Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548950 | GAU48083.1 | 64.552 | 268 | 56 | 3 | 35 | 267 | 5 | 268 | 1.72e-101 | 307 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548950 | A0A2Z6P0T0 | 64.552 | 268 | 56 | 3 | 35 | 267 | 5 | 268 | 8.20e-102 | 307 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0548950 | Msa1042710 | 0.802992 | 4.311120e-49 | -8.615850e-47 |
| Msa0548950 | Msa1252390 | 0.804599 | 1.999425e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 57 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTAGAACTTTAACCATTT+TGG | 0.111553 | 4_1:+43592722 | Msa0548950:three_prime_UTR |
| AGTATAATTTGAATATTTAT+TGG | 0.149686 | 4_1:-43592412 | None:intergenic |
| TCACAGTTCTGTGCAATTTC+AGG | 0.155483 | 4_1:+43590001 | Msa0548950:CDS |
| ATGATTTGTAGTATGAAATT+TGG | 0.159254 | 4_1:+43592826 | Msa0548950:three_prime_UTR |
| AATGCAAAGGGTAGAGTATA+TGG | 0.262241 | 4_1:+43592342 | Msa0548950:CDS |
| GCAAACAATTAATTCCATTA+TGG | 0.297287 | 4_1:+43592500 | Msa0548950:CDS |
| TAAACATGCAAATATAGATT+TGG | 0.299235 | 4_1:+43592554 | Msa0548950:CDS |
| GTGAACAAGAGGCAACTATT+AGG | 0.318451 | 4_1:+43591274 | Msa0548950:CDS |
| TTAGTTGATTCTTAGATCCT+TGG | 0.322858 | 4_1:-43591497 | None:intergenic |
| GAGAGGTTGAGGCGCGATTA+AGG | 0.344114 | 4_1:+43592457 | Msa0548950:CDS |
| CACAGCTTCAGTAATCCATT+TGG | 0.367414 | 4_1:-43591373 | None:intergenic |
| TAGTTGATTCTTAGATCCTT+GGG | 0.378840 | 4_1:-43591496 | None:intergenic |
| ACTAAAGCATGAACTTGAAT+TGG | 0.381714 | 4_1:+43591515 | Msa0548950:CDS |
| AAATATAGATTTGGATTCAA+TGG | 0.392319 | 4_1:+43592563 | Msa0548950:CDS |
| TAGAGTATATGGGCTTGGTT+TGG | 0.416967 | 4_1:+43592353 | Msa0548950:CDS |
| ACAGCTTCAGTAATCCATTT+GGG | 0.422196 | 4_1:-43591372 | None:intergenic |
| GGATCTACTAAGAAAGATAA+TGG | 0.430569 | 4_1:+43591320 | Msa0548950:CDS |
| TGAACAAGAGGCAACTATTA+GGG | 0.439149 | 4_1:+43591275 | Msa0548950:CDS |
| ATTAGTGTATCATAATCAAT+AGG | 0.448901 | 4_1:-43592297 | None:intergenic |
| TATTGATGGTTTATGAATGT+AGG | 0.459697 | 4_1:+43592666 | Msa0548950:three_prime_UTR |
| ACACTAATGATTGAAGTTGT+TGG | 0.461763 | 4_1:+43592312 | Msa0548950:CDS |
| ATGTGGAAGAATAATATTGA+TGG | 0.474708 | 4_1:+43592652 | Msa0548950:exon |
| GGATTTAGACGTTGAGCCAC+GGG | 0.479351 | 4_1:-43592391 | None:intergenic |
| AAGGGTAGAGTATATGGGCT+TGG | 0.493623 | 4_1:+43592348 | Msa0548950:CDS |
| TGGTATGAGTGGAGAGGTTG+AGG | 0.504275 | 4_1:+43592446 | Msa0548950:CDS |
| TGTATCATAATCAATAGGCT+TGG | 0.504722 | 4_1:-43592292 | None:intergenic |
