGAAACATCTCCGGCGGTT+GGG + chr4_1:40886942-40886961 None:intergenic 55.0%
CGGTAAACACCGTTCCGGAA+CGG + chr4_1:40886985-40887004 None:intergenic 55.0%
CGTTCCGGAACGGTGTTTAC+CGG - chr4_1:40886983-40887002 Msa0547580:three_prime_UTR 55.0%
!! GCCAGAGGGCATTCATGGTA+TGG - chr4_1:40888492-40888511 Msa0547580:three_prime_UTR 55.0%
GGTTATGAGGTCCTCGATCC+TGG + chr4_1:40888623-40888642 None:intergenic 55.0%
! TGATGTCGAAGAGGTGCAGC+AGG - chr4_1:40888824-40888843 Msa0547580:three_prime_UTR 55.0%
! GGTGCAGCAGGCTTTGATGA+AGG - chr4_1:40888836-40888855 Msa0547580:three_prime_UTR 55.0%
CTCTTAAAGGGGCAGTGGGT+AGG - chr4_1:40888910-40888929 Msa0547580:three_prime_UTR 55.0%
GCACGATTCCGAATGGAGAG+AGG - chr4_1:40889651-40889670 Msa0547580:intron 55.0%
TGGCTGCATACCAGATGTGC+TGG - chr4_1:40889759-40889778 Msa0547580:intron 55.0%
ATACGACCTGTGATGCTGCG+AGG - chr4_1:40891013-40891032 Msa0547580:intron 55.0%
TACGACCTGTGATGCTGCGA+GGG - chr4_1:40891014-40891033 Msa0547580:intron 55.0%
GACAGCTAGAGATCCGAAGG+CGG - chr4_1:40891403-40891422 Msa0547580:intron 55.0%
ACAGCTAGAGATCCGAAGGC+GGG - chr4_1:40891404-40891423 Msa0547580:intron 55.0%
TTTCTCCAGATGCCCGCCTT+CGG + chr4_1:40891419-40891438 None:intergenic 55.0%
GTCGTTTGGGCAAAGCACAC+AGG + chr4_1:40892108-40892127 None:intergenic 55.0%
GTGTGCTTTGCCCAAACGAC+AGG - chr4_1:40892108-40892127 Msa0547580:intron 55.0%
TGCATACGCAGGGTCTGGAA+AGG - chr4_1:40892189-40892208 Msa0547580:intron 55.0%
GCATACGCAGGGTCTGGAAA+GGG - chr4_1:40892190-40892209 Msa0547580:intron 55.0%
AAGGTCACGGGTTCAAGTCC+TGG + chr4_1:40892276-40892295 None:intergenic 55.0%
AAAGAAGAGAGGGCCCTGAC+TGG + chr4_1:40892456-40892475 None:intergenic 55.0%
GACGACTCTCCGGTATGTGA+CGG + chr4_1:40892810-40892829 None:intergenic 55.0%
CACATACCGGAGAGTCGTCT+TGG - chr4_1:40892811-40892830 Msa0547580:intron 55.0%
!! ACGAGGTGGTCTTGGTGATG+TGG - chr4_1:40893017-40893036 Msa0547580:intron 55.0%
!! TGGTCTTGGTGATGTGGCAG+AGG - chr4_1:40893023-40893042 Msa0547580:intron 55.0%
!! TCTTGGTGATGTGGCAGAGG+TGG - chr4_1:40893026-40893045 Msa0547580:intron 55.0%
CTTGGGTCAGGGTACAAGCT+TGG + chr4_1:40893197-40893216 None:intergenic 55.0%
CAAGCTTGTACCCTGACCCA+AGG - chr4_1:40893195-40893214 Msa0547580:intron 55.0%
!! TGGGAAGGTACCTTGGGTCA+GGG + chr4_1:40893208-40893227 None:intergenic 55.0%
!! GAGGTTGTGGGAAGGTACCT+TGG + chr4_1:40893215-40893234 None:intergenic 55.0%
!! GAAGGTGTTTGCCAAGGCAG+AGG + chr4_1:40893237-40893256 None:intergenic 55.0%
