AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1427940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1427940 MtrunA17_Chr4g0017901 93.239 710 25 4 1 690 1 707 0.0 1362
Msa1427940 MtrunA17_Chr1g0188421 48.644 553 258 10 137 673 3 545 8.67e-174 508
Msa1427940 MtrunA17_Chr5g0434341 28.333 660 334 18 80 652 98 705 5.75e-79 266
Msa1427940 MtrunA17_Chr5g0417171 30.342 468 264 15 233 654 1 452 2.40e-52 187
Msa1427940 MtrunA17_Chr1g0188411 49.107 112 50 2 1 105 2 113 6.65e-30 114
Msa1427940 MtrunA17_Chr5g0417181 50.877 57 27 1 166 222 8 63 3.47e-13 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1427940 AT1G33420.1 50.771 713 285 23 2 676 3 687 0.0 665
Msa1427940 AT1G33420.2 50.167 598 245 17 105 676 12 582 0.0 559
Msa1427940 AT5G22260.1 29.605 608 361 15 81 648 81 661 9.29e-81 270
Msa1427940 AT1G66170.1 28.169 639 340 18 75 648 69 653 1.04e-74 255
Msa1427940 AT2G01810.1 30.943 265 137 6 74 328 72 300 1.70e-31 131
Msa1427940 AT2G01810.1 27.597 308 178 10 364 648 397 682 3.10e-27 118
Msa1427940 AT2G07714.1 33.898 118 69 2 207 315 1 118 2.13e-18 84.3
Msa1427940 AT1G32810.2 41.270 63 34 1 600 662 22 81 4.99e-11 66.6

Find 286 sgRNAs with CRISPR-Local

Find 784 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAATTCACTTGAATTTAT+TGG 0.105268 tig0026233:+12515 Msa1427940:intergenic
GAGAAGAATGCTTAACTTAT+TGG 0.121131 tig0026233:-12305 Msa1427940:three_prime_UTR
CTTACAGTCAAGAAGCTTTC+TGG 0.134184 tig0026233:+19819 Msa1427940:intergenic
GGTAATTGGGGTTATGAATT+TGG 0.134330 tig0026233:-20595 Msa1427940:CDS
GATCTGATATTATGGGTTTC+TGG 0.138269 tig0026233:-20820 Msa1427940:CDS
TTATTGGATTTGTTTAAATT+TGG 0.149243 tig0026233:+12531 Msa1427940:intergenic
CGCAACTCCTTAAAATTATT+TGG 0.155540 tig0026233:-13193 Msa1427940:three_prime_UTR
TTCAACAACCATTGAGAATA+TGG 0.160436 tig0026233:+13349 Msa1427940:intergenic
GGTCACTTGCTTACTCTTAA+TGG 0.175979 tig0026233:-20872 Msa1427940:CDS
GTTACCTTGCTTCAGATAAT+TGG 0.198863 tig0026233:+21099 Msa1427940:intergenic
GGCATTCATGGTATGGTAAT+TGG 0.203027 tig0026233:-20609 Msa1427940:CDS
ATGGATTTGTCCAAGAAATT+TGG 0.204374 tig0026233:-20667 Msa1427940:CDS
TCATTTCTTCTTACTTTATC+AGG 0.213502 tig0026233:-13537 Msa1427940:three_prime_UTR
TCTCTCCGGATCTGATATTA+TGG 0.225259 tig0026233:-20828 Msa1427940:CDS
TCAACCCCTCTCTTTATTCT+AGG 0.242517 tig0026233:+14308 Msa1427940:intergenic
CCTGTAATTTATTATGTTCA+TGG 0.246154 tig0026233:-20315 Msa1427940:CDS
ATTATTTGGCAGAAATCTTT+AGG 0.248637 tig0026233:-13179 Msa1427940:three_prime_UTR
CCACAGTGGCATCAATAAAT+TGG 0.249246 tig0026233:-13769 Msa1427940:three_prime_UTR
CACCCATTTGGCCTCATTAC+AGG 0.263526 tig0026233:+20231 Msa1427940:intergenic
CTTCTGCCGCCGTGCCGTTC+CGG 0.264413 tig0026233:-22143 Msa1427940:CDS
ATCAGAAATCACTTGCTCTT+TGG 0.265036 tig0026233:+19930 Msa1427940:intergenic
AATATAGACCAAAGATTAAT+AGG 0.265549 tig0026233:-19861 Msa1427940:CDS
ATACAAAATCGGTTATTCTT+TGG 0.266874 tig0026233:-12193 Msa1427940:three_prime_UTR
TAAGCTAATATTATAGATTT+CGG 0.277037 tig0026233:+13023 Msa1427940:intergenic
AAATACTCAAGCTCTGTTCT+TGG 0.279504 tig0026233:-18942 Msa1427940:three_prime_UTR
GGTGATGGGTGGTCTTCTTT+AGG 0.279988 tig0026233:+19706 Msa1427940:intergenic
TTGAACCAATTCCAACAAAA+AGG 0.282288 tig0026233:+20393 Msa1427940:intergenic
TGATCTTGTTATGTTGAATT+TGG 0.289351 tig0026233:+13148 Msa1427940:intergenic
TTTAGCAGTCTCTGCACTCC+TGG 0.291770 tig0026233:+20357 Msa1427940:intergenic
GTGACAAGGCAAACTCTTAA+AGG 0.292184 tig0026233:-20211 Msa1427940:CDS
GTAATTGGGGTTATGAATTT+GGG 0.295494 tig0026233:-20594 Msa1427940:CDS
TTGATACATTTAACAGATCT+AGG 0.307630 tig0026233:+12416 Msa1427940:intergenic
TTTGTAGCCGTGAAACTTCT+AGG 0.308688 tig0026233:-19583 Msa1427940:CDS
AGCGATATCACTTCATAATA+AGG 0.310055 tig0026233:-21181 Msa1427940:CDS
GCATTCATGGTATGGTAATT+GGG 0.312049 tig0026233:-20608 Msa1427940:CDS
TACTAGTTTATAGATATATT+AGG 0.312699 tig0026233:+12573 Msa1427940:intergenic
CTCTCCGGATCTGATATTAT+GGG 0.313811 tig0026233:-20827 Msa1427940:CDS
ATAATCCAGTCCAAATTTCT+TGG 0.316954 tig0026233:+20657 Msa1427940:intergenic
GACTATTGCGATTGTGATCT+AGG 0.317183 tig0026233:+12980 Msa1427940:intergenic
CATCTACACATTCGGGATAT+TGG 0.322337 tig0026233:+12734 Msa1427940:intergenic
GTTAGACTGTTACAGGAATT+AGG 0.323072 tig0026233:-13941 Msa1427940:three_prime_UTR
GGACCGAGCTCGGCTGCAGC+AGG 0.330168 tig0026233:+12702 Msa1427940:intergenic
CTGCTACAAAAGGGATATTA+TGG 0.334992 tig0026233:+14229 Msa1427940:intergenic
CACAGTGGTTAGACTGTTAC+AGG 0.335440 tig0026233:-13948 Msa1427940:three_prime_UTR
CCATGAACATAATAAATTAC+AGG 0.344829 tig0026233:+20315 Msa1427940:intergenic
CCTGTCCTCATTATCGTTCC+AGG 0.345172 tig0026233:-20506 Msa1427940:CDS
TGCCCTGCTGCAGCCGAGCT+CGG 0.346574 tig0026233:-12705 Msa1427940:three_prime_UTR
GTATACCCTAAAATTCCTTC+TGG 0.348946 tig0026233:-19536 Msa1427940:CDS
CATCTAGTGCTATTGAATTC+AGG 0.352626 tig0026233:-20078 Msa1427940:intron
TTTGTGCTGCTATGTCTGTT+AGG 0.352835 tig0026233:-20790 Msa1427940:intron
GTGATCTAGGGTTAGCAGTT+TGG 0.362512 tig0026233:+12993 Msa1427940:intergenic
CACAGAGATTATTAACTATA+GGG 0.364061 tig0026233:-13623 Msa1427940:three_prime_UTR
GGTGACAGATAATTTGATCT+TGG 0.364764 tig0026233:+18887 Msa1427940:intergenic
GTCAACTTCGATATCATGTT+AGG 0.365328 tig0026233:-12960 Msa1427940:three_prime_UTR
CGCCATCTTGTATGCATCTT+CGG 0.374613 tig0026233:+20552 Msa1427940:intergenic
AGTTTGCCTTGTCACCCATT+TGG 0.383313 tig0026233:+20219 Msa1427940:intergenic
ATATTATGGGTTTCTGGGAT+AGG 0.384205 tig0026233:-20814 Msa1427940:CDS
GATTGCAAACTCAAGAACTA+TGG 0.384514 tig0026233:-12888 Msa1427940:three_prime_UTR
ATCTGATATTATGGGTTTCT+GGG 0.386047 tig0026233:-20819 Msa1427940:CDS
CTCATTCACTATTTCAATCA+AGG 0.390699 tig0026233:-14351 Msa1427940:three_prime_UTR
CGTTCCGGAACGGTGTTTAC+CGG 0.393085 tig0026233:-22128 Msa1427940:intron
GCCGTGAAACTTCTAGGATA+TGG 0.393856 tig0026233:-19577 Msa1427940:CDS
CAGACGTTCAGATTCTAGTT+AGG 0.397027 tig0026233:+12775 Msa1427940:intergenic
CGTGCCTCATACACCCTTCA+AGG 0.403284 tig0026233:-14106 Msa1427940:three_prime_UTR
ATTGGATTGAATGAAATTCA+TGG 0.404879 tig0026233:-12287 Msa1427940:three_prime_UTR
ATTGAGAATATGGGTTTACT+TGG 0.405492 tig0026233:+13359 Msa1427940:intergenic
ACTTGATTTGTTGCTTTAGC+AGG 0.406156 tig0026233:+13232 Msa1427940:intergenic
TGACAAGGCAAACTCTTAAA+GGG 0.406437 tig0026233:-20210 Msa1427940:CDS
GGTTATGAGGTCCTCGATCC+TGG 0.408649 tig0026233:+20488 Msa1427940:intergenic
ACACAGAGATTATTAACTAT+AGG 0.410370 tig0026233:-13624 Msa1427940:three_prime_UTR
GAATTAATCACGTGATAGAT+TGG 0.410423 tig0026233:+13802 Msa1427940:intergenic
CAATCACACATCTACACATT+CGG 0.411360 tig0026233:+12726 Msa1427940:intergenic
GTGACAGATAATTTGATCTT+GGG 0.412536 tig0026233:+18888 Msa1427940:intergenic
TACAGTGGCGCTGCTACAAA+AGG 0.416249 tig0026233:+14219 Msa1427940:intergenic
GCAATGGAGCTTAATCCATT+AGG 0.416846 tig0026233:+19964 Msa1427940:intergenic
CAATTGCCAGAGGGCATTCA+TGG 0.418503 tig0026233:-20621 Msa1427940:CDS
AGACCGAAGTCAAGAAGCTC+TGG 0.418880 tig0026233:+20163 Msa1427940:intergenic
CTTCTGTTCCTCTCTCCATT+CGG 0.420523 tig0026233:+19449 Msa1427940:intergenic
ATGACTCAAATTCCAACTTC+AGG 0.422494 tig0026233:-13726 Msa1427940:three_prime_UTR
ACTGTCAATTCCAGCACATC+TGG 0.423348 tig0026233:+19339 Msa1427940:intergenic
TCCACCACTGTCACGTGGCC+AGG 0.426266 tig0026233:+13973 Msa1427940:intergenic
CATGTGATACCTGTGGTGTC+TGG 0.429395 tig0026233:-19369 Msa1427940:CDS
CGGCACGGCGGCAGAAGCGG+CGG 0.430200 tig0026233:+22149 Msa1427940:intergenic
TGTGATCAATGTCGTGTTGT+TGG 0.430361 tig0026233:-21934 Msa1427940:intron
TCAACAACCATTGAGAATAT+GGG 0.433150 tig0026233:+13350 Msa1427940:intergenic
TATACCCTAAAATTCCTTCT+GGG 0.437390 tig0026233:-19535 Msa1427940:CDS
TAAATCTGATTACCTGAAGT+TGG 0.437870 tig0026233:+13714 Msa1427940:intergenic
CTCGGTCCTTGTTACTATCC+CGG 0.441802 tig0026233:+14274 Msa1427940:intergenic
GGGGCAGTGGGTAGGCGTAT+TGG 0.443315 tig0026233:-20190 Msa1427940:CDS
CAGAAACATCTCCGGCGGTT+GGG 0.443612 tig0026233:+22172 Msa1427940:intergenic
AACTGTCTGGAATCAATCTC+TGG 0.444424 tig0026233:+19073 Msa1427940:intergenic
AGATTGGCTCATGTGCCTAA+TGG 0.445142 tig0026233:-19979 Msa1427940:CDS
AGAGACAAAGTTCAACTGTC+TGG 0.445662 tig0026233:+19060 Msa1427940:intergenic
GTTGTTGTAGAATACAAAAT+CGG 0.450390 tig0026233:-12204 Msa1427940:three_prime_UTR
GCAAACTCTTAAAGGGGCAG+TGG 0.450934 tig0026233:-20203 Msa1427940:CDS
ACCATATCCTAGAAGTTTCA+CGG 0.450976 tig0026233:+19576 Msa1427940:intergenic
ATTAACTCAGGCGGTGGTGA+TGG 0.451540 tig0026233:+19691 Msa1427940:intergenic
TTGAACTTCAACTGTACCAT+TGG 0.453345 tig0026233:+19507 Msa1427940:intergenic
TGCCTTCAGCTCTTAAGATC+TGG 0.455075 tig0026233:-19753 Msa1427940:CDS
ATGTGTTTAATTTACAAGCC+TGG 0.455360 tig0026233:+19251 Msa1427940:intergenic
ACTAGGGTCTCGTGTTATGC+TGG 0.455799 tig0026233:-19116 Msa1427940:three_prime_UTR
AATCTCTGGTACAGAATCCT+TGG 0.457091 tig0026233:+19087 Msa1427940:intergenic
ATTGTCTGCATAACCCTTGA+AGG 0.462694 tig0026233:+14092 Msa1427940:intergenic
CTTCGTGATATTAAAGTCCA+TGG 0.463483 tig0026233:+14385 Msa1427940:intergenic
CAAGGGAAATCAGTTGCAAA+TGG 0.466137 tig0026233:-20130 Msa1427940:CDS
AAGTAAACCCATATTCTCAA+TGG 0.467487 tig0026233:-13357 Msa1427940:three_prime_UTR
AAGATCTTGCCATGCTGAGA+TGG 0.467716 tig0026233:+14168 Msa1427940:intergenic
TCACTTGCTCTTTGGAAGGA+TGG 0.470398 tig0026233:+19938 Msa1427940:intergenic
AGTCCATGGATACTCTATAG+TGG 0.473150 tig0026233:+14399 Msa1427940:intergenic
TGACTGTAAGCAATTTATGA+AGG 0.473976 tig0026233:-19806 Msa1427940:CDS
GTAATTCTGTAACCTAGCTC+TGG 0.476662 tig0026233:+12681 Msa1427940:intergenic
GTGGTGCAGTCAAGCTGGTA+TGG 0.477582 tig0026233:+14021 Msa1427940:intergenic
GTGCCTGTAATGAGGCCAAA+TGG 0.478860 tig0026233:-20234 Msa1427940:CDS
CATGGTGTTGTACATGCTAA+TGG 0.479985 tig0026233:-20899 Msa1427940:CDS
CGTGTTGGAGAAGTTGGTGA+TGG 0.480654 tig0026233:-22030 Msa1427940:CDS
CATTTCTGCTGATGATCTTG+AGG 0.481146 tig0026233:-20966 Msa1427940:CDS
CACCAGTGACTTCATTCAAA+AGG 0.481665 tig0026233:+19638 Msa1427940:intergenic
GTTTATTGCAGTCAATAGCT+TGG 0.483314 tig0026233:+13645 Msa1427940:intergenic
GTTGTACATGCTAATGGTTA+TGG 0.485683 tig0026233:-20893 Msa1427940:CDS
TCCCCAGAGCTTCTTGACTT+CGG 0.486064 tig0026233:-20166 Msa1427940:CDS
GATGGAGGTGATGTTTCGTC+TGG 0.488976 tig0026233:-22012 Msa1427940:CDS
CTGCTGATGATCTTGAGGAA+TGG 0.489195 tig0026233:-20961 Msa1427940:CDS
CAACAGTTTCGTCAACATCA+AGG 0.489564 tig0026233:+12223 Msa1427940:intergenic
TTAGCAGTCTCTGCACTCCT+GGG 0.490833 tig0026233:+20358 Msa1427940:intergenic
AGGTGATGTTTCGTCTGGTT+TGG 0.491601 tig0026233:-22007 Msa1427940:CDS
ACCACTGAATGAAATTTGAA+TGG 0.491821 tig0026233:+13669 Msa1427940:intergenic
CTCTTAAAGGGGCAGTGGGT+AGG 0.492217 tig0026233:-20198 Msa1427940:CDS
TGGCAGATCTTGTTTCGTGT+TGG 0.492289 tig0026233:-22045 Msa1427940:CDS
TGGGGTTATGAATTTGGGAC+TGG 0.492477 tig0026233:-20589 Msa1427940:CDS
GAACGGCACGGCGGCAGAAG+CGG 0.493751 tig0026233:+22146 Msa1427940:intergenic
ACATCTCTTACATACAAACT+TGG 0.497300 tig0026233:+19300 Msa1427940:intergenic
GAGAGGAACAGAAGAATGGA+AGG 0.497458 tig0026233:-19440 Msa1427940:CDS
TAACCCTTGAAGGGTGTATG+AGG 0.498078 tig0026233:+14102 Msa1427940:intergenic
ATGGGTGGTCTTCTTTAGGA+TGG 0.498222 tig0026233:+19710 Msa1427940:intergenic
ACCATTCAAATTTCATTCAG+TGG 0.503786 tig0026233:-13670 Msa1427940:three_prime_UTR