| GTATCATAATCAATAGGCTT+GGG | 0.509867 | 4_1:-43592291 | None:intergenic |
| TCATTATTACCAGCCTCAAA+AGG | 0.510093 | 4_1:-43592255 | None:intergenic |
| GGCACAACTGCTTGCAATGT+GGG | 0.510450 | 4_1:+43591398 | Msa0548950:CDS |
| GTATATGGGCTTGGTTTGGA+TGG | 0.514998 | 4_1:+43592357 | Msa0548950:CDS |
| ACTGAGAAGGAGAAAGAACC+TGG | 0.523690 | 4_1:-43589956 | None:intergenic |
| ATGCAAAGGGTAGAGTATAT+GGG | 0.526831 | 4_1:+43592343 | Msa0548950:CDS |
| GATTTCTGATTGAACTGAGA+AGG | 0.539271 | 4_1:-43589969 | None:intergenic |
| GATGGCAGCATGCGCACCCG+TGG | 0.550034 | 4_1:+43592375 | Msa0548950:CDS |
| AGGCAACTATTAGGGCCACA+TGG | 0.550112 | 4_1:+43591283 | Msa0548950:CDS |
| CTAATGATTGAAGTTGTTGG+AGG | 0.558766 | 4_1:+43592315 | Msa0548950:CDS |
| TGCAAATGTTGGTGCTGATG+TGG | 0.559498 | 4_1:+43592635 | Msa0548950:CDS |
| TGGATTTAGACGTTGAGCCA+CGG | 0.559998 | 4_1:-43592392 | None:intergenic |
| CACATGGGAATCAAAAGCTA+AGG | 0.571102 | 4_1:+43591299 | Msa0548950:CDS |
| TTACCAGCCTCAAAAGGATG+AGG | 0.573753 | 4_1:-43592249 | None:intergenic |
| AGAGGTTCATTGCACACCCA+AGG | 0.587415 | 4_1:+43591480 | Msa0548950:CDS |
| CAAATGGATTGGTGAACAAG+AGG | 0.589788 | 4_1:+43591263 | Msa0548950:CDS |
| AATTATACTGATATTGCTCG+TGG | 0.592386 | 4_1:+43592426 | Msa0548950:CDS |
| GTTGGAGGAAGAAATGCAAA+GGG | 0.599130 | 4_1:+43592330 | Msa0548950:CDS |
| GGCAACTATTAGGGCCACAT+GGG | 0.615938 | 4_1:+43591284 | Msa0548950:CDS |
| CGTGGAAGCAATGCAAATGT+TGG | 0.616233 | 4_1:+43592624 | Msa0548950:CDS |
| GAAATTGCACAGAACTGTGA+AGG | 0.618211 | 4_1:-43589998 | None:intergenic |
| GAGGCTGGTAATAATGAGAG+TGG | 0.619349 | 4_1:+43592261 | Msa0548950:CDS |
| TGTTGGAGGAAGAAATGCAA+AGG | 0.622639 | 4_1:+43592329 | Msa0548950:CDS |
| GATATTGCTCGTGGTATGAG+TGG | 0.631987 | 4_1:+43592435 | Msa0548950:CDS |
| ATGGATTACTGAAGCTGTGT+GGG | 0.633622 | 4_1:+43591377 | Msa0548950:CDS |
| TCTGTTGATAATGCTACTCG+TGG | 0.635589 | 4_1:+43592606 | Msa0548950:CDS |
| GGGCACAACTGCTTGCAATG+TGG | 0.649810 | 4_1:+43591397 | Msa0548950:CDS |
| AATCGTGATTCAGATGTCAG+AGG | 0.671707 | 4_1:+43591462 | Msa0548950:CDS |
| GCACAACTGCTTGCAATGTG+GGG | 0.699767 | 4_1:+43591399 | Msa0548950:CDS |
| AATGGATTACTGAAGCTGTG+TGG | 0.699938 | 4_1:+43591376 | Msa0548950:CDS |
| TGCTCGTGGTATGAGTGGAG+AGG | 0.702619 | 4_1:+43592440 | Msa0548950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAAATGATTTTTTTTGT+CGG | + | chr4_1:43590207-43590226 | Msa0548950:intron | 10.0% |
| !!! | CACAATAATAATTTTTTTTT+TGG | + | chr4_1:43590973-43590992 | Msa0548950:intron | 10.0% |