! GGCCAAGGGAGCATACAAGA+AGG + chr4_1:40893255-40893274 None:intergenic 55.0%
GCGGAGTAGAGTATGGCCAA+GGG + chr4_1:40893269-40893288 None:intergenic 55.0%
TGCGGAGTAGAGTATGGCCA+AGG + chr4_1:40893270-40893289 None:intergenic 55.0%
CTGGAGGGACCATAGTACTG+CGG + chr4_1:40893288-40893307 None:intergenic 55.0%
!! TAAGGGGAGGCATCATGGAG+GGG + chr4_1:40893362-40893381 None:intergenic 55.0%
!! CATAAGGGGAGGCATCATGG+AGG + chr4_1:40893364-40893383 None:intergenic 55.0%
CTCCATGATGCCTCCCCTTA+TGG - chr4_1:40893362-40893381 Msa0547580:intron 55.0%
!! TGCCATAAGGGGAGGCATCA+TGG + chr4_1:40893367-40893386 None:intergenic 55.0%
TGAGGAGATGCCATAAGGGG+AGG + chr4_1:40893375-40893394 None:intergenic 55.0%
CTTGGGTTCCATGAGGGATG+GGG - chr4_1:40894321-40894340 Msa0547580:CDS 55.0%
GACGCTTCACCTACACCCAA+TGG - chr4_1:40894427-40894446 Msa0547580:CDS 55.0%
CGGGATAGTAACAAGGACCG+AGG - chr4_1:40894833-40894852 Msa0547580:CDS 55.0%
CGTGCCTCATACACCCTTCA+AGG - chr4_1:40895000-40895019 Msa0547580:CDS 55.0%
GGCAGCACACGTAACAGAGT+TGG - chr4_1:40895060-40895079 Msa0547580:CDS 55.0%
GTGGTGCAGTCAAGCTGGTA+TGG + chr4_1:40895088-40895107 None:intergenic 55.0%
CAGCTTGACTGCACCACAGA+GGG - chr4_1:40895091-40895110 Msa0547580:CDS 55.0%
! TGACAGTGGTGGAACCACAG+TGG - chr4_1:40895143-40895162 Msa0547580:intron 55.0%
GCGTTGCGATCGAAGAAGCT+TGG - chr4_1:40896844-40896863 Msa0547580:CDS 55.0%
GCAGAAACATCTCCGGCGGT+TGG + chr4_1:40886943-40886962 None:intergenic 60.0%
AGCGGCGGCAGAAACATCTC+CGG + chr4_1:40886950-40886969 None:intergenic 60.0%
AACACCGTTCCGGAACGGCA+CGG + chr4_1:40886980-40886999 None:intergenic 60.0%
AAGAGCTGAAGGCAGCTCCG+AGG + chr4_1:40889349-40889368 None:intergenic 60.0%
GGTATGCAGCCAGACACCAC+AGG + chr4_1:40889751-40889770 None:intergenic 60.0%
ACGACCTGTGATGCTGCGAG+GGG - chr4_1:40891015-40891034 Msa0547580:intron 60.0%
TCTTCCCCTCGCAGCATCAC+AGG + chr4_1:40891022-40891041 None:intergenic 60.0%
TCAGGCCCTGGTGACTTGAG+AGG + chr4_1:40891085-40891104 None:intergenic 60.0%
GCTCTTGCATACGCAGGGTC+TGG - chr4_1:40892184-40892203 Msa0547580:intron 60.0%
ACGCGACCAAGACGACTCTC+CGG + chr4_1:40892820-40892839 None:intergenic 60.0%
CTTGGTCGCGTTCCTCCCTT+TGG - chr4_1:40892829-40892848 Msa0547580:intron 60.0%
GAGGGCTATGGTGAACGAGG+TGG - chr4_1:40893003-40893022 Msa0547580:intron 60.0%
!! GTGGGAAGGTACCTTGGGTC+AGG + chr4_1:40893209-40893228 None:intergenic 60.0%
AGGCAGAGGAGGTTGTGGGA+AGG + chr4_1:40893223-40893242 None:intergenic 60.0%