TAGGGTATACACACGATCTC+GGG 0.503961 tig0026233:+19549 Msa1427940:intergenic
CTAAGGATGATGATGGAGAA+AGG 0.503983 tig0026233:-19399 Msa1427940:CDS
AGAGAAATAACAGACTGTAC+AGG 0.504612 tig0026233:+20466 Msa1427940:intergenic
GCAGAAACATCTCCGGCGGT+TGG 0.506827 tig0026233:+22171 Msa1427940:intergenic
TTTGTCCAAGAAATTTGGAC+TGG 0.508061 tig0026233:-20662 Msa1427940:CDS
TTAGGGTATACACACGATCT+CGG 0.508674 tig0026233:+19548 Msa1427940:intergenic
AGATCTTGCCATGCTGAGAT+GGG 0.509313 tig0026233:+14169 Msa1427940:intergenic
ACCTAGCTCTGGACCGAGCT+CGG 0.509997 tig0026233:+12692 Msa1427940:intergenic
GAAACCCATAATATCAGATC+CGG 0.515739 tig0026233:+20823 Msa1427940:intergenic
TGTATATTTATGAGAGACTA+GGG 0.516429 tig0026233:-19132 Msa1427940:three_prime_UTR
GGTGGCTCGTCGCTTCTCTC+CGG 0.517601 tig0026233:-20842 Msa1427940:CDS
TGGCTGCATACCAGATGTGC+TGG 0.517639 tig0026233:-19349 Msa1427940:CDS
ACTATTGCGATTGTGATCTA+GGG 0.518276 tig0026233:+12981 Msa1427940:intergenic
GAAACCGGTAAACACCGTTC+CGG 0.520178 tig0026233:+22124 Msa1427940:intergenic
AATGGTACAGTTGAAGTTCA+AGG 0.522348 tig0026233:-19505 Msa1427940:CDS
TTGTTTCGTGTTGGAGAAGT+TGG 0.522586 tig0026233:-22036 Msa1427940:CDS
TGGAAGGTTGACTGCATTTG+TGG 0.523381 tig0026233:-19424 Msa1427940:CDS
GCCGCCGTGCCGTTCCGGAA+CGG 0.526524 tig0026233:-22138 Msa1427940:CDS
GCACCACAGAGGGCGATTTG+AGG 0.529764 tig0026233:-14005 Msa1427940:three_prime_UTR
GAGAAATAACAGACTGTACA+GGG 0.531821 tig0026233:+20467 Msa1427940:intergenic
TCACGTGATAGATTGGAAGT+TGG 0.532073 tig0026233:+13809 Msa1427940:intergenic
TGATACATTTAACAGATCTA+GGG 0.532301 tig0026233:+12417 Msa1427940:intergenic
GCCAGAGGGCATTCATGGTA+TGG 0.532503 tig0026233:-20616 Msa1427940:CDS
TTACAGGAAGGTTACTGTGA+TGG 0.535841 tig0026233:-20686 Msa1427940:intron
GCCGAGCTCGGTCCAGAGCT+AGG 0.535880 tig0026233:-12693 Msa1427940:three_prime_UTR
CCTCTGTGGTGCAGTCAAGC+TGG 0.537268 tig0026233:+14016 Msa1427940:intergenic
TGTTATGCTGGATTTATCCA+AGG 0.537415 tig0026233:-19104 Msa1427940:three_prime_UTR
TTAACTCAGGCGGTGGTGAT+GGG 0.538447 tig0026233:+19692 Msa1427940:intergenic
TTTGGAAGGATGGCTTGCAA+TGG 0.539310 tig0026233:+19948 Msa1427940:intergenic
GGCAGCACACGTAACAGAGT+TGG 0.541146 tig0026233:-14046 Msa1427940:three_prime_UTR
TGGAGAGAGGAACAGAAGAA+TGG 0.542622 tig0026233:-19444 Msa1427940:CDS
GAAATCACTTGCTCTTTGGA+AGG 0.542791 tig0026233:+19934 Msa1427940:intergenic
TCACATCGGAATCACACATT+CGG 0.543587 tig0026233:-12857 Msa1427940:three_prime_UTR
AATCACACATCTACACATTC+GGG 0.547210 tig0026233:+12727 Msa1427940:intergenic
TGCCTGTAATGAGGCCAAAT+GGG 0.548171 tig0026233:-20233 Msa1427940:CDS
ACATAATAAATTACAGGGAG+TGG 0.548311 tig0026233:+20321 Msa1427940:intergenic
TCTCTTCTCCCATCTCAGCA+TGG 0.548536 tig0026233:-14177 Msa1427940:three_prime_UTR
CAAAGACCTTGCACTAAATG+TGG 0.549659 tig0026233:-21131 Msa1427940:CDS
CTTACTCTTAATGGAAGAGA+AGG 0.551976 tig0026233:-20863 Msa1427940:CDS
GCGTTGCGATCGAAGAAGCT+TGG 0.552325 tig0026233:-12262 Msa1427940:three_prime_UTR
ATGTATATTTATGAGAGACT+AGG 0.552817 tig0026233:-19133 Msa1427940:three_prime_UTR
TTCCTTCTGGGGTCAACCAA+TGG 0.553492 tig0026233:-19523 Msa1427940:CDS
AATCCGTGTGGGAGATAACC+AGG 0.554516 tig0026233:-19269 Msa1427940:CDS
TACCATTGGTTGACCCCAGA+AGG 0.556401 tig0026233:+19521 Msa1427940:intergenic
TGACTGCATTTGTGGTACTA+AGG 0.556557 tig0026233:-19416 Msa1427940:CDS
AAGAGGATGTTACGAGGTCG+AGG 0.557183 tig0026233:-21966 Msa1427940:CDS
CACATATTGCAGAGATGAAG+CGG 0.558172 tig0026233:-19233 Msa1427940:CDS
CCTGGAACGATAATGAGGAC+AGG 0.559753 tig0026233:+20506 Msa1427940:intergenic
TTCGGTCTTAAGCACTTGCA+AGG 0.560600 tig0026233:-20148 Msa1427940:CDS
GAAATCAGTTGCAAATGGAA+TGG 0.561635 tig0026233:-20125 Msa1427940:CDS
TTTCTCTCATTCCCAACCGC+CGG 0.561689 tig0026233:-22183 Msa1427940:CDS
CACCCACTATAGAGTATCCA+TGG 0.562141 tig0026233:-14402 Msa1427940:three_prime_UTR
AGCGGCGGCAGAAACATCTC+CGG 0.563018 tig0026233:+22164 Msa1427940:intergenic
CACCAGATCTTAAGAGCTGA+AGG 0.563451 tig0026233:+19751 Msa1427940:intergenic
TTAACGATCCGATCTTAGAT+CGG 0.564407 tig0026233:+12820 Msa1427940:intergenic
ATCTGCCACGTCATCAGAGA+AGG 0.565487 tig0026233:+22060 Msa1427940:intergenic
GACCGAGCTCGGCTGCAGCA+GGG 0.565542 tig0026233:+12703 Msa1427940:intergenic
TGAGAGAAAATCGTAAAGAT+CGG 0.568309 tig0026233:+22197 Msa1427940:intergenic
GTTGGAGAAGTTGGTGATGG+AGG 0.568722 tig0026233:-22027 Msa1427940:CDS
CATGAACATAATAAATTACA+GGG 0.569899 tig0026233:+20316 Msa1427940:intergenic
TACTCTTGACATTGTTGAAG+AGG 0.570128 tig0026233:-21983 Msa1427940:CDS
CATTGATGAACACTAATCAC+AGG 0.570728 tig0026233:+12605 Msa1427940:intergenic
CTCTCCAATTATCTGAAGCA+AGG 0.571531 tig0026233:-21103 Msa1427940:intron
ACCATACCATGAATGCCCTC+TGG 0.571735 tig0026233:+20615 Msa1427940:intergenic
ACAGACTGTACAGGGTTATG+AGG 0.572142 tig0026233:+20475 Msa1427940:intergenic
TCCTACCTAGAATAAAGAGA+GGG 0.573325 tig0026233:-14313 Msa1427940:three_prime_UTR
CAGGTAATCAGATTTAGACT+AGG 0.574534 tig0026233:-13707 Msa1427940:three_prime_UTR
GGAGTTCCACATTTAGTGCA+AGG 0.575869 tig0026233:+21125 Msa1427940:intergenic
GTCCATGGATACTCTATAGT+GGG 0.577540 tig0026233:+14400 Msa1427940:intergenic
CATGGATACTCTATAGTGGG+TGG 0.581148 tig0026233:+14403 Msa1427940:intergenic
GAATTCAATAGCACTAGATG+TGG 0.582215 tig0026233:+20081 Msa1427940:intergenic
TCGATCCTGGAACGATAATG+AGG 0.584434 tig0026233:+20501 Msa1427940:intergenic
TGCTTCATGCAATTGCCAGA+GGG 0.584514 tig0026233:-20630 Msa1427940:CDS
CAGCTTGACTGCACCACAGA+GGG 0.584661 tig0026233:-14015 Msa1427940:three_prime_UTR
TAATGAGGACAGGGGCATGT+TGG 0.585572 tig0026233:+20516 Msa1427940:intergenic
AGCACAATTAACTCAGGCGG+TGG 0.587016 tig0026233:+19685 Msa1427940:intergenic
CTGGAACGATAATGAGGACA+GGG 0.587261 tig0026233:+20507 Msa1427940:intergenic
AAGAAGCTTGGAGATTTGAG+AGG 0.587981 tig0026233:-12250 Msa1427940:three_prime_UTR
ACAGTGGCGCTGCTACAAAA+GGG 0.588316 tig0026233:+14220 Msa1427940:intergenic
GGGTTATGCAGACAATGTGA+TGG 0.589510 tig0026233:-14085 Msa1427940:three_prime_UTR
GACCGAAGTCAAGAAGCTCT+GGG 0.590778 tig0026233:+20164 Msa1427940:intergenic
GATTATTAACTATAGGGCAT+CGG 0.593189 tig0026233:-13617 Msa1427940:three_prime_UTR
ATGGATACTCTATAGTGGGT+GGG 0.593440 tig0026233:+14404 Msa1427940:intergenic
AGGTCTTTGATATGCTGCAT+TGG 0.594618 tig0026233:+21145 Msa1427940:intergenic
AGGGCAGTTATATGGCATCA+TGG 0.596673 tig0026233:+18866 Msa1427940:intergenic
ACTCAGGCGGTGGTGATGGG+TGG 0.596918 tig0026233:+19695 Msa1427940:intergenic
CTTGCTTCAGATAATTGGAG+AGG 0.597599 tig0026233:+21104 Msa1427940:intergenic
TTGCTTCATGCAATTGCCAG+AGG 0.599692 tig0026233:-20631 Msa1427940:CDS
TGGCTTAGCACGATTCCGAA+TGG 0.602115 tig0026233:-19464 Msa1427940:CDS
TCAACATTAGTAGCATTCAA+AGG 0.603217 tig0026233:+19661 Msa1427940:intergenic
CGGTAAACACCGTTCCGGAA+CGG 0.603326 tig0026233:+22129 Msa1427940:intergenic
ACTCTTAATGGAAGAGAAGG+TGG 0.606675 tig0026233:-20860 Msa1427940:CDS
TGTGGTACTAAGGATGATGA+TGG 0.607260 tig0026233:-19406 Msa1427940:CDS
CATTCATGGTATGGTAATTG+GGG 0.608012 tig0026233:-20607 Msa1427940:CDS
CTCTTACATACAAACTTGGA+AGG 0.608157 tig0026233:+19304 Msa1427940:intergenic
AAAGCCTGGCCACGTGACAG+TGG 0.608300 tig0026233:-13977 Msa1427940:three_prime_UTR
GGGTCTTTCGTTCATAACCA+TGG 0.609508 tig0026233:+22248 Msa1427940:intergenic
GCCTGGCCACGTGACAGTGG+TGG 0.610313 tig0026233:-13974 Msa1427940:three_prime_UTR
TACCGAAGATGCATACAAGA+TGG 0.612813 tig0026233:-20554 Msa1427940:CDS
CTGGAATTGACAGTGCTGAT+GGG 0.613480 tig0026233:-19330 Msa1427940:CDS
GGTTATGCAGACAATGTGAT+GGG 0.613588 tig0026233:-14084 Msa1427940:three_prime_UTR
CCCCTCTCTTTATTCTAGGT+AGG 0.613980 tig0026233:+14312 Msa1427940:intergenic
ATGAGGCCAAATGGGTGACA+AGG 0.617957 tig0026233:-20225 Msa1427940:CDS
AAAGGCAGCACAATTAACTC+AGG 0.618250 tig0026233:+19679 Msa1427940:intergenic
CAAACTCTTAAAGGGGCAGT+GGG 0.620060 tig0026233:-20202 Msa1427940:CDS
GCTGGAATTGACAGTGCTGA+TGG 0.620926 tig0026233:-19331 Msa1427940:CDS
TGCATCAAGTGCCTGTAATG+AGG 0.624858 tig0026233:-20242 Msa1427940:CDS
TCGGTCTTAAGCACTTGCAA+GGG 0.628349 tig0026233:-20147 Msa1427940:CDS
AGTGACCGCCGATCTAAGAT+CGG 0.628781 tig0026233:-12828 Msa1427940:three_prime_UTR
GCTCCTCAAATCGCCCTCTG+TGG 0.629143 tig0026233:+14002 Msa1427940:intergenic
TTGTCTGCATAACCCTTGAA+GGG 0.631202 tig0026233:+14093 Msa1427940:intergenic
TCATTATCGTTCCAGGATCG+AGG 0.631565 tig0026233:-20499 Msa1427940:CDS
GTGCCTCATACACCCTTCAA+GGG 0.638339 tig0026233:-14105 Msa1427940:three_prime_UTR
AACACCGTTCCGGAACGGCA+CGG 0.638834 tig0026233:+22134 Msa1427940:intergenic
AACAACACACATCTTCTGCA+TGG 0.642554 tig0026233:-20917 Msa1427940:CDS
GCACGATTCCGAATGGAGAG+AGG 0.643389 tig0026233:-19457 Msa1427940:CDS
GACGAGAAATGATGTCGAAG+AGG 0.646283 tig0026233:-20293 Msa1427940:intron
ATACCCTAAAATTCCTTCTG+GGG 0.646521 tig0026233:-19534 Msa1427940:CDS
AATTCAATAGCACTAGATGT+GGG 0.647489 tig0026233:+20082 Msa1427940:intergenic
TGATATCGCTTTCGACACAC+AGG 0.648182 tig0026233:+21194 Msa1427940:intergenic
ATCCTACCTAGAATAAAGAG+AGG 0.648598 tig0026233:-14314 Msa1427940:three_prime_UTR
GATAAGCCGGGATAGTAACA+AGG 0.649319 tig0026233:-14280 Msa1427940:three_prime_UTR
CAAAATCGAGCAAATGACCT+CGG 0.649705 tig0026233:-19779 Msa1427940:CDS
ACGATCCGATCTTAGATCGG+CGG 0.650382 tig0026233:+12823 Msa1427940:intergenic
GGCAGCACAATTAACTCAGG+CGG 0.652831 tig0026233:+19682 Msa1427940:intergenic
GTGGTTCCACCACTGTCACG+TGG 0.653777 tig0026233:+13968 Msa1427940:intergenic
GACAAGGCAAACTCTTAAAG+GGG 0.656461 tig0026233:-20209 Msa1427940:CDS
GGTATGCAGCCAGACACCAC+AGG 0.658046 tig0026233:+19360 Msa1427940:intergenic
TGTGTTAACTCAATCCGTGT+GGG 0.658395 tig0026233:-19280 Msa1427940:CDS
CCAATTTATTGATGCCACTG+TGG 0.663505 tig0026233:+13769 Msa1427940:intergenic
GGCGGCAGAAACATCTCCGG+CGG 0.667647 tig0026233:+22167 Msa1427940:intergenic
ATGTGTTAACTCAATCCGTG+TGG 0.672293 tig0026233:-19281 Msa1427940:CDS
GATGGGCATGTAGATCTGCT+AGG 0.676494 tig0026233:-14067 Msa1427940:three_prime_UTR
AAAGATTAATAGGAAAACAG+TGG 0.680975 tig0026233:-19851 Msa1427940:CDS
CTATGGAAACTAATTCACAT+CGG 0.683546 tig0026233:-12871 Msa1427940:three_prime_UTR
AAGCCTGGTTATCTCCCACA+CGG 0.684838 tig0026233:+19266 Msa1427940:intergenic
ATGGTTGTATCATCAACTTG+AGG 0.693179 tig0026233:-20942 Msa1427940:CDS
AAGAGCTGAAGGCAGCTCCG+AGG 0.699457 tig0026233:+19762 Msa1427940:intergenic
ACCGAAGTCAAGAAGCTCTG+GGG 0.701812 tig0026233:+20165 Msa1427940:intergenic
CGAAGATGCATACAAGATGG+CGG 0.703099 tig0026233:-20551 Msa1427940:CDS
CGGGATAGTAACAAGGACCG+AGG 0.703383 tig0026233:-14273 Msa1427940:three_prime_UTR
TGGAACGATAATGAGGACAG+GGG 0.703505 tig0026233:+20508 Msa1427940:intergenic
CCTACCTAGAATAAAGAGAG+GGG 0.716820 tig0026233:-14312 Msa1427940:three_prime_UTR
ACCGTTCCGGAACGGCACGG+CGG 0.727611 tig0026233:+22137 Msa1427940:intergenic
ATATTGCAGAGATGAAGCGG+TGG 0.735388 tig0026233:-19230 Msa1427940:CDS
ATGTTAGCATGTGATACCTG+TGG 0.742288 tig0026233:-19376 Msa1427940:CDS
CCAGCTTGACTGCACCACAG+AGG 0.744311 tig0026233:-14016 Msa1427940:three_prime_UTR
ATTCACAATCTTAACCACAG+TGG 0.753267 tig0026233:-13783 Msa1427940:three_prime_UTR
CTGTAACAGTCTAACCACTG+TGG 0.758424 tig0026233:+13949 Msa1427940:intergenic
TTGTTGAAGAGGATGTTACG+AGG 0.760276 tig0026233:-21972 Msa1427940:CDS
TGACAGTGGTGGAACCACAG+TGG 0.765043 tig0026233:-13963 Msa1427940:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTTTA+AGG + tig0026233:16153-16172 Msa1427940:intergenic 0.0%