| !! | AGTATAATTTGAATATTTAT+TGG | - | chr4_1:43592415-43592434 | None:intergenic | 10.0% |
| !!! | ATTTTTTGATTTTCATGAAA+TGG | + | chr4_1:43590074-43590093 | Msa0548950:intron | 15.0% |
| !!! | TTTTTTGATTTTCATGAAAT+GGG | + | chr4_1:43590075-43590094 | Msa0548950:intron | 15.0% |
| !! | TTATTAGAAATACTTAATGT+TGG | + | chr4_1:43590666-43590685 | Msa0548950:intron | 15.0% |
| !!! | TAATTTTTTTTTTGGTTGAA+AGG | + | chr4_1:43590981-43591000 | Msa0548950:intron | 15.0% |
| !! | TATAAAAATGATTATTACAG+GGG | - | chr4_1:43591022-43591041 | None:intergenic | 15.0% |
| !! | GTATAAAAATGATTATTACA+GGG | - | chr4_1:43591023-43591042 | None:intergenic | 15.0% |
| !! | AGTATAAAAATGATTATTAC+AGG | - | chr4_1:43591024-43591043 | None:intergenic | 15.0% |
| !! | ACGATAAAATAAAAGAAATT+TGG | + | chr4_1:43591123-43591142 | Msa0548950:intron | 15.0% |
| !! | TTTCTGCAATTATTAAAAAT+GGG | - | chr4_1:43591238-43591257 | None:intergenic | 15.0% |
| !!! | TTTTCTGCAATTATTAAAAA+TGG | - | chr4_1:43591239-43591258 | None:intergenic | 15.0% |
| !! | TATAAATCTAGTAATGTATT+AGG | + | chr4_1:43592010-43592029 | Msa0548950:intron | 15.0% |
| !!! | GTTTGTTGAAATTTGATTTT+TGG | + | chr4_1:43590097-43590116 | Msa0548950:intron | 20.0% |
| !! | ATCAGAAAAAAGATTAAATG+TGG | - | chr4_1:43590431-43590450 | None:intergenic | 20.0% |
| !! | ATTTCTAATAATAATGACAG+AGG | - | chr4_1:43590657-43590676 | None:intergenic | 20.0% |
| !! | ATAAAAATGATTATTACAGG+GGG | - | chr4_1:43591021-43591040 | None:intergenic | 20.0% |
| !!! | TTTTTTTGTTATTGTAGTAC+TGG | + | chr4_1:43591971-43591990 | Msa0548950:intron | 20.0% |
| !! | ATTAGTGTATCATAATCAAT+AGG | - | chr4_1:43592300-43592319 | None:intergenic | 20.0% |
| !! | TAAACATGCAAATATAGATT+TGG | + | chr4_1:43592554-43592573 | Msa0548950:CDS | 20.0% |
| !! | AAATATAGATTTGGATTCAA+TGG | + | chr4_1:43592563-43592582 | Msa0548950:CDS | 20.0% |
| !!! | GAAACAATTTGATATTTTGT+AGG | + | chr4_1:43592688-43592707 | Msa0548950:three_prime_UTR | 20.0% |
| !!! | TATTAGAACTTTAACCATTT+TGG | + | chr4_1:43592722-43592741 | Msa0548950:three_prime_UTR | 20.0% |
| !!! | ATTAGAACTTTAACCATTTT+GGG | + | chr4_1:43592723-43592742 | Msa0548950:three_prime_UTR | 20.0% |
| !!! | GTTTGATATATGTTGTTTTT+TGG | + | chr4_1:43592759-43592778 | Msa0548950:three_prime_UTR | 20.0% |
| !!! | ATGATTTGTAGTATGAAATT+TGG | + | chr4_1:43592826-43592845 | Msa0548950:three_prime_UTR | 20.0% |
| !!! | TTTTATTTTGTCCTAGATGT+GGG | + | chr4_1:43590169-43590188 | Msa0548950:intron | 25.0% |