TCCCACAACCTCCTCTGCCT+TGG - chr4_1:40893223-40893242 Msa0547580:intron 60.0%
GCCAAGGCAGAGGAGGTTGT+GGG + chr4_1:40893227-40893246 None:intergenic 60.0%
TGCCAAGGCAGAGGAGGTTG+TGG + chr4_1:40893228-40893247 None:intergenic 60.0%
GGTGTTTGCCAAGGCAGAGG+AGG + chr4_1:40893234-40893253 None:intergenic 60.0%
! GAGGCATCATGGAGGGGTTG+AGG + chr4_1:40893356-40893375 None:intergenic 60.0%
CCTCTGTGGTGCAGTCAAGC+TGG + chr4_1:40895093-40895112 None:intergenic 60.0%
CCAGCTTGACTGCACCACAG+AGG - chr4_1:40895090-40895109 Msa0547580:CDS 60.0%
GCACCACAGAGGGCGATTTG+AGG - chr4_1:40895101-40895120 Msa0547580:CDS 60.0%
GCTCCTCAAATCGCCCTCTG+TGG + chr4_1:40895107-40895126 None:intergenic 60.0%
AAAGCCTGGCCACGTGACAG+TGG - chr4_1:40895129-40895148 Msa0547580:intron 60.0%
GTGGTTCCACCACTGTCACG+TGG + chr4_1:40895141-40895160 None:intergenic 60.0%
!! ACCTAGCTCTGGACCGAGCT+CGG + chr4_1:40896417-40896436 None:intergenic 60.0%
GGCGGCAGAAACATCTCCGG+CGG + chr4_1:40886947-40886966 None:intergenic 65.0%
GGTGGCTCGTCGCTTCTCTC+CGG - chr4_1:40888266-40888285 Msa0547580:three_prime_UTR 65.0%
GGGGCAGTGGGTAGGCGTAT+TGG - chr4_1:40888918-40888937 Msa0547580:three_prime_UTR 65.0%
!! ACTCAGGCGGTGGTGATGGG+TGG + chr4_1:40889416-40889435 None:intergenic 65.0%
GTTGGGAGCTCATCAGGCCC+TGG + chr4_1:40891097-40891116 None:intergenic 65.0%
GAGATCCGAAGGCGGGCATC+TGG - chr4_1:40891411-40891430 Msa0547580:intron 65.0%
TCCACCACTGTCACGTGGCC+AGG + chr4_1:40895136-40895155 None:intergenic 65.0%
GAACGGCACGGCGGCAGAAG+CGG + chr4_1:40886968-40886987 None:intergenic 70.0%
! CTTCTGCCGCCGTGCCGTTC+CGG - chr4_1:40886968-40886987 Msa0547580:three_prime_UTR 70.0%
ACCGTTCCGGAACGGCACGG+CGG + chr4_1:40886977-40886996 None:intergenic 70.0%
GCCTGGCCACGTGACAGTGG+TGG - chr4_1:40895132-40895151 Msa0547580:intron 70.0%
TGCCCTGCTGCAGCCGAGCT+CGG - chr4_1:40896401-40896420 Msa0547580:intron 70.0%
GACCGAGCTCGGCTGCAGCA+GGG + chr4_1:40896406-40896425 None:intergenic 70.0%
GCCGAGCTCGGTCCAGAGCT+AGG - chr4_1:40896413-40896432 Msa0547580:intron 70.0%
! GCCGCCGTGCCGTTCCGGAA+CGG - chr4_1:40886973-40886992 Msa0547580:three_prime_UTR 75.0%
GGACCGAGCTCGGCTGCAGC+AGG + chr4_1:40896407-40896426 None:intergenic 75.0%
! CGGCACGGCGGCAGAAGCGG+CGG + chr4_1:40886965-40886984 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 40886865 40896938 40886865 ID=Msa0547580;Name=Msa0547580