!! AAAAAAAAAAAAAAAAAAAA+AGG - tig0026233:16154-16173 Msa1427940:intron 0.0%
!!! TTTTCTATTTTTTTTTTTTG+GGG - tig0026233:12568-12587 Msa1427940:three_prime_UTR 10.0%
!!! AATATAAAAAATGTGAATTT+TGG - tig0026233:15254-15273 Msa1427940:intron 10.0%
!! ATTCTATTAGAAATTAAATT+AGG - tig0026233:19554-19573 Msa1427940:CDS 10.0%
!!! ATTTTTTCTTTAAAATCAAA+GGG + tig0026233:19830-19849 Msa1427940:intergenic 10.0%
!!! TATTTTTTCTTTAAAATCAA+AGG + tig0026233:19831-19850 Msa1427940:intergenic 10.0%
!!! TATTATGGTAAAATATTTTT+TGG + tig0026233:20194-20213 Msa1427940:intergenic 10.0%
!!! ATTAAGTTTTTGATATAATT+CGG + tig0026233:21524-21543 Msa1427940:intergenic 10.0%
!! AAAAAAAAAAACTGTGATAT+AGG + tig0026233:12669-12688 Msa1427940:intergenic 15.0%
!! TGTTGTTATAATTATGTTAT+AGG - tig0026233:12719-12738 Msa1427940:three_prime_UTR 15.0%
!! TAAATTTAGATTTAAAAAGC+TGG - tig0026233:12898-12917 Msa1427940:three_prime_UTR 15.0%
!!! TATATTTGATCATTTTTTCA+GGG + tig0026233:14560-14579 Msa1427940:intergenic 15.0%
!!! TTTTTGAAGGAAAAAAAAAA+GGG + tig0026233:15591-15610 Msa1427940:intergenic 15.0%
!!! TTTTTTGAAGGAAAAAAAAA+AGG + tig0026233:15592-15611 Msa1427940:intergenic 15.0%
!! TTTATACAAAATAAAACAGA+TGG - tig0026233:15706-15725 Msa1427940:intron 15.0%
!! TTATACAAAATAAAACAGAT+GGG - tig0026233:15707-15726 Msa1427940:intron 15.0%
!!! TATATTTTTCTCAGAATTTT+TGG + tig0026233:16922-16941 Msa1427940:intergenic 15.0%
!!! ATTCTGAGAAAAATATAATA+AGG - tig0026233:16925-16944 Msa1427940:intron 15.0%
!! AAATATAATAAGGATTATTG+TGG - tig0026233:16935-16954 Msa1427940:intron 15.0%
!! TTAATTCACATATATTGTAT+TGG + tig0026233:18982-19001 Msa1427940:intergenic 15.0%
!! TTTACAATTTATTATTGTTG+TGG + tig0026233:19507-19526 Msa1427940:intergenic 15.0%
!! TAAAAACAGATTTATTACAA+CGG - tig0026233:19523-19542 Msa1427940:CDS 15.0%
!! GCTTATGAAATATTAAAAAT+TGG + tig0026233:19611-19630 Msa1427940:intergenic 15.0%
!!! TTTTTTCTTTAAAATCAAAG+GGG + tig0026233:19829-19848 Msa1427940:intergenic 15.0%
!! TAAGCTAATATTATAGATTT+CGG + tig0026233:21415-21434 Msa1427940:intergenic 15.0%
!!! TACTAGTTTATAGATATATT+AGG + tig0026233:21865-21884 Msa1427940:intergenic 15.0%
!!! TTATTGGATTTGTTTAAATT+TGG + tig0026233:21907-21926 Msa1427940:intergenic 15.0%
!!! AGAATTTGAATTTTTGAATT+TGG + tig0026233:22051-22070 Msa1427940:intergenic 15.0%
!!! TTTCAAATTTGCTGTAATTT+AGG - tig0026233:12873-12892 Msa1427940:three_prime_UTR 20.0%
!!! ATTGTGCTATAAATTTTTAC+AGG - tig0026233:13733-13752 Msa1427940:three_prime_UTR 20.0%
!! CATGAACATAATAAATTACA+GGG + tig0026233:14122-14141 Msa1427940:intergenic 20.0%
!!! CTATATTTGATCATTTTTTC+AGG + tig0026233:14561-14580 Msa1427940:intergenic 20.0%
!! AATATAGACCAAAGATTAAT+AGG - tig0026233:14574-14593 Msa1427940:intron 20.0%
!!! TTTTTTATATTACAACGAAC+AGG + tig0026233:15245-15264 Msa1427940:intergenic 20.0%
!! GAAAAAAAAATTTGTCATGA+TGG + tig0026233:15443-15462 Msa1427940:intergenic 20.0%
!!! TCAGGTATTTTTTTTTTTGA+AGG + tig0026233:15604-15623 Msa1427940:intergenic 20.0%
!! AATTAAGCAAAAAAAGAAAG+TGG - tig0026233:15646-15665 Msa1427940:intron 20.0%
!!! TGTTTTAATTAGTTATTCTG+TGG + tig0026233:15839-15858 Msa1427940:intergenic 20.0%
!!! GCAGTGTTTTTTTTTTTTAT+CGG + tig0026233:16222-16241 Msa1427940:intergenic 20.0%
!! TGGTTCAATTAATTAGTATA+AGG + tig0026233:16594-16613 Msa1427940:intergenic 20.0%
!!! AAGTGCATATACTTTTATTT+GGG - tig0026233:17460-17479 Msa1427940:intron 20.0%
!! TGATACTATATTGAAAACTA+TGG + tig0026233:18077-18096 Msa1427940:intergenic 20.0%
!! AATTGAGGAAATAATTTAGA+GGG - tig0026233:19303-19322 Msa1427940:CDS 20.0%
!!! TGAACCTGATTTTTTTTTTT+GGG + tig0026233:19450-19469 Msa1427940:intergenic 20.0%
!!! TTGAACCTGATTTTTTTTTT+TGG + tig0026233:19451-19470 Msa1427940:intergenic 20.0%
!!! AATAATGTCTAAGTTGATAT+TGG + tig0026233:19483-19502 Msa1427940:intergenic 20.0%
!! TATACCATACTTGTAAAAAA+AGG - tig0026233:19578-19597 Msa1427940:CDS 20.0%
!!! TTCCAAAAATGATATTTTCA+GGG + tig0026233:20534-20553 Msa1427940:intergenic 20.0%
!!! ATTCCAAAAATGATATTTTC+AGG + tig0026233:20535-20554 Msa1427940:intergenic 20.0%
!!! AATAATATTTTCAGCTTCAT+TGG + tig0026233:20950-20969 Msa1427940:intergenic 20.0%
!!! ATTTCTGCCAAATAATTTTA+AGG + tig0026233:21252-21271 Msa1427940:intergenic 20.0%
!!! AGATTTGATTTTAGGTTTTT+GGG + tig0026233:21334-21353 Msa1427940:intergenic 20.0%
!!! TAGATTTGATTTTAGGTTTT+TGG + tig0026233:21335-21354 Msa1427940:intergenic 20.0%
!!! ATTGCAATAGATTTGATTTT+AGG + tig0026233:21342-21361 Msa1427940:intergenic 20.0%
!!! ATAATCAATCAATGTTTTCT+TGG + tig0026233:21779-21798 Msa1427940:intergenic 20.0%
!! ATCAATTCACTTGAATTTAT+TGG + tig0026233:21923-21942 Msa1427940:intergenic 20.0%
!!! TCTATTTTTTTTTTTTGGGG+AGG - tig0026233:12571-12590 Msa1427940:three_prime_UTR 25.0%
!!! TTTTTTTTTTGAAACTGCGT+AGG - tig0026233:12681-12700 Msa1427940:three_prime_UTR 25.0%
! ATAGATTACACAAAAGCTAA+AGG - tig0026233:13005-13024 Msa1427940:three_prime_UTR 25.0%
!! TTAGTACTATGATAATGATG+TGG - tig0026233:13113-13132 Msa1427940:three_prime_UTR 25.0%
!! TAGTACTATGATAATGATGT+GGG - tig0026233:13114-13133 Msa1427940:three_prime_UTR 25.0%
!! TTGTTGATGGAAAAAAACAA+AGG - tig0026233:13205-13224 Msa1427940:three_prime_UTR 25.0%
!! TGCTATAAATTTTTACAGGA+AGG - tig0026233:13737-13756 Msa1427940:three_prime_UTR 25.0%
! CCATGAACATAATAAATTAC+AGG + tig0026233:14123-14142 Msa1427940:intergenic 25.0%
! CCTGTAATTTATTATGTTCA+TGG - tig0026233:14120-14139 Msa1427940:three_prime_UTR 25.0%
! GATTATATAAAACATCAGCT+GGG + tig0026233:14430-14449 Msa1427940:intergenic 25.0%
! TTATATAATCCTTGACAGAT+TGG - tig0026233:14440-14459 Msa1427940:intron 25.0%
!! ACTGTTTTCCTATTAATCTT+TGG + tig0026233:14585-14604 Msa1427940:intergenic 25.0%
! AAAGATTAATAGGAAAACAG+TGG - tig0026233:14584-14603 Msa1427940:intron 25.0%
! ATGTATATTTATGAGAGACT+AGG - tig0026233:15302-15321 Msa1427940:intron 25.0%
! TGTATATTTATGAGAGACTA+GGG - tig0026233:15303-15322 Msa1427940:intron 25.0%
! GATTCAAAAAGCAATGATAT+TGG + tig0026233:15467-15486 Msa1427940:intergenic 25.0%
! AAAAAAAAAGGGCAGTTATA+TGG + tig0026233:15580-15599 Msa1427940:intergenic 25.0%
! ATACTAAAACTAAAACAGTC+AGG + tig0026233:15622-15641 Msa1427940:intergenic 25.0%
! TTGTATAAATTTGTGTTCTC+TGG + tig0026233:15695-15714 Msa1427940:intergenic 25.0%
! AAAACAGATGGGTAATTATT+TGG - tig0026233:15718-15737 Msa1427940:intron 25.0%
!! GACATGTAGATTTTAAACAT+GGG + tig0026233:15917-15936 Msa1427940:intergenic 25.0%
!! TGACATGTAGATTTTAAACA+TGG + tig0026233:15918-15937 Msa1427940:intergenic 25.0%
! ACAGGATAAAAAACAGATAT+AGG - tig0026233:15946-15965 Msa1427940:intron 25.0%
! CAGGATAAAAAACAGATATA+GGG - tig0026233:15947-15966 Msa1427940:intron 25.0%
! AGGATAAAAAACAGATATAG+GGG - tig0026233:15948-15967 Msa1427940:intron 25.0%
! TGATAAAAAAACAGAAGTTG+CGG - tig0026233:16126-16145 Msa1427940:intron 25.0%
! TTAAAAATTGAAAGCTGAAG+TGG - tig0026233:16979-16998 Msa1427940:intron 25.0%
! TAAAAATTGAAAGCTGAAGT+GGG - tig0026233:16980-16999 Msa1427940:intron 25.0%
! TCAAGTATGTTCAAACTAAT+CGG + tig0026233:17185-17204 Msa1427940:intergenic 25.0%
!! GAAGTGCATATACTTTTATT+TGG - tig0026233:17459-17478 Msa1427940:intron 25.0%
!!! CATATACTTTTATTTGGGAA+AGG - tig0026233:17465-17484 Msa1427940:intron 25.0%
! ATTCCTTTCACAAATATACA+AGG + tig0026233:17669-17688 Msa1427940:intergenic 25.0%
!! GTTTAATTTCTTACTCTACT+TGG + tig0026233:17752-17771 Msa1427940:intergenic 25.0%
!!! AGTAAGTATGTTCTAAAACA+TGG + tig0026233:17823-17842 Msa1427940:intergenic 25.0%
! AGTAAAACTACTCCTTTAAT+AGG + tig0026233:17862-17881 Msa1427940:intergenic 25.0%
! TATTATGCAAGTTACAATCA+GGG + tig0026233:18007-18026 Msa1427940:intergenic 25.0%
! ATATTATGCAAGTTACAATC+AGG + tig0026233:18008-18027 Msa1427940:intergenic 25.0%
! AAGGATTAACAAGAAAATGA+TGG + tig0026233:18251-18270 Msa1427940:intergenic 25.0%
!! TTTGAAATGATTAAAGCAGA+TGG + tig0026233:18431-18450 Msa1427940:intergenic 25.0%
!! TGAAAAGTGATGAATGTTTT+GGG + tig0026233:18820-18839 Msa1427940:intergenic 25.0%
!!! TCTTAAAATTGATTTGTCCA+TGG - tig0026233:18920-18939 Msa1427940:three_prime_UTR 25.0%
! AAAAGATATAGTTTCCCAAA+AGG + tig0026233:19250-19269 Msa1427940:intergenic 25.0%
! GAATTGAGGAAATAATTTAG+AGG - tig0026233:19302-19321 Msa1427940:CDS 25.0%
!! TGAATATCTATATCCTTTTG+AGG + tig0026233:19416-19435 Msa1427940:intergenic 25.0%
!!! ATATTTTTTGGTAGAATCCT+CGG + tig0026233:20182-20201 Msa1427940:intergenic 25.0%
! ACACAGAGATTATTAACTAT+AGG - tig0026233:20811-20830 Msa1427940:CDS 25.0%
! CACAGAGATTATTAACTATA+GGG - tig0026233:20812-20831 Msa1427940:CDS 25.0%
! TCATTTCTTCTTACTTTATC+AGG - tig0026233:20898-20917 Msa1427940:CDS 25.0%
!! TTTACTTGGAAAAGCTTTTT+AGG + tig0026233:21065-21084 Msa1427940:intergenic 25.0%
! ATTATTTGGCAGAAATCTTT+AGG - tig0026233:21256-21275 Msa1427940:intron 25.0%
!! TGATCTTGTTATGTTGAATT+TGG + tig0026233:21290-21309 Msa1427940:intergenic 25.0%
! TGATACATTTAACAGATCTA+GGG + tig0026233:22021-22040 Msa1427940:intergenic 25.0%
! TTGATACATTTAACAGATCT+AGG + tig0026233:22022-22041 Msa1427940:intergenic 25.0%
! ATTGGATTGAATGAAATTCA+TGG - tig0026233:22148-22167 Msa1427940:CDS 25.0%
! GTTGTTGTAGAATACAAAAT+CGG - tig0026233:22231-22250 Msa1427940:CDS 25.0%
! ATACAAAATCGGTTATTCTT+TGG - tig0026233:22242-22261 Msa1427940:CDS 25.0%
TGAGAGAAAATCGTAAAGAT+CGG + tig0026233:12241-12260 None:intergenic 30.0%
!!! ATTATTTTGATGTACACACC+TGG - tig0026233:12618-12637 Msa1427940:three_prime_UTR 30.0%
! ATACTTTGACTGTTTGTTGA+TGG - tig0026233:13192-13211 Msa1427940:three_prime_UTR 30.0%
TGATGGAAAAAAACAAAGGA+TGG - tig0026233:13209-13228 Msa1427940:three_prime_UTR 30.0%
AGCGATATCACTTCATAATA+AGG - tig0026233:13254-13273 Msa1427940:three_prime_UTR 30.0%
AGTTTGAAGGATTGAAATTG+TGG - tig0026233:13409-13428 Msa1427940:three_prime_UTR 30.0%
ATCTGATATTATGGGTTTCT+GGG - tig0026233:13616-13635 Msa1427940:three_prime_UTR 30.0%
! TTACATTTTGCTTCAGAGTT+TGG - tig0026233:13694-13713 Msa1427940:three_prime_UTR 30.0%
ATGGATTTGTCCAAGAAATT+TGG - tig0026233:13768-13787 Msa1427940:three_prime_UTR 30.0%
ATAATCCAGTCCAAATTTCT+TGG + tig0026233:13781-13800 Msa1427940:intergenic 30.0%
GTAATTGGGGTTATGAATTT+GGG - tig0026233:13841-13860 Msa1427940:three_prime_UTR 30.0%
TATTTCTCTTTACCAGTCAT+TGG - tig0026233:13983-14002 Msa1427940:three_prime_UTR 30.0%
TTGAACCAATTCCAACAAAA+AGG + tig0026233:14045-14064 Msa1427940:intergenic 30.0%
ACATAATAAATTACAGGGAG+TGG + tig0026233:14117-14136 Msa1427940:intergenic 30.0%
AATTCAATAGCACTAGATGT+GGG + tig0026233:14356-14375 Msa1427940:intergenic 30.0%
TTGAATTCAGGTAAGAGTAA+TGG - tig0026233:14369-14388 Msa1427940:three_prime_UTR 30.0%
GAAGCAACTATTCACAAAAA+AGG + tig0026233:14399-14418 Msa1427940:intergenic 30.0%
GGATTATATAAAACATCAGC+TGG + tig0026233:14431-14450 Msa1427940:intergenic 30.0%
TGACTGTAAGCAATTTATGA+AGG - tig0026233:14629-14648 Msa1427940:intron 30.0%
TCAACATTAGTAGCATTCAA+AGG + tig0026233:14777-14796 Msa1427940:intergenic 30.0%
TATACCCTAAAATTCCTTCT+GGG - tig0026233:14900-14919 Msa1427940:intron 30.0%
ACATCTCTTACATACAAACT+TGG + tig0026233:15138-15157 Msa1427940:intergenic 30.0%
! ATGTGTTTAATTTACAAGCC+TGG + tig0026233:15187-15206 Msa1427940:intergenic 30.0%
GTGACAGATAATTTGATCTT+GGG + tig0026233:15550-15569 Msa1427940:intergenic 30.0%