| !!! | AAATGATTTTTTTTGTCGGA+AGG | + | chr4_1:43590211-43590230 | Msa0548950:intron | 25.0% |
| ! | TAGGAAAAACAATTATGACA+GGG | - | chr4_1:43590762-43590781 | None:intergenic | 25.0% |
| ! | TTAGGAAAAACAATTATGAC+AGG | - | chr4_1:43590763-43590782 | None:intergenic | 25.0% |
| !!! | TGCATTTTTAGAAACATGTT+AGG | - | chr4_1:43590781-43590800 | None:intergenic | 25.0% |
| !!! | TTTTGCTTGTTTTTTCTAAG+AGG | + | chr4_1:43590850-43590869 | Msa0548950:intron | 25.0% |
| ! | ATGAATGAGAGTTTAAAGAT+TGG | + | chr4_1:43590948-43590967 | Msa0548950:intron | 25.0% |
| !!! | TTTTTTGGTTGAAAGGTTAA+TGG | + | chr4_1:43590988-43591007 | Msa0548950:intron | 25.0% |
| ! | GCAATTAAATCTATCTTTGA+TGG | + | chr4_1:43591074-43591093 | Msa0548950:intron | 25.0% |
| ! | AACATTTCCAATTGTTGTAA+GGG | - | chr4_1:43591100-43591119 | None:intergenic | 25.0% |
| !! | AAGAAATTTGGTTTAATGAG+TGG | + | chr4_1:43591135-43591154 | Msa0548950:intron | 25.0% |
| !! | AGAAATTTGGTTTAATGAGT+GGG | + | chr4_1:43591136-43591155 | Msa0548950:intron | 25.0% |
| ! | AATTGCAGAAAAACTACAAA+TGG | + | chr4_1:43591247-43591266 | Msa0548950:intron | 25.0% |
| ! | ATATGTGAGTATCAAGTTAT+TGG | + | chr4_1:43591722-43591741 | Msa0548950:intron | 25.0% |
| !!! | TTGGCTTCTTTAATTTTACT+TGG | + | chr4_1:43591741-43591760 | Msa0548950:intron | 25.0% |
| !! | AGACTTGTAGTTTATCTTTT+GGG | + | chr4_1:43591788-43591807 | Msa0548950:intron | 25.0% |
| ! | GTGTTTGACAGATATATTAT+CGG | + | chr4_1:43591897-43591916 | Msa0548950:intron | 25.0% |
| ! | CCAAAAACTAAGTAGATAAA+AGG | - | chr4_1:43591932-43591951 | None:intergenic | 25.0% |
| !!! | CCTTTTATCTACTTAGTTTT+TGG | + | chr4_1:43591929-43591948 | Msa0548950:intron | 25.0% |
| ! | CATGTATTGCCTTTATAATT+TGG | + | chr4_1:43592077-43592096 | Msa0548950:intron | 25.0% |
| !!! | CCTTTATAATTTGGTTTGTT+GGG | + | chr4_1:43592086-43592105 | Msa0548950:intron | 25.0% |
| ! | TTAACAAGGTAAATTAAGGA+GGG | - | chr4_1:43592140-43592159 | None:intergenic | 25.0% |
| ! | TTTAACAAGGTAAATTAAGG+AGG | - | chr4_1:43592141-43592160 | None:intergenic | 25.0% |
| ! | CAGTTTAACAAGGTAAATTA+AGG | - | chr4_1:43592144-43592163 | None:intergenic | 25.0% |
| ! | GCAAACAATTAATTCCATTA+TGG | + | chr4_1:43592500-43592519 | Msa0548950:CDS | 25.0% |
| ! | ATGTGGAAGAATAATATTGA+TGG | + | chr4_1:43592652-43592671 | Msa0548950:exon | 25.0% |
| !! | TATTGATGGTTTATGAATGT+AGG | + | chr4_1:43592666-43592685 | Msa0548950:three_prime_UTR | 25.0% |
| !!! | GATATATGTTGTTTTTTGGA+TGG | + | chr4_1:43592763-43592782 | Msa0548950:three_prime_UTR | 25.0% |