chr4_1 mRNA 40886865 40896938 40886865 ID=Msa0547580-mRNA-1;Parent=Msa0547580;Name=Msa0547580-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.62|0.44|1|0.5|0.22|9|2577|690
chr4_1 exon 40886865 40889121 40886865 ID=Msa0547580-mRNA-1:exon:10483;Parent=Msa0547580-mRNA-1
chr4_1 exon 40893524 40894672 40893524 ID=Msa0547580-mRNA-1:exon:10482;Parent=Msa0547580-mRNA-1
chr4_1 exon 40894752 40894945 40894752 ID=Msa0547580-mRNA-1:exon:10481;Parent=Msa0547580-mRNA-1
chr4_1 exon 40894967 40895131 40894967 ID=Msa0547580-mRNA-1:exon:10480;Parent=Msa0547580-mRNA-1
chr4_1 exon 40895150 40895375 40895150 ID=Msa0547580-mRNA-1:exon:10479;Parent=Msa0547580-mRNA-1
chr4_1 exon 40895464 40895682 40895464 ID=Msa0547580-mRNA-1:exon:10478;Parent=Msa0547580-mRNA-1
chr4_1 exon 40895777 40895903 40895777 ID=Msa0547580-mRNA-1:exon:10477;Parent=Msa0547580-mRNA-1
chr4_1 exon 40896605 40896777 40896605 ID=Msa0547580-mRNA-1:exon:10476;Parent=Msa0547580-mRNA-1
chr4_1 exon 40896799 40896938 40896799 ID=Msa0547580-mRNA-1:exon:10475;Parent=Msa0547580-mRNA-1
chr4_1 CDS 40896799 40896938 40896799 ID=Msa0547580-mRNA-1:cds;Parent=Msa0547580-mRNA-1
chr4_1 CDS 40896605 40896777 40896605 ID=Msa0547580-mRNA-1:cds;Parent=Msa0547580-mRNA-1
chr4_1 CDS 40895777 40895903 40895777 ID=Msa0547580-mRNA-1:cds;Parent=Msa0547580-mRNA-1
chr4_1 CDS 40895464 40895682 40895464 ID=Msa0547580-mRNA-1:cds;Parent=Msa0547580-mRNA-1
chr4_1 CDS 40895150 40895375 40895150 ID=Msa0547580-mRNA-1:cds;Parent=Msa0547580-mRNA-1
chr4_1 CDS 40894967 40895131 40894967 ID=Msa0547580-mRNA-1:cds;Parent=Msa0547580-mRNA-1
chr4_1 CDS 40894752 40894945 40894752 ID=Msa0547580-mRNA-1:cds;Parent=Msa0547580-mRNA-1
chr4_1 CDS 40893844 40894672 40893844 ID=Msa0547580-mRNA-1:cds;Parent=Msa0547580-mRNA-1
chr4_1 three_prime_UTR 40893524 40893843 40893524 ID=Msa0547580-mRNA-1:three_prime_utr;Parent=Msa0547580-mRNA-1
chr4_1 three_prime_UTR 40886865 40889121 40886865 ID=Msa0547580-mRNA-1:three_prime_utr;Parent=Msa0547580-mRNA-1
Gene Sequence

>Msa0547580

ATGGTTATGAACGAAAGACCCACTAAGCGAGTCAAAAGAAGAGTCACAGCCGATCTTTACGATTTTCTCTCATTCCCAACCGCCGGAGATGTTTCTGCCGCCGCTTCTGCCGCCGTGCCGTTCCGGAACGGTGTTTACCGGTCTGCTTTTCCTCCTGAGCTTTTTCCTTCTCTGATGACGTGGCAGATCTTGTTTCGTGTTGGAGAAGTTGGTGATGGAGGTGATGTTTCGTCTGGTTTGGTTACTCTTGACATTGTTGAAGAGGATGTTACGAGGTCGAGGACGATTTATTGTGATCAATGTCGTGTTGTTGGATGGAGTGCTCATCCTGTGTGTCGAAAGCGATATCACTTCATAATAAGGTCTGCAACTGATGCCAATGCAGCATATCAAAGACCTTGCACTAAATGTGGAACTCCTCTCCAATTATCTGAAGCAAGGTGTAACTCATGTAATTTTGACATTTCTGCTGATGATCTTGAGGAATGGTTGTATCATCAACTTGAGGAGAACAACACACATCTTCTGCATGGTGTTGTACATGCTAATGGTTATGGTCACTTGCTTACTCTTAATGGAAGAGAAGGTGGCTCGTCGCTTCTCTCCGGATCTGATATTATGGGTTTCTGGGATAGGCTTTGTGCTGCTATGTCTGTTAGGAAGGTTACTGTGATGGATTTGTCCAAGAAATTTGGACTGGATTATCGTTTGCTTCATGCAATTGCCAGAGGGCATTCATGGTATGGTAATTGGGGTTATGAATTTGGGACTGGCTGCTATGCTCTTACCGAAGATGCATACAAGATGGCGGTAGATAACTTGTCCAACATGCCCCTGTCCTCATTATCGTTCCAGGATCGAGGACCTCATAACCCTGTACAGTCTTCATTGGCTGAAACTGAACTTCGCACAATGAAAGATCTCTTCTCCTTTTTGTTGGAATTGGTTCAAAATTTTCGTAAGCCCAGGAGTGCAGAGACTGCTAAACTGCATGAACAGACCACTCCCTGTAATTTATTATGTTCATGGACGAGAAATGATGTCGAAGAGGTGTTGCTTGCATCAAGTGCCTGTAATGAGGCCAAATGGGTGACAAGGCAAACTCTTAAAGGGGCAGTGGGTAGGCGTATTGGATCCCCAGAGCTTCTTGACTTCGGTCTTAAGCACTTGCAAGGGAAATCAGTTGCAAATGGAATGGTAGTTTGTTCTCGATGCAATCCCACATCTAGTGCTATTGAATTCAGATTGGCTCATGTGCCTAATGGATTAAGCTCCATTGCAAGCCATCCTTCCAAAGAGCAAGTGATTTCTGATTTGACATTCTTATTTAATTCAATTGTTCACCCTGAAAAAATGATCAAATATAGACCAAAGATTAATAGGAAAACAGTGGCTGATTCAGCCAGAAAGCTTCTTGACTGTAAGCAATTTATGAAGGATTACAAAATCGAGCAAATGACCTCGGAGCTGCCTTCAGCTCTTAAGATCTGGTGTCACGTGAAGCTTTCTGACCATCCTAAAGAAGACCACCCATCACCACCGCCTGAGTTAATTGTGCTGCCTTTGAATGCTACTAATGTTGACCTTTTGAATGAAGTCACTGGTGTTTTTCAAGAAGTATATGCAATGTACAAGAAGTTTGTAGCCGTGAAACTTCTAGGATATGGTTTAACCCGAGATCGTGTGTATACCCTAAAATTCCTTCTGGGGTCAACCAATGGTACAGTTGAAGTTCAAGGAGAATGCCCAGCTAAAAATGGCTTAGCACGATTCCGAATGGAGAGAGGAACAGAAGAATGGAAGGTTGACTGCATTTGTGGTACTAAGGATGATGATGGAGAAAGGATGTTAGCATGTGATACCTGTGGTGTCTGGCTGCATACCAGATGTGCTGGAATTGACAGTGCTGATGGGATGCCTTCCAAGTTTGTATGTAAGAGATGTGTTAACTCAATCCGTGTGGGAGATAACCAGGCTTGTAAATTAAACACATATTGCAGAGATGAAGCGGTGGCTACATATTCTGCACCTGTTCGTTGTAATATAAAAAATGTGAATTTTGGTGTACGTTGA
Protein sequence

>Msa0547580

MVMNERPTKRVKRRVTADLYDFLSFPTAGDVSAAASAAVPFRNGVYRSAFPPELFPSLMTWQILFRVGEVGDGGDVSSGLVTLDIVEEDVTRSRTIYCDQCRVVGWSAHPVCRKRYHFIIRSATDANAAYQRPCTKCGTPLQLSEARCNSCNFDISADDLEEWLYHQLEENNTHLLHGVVHANGYGHLLTLNGREGGSSLLSGSDIMGFWDRLCAAMSVRKVTVMDLSKKFGLDYRLLHAIARGHSWYGNWGYEFGTGCYALTEDAYKMAVDNLSNMPLSSLSFQDRGPHNPVQSSLAETELRTMKDLFSFLLELVQNFRKPRSAETAKLHEQTTPCNLLCSWTRNDVEEVLLASSACNEAKWVTRQTLKGAVGRRIGSPELLDFGLKHLQGKSVANGMVVCSRCNPTSSAIEFRLAHVPNGLSSIASHPSKEQVISDLTFLFNSIVHPEKMIKYRPKINRKTVADSARKLLDCKQFMKDYKIEQMTSELPSALKIWCHVKLSDHPKEDHPSPPPELIVLPLNATNVDLLNEVTGVFQEVYAMYKKFVAVKLLGYGLTRDRVYTLKFLLGSTNGTVEVQGECPAKNGLARFRMERGTEEWKVDCICGTKDDDGERMLACDTCGVWLHTRCAGIDSADGMPSKFVCKRCVNSIRVGDNQACKLNTYCRDEAVATYSAPVRCNIKNVNFGVR*