! AAACAGATTTTAAACCAACC+AGG - tig0026233:15756-15775 Msa1427940:intron 30.0%
TTATGCATACTTAACATGAC+TGG + tig0026233:15868-15887 Msa1427940:intergenic 30.0%
CTACATGTCAGATAAAAAAC+AGG - tig0026233:15928-15947 Msa1427940:intron 30.0%
ATAAAAAACAGATATAGGGG+TGG - tig0026233:15951-15970 Msa1427940:intron 30.0%
TAAAAAACAGATATAGGGGT+GGG - tig0026233:15952-15971 Msa1427940:intron 30.0%
!!! GTTTCTGGTTTTCTGTTTTT+AGG + tig0026233:16010-16029 Msa1427940:intergenic 30.0%
! CATCTTTATACATGGTTTTC+TGG + tig0026233:16046-16065 Msa1427940:intergenic 30.0%
CAGAAAACCATGTATAAAGA+TGG - tig0026233:16044-16063 Msa1427940:intron 30.0%
CCTAAATGGTTTCATGAATT+TGG + tig0026233:16095-16114 Msa1427940:intergenic 30.0%
CCAAATTCATGAAACCATTT+AGG - tig0026233:16092-16111 Msa1427940:intron 30.0%
ATGAAACCATTTAGGAAGAT+AGG - tig0026233:16100-16119 Msa1427940:intron 30.0%
! CATACATGGTTTCATGATTT+TGG + tig0026233:16189-16208 Msa1427940:intergenic 30.0%
!!! ACGCTTTTTTCGATTTTAAG+AGG + tig0026233:16248-16267 Msa1427940:intergenic 30.0%
TTTGATTAAGGGTTGTCTAA+TGG + tig0026233:16386-16405 Msa1427940:intergenic 30.0%
CAACAATATTCCAGTACATT+TGG + tig0026233:16458-16477 Msa1427940:intergenic 30.0%
CAAATGTACTGGAATATTGT+TGG - tig0026233:16456-16475 Msa1427940:intron 30.0%
! AATCATCACCAAACTTTTAG+TGG - tig0026233:16547-16566 Msa1427940:intron 30.0%
AAAGGTTACCACTAAAAGTT+TGG + tig0026233:16558-16577 Msa1427940:intergenic 30.0%
TGAACCATTATAATCCTCTT+TGG - tig0026233:16607-16626 Msa1427940:intron 30.0%
GACACATTATAACTGTTGTA+TGG - tig0026233:16871-16890 Msa1427940:intron 30.0%
GACTAAGTTTAACAACATTG+TGG - tig0026233:17086-17105 Msa1427940:intron 30.0%
ACTCAATTTCTAAACTAGTG+TGG + tig0026233:17148-17167 Msa1427940:intergenic 30.0%
TAGTTTAGAAATTGAGTGAC+TGG - tig0026233:17151-17170 Msa1427940:intron 30.0%
AAGTATGTTCAAACTAATCG+GGG + tig0026233:17183-17202 Msa1427940:intergenic 30.0%
CAAGTATGTTCAAACTAATC+GGG + tig0026233:17184-17203 Msa1427940:intergenic 30.0%
!! AGAAAACTGATTTTCAACCA+TGG - tig0026233:17212-17231 Msa1427940:intron 30.0%
ATTAATATACAGGGACTTGT+GGG + tig0026233:17370-17389 Msa1427940:intergenic 30.0%
AATTAATATACAGGGACTTG+TGG + tig0026233:17371-17390 Msa1427940:intergenic 30.0%
TCCCTGTATATTAATTACAG+AGG - tig0026233:17375-17394 Msa1427940:intron 30.0%
CCCTCTGTAATTAATATACA+GGG + tig0026233:17379-17398 Msa1427940:intergenic 30.0%
CCCTGTATATTAATTACAGA+GGG - tig0026233:17376-17395 Msa1427940:intron 30.0%
CCTGTATATTAATTACAGAG+GGG - tig0026233:17377-17396 Msa1427940:intron 30.0%
CTTGTGTAAAAAACAGGATA+AGG + tig0026233:17573-17592 Msa1427940:intergenic 30.0%
!!! TATCCTGTTTTTTACACAAG+AGG - tig0026233:17573-17592 Msa1427940:intron 30.0%
TCACCTTGTATATTTGTGAA+AGG - tig0026233:17663-17682 Msa1427940:intron 30.0%
TTGTAAATCAGAACTTGGAT+GGG - tig0026233:17713-17732 Msa1427940:intron 30.0%
!! TATGTTCTAAAACATGGTCA+GGG + tig0026233:17817-17836 Msa1427940:intergenic 30.0%
CAAAGATACATGCCTATTAA+AGG - tig0026233:17847-17866 Msa1427940:intron 30.0%
ATTATGCAAGTTACAATCAG+GGG + tig0026233:18006-18025 Msa1427940:intergenic 30.0%
! GTCTTCAATTTCTGAGAAAT+TGG - tig0026233:18180-18199 Msa1427940:intron 30.0%
AGATCTTCCGAAATTTATTG+AGG - tig0026233:18313-18332 Msa1427940:intron 30.0%
GATCTTCCGAAATTTATTGA+GGG - tig0026233:18314-18333 Msa1427940:intron 30.0%
! TGTGAAGTTTTCTGCAAATA+TGG - tig0026233:18394-18413 Msa1427940:intron 30.0%
! GAGGAAAAGAATTTTGTTGA+TGG + tig0026233:18666-18685 Msa1427940:intergenic 30.0%
! GTGAAAAGTGATGAATGTTT+TGG + tig0026233:18821-18840 Msa1427940:intergenic 30.0%
GGAAAAGATCAGATCATATT+TGG - tig0026233:18849-18868 Msa1427940:intron 30.0%
! TGGTCAAAGTTTGTTTATAC+CGG - tig0026233:18875-18894 Msa1427940:three_prime_UTR 30.0%
!! AATTGATTTGTCCATGGAAA+AGG - tig0026233:18926-18945 Msa1427940:three_prime_UTR 30.0%
CTAGAAATTAACAGACCAAA+AGG - tig0026233:19058-19077 Msa1427940:three_prime_UTR 30.0%
! ATTCTTTTCAGAAAGCCTTT+TGG + tig0026233:19076-19095 Msa1427940:intergenic 30.0%
ATATAGTTTCCCAAAAGGTA+GGG + tig0026233:19245-19264 Msa1427940:intergenic 30.0%
GGAACTGAAAAAATGAATTG+AGG - tig0026233:19288-19307 Msa1427940:CDS 30.0%
TTAATGAGTGTTATACGAAG+CGG + tig0026233:19363-19382 Msa1427940:intergenic 30.0%
!!! TGATTTTTTTTTTTGGGTGG+GGG + tig0026233:19444-19463 Msa1427940:intergenic 30.0%
!!! CTGATTTTTTTTTTTGGGTG+GGG + tig0026233:19445-19464 Msa1427940:intergenic 30.0%
!!! CCTGATTTTTTTTTTTGGGT+GGG + tig0026233:19446-19465 Msa1427940:intergenic 30.0%
!!! ACCTGATTTTTTTTTTTGGG+TGG + tig0026233:19447-19466 Msa1427940:intergenic 30.0%
!!! CTAGCCTTTTTTTACAAGTA+TGG + tig0026233:19585-19604 Msa1427940:intergenic 30.0%
TTCATAAGCCACATAATATC+TGG - tig0026233:19622-19641 Msa1427940:CDS 30.0%
AAGTTGAACCAGATATTATG+TGG + tig0026233:19633-19652 Msa1427940:intergenic 30.0%
! ACATAATATCTGGTTCAACT+TGG - tig0026233:19632-19651 Msa1427940:CDS 30.0%
! CATAATATCTGGTTCAACTT+GGG - tig0026233:19633-19652 Msa1427940:CDS 30.0%
CAGAGCCAATGAAATAAAAT+GGG - tig0026233:19869-19888 Msa1427940:CDS 30.0%
!! CCAATCCCATTTTATTTCAT+TGG + tig0026233:19877-19896 Msa1427940:intergenic 30.0%
CCAATGAAATAAAATGGGAT+TGG - tig0026233:19874-19893 Msa1427940:CDS 30.0%
GAAATAAAATGGGATTGGAA+AGG - tig0026233:19879-19898 Msa1427940:CDS 30.0%
GCTATTCTTTATATGTTGAG+TGG + tig0026233:19953-19972 Msa1427940:intergenic 30.0%
CTCATTCACTATTTCAATCA+AGG - tig0026233:20084-20103 Msa1427940:CDS 30.0%
GTCGAAAAAATTAAGTACAG+TGG + tig0026233:20234-20253 Msa1427940:intergenic 30.0%
!! AAAATGATATTTTCAGGGTC+AGG + tig0026233:20529-20548 Msa1427940:intergenic 30.0%
! GACCCTGAAAATATCATTTT+TGG - tig0026233:20529-20548 Msa1427940:CDS 30.0%
GAATTAATCACGTGATAGAT+TGG + tig0026233:20636-20655 Msa1427940:intergenic 30.0%
TAAATCTGATTACCTGAAGT+TGG + tig0026233:20724-20743 Msa1427940:intergenic 30.0%
ACCATTCAAATTTCATTCAG+TGG - tig0026233:20765-20784 Msa1427940:intron 30.0%
ACCACTGAATGAAATTTGAA+TGG + tig0026233:20769-20788 Msa1427940:intergenic 30.0%
GATTATTAACTATAGGGCAT+CGG - tig0026233:20818-20837 Msa1427940:CDS 30.0%
ATTGAGAATATGGGTTTACT+TGG + tig0026233:21079-21098 Msa1427940:intergenic 30.0%
AAGTAAACCCATATTCTCAA+TGG - tig0026233:21078-21097 Msa1427940:intron 30.0%
TCAACAACCATTGAGAATAT+GGG + tig0026233:21088-21107 Msa1427940:intergenic 30.0%
TTCAACAACCATTGAGAATA+TGG + tig0026233:21089-21108 Msa1427940:intergenic 30.0%
CGCAACTCCTTAAAATTATT+TGG - tig0026233:21242-21261 Msa1427940:intron 30.0%
! TCGATATCATGTTAGGTTTT+AGG - tig0026233:21482-21501 Msa1427940:intron 30.0%
! CGATATCATGTTAGGTTTTA+GGG - tig0026233:21483-21502 Msa1427940:intron 30.0%
CTATGGAAACTAATTCACAT+CGG - tig0026233:21564-21583 Msa1427940:intron 30.0%
GAGAAGAATGCTTAACTTAT+TGG - tig0026233:22130-22149 Msa1427940:CDS 30.0%
TACTCTTGACATTGTTGAAG+AGG - tig0026233:12452-12471 Msa1427940:three_prime_UTR 35.0%
AATATACATACAGTAGAGCC+AGG + tig0026233:12639-12658 Msa1427940:intergenic 35.0%
CAAAGTTAACCACTATGGTT+TGG + tig0026233:12960-12979 Msa1427940:intergenic 35.0%
CAAACCATAGTGGTTAACTT+TGG - tig0026233:12958-12977 Msa1427940:three_prime_UTR 35.0%
AACTCCAAAGTTAACCACTA+TGG + tig0026233:12965-12984 Msa1427940:intergenic 35.0%
GTTACCTTGCTTCAGATAAT+TGG + tig0026233:13339-13358 Msa1427940:intergenic 35.0%
! CTTCACACTGTTGTTTGATT+GGG - tig0026233:13380-13399 Msa1427940:three_prime_UTR 35.0%
GATTGGGATAAGTAGTTTGA+AGG - tig0026233:13396-13415 Msa1427940:three_prime_UTR 35.0%
! TTGTGGTTTGATATTTCTGC+AGG - tig0026233:13426-13445 Msa1427940:three_prime_UTR 35.0%
ATGGTTGTATCATCAACTTG+AGG - tig0026233:13493-13512 Msa1427940:three_prime_UTR 35.0%
GTTGTACATGCTAATGGTTA+TGG - tig0026233:13542-13561 Msa1427940:three_prime_UTR 35.0%
CTTACTCTTAATGGAAGAGA+AGG - tig0026233:13572-13591 Msa1427940:three_prime_UTR 35.0%
GAAACCCATAATATCAGATC+CGG + tig0026233:13615-13634 Msa1427940:intergenic 35.0%
GATCTGATATTATGGGTTTC+TGG - tig0026233:13615-13634 Msa1427940:three_prime_UTR 35.0%
!! ATATTATGGGTTTCTGGGAT+AGG - tig0026233:13621-13640 Msa1427940:three_prime_UTR 35.0%
TTTGTCCAAGAAATTTGGAC+TGG - tig0026233:13773-13792 Msa1427940:three_prime_UTR 35.0%
GCATTCATGGTATGGTAATT+GGG - tig0026233:13827-13846 Msa1427940:three_prime_UTR 35.0%
CATTCATGGTATGGTAATTG+GGG - tig0026233:13828-13847 Msa1427940:three_prime_UTR 35.0%
GGTAATTGGGGTTATGAATT+TGG - tig0026233:13840-13859 Msa1427940:three_prime_UTR 35.0%
GAGAAATAACAGACTGTACA+GGG + tig0026233:13971-13990 Msa1427940:intergenic 35.0%
AGAGAAATAACAGACTGTAC+AGG + tig0026233:13972-13991 Msa1427940:intergenic 35.0%
! AGATCTCTTCTCCTTTTTGT+TGG - tig0026233:14031-14050 Msa1427940:three_prime_UTR 35.0%
! CTTCTCCTTTTTGTTGGAAT+TGG - tig0026233:14037-14056 Msa1427940:three_prime_UTR 35.0%
! TTCAAAATTTTCGTAAGCCC+AGG - tig0026233:14060-14079 Msa1427940:three_prime_UTR 35.0%
TGACAAGGCAAACTCTTAAA+GGG - tig0026233:14225-14244 Msa1427940:three_prime_UTR 35.0%
GAAATCAGTTGCAAATGGAA+TGG - tig0026233:14310-14329 Msa1427940:three_prime_UTR 35.0%
GAATTCAATAGCACTAGATG+TGG + tig0026233:14357-14376 Msa1427940:intergenic 35.0%
! CATCTAGTGCTATTGAATTC+AGG - tig0026233:14357-14376 Msa1427940:three_prime_UTR 35.0%
ATCAGAAATCACTTGCTCTT+TGG + tig0026233:14508-14527 Msa1427940:intergenic 35.0%
ACCATATCCTAGAAGTTTCA+CGG + tig0026233:14862-14881 Msa1427940:intergenic 35.0%
GTATACCCTAAAATTCCTTC+TGG - tig0026233:14899-14918 Msa1427940:intron 35.0%
ATACCCTAAAATTCCTTCTG+GGG - tig0026233:14901-14920 Msa1427940:intron 35.0%
TTGAACTTCAACTGTACCAT+TGG + tig0026233:14931-14950 Msa1427940:intergenic 35.0%
AATGGTACAGTTGAAGTTCA+AGG - tig0026233:14930-14949 Msa1427940:intron 35.0%
CTCTTACATACAAACTTGGA+AGG + tig0026233:15134-15153 Msa1427940:intergenic 35.0%
TGTTATGCTGGATTTATCCA+AGG - tig0026233:15331-15350 Msa1427940:intron 35.0%
AAATACTCAAGCTCTGTTCT+TGG - tig0026233:15493-15512 Msa1427940:intron 35.0%
GGTGACAGATAATTTGATCT+TGG + tig0026233:15551-15570 Msa1427940:intergenic 35.0%
CAGATGGGTAATTATTTGGT+AGG - tig0026233:15722-15741 Msa1427940:intron 35.0%
AACCATGTATAAAGATGGTC+TGG - tig0026233:16049-16068 Msa1427940:intron 35.0%
TACCAGACCATCTTTATACA+TGG + tig0026233:16054-16073 Msa1427940:intergenic 35.0%
TCAGAACCTATCTTCCTAAA+TGG + tig0026233:16109-16128 Msa1427940:intergenic 35.0%
CAGAAATGATGAAACCATGT+AGG - tig0026233:16270-16289 Msa1427940:intron 35.0%
AAATGATGAAACCATGTAGG+AGG - tig0026233:16273-16292 Msa1427940:intron 35.0%
AATGATGAAACCATGTAGGA+GGG - tig0026233:16274-16293 Msa1427940:intron 35.0%
TAACTCTGATGAGAAAGAAG+TGG + tig0026233:16320-16339 Msa1427940:intergenic 35.0%
GAGAGGATGCATTTGATTAA+GGG + tig0026233:16397-16416 Msa1427940:intergenic 35.0%
TGAGAGGATGCATTTGATTA+AGG + tig0026233:16398-16417 Msa1427940:intergenic 35.0%
CAATATTCCAGTACATTTGG+AGG + tig0026233:16455-16474 Msa1427940:intergenic 35.0%
TCCTTAGTTGTTCTCAACAT+GGG - tig0026233:16498-16517 Msa1427940:intron 35.0%
CACACCAAAGAGGATTATAA+TGG + tig0026233:16614-16633 Msa1427940:intergenic 35.0%
CATTATAATCCTCTTTGGTG+TGG - tig0026233:16612-16631 Msa1427940:intron 35.0%
AATACCCATTTGCAGCAAAT+AGG - tig0026233:16635-16654 Msa1427940:intron 35.0%
!! AAAAGCACTCATAGGCTTTA+TGG - tig0026233:16765-16784 Msa1427940:intron 35.0%
! AAAGCACTCATAGGCTTTAT+GGG - tig0026233:16766-16785 Msa1427940:intron 35.0%
TATGGGAGGTGAAATAATCA+AGG - tig0026233:16783-16802 Msa1427940:intron 35.0%
TAAGTTGCAATTCAGGTCAT+AGG + tig0026233:16819-16838 Msa1427940:intergenic 35.0%