| !!! | GTTTTATTTTGTCCTAGATG+TGG | + | chr4_1:43590168-43590187 | Msa0548950:intron | 30.0% |
| TACTTTGAATGTGAGTTTGA+AGG | + | chr4_1:43590897-43590916 | Msa0548950:intron | 30.0% | |
| TGAGTTTGAAGGTAACAATA+GGG | + | chr4_1:43590908-43590927 | Msa0548950:intron | 30.0% | |
| CAACATTTCCAATTGTTGTA+AGG | - | chr4_1:43591101-43591120 | None:intergenic | 30.0% | |
| CAGAAAAACTACAAATGGAT+TGG | + | chr4_1:43591252-43591271 | Msa0548950:intron | 30.0% | |
| GGATCTACTAAGAAAGATAA+TGG | + | chr4_1:43591320-43591339 | Msa0548950:CDS | 30.0% | |
| ! | TAGTTGATTCTTAGATCCTT+GGG | - | chr4_1:43591499-43591518 | None:intergenic | 30.0% |
| ! | TTAGTTGATTCTTAGATCCT+TGG | - | chr4_1:43591500-43591519 | None:intergenic | 30.0% |
| ACTAAAGCATGAACTTGAAT+TGG | + | chr4_1:43591515-43591534 | Msa0548950:CDS | 30.0% | |
| AGTTGATCTCTTATCAACAA+AGG | - | chr4_1:43591697-43591716 | None:intergenic | 30.0% | |
| ! | GAGACTTGTAGTTTATCTTT+TGG | + | chr4_1:43591787-43591806 | Msa0548950:intron | 30.0% |
| !!! | TTTTGGCTTGCATTTATGTT+TGG | + | chr4_1:43591946-43591965 | Msa0548950:intron | 30.0% |
| !!! | TTTTGTTATTGTAGTACTGG+TGG | + | chr4_1:43591974-43591993 | Msa0548950:intron | 30.0% |
| !! | GTAATCGAATGACTTGTTAT+AGG | + | chr4_1:43592051-43592070 | Msa0548950:intron | 30.0% |
| !! | GCCTTTATAATTTGGTTTGT+TGG | + | chr4_1:43592085-43592104 | Msa0548950:intron | 30.0% |
| CCCAACAAACCAAATTATAA+AGG | - | chr4_1:43592089-43592108 | None:intergenic | 30.0% | |
| GTATCATAATCAATAGGCTT+GGG | - | chr4_1:43592294-43592313 | None:intergenic | 30.0% | |
| TGTATCATAATCAATAGGCT+TGG | - | chr4_1:43592295-43592314 | None:intergenic | 30.0% | |
| ACACTAATGATTGAAGTTGT+TGG | + | chr4_1:43592312-43592331 | Msa0548950:CDS | 30.0% | |
| AATTATACTGATATTGCTCG+TGG | + | chr4_1:43592426-43592445 | Msa0548950:CDS | 30.0% | |
| ! | TATTTTCTCAACACCCAAAA+TGG | - | chr4_1:43592739-43592758 | None:intergenic | 30.0% |
| GATTTCTGATTGAACTGAGA+AGG | - | chr4_1:43589972-43589991 | None:intergenic | 35.0% | |
| TGTTGAATGTGTGAGTTTGA+AGG | + | chr4_1:43590130-43590149 | Msa0548950:intron | 35.0% | |
| ! | CCTATTTTGCTACAACATTC+TGG | - | chr4_1:43590264-43590283 | None:intergenic | 35.0% |
| CCAGAATGTTGTAGCAAAAT+AGG | + | chr4_1:43590261-43590280 | Msa0548950:intron | 35.0% | |
| TGTGTTAGTTCAACATAGAG+TGG | + | chr4_1:43590393-43590412 | Msa0548950:intron | 35.0% | |
| AATTTGCATTACCCACTTGT+TGG | + | chr4_1:43590456-43590475 | Msa0548950:intron | 35.0% | |
| TTCTTCAATTGCCAACAAGT+GGG | - | chr4_1:43590470-43590489 | None:intergenic | 35.0% | |
| TTTCTTCAATTGCCAACAAG+TGG | - | chr4_1:43590471-43590490 | None:intergenic | 35.0% | |
| ! | CTTAATGTTGGTAGAAAACC+AGG | + | chr4_1:43590678-43590697 | Msa0548950:intron | 35.0% |
| GTGAGTTTGAAGGTAACAAT+AGG | + | chr4_1:43590907-43590926 | Msa0548950:intron | 35.0% | |
| CGAGACTAAAGATATATCGA+AGG | + | chr4_1:43591052-43591071 | Msa0548950:intron | 35.0% | |
| ! | AATTTGGTTTAATGAGTGGG+CGG | + | chr4_1:43591139-43591158 | Msa0548950:intron | 35.0% |
| TGAACAAGAGGCAACTATTA+GGG | + | chr4_1:43591275-43591294 | Msa0548950:CDS | 35.0% | |
| AAGTGTCAGAAAAACCCAAA+TGG | + | chr4_1:43591358-43591377 | Msa0548950:CDS | 35.0% | |
| ACAGCTTCAGTAATCCATTT+GGG | - | chr4_1:43591375-43591394 | None:intergenic | 35.0% | |
| CTAAACAAGTGCAGAACAAA+AGG | + | chr4_1:43591607-43591626 | Msa0548950:intron | 35.0% | |
| TGTTCAAAAAATGTCACACC+AGG | + | chr4_1:43591658-43591677 | Msa0548950:intron | 35.0% | |
| AAAAAATGTCACACCAGGAA+GGG | + | chr4_1:43591663-43591682 | Msa0548950:intron | 35.0% | |
| TGATGCTCAAAACAGAATCA+TGG | - | chr4_1:43591868-43591887 | None:intergenic | 35.0% | |
| !! | TTATTGTAGTACTGGTGGTT+TGG | + | chr4_1:43591979-43591998 | Msa0548950:intron | 35.0% |
| TTTGTTGGGATGTTCTGTTT+AGG | + | chr4_1:43592100-43592119 | Msa0548950:intron | 35.0% | |
| ACAAGCAACACAGTTTAACA+AGG | - | chr4_1:43592154-43592173 | None:intergenic | 35.0% | |
| TCATTATTACCAGCCTCAAA+AGG | - | chr4_1:43592258-43592277 | None:intergenic | 35.0% | |
| CTAATGATTGAAGTTGTTGG+AGG | + | chr4_1:43592315-43592334 | Msa0548950:CDS | 35.0% | |
| AATGCAAAGGGTAGAGTATA+TGG | + | chr4_1:43592342-43592361 | Msa0548950:CDS | 35.0% | |
| ATGCAAAGGGTAGAGTATAT+GGG | + | chr4_1:43592343-43592362 | Msa0548950:CDS | 35.0% | |
| !!! | TTTGTTTTGACGAGCCATAA+TGG | - | chr4_1:43592517-43592536 | None:intergenic | 35.0% |
| GAAATTGCACAGAACTGTGA+AGG | - | chr4_1:43590001-43590020 | None:intergenic | 40.0% | |
| TCACAGTTCTGTGCAATTTC+AGG | + | chr4_1:43590001-43590020 | Msa0548950:CDS | 40.0% | |
| CAACATTCAAACCCACATCT+AGG | - | chr4_1:43590183-43590202 | None:intergenic | 40.0% | |
| GCTATAAAACAGAGCTGCAA+TGG | - | chr4_1:43590633-43590652 | None:intergenic | 40.0% | |
| ! | CCTCATCAGAAAGATTTTCC+TGG | - | chr4_1:43590699-43590718 | None:intergenic | 40.0% |
| CCAGGAAAATCTTTCTGATG+AGG | + | chr4_1:43590696-43590715 | Msa0548950:intron | 40.0% | |
| TCTGATGAGGATGATGTTGA+TGG | + | chr4_1:43590709-43590728 | Msa0548950:intron | 40.0% | |
| ! | TTGATGGCCCTTACAACAAT+TGG | + | chr4_1:43591090-43591109 | Msa0548950:intron | 40.0% |