ACAGTCATAAGTTGCAATTC+AGG + tig0026233:16826-16845 Msa1427940:intergenic 35.0%
TGCAACTTATGACTGTTGTA+CGG - tig0026233:16830-16849 Msa1427940:intron 35.0%
TTATAACTGTTGTATGGCCT+TGG - tig0026233:16877-16896 Msa1427940:intron 35.0%
GAGAAATGCATAATCCCAAT+AGG - tig0026233:17030-17049 Msa1427940:intron 35.0%
AGTATGTTCAAACTAATCGG+GGG + tig0026233:17182-17201 Msa1427940:intergenic 35.0%
CTATCAGCAATTCAAAACCA+TGG + tig0026233:17232-17251 Msa1427940:intergenic 35.0%
ATGCATTCGCTAGATTTAGT+TGG + tig0026233:17293-17312 Msa1427940:intergenic 35.0%
GTACTATATAAACCCAGTAG+TGG - tig0026233:17326-17345 Msa1427940:intron 35.0%
TTAATATACAGGGACTTGTG+GGG + tig0026233:17369-17388 Msa1427940:intergenic 35.0%
CCCCTCTGTAATTAATATAC+AGG + tig0026233:17380-17399 Msa1427940:intergenic 35.0%
GTACAATACACCAAAATGGT+GGG + tig0026233:17546-17565 Msa1427940:intergenic 35.0%
ATGCGTTGTAAATCAGAACT+TGG - tig0026233:17708-17727 Msa1427940:intron 35.0%
GTTGTAAATCAGAACTTGGA+TGG - tig0026233:17712-17731 Msa1427940:intron 35.0%
AAACTACTTGAAATCCAGTC+AGG - tig0026233:17768-17787 Msa1427940:intron 35.0%
AACTACTTGAAATCCAGTCA+GGG - tig0026233:17769-17788 Msa1427940:intron 35.0%
GATCATCTAGAAAGAAGAGA+GGG + tig0026233:17795-17814 Msa1427940:intergenic 35.0%
!! GTATGTTCTAAAACATGGTC+AGG + tig0026233:17818-17837 Msa1427940:intergenic 35.0%
!! GTAGTTTTACTCAAGCTTGT+AGG - tig0026233:17871-17890 Msa1427940:intron 35.0%
TTGGTTGCAGTTAGTTACAA+GGG + tig0026233:17930-17949 Msa1427940:intergenic 35.0%
TTTGGTTGCAGTTAGTTACA+AGG + tig0026233:17931-17950 Msa1427940:intergenic 35.0%
TGACGGAAAAATTTGCATTG+GGG + tig0026233:18122-18141 Msa1427940:intergenic 35.0%
! GTGACGGAAAAATTTGCATT+GGG + tig0026233:18123-18142 Msa1427940:intergenic 35.0%
! TGTGACGGAAAAATTTGCAT+TGG + tig0026233:18124-18143 Msa1427940:intergenic 35.0%
! CAAATTTTTCCGTCACATAC+CGG - tig0026233:18127-18146 Msa1427940:intron 35.0%
CTCAGAAATTGAAGACCAAA+GGG + tig0026233:18176-18195 Msa1427940:intergenic 35.0%
TCTCAGAAATTGAAGACCAA+AGG + tig0026233:18177-18196 Msa1427940:intergenic 35.0%
! AATTGGACTCTGAAAACTAC+AGG - tig0026233:18197-18216 Msa1427940:intron 35.0%
! AGCTTATGAGCTTTAATCAC+AGG + tig0026233:18228-18247 Msa1427940:intergenic 35.0%
GATGCATTTCACAGTATCTA+AGG + tig0026233:18270-18289 Msa1427940:intergenic 35.0%
AAATTTCGGAAGATCTACAC+AGG + tig0026233:18309-18328 Msa1427940:intergenic 35.0%
CCATAGCCCTCAATAAATTT+CGG + tig0026233:18323-18342 Msa1427940:intergenic 35.0%
! CTATTTGGAGTTGTGTAAAG+AGG + tig0026233:18479-18498 Msa1427940:intergenic 35.0%
! GGAAATGAGTAGTTGCTATT+TGG + tig0026233:18494-18513 Msa1427940:intergenic 35.0%
ATAGCAACTACTCATTTCCT+TGG - tig0026233:18495-18514 Msa1427940:intron 35.0%
!! ATGAATGTTTTGGGCATTTG+TGG + tig0026233:18811-18830 Msa1427940:intergenic 35.0%
! ATCTGATCTTTTCCTTCGAA+TGG + tig0026233:18843-18862 Msa1427940:intergenic 35.0%
TTTGTTTATACCGGTCAATC+TGG - tig0026233:18884-18903 Msa1427940:three_prime_UTR 35.0%
! AAATGCTACATCCTTTTCCA+TGG + tig0026233:18940-18959 Msa1427940:intergenic 35.0%
ATCTCATGAAGTTGTACCAA+TGG + tig0026233:19035-19054 Msa1427940:intergenic 35.0%
! TCCAACATACCACATTTTAG+AGG - tig0026233:19101-19120 Msa1427940:three_prime_UTR 35.0%
! CCAACATACCACATTTTAGA+GGG - tig0026233:19102-19121 Msa1427940:three_prime_UTR 35.0%
!!! TCGTTTTTCCCTCTAAAATG+TGG + tig0026233:19113-19132 Msa1427940:intergenic 35.0%
! GAAAGAAGAGGAAGGATTTT+GGG - tig0026233:19201-19220 Msa1427940:CDS 35.0%
! AAAGAAGAGGAAGGATTTTG+GGG - tig0026233:19202-19221 Msa1427940:CDS 35.0%
GATATAGTTTCCCAAAAGGT+AGG + tig0026233:19246-19265 Msa1427940:intergenic 35.0%
!!! TTTTTTCAGTTCCTCCAAAC+TGG + tig0026233:19281-19300 Msa1427940:intergenic 35.0%
CCCACCCAAAAAAAAAAATC+AGG - tig0026233:19443-19462 Msa1427940:CDS 35.0%
!!! CCATTTTATTTCATTGGCTC+TGG + tig0026233:19871-19890 Msa1427940:intergenic 35.0%
CCAGAGCCAATGAAATAAAA+TGG - tig0026233:19868-19887 Msa1427940:CDS 35.0%
!! GAAAAGAAGTTGGTACAGTA+AGG + tig0026233:19905-19924 Msa1427940:intergenic 35.0%
CTTCGTGATATTAAAGTCCA+TGG + tig0026233:20053-20072 Msa1427940:intergenic 35.0%
ATCCTACCTAGAATAAAGAG+AGG - tig0026233:20121-20140 Msa1427940:CDS 35.0%
TCCTACCTAGAATAAAGAGA+GGG - tig0026233:20122-20141 Msa1427940:CDS 35.0%
CTGCTACAAAAGGGATATTA+TGG + tig0026233:20209-20228 Msa1427940:intergenic 35.0%
GAGAGAAGAAAAAGAGAAGA+GGG + tig0026233:20301-20320 Msa1427940:intergenic 35.0%
TGAGAGAAGAAAAAGAGAAG+AGG + tig0026233:20302-20321 Msa1427940:intergenic 35.0%
GTTAGACTGTTACAGGAATT+AGG - tig0026233:20494-20513 Msa1427940:CDS 35.0%
ATTCACAATCTTAACCACAG+TGG - tig0026233:20652-20671 Msa1427940:CDS 35.0%
ATGACTCAAATTCCAACTTC+AGG - tig0026233:20709-20728 Msa1427940:intron 35.0%
CAGGTAATCAGATTTAGACT+AGG - tig0026233:20728-20747 Msa1427940:intron 35.0%
GTTTATTGCAGTCAATAGCT+TGG + tig0026233:20793-20812 Msa1427940:intergenic 35.0%
!!! GAAAAGCTTTTTAGGATGCA+TGG + tig0026233:21057-21076 Msa1427940:intergenic 35.0%
!! ACTTGATTTGTTGCTTTAGC+AGG + tig0026233:21206-21225 Msa1427940:intergenic 35.0%
!! GGCAGAAATCTTTAGGTTTT+TGG - tig0026233:21263-21282 Msa1427940:intron 35.0%
ACTATTGCGATTGTGATCTA+GGG + tig0026233:21457-21476 Msa1427940:intergenic 35.0%
GTCAACTTCGATATCATGTT+AGG - tig0026233:21475-21494 Msa1427940:intron 35.0%
GATTGCAAACTCAAGAACTA+TGG - tig0026233:21547-21566 Msa1427940:intron 35.0%
TTAACGATCCGATCTTAGAT+CGG + tig0026233:21618-21637 Msa1427940:intergenic 35.0%
AATCACACATCTACACATTC+GGG + tig0026233:21711-21730 Msa1427940:intergenic 35.0%
CAATCACACATCTACACATT+CGG + tig0026233:21712-21731 Msa1427940:intergenic 35.0%
CATTGATGAACACTAATCAC+AGG + tig0026233:21833-21852 Msa1427940:intergenic 35.0%
!! CTTCTTTTGACTCGCTTAGT+GGG + tig0026233:12210-12229 None:intergenic 40.0%
!! TCTTCTTTTGACTCGCTTAG+TGG + tig0026233:12211-12230 None:intergenic 40.0%
TTGCATGATCAGACAGAAAC+CGG + tig0026233:12329-12348 Msa1427940:intergenic 40.0%
ATCAGAGAAGGAAAAAGCTC+AGG + tig0026233:12366-12385 Msa1427940:intergenic 40.0%
!! TTTTTCCTTCTCTGATGACG+TGG - tig0026233:12370-12389 Msa1427940:three_prime_UTR 40.0%
TTGTTTCGTGTTGGAGAAGT+TGG - tig0026233:12399-12418 Msa1427940:three_prime_UTR 40.0%
TTGTTGAAGAGGATGTTACG+AGG - tig0026233:12463-12482 Msa1427940:three_prime_UTR 40.0%
TGTGATCAATGTCGTGTTGT+TGG - tig0026233:12501-12520 Msa1427940:three_prime_UTR 40.0%
GAATCGTTGAGTCAGATTCT+CGG - tig0026233:12530-12549 Msa1427940:three_prime_UTR 40.0%
AAAGTCAGACCAAACCATAG+TGG - tig0026233:12948-12967 Msa1427940:three_prime_UTR 40.0%
!! GGTTGGTGGATATGGAATTA+TGG - tig0026233:13153-13172 Msa1427940:three_prime_UTR 40.0%
AGGTCTTTGATATGCTGCAT+TGG + tig0026233:13293-13312 Msa1427940:intergenic 40.0%
CAAAGACCTTGCACTAAATG+TGG - tig0026233:13304-13323 Msa1427940:three_prime_UTR 40.0%
CTTGCTTCAGATAATTGGAG+AGG + tig0026233:13334-13353 Msa1427940:intergenic 40.0%
! CTCTCCAATTATCTGAAGCA+AGG - tig0026233:13332-13351 Msa1427940:three_prime_UTR 40.0%
CAAACAACAGTGTGAAGGTA+AGG + tig0026233:13377-13396 Msa1427940:intergenic 40.0%
CCAATCAAACAACAGTGTGA+AGG + tig0026233:13382-13401 Msa1427940:intergenic 40.0%
! CCTTCACACTGTTGTTTGAT+TGG - tig0026233:13379-13398 Msa1427940:three_prime_UTR 40.0%
CATTTCTGCTGATGATCTTG+AGG - tig0026233:13469-13488 Msa1427940:three_prime_UTR 40.0%
AACAACACACATCTTCTGCA+TGG - tig0026233:13518-13537 Msa1427940:three_prime_UTR 40.0%
!! CATGGTGTTGTACATGCTAA+TGG - tig0026233:13536-13555 Msa1427940:three_prime_UTR 40.0%
GGTCACTTGCTTACTCTTAA+TGG - tig0026233:13563-13582 Msa1427940:three_prime_UTR 40.0%
ACTCTTAATGGAAGAGAAGG+TGG - tig0026233:13575-13594 Msa1427940:three_prime_UTR 40.0%
TCTCTCCGGATCTGATATTA+TGG - tig0026233:13607-13626 Msa1427940:three_prime_UTR 40.0%
CTCTCCGGATCTGATATTAT+GGG - tig0026233:13608-13627 Msa1427940:three_prime_UTR 40.0%
! TTTGTGCTGCTATGTCTGTT+AGG - tig0026233:13645-13664 Msa1427940:three_prime_UTR 40.0%
TTACAGGAAGGTTACTGTGA+TGG - tig0026233:13749-13768 Msa1427940:three_prime_UTR 40.0%
GGCATTCATGGTATGGTAAT+TGG - tig0026233:13826-13845 Msa1427940:three_prime_UTR 40.0%
TACCGAAGATGCATACAAGA+TGG - tig0026233:13881-13900 Msa1427940:three_prime_UTR 40.0%
GTGACAAGGCAAACTCTTAA+AGG - tig0026233:14224-14243 Msa1427940:three_prime_UTR 40.0%
GACAAGGCAAACTCTTAAAG+GGG - tig0026233:14226-14245 Msa1427940:three_prime_UTR 40.0%
CAAGGGAAATCAGTTGCAAA+TGG - tig0026233:14305-14324 Msa1427940:three_prime_UTR 40.0%
GCAATGGAGCTTAATCCATT+AGG + tig0026233:14474-14493 Msa1427940:intergenic 40.0%
GAAATCACTTGCTCTTTGGA+AGG + tig0026233:14504-14523 Msa1427940:intergenic 40.0%
CTTACAGTCAAGAAGCTTTC+TGG + tig0026233:14619-14638 Msa1427940:intergenic 40.0%
CAAAATCGAGCAAATGACCT+CGG - tig0026233:14656-14675 Msa1427940:intron 40.0%
AAAGGCAGCACAATTAACTC+AGG + tig0026233:14759-14778 Msa1427940:intergenic 40.0%
! GACCTTTTGAATGAAGTCAC+TGG - tig0026233:14795-14814 Msa1427940:intron 40.0%
CACCAGTGACTTCATTCAAA+AGG + tig0026233:14800-14819 Msa1427940:intergenic 40.0%
TTTGTAGCCGTGAAACTTCT+AGG - tig0026233:14852-14871 Msa1427940:intron 40.0%
TTAGGGTATACACACGATCT+CGG + tig0026233:14890-14909 Msa1427940:intergenic 40.0%
! TGACCCCAGAAGGAATTTTA+GGG + tig0026233:14907-14926 Msa1427940:intergenic 40.0%
! TTGACCCCAGAAGGAATTTT+AGG + tig0026233:14908-14927 Msa1427940:intergenic 40.0%
!!! GTGCTAAGCCATTTTTAGCT+GGG + tig0026233:14962-14981 Msa1427940:intergenic 40.0%
TGACTGCATTTGTGGTACTA+AGG - tig0026233:15019-15038 Msa1427940:intron 40.0%
TGTGGTACTAAGGATGATGA+TGG - tig0026233:15029-15048 Msa1427940:intron 40.0%
!! CTAAGGATGATGATGGAGAA+AGG - tig0026233:15036-15055 Msa1427940:intron 40.0%
ATGTTAGCATGTGATACCTG+TGG - tig0026233:15059-15078 Msa1427940:intron 40.0%
ATGTGTTAACTCAATCCGTG+TGG - tig0026233:15154-15173 Msa1427940:intron 40.0%
TGTGTTAACTCAATCCGTGT+GGG - tig0026233:15155-15174 Msa1427940:intron 40.0%
CACATATTGCAGAGATGAAG+CGG - tig0026233:15202-15221 Msa1427940:intron 40.0%
AATCTCTGGTACAGAATCCT+TGG + tig0026233:15351-15370 Msa1427940:intergenic 40.0%
! AACTGTCTGGAATCAATCTC+TGG + tig0026233:15365-15384 Msa1427940:intergenic 40.0%
AGAGACAAAGTTCAACTGTC+TGG + tig0026233:15378-15397 Msa1427940:intergenic 40.0%
TGTGTAAGACTTCCACAAAG+TGG + tig0026233:15788-15807 Msa1427940:intergenic 40.0%
!!! GGTTTTAGAACTGCAGTTTC+TGG + tig0026233:16025-16044 Msa1427940:intergenic 40.0%
GGTTTCATGAATTTGGCTAC+TGG + tig0026233:16088-16107 Msa1427940:intergenic 40.0%
!!! GGTTTCATGATTTTGGCTAC+TGG + tig0026233:16182-16201 Msa1427940:intergenic 40.0%
TCGGAGCATATCTTCATACA+TGG + tig0026233:16203-16222 Msa1427940:intergenic 40.0%
ATGATGAAACCATGTAGGAG+GGG - tig0026233:16275-16294 Msa1427940:intron 40.0%
GAAGTGGAGAACATGAGAAA+TGG + tig0026233:16304-16323 Msa1427940:intergenic 40.0%
ACATTTGGAGGAAAAGGGTT+GGG + tig0026233:16443-16462 Msa1427940:intergenic 40.0%
TACATTTGGAGGAAAAGGGT+TGG + tig0026233:16444-16463 Msa1427940:intergenic 40.0%
CCAGTACATTTGGAGGAAAA+GGG + tig0026233:16448-16467 Msa1427940:intergenic 40.0%
TCCAGTACATTTGGAGGAAA+AGG + tig0026233:16449-16468 Msa1427940:intergenic 40.0%
TATTGTTGGCCAAGAAGTTC+AGG - tig0026233:16470-16489 Msa1427940:intron 40.0%
GTCCTTAGTTGTTCTCAACA+TGG - tig0026233:16497-16516 Msa1427940:intron 40.0%
CCTTAGTTGTTCTCAACATG+GGG - tig0026233:16499-16518 Msa1427940:intron 40.0%
TAGTGGTAACCTTTGCAACT+AGG - tig0026233:16564-16583 Msa1427940:intron 40.0%
! AGCTCCTATTTGCTGCAAAT+GGG + tig0026233:16642-16661 Msa1427940:intergenic 40.0%