| !! | CAAATGGATTGGTGAACAAG+AGG | + | chr4_1:43591263-43591282 | Msa0548950:CDS | 40.0% |
| GTGAACAAGAGGCAACTATT+AGG | + | chr4_1:43591274-43591293 | Msa0548950:CDS | 40.0% | |
| !! | CTTAGCTTTTGATTCCCATG+TGG | - | chr4_1:43591301-43591320 | None:intergenic | 40.0% |
| CACATGGGAATCAAAAGCTA+AGG | + | chr4_1:43591299-43591318 | Msa0548950:CDS | 40.0% | |
| CACAGCTTCAGTAATCCATT+TGG | - | chr4_1:43591376-43591395 | None:intergenic | 40.0% | |
| !! | AATGGATTACTGAAGCTGTG+TGG | + | chr4_1:43591376-43591395 | Msa0548950:CDS | 40.0% |
| ! | ATGGATTACTGAAGCTGTGT+GGG | + | chr4_1:43591377-43591396 | Msa0548950:CDS | 40.0% |
| AATCGTGATTCAGATGTCAG+AGG | + | chr4_1:43591462-43591481 | Msa0548950:CDS | 40.0% | |
| CTAGGAAGAATTCCACACAA+GGG | + | chr4_1:43591630-43591649 | Msa0548950:intron | 40.0% | |
| TTGAACAGTTATCCCTTGTG+TGG | - | chr4_1:43591645-43591664 | None:intergenic | 40.0% | |
| CAAAAAATGTCACACCAGGA+AGG | + | chr4_1:43591662-43591681 | Msa0548950:intron | 40.0% | |
| AAAAATGTCACACCAGGAAG+GGG | + | chr4_1:43591664-43591683 | Msa0548950:intron | 40.0% | |
| TAGACTGCTGAAATGCACTA+CGG | + | chr4_1:43591818-43591837 | Msa0548950:intron | 40.0% | |
| AGATATATTATCGGCGACTG+TGG | + | chr4_1:43591906-43591925 | Msa0548950:intron | 40.0% | |
| TGTTGGAGGAAGAAATGCAA+AGG | + | chr4_1:43592329-43592348 | Msa0548950:CDS | 40.0% | |
| GTTGGAGGAAGAAATGCAAA+GGG | + | chr4_1:43592330-43592349 | Msa0548950:CDS | 40.0% | |
| ! | TAGAGTATATGGGCTTGGTT+TGG | + | chr4_1:43592353-43592372 | Msa0548950:CDS | 40.0% |
| !! | TCTGTTGATAATGCTACTCG+TGG | + | chr4_1:43592606-43592625 | Msa0548950:CDS | 40.0% |
| AACAGAGCTGCAATGGAGAA+AGG | - | chr4_1:43590626-43590645 | None:intergenic | 45.0% | |
| CAAGTGCAGAACAAAAGGCT+AGG | + | chr4_1:43591612-43591631 | Msa0548950:intron | 45.0% | |
| GCTAGGAAGAATTCCACACA+AGG | + | chr4_1:43591629-43591648 | Msa0548950:intron | 45.0% | |
| ! | GTCTCAACCTCATCCTTTTG+AGG | + | chr4_1:43592242-43592261 | Msa0548950:CDS | 45.0% |
| TTACCAGCCTCAAAAGGATG+AGG | - | chr4_1:43592252-43592271 | None:intergenic | 45.0% | |
| GAGGCTGGTAATAATGAGAG+TGG | + | chr4_1:43592261-43592280 | Msa0548950:CDS | 45.0% | |
| AAGGGTAGAGTATATGGGCT+TGG | + | chr4_1:43592348-43592367 | Msa0548950:CDS | 45.0% | |
| !! | GTATATGGGCTTGGTTTGGA+TGG | + | chr4_1:43592357-43592376 | Msa0548950:CDS | 45.0% |
| TGGATTTAGACGTTGAGCCA+CGG | - | chr4_1:43592395-43592414 | None:intergenic | 45.0% | |
| GATATTGCTCGTGGTATGAG+TGG | + | chr4_1:43592435-43592454 | Msa0548950:CDS | 45.0% | |