!! ATCTGGAGAAAAGCACTCAT+AGG - tig0026233:16757-16776 Msa1427940:intron 40.0%
! GTGTCTGTTTTCTTTTGCCA+GGG + tig0026233:16856-16875 Msa1427940:intergenic 40.0%
! TGTGTCTGTTTTCTTTTGCC+AGG + tig0026233:16857-16876 Msa1427940:intergenic 40.0%
! ATGGCCTTGGCAAAAGAAAA+CGG - tig0026233:16890-16909 Msa1427940:intron 40.0%
AGGATTATTGTGGAAGAGTG+TGG - tig0026233:16945-16964 Msa1427940:intron 40.0%
AAGTGGGAAGTCTATTGATG+AGG - tig0026233:16996-17015 Msa1427940:intron 40.0%
GCATAATCCCAATAGGCAAA+AGG - tig0026233:17037-17056 Msa1427940:intron 40.0%
GTATGTTCAAACTAATCGGG+GGG + tig0026233:17181-17200 Msa1427940:intergenic 40.0%
TCTAGCGAATGCATCAACAA+AGG - tig0026233:17299-17318 Msa1427940:intron 40.0%
!! AAACCCAGTAGTGGATGTAA+AGG - tig0026233:17335-17354 Msa1427940:intron 40.0%
!! AACCCAGTAGTGGATGTAAA+GGG - tig0026233:17336-17355 Msa1427940:intron 40.0%
!! TAATTACAGAGGGGCACTAT+AGG - tig0026233:17386-17405 Msa1427940:intron 40.0%
GTGGTACTAGATGAATGAGA+GGG - tig0026233:17408-17427 Msa1427940:intron 40.0%
! ATATGCACTTCCTGTCGTTT+GGG + tig0026233:17450-17469 Msa1427940:intergenic 40.0%
TATATGCACTTCCTGTCGTT+TGG + tig0026233:17451-17470 Msa1427940:intergenic 40.0%
CGTACAATACACCAAAATGG+TGG + tig0026233:17547-17566 Msa1427940:intergenic 40.0%
CTGCGTACAATACACCAAAA+TGG + tig0026233:17550-17569 Msa1427940:intergenic 40.0%
CAGCCTCTTGTGTAAAAAAC+AGG + tig0026233:17579-17598 Msa1427940:intergenic 40.0%
GGATCATCTAGAAAGAAGAG+AGG + tig0026233:17796-17815 Msa1427940:intergenic 40.0%
ACTGACACATGTCAGTCATT+TGG + tig0026233:17949-17968 Msa1427940:intergenic 40.0%
GTCAAGCTATTTATGAGGCT+AGG + tig0026233:17984-18003 Msa1427940:intergenic 40.0%
AAAATTTGCATTGGGGTCGT+TGG + tig0026233:18115-18134 Msa1427940:intergenic 40.0%
AGAAATTGAAGACCAAAGGG+AGG + tig0026233:18173-18192 Msa1427940:intergenic 40.0%
CCGAAATTTATTGAGGGCTA+TGG - tig0026233:18320-18339 Msa1427940:intron 40.0%
!! TAAAGCAGATGGAAGCATCA+TGG + tig0026233:18420-18439 Msa1427940:intergenic 40.0%
!! ATACAAGAAGGTGTTTGCCA+AGG + tig0026233:18572-18591 Msa1427940:intergenic 40.0%
ATGGAGAACATGCCTTGATA+AGG + tig0026233:18647-18666 Msa1427940:intergenic 40.0%
AGATTGAGGAGATGCCATAA+GGG + tig0026233:18708-18727 Msa1427940:intergenic 40.0%
! GAATTTTCAGCAAGCATCTG+AGG + tig0026233:18734-18753 Msa1427940:intergenic 40.0%
!! CATCACTTTTCACCATTCGA+AGG - tig0026233:18828-18847 Msa1427940:intron 40.0%
GATCAGATCATATTTGGCAG+TGG - tig0026233:18855-18874 Msa1427940:three_prime_UTR 40.0%
!! CCCTCTAAAATGTGGTATGT+TGG + tig0026233:19105-19124 Msa1427940:intergenic 40.0%
AAAGACCATGCCTTTCGTTT+GGG - tig0026233:19168-19187 Msa1427940:exon 40.0%
TAAATCCCAAACGAAAGGCA+TGG + tig0026233:19176-19195 Msa1427940:intergenic 40.0%
! ATGCCTTTCGTTTGGGATTT+AGG - tig0026233:19175-19194 Msa1427940:CDS 40.0%
CTTCCTAAATCCCAAACGAA+AGG + tig0026233:19181-19200 Msa1427940:intergenic 40.0%
! CTTTCGTTTGGGATTTAGGA+AGG - tig0026233:19179-19198 Msa1427940:CDS 40.0%
GGATTTAGGAAGGAAAGAAG+AGG - tig0026233:19189-19208 Msa1427940:CDS 40.0%
TTAGGAAGGAAAGAAGAGGA+AGG - tig0026233:19193-19212 Msa1427940:CDS 40.0%
! GGAAAGAAGAGGAAGGATTT+TGG - tig0026233:19200-19219 Msa1427940:CDS 40.0%
! TCTTTTCAGATCCACCAGTT+TGG - tig0026233:19264-19283 Msa1427940:CDS 40.0%
!!! TCTATATCCTTTTGAGGCGA+AGG + tig0026233:19410-19429 Msa1427940:intergenic 40.0%
GTTGTGGGTTTGAGTCATAA+GGG - tig0026233:19778-19797 Msa1427940:CDS 40.0%
TTGTGGGTTTGAGTCATAAG+GGG - tig0026233:19779-19798 Msa1427940:CDS 40.0%
TTTGAGTCATAAGGGGTAAG+TGG - tig0026233:19786-19805 Msa1427940:CDS 40.0%
TGGTTCAAGGGAAAAGAAGT+TGG + tig0026233:19915-19934 Msa1427940:intergenic 40.0%
TGTCTTGGTAAGTGGTTCAA+GGG + tig0026233:19927-19946 Msa1427940:intergenic 40.0%
TTGTCTTGGTAAGTGGTTCA+AGG + tig0026233:19928-19947 Msa1427940:intergenic 40.0%
TATGTTGAGTGGAGTTGTCT+TGG + tig0026233:19942-19961 Msa1427940:intergenic 40.0%
!! ATGGATACTCTATAGTGGGT+GGG + tig0026233:20034-20053 Msa1427940:intergenic 40.0%
GTCCATGGATACTCTATAGT+GGG + tig0026233:20038-20057 Msa1427940:intergenic 40.0%
AGTCCATGGATACTCTATAG+TGG + tig0026233:20039-20058 Msa1427940:intergenic 40.0%
CCTACCTAGAATAAAGAGAG+GGG - tig0026233:20123-20142 Msa1427940:CDS 40.0%
TCAACCCCTCTCTTTATTCT+AGG + tig0026233:20130-20149 Msa1427940:intergenic 40.0%
GGGGTTGAAAAATGATAAGC+CGG - tig0026233:20142-20161 Msa1427940:CDS 40.0%
GGGTTGAAAAATGATAAGCC+GGG - tig0026233:20143-20162 Msa1427940:CDS 40.0%
TTGTCTGCATAACCCTTGAA+GGG + tig0026233:20345-20364 Msa1427940:intergenic 40.0%
ATTGTCTGCATAACCCTTGA+AGG + tig0026233:20346-20365 Msa1427940:intergenic 40.0%
GGTTATGCAGACAATGTGAT+GGG - tig0026233:20351-20370 Msa1427940:CDS 40.0%
TCACGTGATAGATTGGAAGT+TGG + tig0026233:20629-20648 Msa1427940:intergenic 40.0%
CCAATTTATTGATGCCACTG+TGG + tig0026233:20669-20688 Msa1427940:intergenic 40.0%
CCACAGTGGCATCAATAAAT+TGG - tig0026233:20666-20685 Msa1427940:CDS 40.0%
GACTATTGCGATTGTGATCT+AGG + tig0026233:21458-21477 Msa1427940:intergenic 40.0%
TCACATCGGAATCACACATT+CGG - tig0026233:21578-21597 Msa1427940:intron 40.0%
! CAGACGTTCAGATTCTAGTT+AGG + tig0026233:21663-21682 Msa1427940:intergenic 40.0%
CATCTACACATTCGGGATAT+TGG + tig0026233:21704-21723 Msa1427940:intergenic 40.0%
GTAATTCTGTAACCTAGCTC+TGG + tig0026233:21757-21776 Msa1427940:intergenic 40.0%
AAGAAGCTTGGAGATTTGAG+AGG - tig0026233:22185-22204 Msa1427940:CDS 40.0%
CAACAGTTTCGTCAACATCA+AGG + tig0026233:22215-22234 Msa1427940:intergenic 40.0%
GGTTTCTGTCTGATCATGCA+AGG - tig0026233:12328-12347 Msa1427940:three_prime_UTR 45.0%
AGAGAAGGAAAAAGCTCAGG+AGG + tig0026233:12363-12382 Msa1427940:intergenic 45.0%
! TGGCAGATCTTGTTTCGTGT+TGG - tig0026233:12390-12409 Msa1427940:three_prime_UTR 45.0%
AGGTGATGTTTCGTCTGGTT+TGG - tig0026233:12428-12447 Msa1427940:three_prime_UTR 45.0%
GAGTCAGATTCTCGGTTCTT+AGG - tig0026233:12538-12557 Msa1427940:three_prime_UTR 45.0%
TGATGTGGGATCATGTGATG+TGG - tig0026233:13128-13147 Msa1427940:three_prime_UTR 45.0%
GATCATGTGATGTGGTTGGT+TGG - tig0026233:13136-13155 Msa1427940:three_prime_UTR 45.0%
!! ATGTGGTTGGTTGGTGGATA+TGG - tig0026233:13145-13164 Msa1427940:three_prime_UTR 45.0%
TGATATCGCTTTCGACACAC+AGG + tig0026233:13244-13263 Msa1427940:intergenic 45.0%
GGAGTTCCACATTTAGTGCA+AGG + tig0026233:13313-13332 Msa1427940:intergenic 45.0%
CTGCTGATGATCTTGAGGAA+TGG - tig0026233:13474-13493 Msa1427940:three_prime_UTR 45.0%
TTGCTTCATGCAATTGCCAG+AGG - tig0026233:13804-13823 Msa1427940:three_prime_UTR 45.0%
TGCTTCATGCAATTGCCAGA+GGG - tig0026233:13805-13824 Msa1427940:three_prime_UTR 45.0%
! TGGGGTTATGAATTTGGGAC+TGG - tig0026233:13846-13865 Msa1427940:three_prime_UTR 45.0%
CGCCATCTTGTATGCATCTT+CGG + tig0026233:13886-13905 Msa1427940:intergenic 45.0%
CGAAGATGCATACAAGATGG+CGG - tig0026233:13884-13903 Msa1427940:three_prime_UTR 45.0%
TGGAACGATAATGAGGACAG+GGG + tig0026233:13930-13949 Msa1427940:intergenic 45.0%
CTGGAACGATAATGAGGACA+GGG + tig0026233:13931-13950 Msa1427940:intergenic 45.0%
TCGATCCTGGAACGATAATG+AGG + tig0026233:13937-13956 Msa1427940:intergenic 45.0%
TCATTATCGTTCCAGGATCG+AGG - tig0026233:13936-13955 Msa1427940:three_prime_UTR 45.0%
ACAGACTGTACAGGGTTATG+AGG + tig0026233:13963-13982 Msa1427940:intergenic 45.0%
GTTCAGTTTCAGCCAATGAC+TGG + tig0026233:13998-14017 Msa1427940:intergenic 45.0%
GACGAGAAATGATGTCGAAG+AGG - tig0026233:14142-14161 Msa1427940:three_prime_UTR 45.0%
TGCATCAAGTGCCTGTAATG+AGG - tig0026233:14193-14212 Msa1427940:three_prime_UTR 45.0%
TGCCTGTAATGAGGCCAAAT+GGG - tig0026233:14202-14221 Msa1427940:three_prime_UTR 45.0%
AGTTTGCCTTGTCACCCATT+TGG + tig0026233:14219-14238 Msa1427940:intergenic 45.0%
CAAACTCTTAAAGGGGCAGT+GGG - tig0026233:14233-14252 Msa1427940:three_prime_UTR 45.0%
TTCGGTCTTAAGCACTTGCA+AGG - tig0026233:14287-14306 Msa1427940:three_prime_UTR 45.0%
TCGGTCTTAAGCACTTGCAA+GGG - tig0026233:14288-14307 Msa1427940:three_prime_UTR 45.0%
! AGATTGGCTCATGTGCCTAA+TGG - tig0026233:14456-14475 Msa1427940:intron 45.0%
! TTTGGAAGGATGGCTTGCAA+TGG + tig0026233:14490-14509 Msa1427940:intergenic 45.0%
! TCACTTGCTCTTTGGAAGGA+TGG + tig0026233:14500-14519 Msa1427940:intergenic 45.0%
TGCCTTCAGCTCTTAAGATC+TGG - tig0026233:14682-14701 Msa1427940:intron 45.0%
CACCAGATCTTAAGAGCTGA+AGG + tig0026233:14687-14706 Msa1427940:intergenic 45.0%
! ATGGGTGGTCTTCTTTAGGA+TGG + tig0026233:14728-14747 Msa1427940:intergenic 45.0%
!! GCCGTGAAACTTCTAGGATA+TGG - tig0026233:14858-14877 Msa1427940:intron 45.0%
TAGGGTATACACACGATCTC+GGG + tig0026233:14889-14908 Msa1427940:intergenic 45.0%
GGAGAATGCCCAGCTAAAAA+TGG - tig0026233:14951-14970 Msa1427940:intron 45.0%
!!! CGTGCTAAGCCATTTTTAGC+TGG + tig0026233:14963-14982 Msa1427940:intergenic 45.0%
CTTCTGTTCCTCTCTCCATT+CGG + tig0026233:14989-15008 Msa1427940:intergenic 45.0%
TGGAGAGAGGAACAGAAGAA+TGG - tig0026233:14991-15010 Msa1427940:intron 45.0%
GAGAGGAACAGAAGAATGGA+AGG - tig0026233:14995-15014 Msa1427940:intron 45.0%
TGGAAGGTTGACTGCATTTG+TGG - tig0026233:15011-15030 Msa1427940:intron 45.0%
ACTGTCAATTCCAGCACATC+TGG + tig0026233:15099-15118 Msa1427940:intergenic 45.0%
!! CTGGAATTGACAGTGCTGAT+GGG - tig0026233:15105-15124 Msa1427940:intron 45.0%
ATATTGCAGAGATGAAGCGG+TGG - tig0026233:15205-15224 Msa1427940:intron 45.0%
AGGGCAGTTATATGGCATCA+TGG + tig0026233:15572-15591 Msa1427940:intergenic 45.0%
CTTACACAAGTGCAGTGCAT+CGG - tig0026233:15800-15819 Msa1427940:intron 45.0%
AAATGGTTTCCCCTCCTACA+TGG + tig0026233:16287-16306 Msa1427940:intergenic 45.0%
! CCCTTTTCCTCCAAATGTAC+TGG - tig0026233:16445-16464 Msa1427940:intron 45.0%
AGGACAACTCCTGAACTTCT+TGG + tig0026233:16482-16501 Msa1427940:intergenic 45.0%
CCCCATGTTGAGAACAACTA+AGG + tig0026233:16502-16521 Msa1427940:intergenic 45.0%
TAAGGCTTGCCTAGTTGCAA+AGG + tig0026233:16576-16595 Msa1427940:intergenic 45.0%
ATGGGTATTCCACACCAAAG+AGG + tig0026233:16624-16643 Msa1427940:intergenic 45.0%
! GAGCTCCTATTTGCTGCAAA+TGG + tig0026233:16643-16662 Msa1427940:intergenic 45.0%
CAAATAGGAGCTCTGTCAAG+AGG - tig0026233:16650-16669 Msa1427940:intron 45.0%
CATTGCTCCAGAACAAAACC+TGG + tig0026233:16691-16710 Msa1427940:intergenic 45.0%
! TGGCCTTGGCAAAAGAAAAC+GGG - tig0026233:16891-16910 Msa1427940:intron 45.0%
! TTGTGGAAGAGTGTGGTGTA+AGG - tig0026233:16952-16971 Msa1427940:intron 45.0%
! AGCTCTGCCTTTTGCCTATT+GGG + tig0026233:17047-17066 Msa1427940:intergenic 45.0%
! ACATTGTGGTAGTGAGTGTG+AGG - tig0026233:17100-17119 Msa1427940:intron 45.0%
CTCCCTTTACATCCACTACT+GGG + tig0026233:17341-17360 Msa1427940:intergenic 45.0%
GGTGGTACTAGATGAATGAG+AGG - tig0026233:17407-17426 Msa1427940:intron 45.0%
ACTAAAGCTCTTGCATACGC+AGG - tig0026233:17507-17526 Msa1427940:intron 45.0%
CTAAAGCTCTTGCATACGCA+GGG - tig0026233:17508-17527 Msa1427940:intron 45.0%
! TTACACAAGAGGCTGTTTCC+AGG - tig0026233:17584-17603 Msa1427940:intron 45.0%
GTTGTTGTCACGTGACTGAA+AGG + tig0026233:17624-17643 Msa1427940:intergenic 45.0%
CTTGGATGGGCAAATCTAGA+AGG - tig0026233:17726-17745 Msa1427940:intron 45.0%
CAGGGGTCAAGCTATTTATG+AGG + tig0026233:17989-18008 Msa1427940:intergenic 45.0%
TAGTACTGCGGAGTAGAGTA+TGG + tig0026233:18605-18624 Msa1427940:intergenic 45.0%
TACTCTACTCCGCAGTACTA+TGG - tig0026233:18605-18624 Msa1427940:intron 45.0%
!! TGATAAGGCATAGCTCTGGA+GGG + tig0026233:18632-18651 Msa1427940:intergenic 45.0%
!! TTGATAAGGCATAGCTCTGG+AGG + tig0026233:18633-18652 Msa1427940:intergenic 45.0%
TCCAGAGCTATGCCTTATCA+AGG - tig0026233:18632-18651 Msa1427940:intron 45.0%
GATTGAGGAGATGCCATAAG+GGG + tig0026233:18707-18726 Msa1427940:intergenic 45.0%
GAGATTGAGGAGATGCCATA+AGG + tig0026233:18709-18728 Msa1427940:intergenic 45.0%
!! ACACTACTAGCTCTGTGAAC+TGG - tig0026233:18756-18775 Msa1427940:intron 45.0%
TTTGGGCATTTGTGGTCACA+TGG + tig0026233:18803-18822 Msa1427940:intergenic 45.0%
AAAGCAGAGCTCATCATCGA+GGG + tig0026233:19012-19031 Msa1427940:intergenic 45.0%
TGATGAGCTCTGCTTTCCAT+TGG - tig0026233:19016-19035 Msa1427940:three_prime_UTR 45.0%
CAAAGACCATGCCTTTCGTT+TGG - tig0026233:19167-19186 Msa1427940:exon 45.0%
!!! AGGAAGGATTTTGGGGTGAA+AGG - tig0026233:19209-19228 Msa1427940:CDS 45.0%
!!! GGAAGGATTTTGGGGTGAAA+GGG - tig0026233:19210-19229 Msa1427940:CDS 45.0%
! AGGATTGCTCCCTACCTTTT+GGG - tig0026233:19233-19252 Msa1427940:CDS 45.0%
TTTCAGATCCACCAGTTTGG+AGG - tig0026233:19267-19286 Msa1427940:CDS 45.0%
TTTCAGTTCCTCCAAACTGG+TGG + tig0026233:19278-19297 Msa1427940:intergenic 45.0%
GTTCAACTTGGGTTCCATGA+GGG - tig0026233:19644-19663 Msa1427940:CDS 45.0%
ACAACAAAGTGCAGCCTAGT+TGG - tig0026233:19730-19749 Msa1427940:CDS 45.0%
GACTCAAACCCACAACCATT+GGG + tig0026233:19774-19793 Msa1427940:intergenic 45.0%
TGACTCAAACCCACAACCAT+TGG + tig0026233:19775-19794 Msa1427940:intergenic 45.0%
GGTTGTGGGTTTGAGTCATA+AGG - tig0026233:19777-19796 Msa1427940:CDS 45.0%
AGTGGAGTTGTCTTGGTAAG+TGG + tig0026233:19935-19954 Msa1427940:intergenic 45.0%
ACTGTTGAAGAGATCAGTGG+AGG + tig0026233:20007-20026 Msa1427940:intergenic 45.0%
GCTACTGTTGAAGAGATCAG+TGG + tig0026233:20010-20029 Msa1427940:intergenic 45.0%
! CATGGATACTCTATAGTGGG+TGG + tig0026233:20035-20054 Msa1427940:intergenic 45.0%
! CACCCACTATAGAGTATCCA+TGG - tig0026233:20033-20052 Msa1427940:intron 45.0%
CCCCTCTCTTTATTCTAGGT+AGG + tig0026233:20126-20145 Msa1427940:intergenic 45.0%
GATAAGCCGGGATAGTAACA+AGG - tig0026233:20155-20174 Msa1427940:CDS 45.0%
AGATCTTGCCATGCTGAGAT+GGG + tig0026233:20269-20288 Msa1427940:intergenic 45.0%
AAGATCTTGCCATGCTGAGA+TGG + tig0026233:20270-20289 Msa1427940:intergenic 45.0%
! TAACCCTTGAAGGGTGTATG+AGG + tig0026233:20336-20355 Msa1427940:intergenic 45.0%
GGGTTATGCAGACAATGTGA+TGG - tig0026233:20350-20369 Msa1427940:CDS 45.0%
GATTTGAGGAGCAAAAAGCC+TGG - tig0026233:20444-20463 Msa1427940:intron 45.0%
CTGTAACAGTCTAACCACTG+TGG + tig0026233:20489-20508 Msa1427940:intergenic 45.0%
CACAGTGGTTAGACTGTTAC+AGG - tig0026233:20487-20506 Msa1427940:CDS 45.0%
! GTGATCTAGGGTTAGCAGTT+TGG + tig0026233:21445-21464 Msa1427940:intergenic 45.0%
!!! TTTTTTCTATTTTTTTTTTT+TGG - tig0026233:12566-12585 Msa1427940:three_prime_UTR 5.0%
!!! TTTTTCTATTTTTTTTTTTT+GGG - tig0026233:12567-12586 Msa1427940:three_prime_UTR 5.0%
!!! TCTTTAATTTTTATTTTTAA+TGG + tig0026233:19146-19165 Msa1427940:intergenic 5.0%
TTTCTCTCATTCCCAACCGC+CGG - tig0026233:12252-12271 Msa1427940:three_prime_UTR 50.0%
GAAACCGGTAAACACCGTTC+CGG + tig0026233:12314-12333 Msa1427940:intergenic 50.0%
ATCTGCCACGTCATCAGAGA+AGG + tig0026233:12378-12397 Msa1427940:intergenic 50.0%
!! CGTGTTGGAGAAGTTGGTGA+TGG - tig0026233:12405-12424 Msa1427940:three_prime_UTR 50.0%
!! GTTGGAGAAGTTGGTGATGG+AGG - tig0026233:12408-12427 Msa1427940:three_prime_UTR 50.0%
GATGGAGGTGATGTTTCGTC+TGG - tig0026233:12423-12442 Msa1427940:three_prime_UTR 50.0%
AAGAGGATGTTACGAGGTCG+AGG - tig0026233:12469-12488 Msa1427940:three_prime_UTR 50.0%
GTGGGATCATGTGATGTGGT+TGG - tig0026233:13132-13151 Msa1427940:three_prime_UTR 50.0%
! CATGTGATGTGGTTGGTTGG+TGG - tig0026233:13139-13158 Msa1427940:three_prime_UTR 50.0%
!! CAATTGCCAGAGGGCATTCA+TGG - tig0026233:13814-13833 Msa1427940:three_prime_UTR 50.0%
ACCATACCATGAATGCCCTC+TGG + tig0026233:13823-13842 Msa1427940:intergenic 50.0%
! TAATGAGGACAGGGGCATGT+TGG + tig0026233:13922-13941 Msa1427940:intergenic 50.0%
CCTGGAACGATAATGAGGAC+AGG + tig0026233:13932-13951 Msa1427940:intergenic 50.0%
CCTGTCCTCATTATCGTTCC+AGG - tig0026233:13929-13948 Msa1427940:three_prime_UTR 50.0%
TTAGCAGTCTCTGCACTCCT+GGG + tig0026233:14080-14099 Msa1427940:intergenic 50.0%
TTTAGCAGTCTCTGCACTCC+TGG + tig0026233:14081-14100 Msa1427940:intergenic 50.0%
GTGCCTGTAATGAGGCCAAA+TGG - tig0026233:14201-14220 Msa1427940:three_prime_UTR 50.0%
CACCCATTTGGCCTCATTAC+AGG + tig0026233:14207-14226 Msa1427940:intergenic 50.0%
ATGAGGCCAAATGGGTGACA+AGG - tig0026233:14210-14229 Msa1427940:three_prime_UTR 50.0%
GCAAACTCTTAAAGGGGCAG+TGG - tig0026233:14232-14251 Msa1427940:three_prime_UTR 50.0%
TCCCCAGAGCTTCTTGACTT+CGG - tig0026233:14269-14288 Msa1427940:three_prime_UTR 50.0%
ACCGAAGTCAAGAAGCTCTG+GGG + tig0026233:14273-14292 Msa1427940:intergenic 50.0%
GACCGAAGTCAAGAAGCTCT+GGG + tig0026233:14274-14293 Msa1427940:intergenic 50.0%
AGACCGAAGTCAAGAAGCTC+TGG + tig0026233:14275-14294 Msa1427940:intergenic 50.0%
GCACATGAGCCAATCTGTCA+AGG + tig0026233:14452-14471 Msa1427940:intergenic 50.0%
!! GGTGATGGGTGGTCTTCTTT+AGG + tig0026233:14732-14751 Msa1427940:intergenic 50.0%
TTAACTCAGGCGGTGGTGAT+GGG + tig0026233:14746-14765 Msa1427940:intergenic 50.0%
ATTAACTCAGGCGGTGGTGA+TGG + tig0026233:14747-14766 Msa1427940:intergenic 50.0%
AGCACAATTAACTCAGGCGG+TGG + tig0026233:14753-14772 Msa1427940:intergenic 50.0%
GGCAGCACAATTAACTCAGG+CGG + tig0026233:14756-14775 Msa1427940:intergenic 50.0%
!! TTCCTTCTGGGGTCAACCAA+TGG - tig0026233:14912-14931 Msa1427940:intron 50.0%
! TACCATTGGTTGACCCCAGA+AGG + tig0026233:14917-14936 Msa1427940:intergenic 50.0%
TGGCTTAGCACGATTCCGAA+TGG - tig0026233:14971-14990 Msa1427940:intron 50.0%
CATGTGATACCTGTGGTGTC+TGG - tig0026233:15066-15085 Msa1427940:intron 50.0%
! GCTGGAATTGACAGTGCTGA+TGG - tig0026233:15104-15123 Msa1427940:intron 50.0%
AATCCGTGTGGGAGATAACC+AGG - tig0026233:15166-15185 Msa1427940:intron 50.0%
AAGCCTGGTTATCTCCCACA+CGG + tig0026233:15172-15191 Msa1427940:intergenic 50.0%
ACTAGGGTCTCGTGTTATGC+TGG - tig0026233:15319-15338 Msa1427940:intron 50.0%
CAAAGTGGTTGTCTCCTGGT+TGG + tig0026233:15773-15792 Msa1427940:intergenic 50.0%
ACCAGGAGACAACCACTTTG+TGG - tig0026233:15773-15792 Msa1427940:intron 50.0%
TCCACAAAGTGGTTGTCTCC+TGG + tig0026233:15777-15796 Msa1427940:intergenic 50.0%
ATGCATCCTCTCAAGTCACC+AGG - tig0026233:16405-16424 Msa1427940:intron 50.0%
TGCATCCTCTCAAGTCACCA+GGG - tig0026233:16406-16425 Msa1427940:intron 50.0%
AAAAGGGTTGGGAGCTCATC+AGG + tig0026233:16432-16451 Msa1427940:intergenic 50.0%
GGAGCTCTGTCAAGAGGTAA+AGG - tig0026233:16656-16675 Msa1427940:intron 50.0%
AGGTAAAGGAACCAGTGTCC+AGG - tig0026233:16670-16689 Msa1427940:intron 50.0%
CCAGAACAAAACCTGGACAC+TGG + tig0026233:16684-16703 Msa1427940:intergenic 50.0%
!!! CCAGTGTCCAGGTTTTGTTC+TGG - tig0026233:16681-16700 Msa1427940:intron 50.0%
CAAGACAGCTAGAGATCCGA+AGG - tig0026233:16729-16748 Msa1427940:intron 50.0%
! GCACTCATAGGCTTTATGGG+AGG - tig0026233:16769-16788 Msa1427940:intron 50.0%
TTATGACTGTTGTACGGCCC+TGG - tig0026233:16836-16855 Msa1427940:intron 50.0%
! GTGCCCGTTTTCTTTTGCCA+AGG + tig0026233:16897-16916 Msa1427940:intergenic 50.0%
! CAGCTCTGCCTTTTGCCTAT+TGG + tig0026233:17048-17067 Msa1427940:intergenic 50.0%
AGGCAAAAGGCAGAGCTGTT+TGG - tig0026233:17050-17069 Msa1427940:intron 50.0%
GGCAAAAGGCAGAGCTGTTT+GGG - tig0026233:17051-17070 Msa1427940:intron 50.0%
CAGAGCTGTTTGGGCAAGTA+AGG - tig0026233:17060-17079 Msa1427940:intron 50.0%
GCTCCCTTTACATCCACTAC+TGG + tig0026233:17342-17361 Msa1427940:intergenic 50.0%
!! TTACAGAGGGGCACTATAGG+TGG - tig0026233:17389-17408 Msa1427940:intron 50.0%
! TGGAAAGGGTCCCACCATTT+TGG - tig0026233:17533-17552 Msa1427940:intron 50.0%
TCACGTGACTGAAAGGTCAC+GGG + tig0026233:17617-17636 Msa1427940:intergenic 50.0%
GTCACGTGACTGAAAGGTCA+CGG + tig0026233:17618-17637 Msa1427940:intergenic 50.0%
CAAGGTGAGACTTGACGCAA+CGG + tig0026233:17651-17670 Msa1427940:intergenic 50.0%
ATTGAGGGCTATGGTGAACG+AGG - tig0026233:18329-18348 Msa1427940:intron 50.0%
TATGGTGAACGAGGTGGTCT+TGG - tig0026233:18338-18357 Msa1427940:intron 50.0%
GTACAAGCTTGGGTCTTCCA+AGG + tig0026233:18515-18534 Msa1427940:intergenic 50.0%
TTGGGTCAGGGTACAAGCTT+GGG + tig0026233:18525-18544 Msa1427940:intergenic 50.0%
!! AGGTTGTGGGAAGGTACCTT+GGG + tig0026233:18543-18562 Msa1427940:intergenic 50.0%
CACCTTCTTGTATGCTCCCT+TGG - tig0026233:18579-18598 Msa1427940:intron 50.0%
GCCTTGATAAGGCATAGCTC+TGG + tig0026233:18636-18655 Msa1427940:intergenic 50.0%
!! ATAAGGGGAGGCATCATGGA+GGG + tig0026233:18692-18711 Msa1427940:intergenic 50.0%
AGCATCTGAGGACGAGATTG+AGG + tig0026233:18722-18741 Msa1427940:intergenic 50.0%
ATGCGAAGAGCCAGATTGAC+CGG + tig0026233:18897-18916 Msa1427940:intergenic 50.0%
GAAAGCAGAGCTCATCATCG+AGG + tig0026233:19013-19032 Msa1427940:intergenic 50.0%
!!! AGGATTTTGGGGTGAAAGGG+AGG - tig0026233:19213-19232 Msa1427940:CDS 50.0%
! GAGGATTGCTCCCTACCTTT+TGG - tig0026233:19232-19251 Msa1427940:CDS 50.0%
GTTATACGAAGCGGCTGAGA+GGG + tig0026233:19354-19373 Msa1427940:intergenic 50.0%
TGTTATACGAAGCGGCTGAG+AGG + tig0026233:19355-19374 Msa1427940:intergenic 50.0%
TCACAAGCCTTCGCCTCAAA+AGG - tig0026233:19400-19419 Msa1427940:CDS 50.0%
GGTTCAACTTGGGTTCCATG+AGG - tig0026233:19643-19662 Msa1427940:CDS 50.0%
AACTTGGGTTCCATGAGGGA+TGG - tig0026233:19648-19667 Msa1427940:CDS 50.0%
ACTTGGGTTCCATGAGGGAT+GGG - tig0026233:19649-19668 Msa1427940:CDS 50.0%
ATTTGCTTCCCCATCCCTCA+TGG + tig0026233:19661-19680 Msa1427940:intergenic 50.0%
! GGTGAAGCGTCTTACCAACT+AGG + tig0026233:19747-19766 Msa1427940:intergenic 50.0%
TCACCTACACCCAATGGTTG+TGG - tig0026233:19762-19781 Msa1427940:CDS 50.0%
CACCTACACCCAATGGTTGT+GGG - tig0026233:19763-19782 Msa1427940:CDS 50.0%
AACCCACAACCATTGGGTGT+AGG + tig0026233:19768-19787 Msa1427940:intergenic 50.0%
CTCGGTCCTTGTTACTATCC+CGG + tig0026233:20164-20183 Msa1427940:intergenic 50.0%
ACAGTGGCGCTGCTACAAAA+GGG + tig0026233:20218-20237 Msa1427940:intergenic 50.0%
TACAGTGGCGCTGCTACAAA+AGG + tig0026233:20219-20238 Msa1427940:intergenic 50.0%
TCTCTTCTCCCATCTCAGCA+TGG - tig0026233:20258-20277 Msa1427940:intron 50.0%
GTGCCTCATACACCCTTCAA+GGG - tig0026233:20330-20349 Msa1427940:CDS 50.0%
GATGGGCATGTAGATCTGCT+AGG - tig0026233:20368-20387 Msa1427940:CDS 50.0%
! AGTGACCGCCGATCTAAGAT+CGG - tig0026233:21607-21626 Msa1427940:intron 50.0%
ACGATCCGATCTTAGATCGG+CGG + tig0026233:21615-21634 Msa1427940:intergenic 50.0%
CAGAAACATCTCCGGCGGTT+GGG + tig0026233:12266-12285 Msa1427940:intergenic 55.0%
CGGTAAACACCGTTCCGGAA+CGG + tig0026233:12309-12328 Msa1427940:intergenic 55.0%
CGTTCCGGAACGGTGTTTAC+CGG - tig0026233:12307-12326 Msa1427940:three_prime_UTR 55.0%
!! GCCAGAGGGCATTCATGGTA+TGG - tig0026233:13819-13838 Msa1427940:three_prime_UTR 55.0%
GGTTATGAGGTCCTCGATCC+TGG + tig0026233:13950-13969 Msa1427940:intergenic 55.0%
! TGATGTCGAAGAGGTGCAGC+AGG - tig0026233:14151-14170 Msa1427940:three_prime_UTR 55.0%
! GGTGCAGCAGGCTTTGATGA+AGG - tig0026233:14163-14182 Msa1427940:three_prime_UTR 55.0%
CTCTTAAAGGGGCAGTGGGT+AGG - tig0026233:14237-14256 Msa1427940:three_prime_UTR 55.0%
GCACGATTCCGAATGGAGAG+AGG - tig0026233:14978-14997 Msa1427940:intron 55.0%
TGGCTGCATACCAGATGTGC+TGG - tig0026233:15086-15105 Msa1427940:intron 55.0%
ATACGACCTGTGATGCTGCG+AGG - tig0026233:16342-16361 Msa1427940:intron 55.0%