| CGTGGAAGCAATGCAAATGT+TGG | + | chr4_1:43592624-43592643 | Msa0548950:CDS | 45.0% | |
| !! | TGCAAATGTTGGTGCTGATG+TGG | + | chr4_1:43592635-43592654 | Msa0548950:CDS | 45.0% |
| GAGTGGGCGGTAATGAATCA+TGG | + | chr4_1:43591152-43591171 | Msa0548950:intron | 50.0% | |
| AGGCAACTATTAGGGCCACA+TGG | + | chr4_1:43591283-43591302 | Msa0548950:CDS | 50.0% | |
| GGCAACTATTAGGGCCACAT+GGG | + | chr4_1:43591284-43591303 | Msa0548950:CDS | 50.0% | |
| GGCACAACTGCTTGCAATGT+GGG | + | chr4_1:43591398-43591417 | Msa0548950:CDS | 50.0% | |
| GCACAACTGCTTGCAATGTG+GGG | + | chr4_1:43591399-43591418 | Msa0548950:CDS | 50.0% | |
| AGAGGTTCATTGCACACCCA+AGG | + | chr4_1:43591480-43591499 | Msa0548950:CDS | 50.0% | |
| AAAGGTTTGTGACCCCTTCC+TGG | - | chr4_1:43591679-43591698 | None:intergenic | 50.0% | |
| !!! | CAACCTCATCCTTTTGAGGC+TGG | + | chr4_1:43592246-43592265 | Msa0548950:CDS | 50.0% |
| GGATTTAGACGTTGAGCCAC+GGG | - | chr4_1:43592394-43592413 | None:intergenic | 50.0% | |
| TGGTATGAGTGGAGAGGTTG+AGG | + | chr4_1:43592446-43592465 | Msa0548950:CDS | 50.0% | |
| GGGCACAACTGCTTGCAATG+TGG | + | chr4_1:43591397-43591416 | Msa0548950:CDS | 55.0% | |
| TGCTCGTGGTATGAGTGGAG+AGG | + | chr4_1:43592440-43592459 | Msa0548950:CDS | 55.0% | |
| GAGAGGTTGAGGCGCGATTA+AGG | + | chr4_1:43592457-43592476 | Msa0548950:CDS | 55.0% | |
| GATGGCAGCATGCGCACCCG+TGG | + | chr4_1:43592375-43592394 | Msa0548950:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 43589957 | 43592904 | 43589957 | ID=Msa0548950;Name=Msa0548950 |
| chr4_1 | mRNA | 43589957 | 43592904 | 43589957 | ID=Msa0548950-mRNA-1;Parent=Msa0548950;Name=Msa0548950-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0.5|0.66|1|0.5|0.66|3|239|267 |
| chr4_1 | exon | 43589957 | 43590022 | 43589957 | ID=Msa0548950-mRNA-1:exon:11259;Parent=Msa0548950-mRNA-1 |
| chr4_1 | exon | 43591255 | 43591536 | 43591255 | ID=Msa0548950-mRNA-1:exon:11260;Parent=Msa0548950-mRNA-1 |
| chr4_1 | exon | 43592210 | 43592904 | 43592210 | ID=Msa0548950-mRNA-1:exon:11261;Parent=Msa0548950-mRNA-1 |
| chr4_1 | CDS | 43589957 | 43590022 | 43589957 | ID=Msa0548950-mRNA-1:cds;Parent=Msa0548950-mRNA-1 |
| chr4_1 | CDS | 43591255 | 43591536 | 43591255 | ID=Msa0548950-mRNA-1:cds;Parent=Msa0548950-mRNA-1 |
| chr4_1 | CDS | 43592210 | 43592665 | 43592210 | ID=Msa0548950-mRNA-1:cds;Parent=Msa0548950-mRNA-1 |
| chr4_1 | three_prime_UTR | 43592666 | 43592904 | 43592666 | ID=Msa0548950-mRNA-1:three_prime_utr;Parent=Msa0548950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