TACGACCTGTGATGCTGCGA+GGG - tig0026233:16343-16362 Msa1427940:intron 55.0%
GACAGCTAGAGATCCGAAGG+CGG - tig0026233:16732-16751 Msa1427940:intron 55.0%
ACAGCTAGAGATCCGAAGGC+GGG - tig0026233:16733-16752 Msa1427940:intron 55.0%
TTTCTCCAGATGCCCGCCTT+CGG + tig0026233:16748-16767 Msa1427940:intergenic 55.0%
GTCGTTTGGGCAAAGCACAC+AGG + tig0026233:17437-17456 Msa1427940:intergenic 55.0%
GTGTGCTTTGCCCAAACGAC+AGG - tig0026233:17437-17456 Msa1427940:intron 55.0%
TGCATACGCAGGGTCTGGAA+AGG - tig0026233:17518-17537 Msa1427940:intron 55.0%
GCATACGCAGGGTCTGGAAA+GGG - tig0026233:17519-17538 Msa1427940:intron 55.0%
AAGGTCACGGGTTCAAGTCC+TGG + tig0026233:17605-17624 Msa1427940:intergenic 55.0%
AAAGAAGAGAGGGCCCTGAC+TGG + tig0026233:17785-17804 Msa1427940:intergenic 55.0%
GACGACTCTCCGGTATGTGA+CGG + tig0026233:18139-18158 Msa1427940:intergenic 55.0%
CACATACCGGAGAGTCGTCT+TGG - tig0026233:18140-18159 Msa1427940:intron 55.0%
!! ACGAGGTGGTCTTGGTGATG+TGG - tig0026233:18346-18365 Msa1427940:intron 55.0%
!! TGGTCTTGGTGATGTGGCAG+AGG - tig0026233:18352-18371 Msa1427940:intron 55.0%
!! TCTTGGTGATGTGGCAGAGG+TGG - tig0026233:18355-18374 Msa1427940:intron 55.0%
CTTGGGTCAGGGTACAAGCT+TGG + tig0026233:18526-18545 Msa1427940:intergenic 55.0%
CAAGCTTGTACCCTGACCCA+AGG - tig0026233:18524-18543 Msa1427940:intron 55.0%
!! TGGGAAGGTACCTTGGGTCA+GGG + tig0026233:18537-18556 Msa1427940:intergenic 55.0%
!! GAGGTTGTGGGAAGGTACCT+TGG + tig0026233:18544-18563 Msa1427940:intergenic 55.0%
!! GAAGGTGTTTGCCAAGGCAG+AGG + tig0026233:18566-18585 Msa1427940:intergenic 55.0%
! GGCCAAGGGAGCATACAAGA+AGG + tig0026233:18584-18603 Msa1427940:intergenic 55.0%
GCGGAGTAGAGTATGGCCAA+GGG + tig0026233:18598-18617 Msa1427940:intergenic 55.0%
TGCGGAGTAGAGTATGGCCA+AGG + tig0026233:18599-18618 Msa1427940:intergenic 55.0%
CTGGAGGGACCATAGTACTG+CGG + tig0026233:18617-18636 Msa1427940:intergenic 55.0%
!! TAAGGGGAGGCATCATGGAG+GGG + tig0026233:18691-18710 Msa1427940:intergenic 55.0%
!! CATAAGGGGAGGCATCATGG+AGG + tig0026233:18693-18712 Msa1427940:intergenic 55.0%
CTCCATGATGCCTCCCCTTA+TGG - tig0026233:18691-18710 Msa1427940:intron 55.0%
!! TGCCATAAGGGGAGGCATCA+TGG + tig0026233:18696-18715 Msa1427940:intergenic 55.0%
TGAGGAGATGCCATAAGGGG+AGG + tig0026233:18704-18723 Msa1427940:intergenic 55.0%
CTTGGGTTCCATGAGGGATG+GGG - tig0026233:19650-19669 Msa1427940:CDS 55.0%
GACGCTTCACCTACACCCAA+TGG - tig0026233:19756-19775 Msa1427940:CDS 55.0%
CGGGATAGTAACAAGGACCG+AGG - tig0026233:20162-20181 Msa1427940:CDS 55.0%
CGTGCCTCATACACCCTTCA+AGG - tig0026233:20329-20348 Msa1427940:CDS 55.0%
GGCAGCACACGTAACAGAGT+TGG - tig0026233:20389-20408 Msa1427940:CDS 55.0%
GTGGTGCAGTCAAGCTGGTA+TGG + tig0026233:20417-20436 Msa1427940:intergenic 55.0%
CAGCTTGACTGCACCACAGA+GGG - tig0026233:20420-20439 Msa1427940:CDS 55.0%
! TGACAGTGGTGGAACCACAG+TGG - tig0026233:20472-20491 Msa1427940:intron 55.0%
GCGTTGCGATCGAAGAAGCT+TGG - tig0026233:22173-22192 Msa1427940:CDS 55.0%
GCAGAAACATCTCCGGCGGT+TGG + tig0026233:12267-12286 Msa1427940:intergenic 60.0%
AGCGGCGGCAGAAACATCTC+CGG + tig0026233:12274-12293 Msa1427940:intergenic 60.0%
AACACCGTTCCGGAACGGCA+CGG + tig0026233:12304-12323 Msa1427940:intergenic 60.0%
AAGAGCTGAAGGCAGCTCCG+AGG + tig0026233:14676-14695 Msa1427940:intergenic 60.0%
GGTATGCAGCCAGACACCAC+AGG + tig0026233:15078-15097 Msa1427940:intergenic 60.0%
ACGACCTGTGATGCTGCGAG+GGG - tig0026233:16344-16363 Msa1427940:intron 60.0%
TCTTCCCCTCGCAGCATCAC+AGG + tig0026233:16351-16370 Msa1427940:intergenic 60.0%
TCAGGCCCTGGTGACTTGAG+AGG + tig0026233:16414-16433 Msa1427940:intergenic 60.0%
GCTCTTGCATACGCAGGGTC+TGG - tig0026233:17513-17532 Msa1427940:intron 60.0%
ACGCGACCAAGACGACTCTC+CGG + tig0026233:18149-18168 Msa1427940:intergenic 60.0%
CTTGGTCGCGTTCCTCCCTT+TGG - tig0026233:18158-18177 Msa1427940:intron 60.0%
GAGGGCTATGGTGAACGAGG+TGG - tig0026233:18332-18351 Msa1427940:intron 60.0%
!! GTGGGAAGGTACCTTGGGTC+AGG + tig0026233:18538-18557 Msa1427940:intergenic 60.0%
AGGCAGAGGAGGTTGTGGGA+AGG + tig0026233:18552-18571 Msa1427940:intergenic 60.0%
TCCCACAACCTCCTCTGCCT+TGG - tig0026233:18552-18571 Msa1427940:intron 60.0%
GCCAAGGCAGAGGAGGTTGT+GGG + tig0026233:18556-18575 Msa1427940:intergenic 60.0%
TGCCAAGGCAGAGGAGGTTG+TGG + tig0026233:18557-18576 Msa1427940:intergenic 60.0%
GGTGTTTGCCAAGGCAGAGG+AGG + tig0026233:18563-18582 Msa1427940:intergenic 60.0%
! GAGGCATCATGGAGGGGTTG+AGG + tig0026233:18685-18704 Msa1427940:intergenic 60.0%
CCTCTGTGGTGCAGTCAAGC+TGG + tig0026233:20422-20441 Msa1427940:intergenic 60.0%
CCAGCTTGACTGCACCACAG+AGG - tig0026233:20419-20438 Msa1427940:CDS 60.0%
GCACCACAGAGGGCGATTTG+AGG - tig0026233:20430-20449 Msa1427940:CDS 60.0%
GCTCCTCAAATCGCCCTCTG+TGG + tig0026233:20436-20455 Msa1427940:intergenic 60.0%
AAAGCCTGGCCACGTGACAG+TGG - tig0026233:20458-20477 Msa1427940:intron 60.0%
GTGGTTCCACCACTGTCACG+TGG + tig0026233:20470-20489 Msa1427940:intergenic 60.0%
!! ACCTAGCTCTGGACCGAGCT+CGG + tig0026233:21746-21765 Msa1427940:intergenic 60.0%
GGCGGCAGAAACATCTCCGG+CGG + tig0026233:12271-12290 Msa1427940:intergenic 65.0%
GGTGGCTCGTCGCTTCTCTC+CGG - tig0026233:13593-13612 Msa1427940:three_prime_UTR 65.0%
GGGGCAGTGGGTAGGCGTAT+TGG - tig0026233:14245-14264 Msa1427940:three_prime_UTR 65.0%
!! ACTCAGGCGGTGGTGATGGG+TGG + tig0026233:14743-14762 Msa1427940:intergenic 65.0%
GTTGGGAGCTCATCAGGCCC+TGG + tig0026233:16426-16445 Msa1427940:intergenic 65.0%
GAGATCCGAAGGCGGGCATC+TGG - tig0026233:16740-16759 Msa1427940:intron 65.0%
TCCACCACTGTCACGTGGCC+AGG + tig0026233:20465-20484 Msa1427940:intergenic 65.0%
GAACGGCACGGCGGCAGAAG+CGG + tig0026233:12292-12311 Msa1427940:intergenic 70.0%
! CTTCTGCCGCCGTGCCGTTC+CGG - tig0026233:12292-12311 Msa1427940:three_prime_UTR 70.0%
ACCGTTCCGGAACGGCACGG+CGG + tig0026233:12301-12320 Msa1427940:intergenic 70.0%
GCCTGGCCACGTGACAGTGG+TGG - tig0026233:20461-20480 Msa1427940:intron 70.0%
TGCCCTGCTGCAGCCGAGCT+CGG - tig0026233:21730-21749 Msa1427940:intron 70.0%
GACCGAGCTCGGCTGCAGCA+GGG + tig0026233:21735-21754 Msa1427940:intergenic 70.0%
GCCGAGCTCGGTCCAGAGCT+AGG - tig0026233:21742-21761 Msa1427940:intron 70.0%
! GCCGCCGTGCCGTTCCGGAA+CGG - tig0026233:12297-12316 Msa1427940:three_prime_UTR 75.0%
GGACCGAGCTCGGCTGCAGC+AGG + tig0026233:21736-21755 Msa1427940:intergenic 75.0%
! CGGCACGGCGGCAGAAGCGG+CGG + tig0026233:12289-12308 Msa1427940:intergenic 80.0%
Chromosome Type Strat End Strand Name
tig0026233 gene 12189 22268 12189 ID=Msa1427940;Name=Msa1427940
tig0026233 mRNA 12189 22268 12189 ID=Msa1427940-mRNA-1;Parent=Msa1427940;Name=Msa1427940-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.62|0.44|1|0.5|0.22|9|2579|690
tig0026233 exon 12189 14446 12189 ID=Msa1427940-mRNA-1:exon:5713;Parent=Msa1427940-mRNA-1
tig0026233 exon 18850 19999 18850 ID=Msa1427940-mRNA-1:exon:5712;Parent=Msa1427940-mRNA-1
tig0026233 exon 20079 20272 20079 ID=Msa1427940-mRNA-1:exon:5711;Parent=Msa1427940-mRNA-1
tig0026233 exon 20294 20458 20294 ID=Msa1427940-mRNA-1:exon:5710;Parent=Msa1427940-mRNA-1
tig0026233 exon 20477 20702 20477 ID=Msa1427940-mRNA-1:exon:5709;Parent=Msa1427940-mRNA-1
tig0026233 exon 20791 21009 20791 ID=Msa1427940-mRNA-1:exon:5708;Parent=Msa1427940-mRNA-1
tig0026233 exon 21104 21230 21104 ID=Msa1427940-mRNA-1:exon:5707;Parent=Msa1427940-mRNA-1
tig0026233 exon 21935 22107 21935 ID=Msa1427940-mRNA-1:exon:5706;Parent=Msa1427940-mRNA-1
tig0026233 exon 22129 22268 22129 ID=Msa1427940-mRNA-1:exon:5705;Parent=Msa1427940-mRNA-1
tig0026233 CDS 22129 22268 22129 ID=Msa1427940-mRNA-1:cds;Parent=Msa1427940-mRNA-1
tig0026233 CDS 21935 22107 21935 ID=Msa1427940-mRNA-1:cds;Parent=Msa1427940-mRNA-1
tig0026233 CDS 21104 21230 21104 ID=Msa1427940-mRNA-1:cds;Parent=Msa1427940-mRNA-1
tig0026233 CDS 20791 21009 20791 ID=Msa1427940-mRNA-1:cds;Parent=Msa1427940-mRNA-1
tig0026233 CDS 20477 20702 20477 ID=Msa1427940-mRNA-1:cds;Parent=Msa1427940-mRNA-1
tig0026233 CDS 20294 20458 20294 ID=Msa1427940-mRNA-1:cds;Parent=Msa1427940-mRNA-1
tig0026233 CDS 20079 20272 20079 ID=Msa1427940-mRNA-1:cds;Parent=Msa1427940-mRNA-1
tig0026233 CDS 19171 19999 19171 ID=Msa1427940-mRNA-1:cds;Parent=Msa1427940-mRNA-1
tig0026233 three_prime_UTR 18850 19170 18850 ID=Msa1427940-mRNA-1:three_prime_utr;Parent=Msa1427940-mRNA-1
tig0026233 three_prime_UTR 12189 14446 12189 ID=Msa1427940-mRNA-1:three_prime_utr;Parent=Msa1427940-mRNA-1
Gene Sequence

>Msa1427940

ATGGTTATGAACGAAAGACCCACTAAGCGAGTCAAAAGAAGAGTCACAGCCGATCTTTACGATTTTCTCTCATTCCCAACCGCCGGAGATGTTTCTGCCGCCGCTTCTGCCGCCGTGCCGTTCCGGAACGGTGTTTACCGGTCTGCTTTTCCTCCTGAGCTTTTTCCTTCTCTGATGACGTGGCAGATCTTGTTTCGTGTTGGAGAAGTTGGTGATGGAGGTGATGTTTCGTCTGGTTTGGTTACTCTTGACATTGTTGAAGAGGATGTTACGAGGTCGAGGACGATTTATTGTGATCAATGTCGTGTTGTTGGATGGAGTGCTCATCCTGTGTGTCGAAAGCGATATCACTTCATAATAAGGTCTGCAACTGATGCCAATGCAGCATATCAAAGACCTTGCACTAAATGTGGAACTCCTCTCCAATTATCTGAAGCAAGGTGTAACTCATGTAATTTTGACATTTCTGCTGATGATCTTGAGGAATGGTTGTATCATCAACTTGAGGAGAACAACACACATCTTCTGCATGGTGTTGTACATGCTAATGGTTATGGTCACTTGCTTACTCTTAATGGAAGAGAAGGTGGCTCGTCGCTTCTCTCCGGATCTGATATTATGGGTTTCTGGGATAGGCTTTGTGCTGCTATGTCTGTTAGGAAGGTTACTGTGATGGATTTGTCCAAGAAATTTGGACTGGATTATCGTTTGCTTCATGCAATTGCCAGAGGGCATTCATGGTATGGTAATTGGGGTTATGAATTTGGGACTGGCTGCTATGCTCTTACCGAAGATGCATACAAGATGGCGGTAGATAACTTGTCCAACATGCCCCTGTCCTCATTATCGTTCCAGGATCGAGGACCTCATAACCCTGTACAGTCTTCATTGGCTGAAACTGAACTTCGCACAATGAAAGATCTCTTCTCCTTTTTGTTGGAATTGGTTCAAAATTTTCGTAAGCCCAGGAGTGCAGAGACTGCTAAACTGCATGAACAGACCACTCCCTGTAATTTATTATGTTCATGGACGAGAAATGATGTCGAAGAGGTGTTGCTTGCATCAAGTGCCTGTAATGAGGCCAAATGGGTGACAAGGCAAACTCTTAAAGGGGCAGTGGGTAGGCGTATTGGATCCCCAGAGCTTCTTGACTTCGGTCTTAAGCACTTGCAAGGGAAATCAGTTGCAAATGGAATGGTAGTTTGTTCTCGATGCAATCCCACATCTAGTGCTATTGAATTCAGATTGGCTCATGTGCCTAATGGATTAAGCTCCATTGCAAGCCATCCTTCCAAAGAGCAAGTGATTTCTGATTTGACATTCTTATTTAATTCAATTGTTCACCCTGAAAAAATGATCAAATATAGACCAAAGATTAATAGGAAAACAGTGGCTGATTCAGCCAGAAAGCTTCTTGACTGTAAGCAATTTATGAAGGATTACAAAATCGAGCAAATGACCTCGGAGCTGCCTTCAGCTCTTAAGATCTGGTGTCACGTGAAGCTTTCTGACCATCCTAAAGAAGACCACCCATCACCACCGCCTGAGTTAATTGTGCTGCCTTTGAATGCTACTAATGTTGACCTTTTGAATGAAGTCACTGGTGTTTTTCAAGAAGTATATGCAATGTACAAGAAGTTTGTAGCCGTGAAACTTCTAGGATATGGTTTAACCCGAGATCGTGTGTATACCCTAAAATTCCTTCTGGGGTCAACCAATGGTACAGTTGAAGTTCAAGGAGAATGCCCAGCTAAAAATGGCTTAGCACGATTCCGAATGGAGAGAGGAACAGAAGAATGGAAGGTTGACTGCATTTGTGGTACTAAGGATGATGATGGAGAAAGGATGTTAGCATGTGATACCTGTGGTGTCTGGCTGCATACCAGATGTGCTGGAATTGACAGTGCTGATGGGATGCCTTCCAAGTTTGTATGTAAGAGATGTGTTAACTCAATCCGTGTGGGAGATAACCAGGCTTGTAAATTAAACACATATTGCAGAGATGAAGCGGTGGCTACATATTCTGCACCTGTTCGTTGTAATATAAAAAATGTGAATTTTGGTGTACGTTGA
Protein sequence

>Msa1427940

MVMNERPTKRVKRRVTADLYDFLSFPTAGDVSAAASAAVPFRNGVYRSAFPPELFPSLMTWQILFRVGEVGDGGDVSSGLVTLDIVEEDVTRSRTIYCDQCRVVGWSAHPVCRKRYHFIIRSATDANAAYQRPCTKCGTPLQLSEARCNSCNFDISADDLEEWLYHQLEENNTHLLHGVVHANGYGHLLTLNGREGGSSLLSGSDIMGFWDRLCAAMSVRKVTVMDLSKKFGLDYRLLHAIARGHSWYGNWGYEFGTGCYALTEDAYKMAVDNLSNMPLSSLSFQDRGPHNPVQSSLAETELRTMKDLFSFLLELVQNFRKPRSAETAKLHEQTTPCNLLCSWTRNDVEEVLLASSACNEAKWVTRQTLKGAVGRRIGSPELLDFGLKHLQGKSVANGMVVCSRCNPTSSAIEFRLAHVPNGLSSIASHPSKEQVISDLTFLFNSIVHPEKMIKYRPKINRKTVADSARKLLDCKQFMKDYKIEQMTSELPSALKIWCHVKLSDHPKEDHPSPPPELIVLPLNATNVDLLNEVTGVFQEVYAMYKKFVAVKLLGYGLTRDRVYTLKFLLGSTNGTVEVQGECPAKNGLARFRMERGTEEWKVDCICGTKDDDGERMLACDTCGVWLHTRCAGIDSADGMPSKFVCKRCVNSIRVGDNQACKLNTYCRDEAVATYSAPVRCNIKNVNFGVR*